AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464900 MtrunA17_Chr2g0297261 94.628 242 13 0 1 242 165 406 3.57e-171 477
Msa1464900 MtrunA17_Chr2g0329931 66.529 242 81 0 1 242 172 413 1.37e-119 347
Msa1464900 MtrunA17_Chr8g0342861 66.116 242 82 0 1 242 172 413 1.48e-118 344
Msa1464900 MtrunA17_Chr4g0070981 66.529 242 81 0 1 242 172 413 1.82e-118 344
Msa1464900 MtrunA17_Chr2g0299681 66.942 242 80 0 1 242 172 413 2.26e-118 343
Msa1464900 MtrunA17_Chr1g0169331 49.398 249 118 4 1 242 151 398 4.58e-77 238
Msa1464900 MtrunA17_Chr8g0342851 53.704 216 99 1 28 242 104 319 6.58e-76 232
Msa1464900 MtrunA17_Chr7g0247191 38.723 235 141 3 2 235 281 513 1.01e-51 175
Msa1464900 MtrunA17_Chr7g0247181 37.872 235 143 3 2 235 271 503 1.72e-51 174
Msa1464900 MtrunA17_Chr7g0247221 37.872 235 143 3 2 235 274 506 2.10e-51 174
Msa1464900 MtrunA17_Chr1g0149251 36.929 241 148 4 1 238 97 336 6.66e-49 164
Msa1464900 MtrunA17_Chr2g0330401 36.607 224 141 1 1 223 232 455 8.02e-47 162
Msa1464900 MtrunA17_Chr4g0003441 35.685 241 151 4 1 238 241 480 4.63e-45 157
Msa1464900 MtrunA17_Chr3g0107851 37.500 224 128 3 12 225 265 486 1.58e-41 149
Msa1464900 MtrunA17_Chr2g0293631 37.500 224 130 4 12 226 642 864 5.93e-41 149
Msa1464900 MtrunA17_Chr5g0442191 32.510 243 159 4 1 240 216 456 8.42e-40 144
Msa1464900 MtrunA17_Chr7g0263771 34.440 241 157 1 2 241 264 504 1.02e-39 144
Msa1464900 MtrunA17_Chr3g0121351 35.745 235 139 5 1 224 287 520 8.47e-39 142
Msa1464900 MtrunA17_Chr7g0270131 31.048 248 156 4 1 236 368 612 2.59e-38 141
Msa1464900 MtrunA17_Chr6g0449911 34.783 230 137 6 1 223 300 523 7.82e-38 140
Msa1464900 MtrunA17_Chr1g0179761 34.118 255 143 7 1 231 216 469 1.30e-37 137
Msa1464900 MtrunA17_Chr7g0271121 35.088 228 143 5 1 225 243 468 1.62e-37 139
Msa1464900 MtrunA17_Chr3g0095031 32.773 238 155 4 1 235 225 460 3.08e-37 137
Msa1464900 MtrunA17_Chr1g0193491 33.175 211 138 2 1 209 252 461 6.84e-37 137
Msa1464900 MtrunA17_Chr2g0277821 34.419 215 139 2 10 223 652 865 5.07e-35 132
Msa1464900 MtrunA17_Chr4g0076491 30.290 241 150 3 2 225 427 666 5.34e-35 132
Msa1464900 MtrunA17_Chr4g0025141 34.314 204 119 4 43 231 14 217 9.93e-35 124
Msa1464900 MtrunA17_Chr3g0137901 38.415 164 99 2 76 238 10 172 1.30e-34 122
Msa1464900 MtrunA17_Chr1g0176041 32.340 235 145 5 1 223 295 527 1.44e-34 130
Msa1464900 MtrunA17_Chr4g0063551 35.193 233 138 5 1 223 287 516 2.86e-34 129
Msa1464900 MtrunA17_Chr6g0449741 30.290 241 148 4 2 225 389 626 5.98e-34 129
Msa1464900 MtrunA17_Chr1g0200181 32.407 216 142 3 1 215 290 502 1.78e-31 121
Msa1464900 MtrunA17_Chr1g0157691 30.328 244 165 4 1 242 292 532 2.16e-31 121
Msa1464900 MtrunA17_Chr7g0236841 29.646 226 158 1 12 237 155 379 4.16e-31 119
Msa1464900 MtrunA17_Chr6g0483491 29.646 226 158 1 12 237 155 379 6.26e-31 118
Msa1464900 MtrunA17_Chr4g0040761 30.263 228 156 2 10 235 162 388 1.85e-29 116
Msa1464900 MtrunA17_Chr3g0098121 31.507 219 142 3 12 225 298 513 8.59e-28 111
Msa1464900 MtrunA17_Chr2g0310581 30.180 222 151 2 13 231 199 419 1.87e-27 109
Msa1464900 MtrunA17_Chr2g0309551 25.581 258 151 3 15 231 272 529 1.95e-26 107
Msa1464900 MtrunA17_Chr5g0409981 31.863 204 135 2 12 211 252 455 1.98e-26 106
Msa1464900 MtrunA17_Chr2g0300291 30.594 219 144 2 12 225 288 503 2.75e-26 107
Msa1464900 MtrunA17_Chr8g0347151 27.083 240 145 3 11 236 355 578 3.39e-26 106
Msa1464900 MtrunA17_Chr6g0461751 31.674 221 134 5 12 223 289 501 2.65e-25 103
Msa1464900 MtrunA17_Chr8g0347161 29.167 240 146 5 11 239 256 482 2.84e-25 103
Msa1464900 MtrunA17_Chr8g0347171 27.686 242 151 5 11 241 314 542 1.02e-24 102
Msa1464900 MtrunA17_Chr8g0386451 27.386 241 143 6 11 236 442 665 1.85e-24 101
Msa1464900 MtrunA17_Chr3g0114081 28.378 222 139 3 10 212 164 384 2.12e-24 101
Msa1464900 MtrunA17_Chr2g0307471 28.704 216 149 4 10 221 237 451 3.34e-23 97.8
Msa1464900 MtrunA17_Chr4g0062301 29.358 218 149 4 12 225 246 462 5.91e-23 97.1
Msa1464900 MtrunA17_Chr6g0475251 31.081 222 126 8 2 209 245 453 1.09e-22 96.3
Msa1464900 MtrunA17_Chr1g0204391 30.516 213 139 4 2 209 202 410 1.67e-22 95.9
Msa1464900 MtrunA17_Chr4g0058591 31.214 173 118 1 1 172 338 510 3.09e-22 94.7
Msa1464900 MtrunA17_Chr4g0025101 29.825 228 102 7 27 234 7 196 4.74e-22 90.5
Msa1464900 MtrunA17_Chr5g0443991 31.068 206 136 4 12 212 223 427 5.20e-22 94.4
Msa1464900 MtrunA17_Chr4g0034411 29.279 222 149 6 8 224 220 438 5.25e-22 94.4
Msa1464900 MtrunA17_Chr6g0466611 28.384 229 145 7 12 225 293 517 5.68e-20 88.6
Msa1464900 MtrunA17_Chr1g0192021 25.483 259 145 5 11 226 178 431 9.71e-20 87.8
Msa1464900 MtrunA17_Chr2g0301281 34.343 99 64 1 138 236 388 485 3.17e-17 80.5
Msa1464900 MtrunA17_Chr4g0029191 34.343 99 64 1 138 236 391 488 4.42e-17 80.1
Msa1464900 MtrunA17_Chr7g0236831 23.904 251 142 5 11 212 329 579 5.37e-17 79.7
Msa1464900 MtrunA17_Chr4g0004301 27.941 204 131 4 26 223 258 451 1.44e-14 72.4
Msa1464900 MtrunA17_Chr4g0062321 28.402 169 117 3 12 177 66 233 1.93e-14 70.5
Msa1464900 MtrunA17_Chr5g0402301 26.842 190 107 5 83 242 26 213 2.89e-14 69.3
Msa1464900 MtrunA17_Chr5g0434301 27.451 204 132 4 26 223 258 451 5.37e-14 70.9
Msa1464900 MtrunA17_Chr5g0429221 23.982 221 153 4 12 226 150 361 5.68e-14 70.5
Msa1464900 MtrunA17_Chr8g0377041 30.000 100 70 0 105 204 489 588 2.14e-13 69.3
Msa1464900 MtrunA17_Chr8g0354761 29.600 125 85 1 99 220 243 367 4.87e-12 65.1
Msa1464900 MtrunA17_Chr4g0058601 44.928 69 31 1 173 234 9 77 4.76e-11 58.5
Msa1464900 MtrunA17_Chr1g0155201 25.455 220 144 7 10 226 35 237 7.84e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464900 AT3G19760.1 88.430 242 28 0 1 242 167 408 1.56e-162 456
Msa1464900 AT1G51380.1 73.967 242 60 1 1 242 154 392 1.31e-132 379
Msa1464900 AT3G13920.4 67.769 242 78 0 1 242 166 407 2.39e-121 351
Msa1464900 AT3G13920.1 67.769 242 78 0 1 242 171 412 2.47e-121 352
Msa1464900 AT3G13920.3 67.769 242 78 0 1 242 161 402 3.47e-121 351
Msa1464900 AT1G54270.2 66.529 242 81 0 1 242 166 407 7.50e-119 345
Msa1464900 AT1G54270.1 66.529 242 81 0 1 242 171 412 1.03e-118 345
Msa1464900 AT1G72730.1 64.876 242 85 0 1 242 173 414 1.84e-116 339
Msa1464900 AT3G13920.2 70.000 220 66 0 1 220 171 390 1.02e-111 327
Msa1464900 AT3G13920.5 70.000 220 66 0 1 220 175 394 1.46e-111 327
Msa1464900 AT1G51380.2 80.992 121 23 0 1 121 154 274 5.99e-67 208
Msa1464900 AT4G00660.1 37.190 242 150 2 1 242 263 502 1.01e-51 175
Msa1464900 AT4G00660.2 37.190 242 150 2 1 242 263 502 1.01e-51 175
Msa1464900 AT3G61240.2 35.124 242 155 2 1 242 256 495 2.23e-47 164
Msa1464900 AT3G61240.1 35.124 242 155 2 1 242 256 495 2.23e-47 164
Msa1464900 AT2G45810.1 35.319 235 149 3 2 235 286 518 1.42e-46 162
Msa1464900 AT5G11170.2 35.685 241 151 4 1 238 97 336 1.78e-46 158
Msa1464900 AT1G55150.1 39.906 213 125 3 1 211 236 447 3.64e-46 160
Msa1464900 AT1G55150.2 37.778 225 137 3 1 223 261 484 4.05e-46 161
Msa1464900 AT5G11170.1 35.685 241 151 4 1 238 180 419 1.05e-45 158
Msa1464900 AT5G11200.1 35.685 241 151 4 1 238 180 419 1.05e-45 158
Msa1464900 AT5G63120.2 37.559 213 132 1 12 223 313 525 1.86e-43 154
Msa1464900 AT3G53110.1 35.294 238 138 6 12 234 239 475 2.06e-43 153
Msa1464900 AT3G06480.1 37.395 238 135 5 10 236 580 814 2.27e-43 156
Msa1464900 AT3G09720.2 35.745 235 150 1 2 235 273 507 1.59e-41 149
Msa1464900 AT3G09720.1 35.745 235 150 1 2 235 273 507 1.59e-41 149
Msa1464900 AT3G01540.1 36.214 243 145 4 1 234 294 535 4.01e-40 146
Msa1464900 AT3G01540.4 36.214 243 145 4 1 234 294 535 4.04e-40 146
Msa1464900 AT3G01540.2 36.214 243 145 4 1 234 294 535 4.04e-40 146
Msa1464900 AT3G01540.3 36.214 243 145 4 1 234 294 535 4.04e-40 146
Msa1464900 AT1G20920.2 35.349 215 137 2 10 223 340 553 1.20e-39 145
Msa1464900 AT5G26742.3 33.740 246 157 5 1 242 149 392 2.64e-39 144
Msa1464900 AT5G14610.7 35.776 232 139 4 12 234 177 407 5.26e-39 141
Msa1464900 AT5G14610.3 35.776 232 139 4 12 234 177 407 5.26e-39 141
Msa1464900 AT1G51380.4 83.750 80 13 0 1 80 154 233 7.32e-39 137
Msa1464900 AT3G22330.1 32.773 238 155 4 1 235 240 475 8.51e-39 142
Msa1464900 AT1G51380.3 83.750 80 13 0 1 80 154 233 8.88e-39 137
Msa1464900 AT3G22310.2 32.489 237 157 2 1 235 252 487 9.57e-39 142
Msa1464900 AT3G22310.1 32.489 237 157 2 1 235 252 487 1.08e-38 142
Msa1464900 AT1G20920.4 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT1G20920.6 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT1G20920.3 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT1G20920.7 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT1G20920.5 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT1G20920.1 35.349 215 137 2 10 223 678 891 1.17e-38 143
Msa1464900 AT5G14610.2 35.776 232 139 4 12 234 308 538 1.55e-38 142
Msa1464900 AT5G14610.6 35.776 232 139 4 12 234 308 538 1.64e-38 142
Msa1464900 AT5G14610.5 35.776 232 139 4 12 234 316 546 1.72e-38 142
Msa1464900 AT5G14610.1 35.776 232 139 4 12 234 376 606 2.22e-38 142
Msa1464900 AT3G58510.1 35.470 234 141 4 1 225 293 525 2.27e-38 141
Msa1464900 AT3G58510.3 35.470 234 141 4 1 225 293 525 2.27e-38 141
Msa1464900 AT3G58510.2 35.470 234 141 4 1 225 293 525 2.27e-38 141
Msa1464900 AT5G26742.1 34.649 228 144 4 1 225 242 467 2.48e-38 142
Msa1464900 AT5G26742.2 34.649 228 144 4 1 225 242 467 2.49e-38 142
Msa1464900 AT2G47330.1 31.301 246 161 3 1 241 365 607 4.25e-38 141
Msa1464900 AT5G11200.3 30.142 282 152 4 1 238 180 460 5.89e-38 138
Msa1464900 AT2G42520.2 34.468 235 144 5 1 225 301 535 2.59e-36 135
Msa1464900 AT2G42520.1 34.468 235 144 5 1 225 301 535 2.59e-36 135
Msa1464900 AT2G42520.3 34.468 235 144 5 1 225 301 535 2.59e-36 135
Msa1464900 AT2G33730.1 31.535 241 147 2 2 225 454 693 3.04e-36 135
Msa1464900 AT3G58570.1 32.766 235 148 5 1 225 288 522 2.59e-34 130
Msa1464900 AT4G33370.1 33.182 220 143 3 1 219 243 459 5.59e-33 125
Msa1464900 AT1G28180.1 33.628 226 144 4 2 225 114 335 8.91e-33 122
Msa1464900 AT5G51280.1 32.870 216 141 3 1 215 292 504 4.01e-32 123
Msa1464900 AT5G60990.1 29.362 235 165 1 1 235 154 387 1.24e-31 120
Msa1464900 AT5G11200.2 36.571 175 108 3 66 238 305 478 2.79e-31 120
Msa1464900 AT1G77030.1 29.515 227 159 1 10 235 172 398 2.04e-30 119
Msa1464900 AT3G09620.1 31.120 241 127 5 7 238 534 744 3.49e-30 118
Msa1464900 AT3G09620.2 31.120 241 127 5 7 238 535 745 3.59e-30 118
Msa1464900 AT5G63630.1 26.829 246 150 3 10 241 208 437 7.16e-29 114
Msa1464900 AT3G02065.1 31.278 227 149 5 1 223 113 336 7.79e-29 112
Msa1464900 AT1G16280.1 31.982 222 135 6 13 225 205 419 8.39e-29 113
Msa1464900 AT5G08610.1 27.755 245 147 3 11 241 537 765 1.51e-28 114
Msa1464900 AT1G12770.2 25.818 275 157 3 3 232 259 531 2.19e-28 112
Msa1464900 AT1G12770.1 25.818 275 157 3 3 232 259 531 2.19e-28 112
Msa1464900 AT5G63630.2 26.829 246 150 3 10 241 402 631 3.45e-28 112
Msa1464900 AT3G02065.3 31.278 227 149 5 1 223 250 473 6.87e-28 111
Msa1464900 AT3G02065.2 31.278 227 149 5 1 223 250 473 6.87e-28 111
Msa1464900 AT5G08620.1 27.347 245 148 3 11 241 235 463 8.22e-28 111
Msa1464900 AT3G06480.2 35.227 176 107 4 10 181 580 752 3.96e-27 109
Msa1464900 AT1G31970.1 28.112 249 168 4 1 238 255 503 7.59e-27 108
Msa1464900 AT4G16630.1 31.481 216 146 1 12 225 314 529 1.01e-26 108
Msa1464900 AT5G05450.1 30.275 218 136 3 10 212 166 382 1.46e-26 107
Msa1464900 AT3G18600.1 31.163 215 144 3 10 221 235 448 5.49e-26 106
Msa1464900 AT5G62190.1 30.493 223 130 4 2 211 239 449 1.54e-25 105
Msa1464900 AT2G07750.1 28.279 244 137 5 11 236 531 754 3.86e-25 103
Msa1464900 AT1G63250.1 28.631 241 140 6 11 236 484 707 6.56e-25 103
Msa1464900 AT1G71370.1 29.665 209 140 3 10 212 166 373 1.80e-23 99.0
Msa1464900 AT5G63120.3 33.333 162 107 1 12 172 313 474 2.78e-23 98.2
Msa1464900 AT5G63120.4 33.333 162 107 1 12 172 313 474 2.78e-23 98.2
Msa1464900 AT5G63120.5 33.333 162 107 1 12 172 313 474 2.78e-23 98.2
Msa1464900 AT5G63120.1 33.333 162 107 1 12 172 313 474 2.86e-23 98.2
Msa1464900 AT5G65900.1 30.233 215 147 2 10 221 300 514 7.53e-23 97.4
Msa1464900 AT5G14610.4 33.929 168 108 3 12 177 316 482 2.61e-22 95.5
Msa1464900 AT5G54910.1 30.000 220 145 6 12 225 219 435 3.47e-21 92.4
Msa1464900 AT4G09730.1 27.897 233 141 8 12 225 264 488 1.23e-18 85.1
Msa1464900 AT4G34910.1 25.660 265 152 5 6 228 195 456 5.55e-18 83.2
Msa1464900 AT2G40700.1 38.202 89 55 0 138 226 380 468 3.33e-16 77.8
Msa1464900 AT3G16840.2 27.273 132 93 1 102 230 494 625 2.35e-14 72.4
Msa1464900 AT3G16840.1 27.273 132 93 1 102 230 493 624 2.39e-14 72.4
Msa1464900 AT1G27880.2 29.412 119 84 0 105 223 483 601 3.23e-14 72.0
Msa1464900 AT1G27880.1 29.412 119 84 0 105 223 483 601 3.25e-14 72.0
Msa1464900 AT4G15850.1 26.794 209 125 8 22 218 256 448 4.20e-12 65.9
Msa1464900 AT5G19210.1 35.556 90 55 2 138 224 214 303 2.30e-11 63.2
Msa1464900 AT5G19210.3 35.556 90 55 2 138 224 214 303 2.30e-11 63.2
Msa1464900 AT5G19210.2 35.556 90 55 2 138 224 371 460 2.41e-11 63.5

Find 108 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACTGAAAATGTTATTT+TGG 0.151334 tig0044731:-3538 Msa1464900:five_prime_UTR
TGTTGCTGATCTTATATAAA+AGG 0.182863 tig0044731:-970 Msa1464900:exon
CTCTTCATTGTTGTTGTAGT+TGG 0.238396 tig0044731:-4295 Msa1464900:five_prime_UTR
ATGTACAGCTCTCGATTATT+TGG 0.242192 tig0044731:+1235 Msa1464900:intergenic
TACGCTACCTCATGAAATTT+TGG 0.254057 tig0044731:-2673 Msa1464900:CDS
TATGGTGGCTCACCTTGATT+TGG 0.258292 tig0044731:-4013 Msa1464900:five_prime_UTR
TCAAAATCCAAAATTGGATT+TGG 0.296254 tig0044731:-4465 None:intergenic
GGTCAGTTGGGCTGTTCTTT+TGG 0.301651 tig0044731:-3859 Msa1464900:five_prime_UTR
GAGACGCACGAGTTAAATAT+TGG 0.302996 tig0044731:+4373 Msa1464900:intergenic
AAGAGAAAGAGATGCAATTA+TGG 0.315960 tig0044731:-2200 Msa1464900:CDS
GTCAAATTTATGCTAGGAAT+TGG 0.320658 tig0044731:-915 Msa1464900:three_prime_UTR
ATTGGCCGTTCTGGACGTTT+TGG 0.323765 tig0044731:-1205 Msa1464900:CDS
TATTGATAACGACTGATGTT+TGG 0.325693 tig0044731:-2150 Msa1464900:CDS
ATATCTCCCTCCGGATCTTC+AGG 0.332541 tig0044731:-3203 Msa1464900:intron
GACTTATGAAATTTATTGAT+AGG 0.338371 tig0044731:+3766 Msa1464900:intergenic
TTGTAATTTGAACAGGTTGC+AGG 0.352767 tig0044731:-3595 Msa1464900:intron
TAGTTGGCACTTTGACTTCT+CGG 0.353299 tig0044731:-4279 Msa1464900:five_prime_UTR
AAGCATACAATAAGCTATAT+AGG 0.357388 tig0044731:+4189 Msa1464900:intergenic
GATTTGGGCATGTTGAACTA+TGG 0.358630 tig0044731:-3997 Msa1464900:five_prime_UTR
TGTTGTCACAAATAGAAATA+AGG 0.360677 tig0044731:+4233 Msa1464900:intergenic
CCACCTTGCATGTAAGATAA+TGG 0.364408 tig0044731:+725 Msa1464900:intergenic
ATTCATCGGATTGGCCGTTC+TGG 0.374179 tig0044731:-1214 Msa1464900:CDS
ATTGCATCTCTTTCTCTTTG+AGG 0.376417 tig0044731:+2205 Msa1464900:intergenic
ATGGTGGCTCACCTTGATTT+GGG 0.377270 tig0044731:-4012 Msa1464900:five_prime_UTR
ATTGATAACGACTGATGTTT+GGG 0.390146 tig0044731:-2149 Msa1464900:CDS
TGTGTCTCCGACAAGGGAAT+TGG 0.408057 tig0044731:-3565 Msa1464900:five_prime_UTR
CTTATGAAACTCTTGACATA+TGG 0.410214 tig0044731:-853 Msa1464900:three_prime_UTR
TCAGAGGTCCCTCACTCATC+TGG 0.412635 tig0044731:-3827 Msa1464900:five_prime_UTR
AGTATACCTGTCATGGTCAT+AGG 0.424071 tig0044731:+3698 Msa1464900:intergenic
ATGTTGCCAAAGCGGTCTTA+TGG 0.436409 tig0044731:-4031 Msa1464900:five_prime_UTR
CATGTAGTGTCGGGGACTCC+TGG 0.441130 tig0044731:-3426 Msa1464900:five_prime_UTR
TGTGAGGCCAATTCCCTTGT+CGG 0.444766 tig0044731:+3558 Msa1464900:intergenic
CCTCATGATTACAGGGCATC+AGG 0.461625 tig0044731:-2518 Msa1464900:intron
AAATCCAAAATTGGATTTGG+AGG 0.462538 tig0044731:-4462 None:intergenic
AATAAATTTCATAAGTCAAG+AGG 0.463570 tig0044731:-3760 Msa1464900:five_prime_UTR
CACGGAGTTCATGTAGTGTC+GGG 0.464753 tig0044731:-3435 Msa1464900:five_prime_UTR
ACGACTGATGTTTGGGCTCG+TGG 0.476458 tig0044731:-2142 Msa1464900:CDS
ACAGCCCAACTGACCATCAC+AGG 0.477996 tig0044731:+3867 Msa1464900:intergenic
CGAGCACATGCATGCATTGG+AGG 0.480977 tig0044731:-3492 Msa1464900:five_prime_UTR
GTTGCTGATCTTATATAAAA+GGG 0.485003 tig0044731:-969 Msa1464900:exon
ATAAATTGTGACCATTCCAT+TGG 0.492230 tig0044731:-3799 Msa1464900:five_prime_UTR
AGCTATCAAGTTGCTTGTGC+TGG 0.499944 tig0044731:-3361 Msa1464900:intron
ATGCCCTGTGATGGTCAGTT+GGG 0.505958 tig0044731:-3871 Msa1464900:five_prime_UTR
GTAAGGTGAACCTGAAGATC+CGG 0.506742 tig0044731:+3193 Msa1464900:intergenic
TCGACTGAACCCAGGGATGA+AGG 0.510337 tig0044731:-809 Msa1464900:three_prime_UTR
TGCATTGGAGGCAAAAGCGT+TGG 0.520539 tig0044731:-3480 Msa1464900:five_prime_UTR
ATCGAGAGCTGTACATTCAT+CGG 0.523237 tig0044731:-1228 Msa1464900:CDS
GAGCCACCATAAGACCGCTT+TGG 0.523873 tig0044731:+4025 None:intergenic
AAAAGTAAACCTTCATCCCT+GGG 0.526364 tig0044731:+800 None:intergenic
AAAATTGGATTTGGAGGGAA+GGG 0.528315 tig0044731:-4456 None:intergenic
GTGTTTGTCAAATTTATGCT+AGG 0.528416 tig0044731:-921 Msa1464900:three_prime_UTR
AATGCCCTGTGATGGTCAGT+TGG 0.530582 tig0044731:-3872 Msa1464900:five_prime_UTR
TAAATTGTGACCATTCCATT+GGG 0.531754 tig0044731:-3798 Msa1464900:five_prime_UTR
GAGTCCTTGACATGATCAAA+AGG 0.531974 tig0044731:-3401 Msa1464900:exon
TTATGTTGATGTTGAAAGGG+AGG 0.536096 tig0044731:-2490 Msa1464900:CDS
TGAGTGAGGGACCTCTGAGC+AGG 0.537060 tig0044731:+3832 None:intergenic
AATCCAAAATTGGATTTGGA+GGG 0.538233 tig0044731:-4461 None:intergenic
TTTAATTGTGTCTCCGACAA+GGG 0.538538 tig0044731:-3571 Msa1464900:five_prime_UTR
CTTTAATTGTGTCTCCGACA+AGG 0.539027 tig0044731:-3572 Msa1464900:five_prime_UTR
AGTTCAACATGCCCAAATCA+AGG 0.542457 tig0044731:+4001 Msa1464900:intergenic
GAGCTGTACATTCATCGGAT+TGG 0.543246 tig0044731:-1223 Msa1464900:CDS
TGTCCATTATCTTACATGCA+AGG 0.543686 tig0044731:-728 Msa1464900:three_prime_UTR
ATACGAGCACATGCATGCAT+TGG 0.549970 tig0044731:-3495 Msa1464900:five_prime_UTR
TTGTTTGCTCGACTGAACCC+AGG 0.550223 tig0044731:-817 Msa1464900:three_prime_UTR
AAGGGCAATGCAGTATATGT+TGG 0.553284 tig0044731:-951 Msa1464900:three_prime_UTR
TCGTGGACTTGATGTACAGC+AGG 0.556397 tig0044731:-2125 Msa1464900:intron
ATGGAGCCTATGACCATGAC+AGG 0.559032 tig0044731:-3704 Msa1464900:intron
ATCATGTCAAGGACTCGGCC+AGG 0.564010 tig0044731:+3408 Msa1464900:intergenic
CATAGACAGTATACCTGTCA+TGG 0.565778 tig0044731:+3691 Msa1464900:intergenic
GATAGGTTCTTCTGACCCAA+TGG 0.565909 tig0044731:+3783 Msa1464900:intergenic
AAAATTAATCTCAGCCGTAT+CGG 0.568278 tig0044731:+773 Msa1464900:intergenic
ATAAGATCAGCAACATTCAT+CGG 0.575456 tig0044731:+978 Msa1464900:intergenic
ACGTGATGAATTGACATTGG+AGG 0.580038 tig0044731:-2604 Msa1464900:intron
TGTTTGCTCGACTGAACCCA+GGG 0.581642 tig0044731:-816 Msa1464900:three_prime_UTR
ATTATGGATGAATTTCGTGC+TGG 0.582575 tig0044731:-2184 Msa1464900:CDS
CTACAACAACAATGAAGAGA+GGG 0.584294 tig0044731:+4299 Msa1464900:intergenic
AGACCGCTTTGGCAACATCA+TGG 0.586297 tig0044731:+4036 Msa1464900:intergenic
AAAACGTGATGAATTGACAT+TGG 0.590799 tig0044731:-2607 Msa1464900:CDS
ACACGGAGTTCATGTAGTGT+CGG 0.591877 tig0044731:-3436 Msa1464900:five_prime_UTR
TTGCCAAAGCGGTCTTATGG+TGG 0.596063 tig0044731:-4028 Msa1464900:five_prime_UTR
CAAAATTGGATTTGGAGGGA+AGG 0.598555 tig0044731:-4457 None:intergenic
TTGATGTTGAAAGGGAGGAA+TGG 0.599804 tig0044731:-2485 Msa1464900:CDS
TATATTCACCAGATGAGTGA+GGG 0.601227 tig0044731:+3819 Msa1464900:intergenic
ATAAATTTCATAAGTCAAGA+GGG 0.604623 tig0044731:-3759 Msa1464900:five_prime_UTR
TTCACTATCTCATCAATGCA+CGG 0.607282 tig0044731:-2235 Msa1464900:CDS
TATTTGAGAATGCCCTGTGA+TGG 0.609723 tig0044731:-3880 Msa1464900:five_prime_UTR
GTCATCTCCAAAATTTCATG+AGG 0.612581 tig0044731:+2666 Msa1464900:intergenic
CCACCATGATGTTGCCAAAG+CGG 0.614786 tig0044731:-4039 Msa1464900:five_prime_UTR
ATTCTGTAACACCAAGCGAA+AGG 0.615167 tig0044731:-2406 Msa1464900:intron
TGTGTATAGATATCTCCCTC+CGG 0.617507 tig0044731:-3212 Msa1464900:CDS
TTATATTCACCAGATGAGTG+AGG 0.627176 tig0044731:+3818 Msa1464900:intergenic
GAATATAACAGCTTGAGTGA+TGG 0.627409 tig0044731:+2425 Msa1464900:intergenic
GTTCTTCTGACCCAATGGAA+TGG 0.630104 tig0044731:+3788 Msa1464900:intergenic
TTCGTCCAAAACGTCCAGAA+CGG 0.636927 tig0044731:+1200 Msa1464900:intergenic
CCATTATCTTACATGCAAGG+TGG 0.645222 tig0044731:-725 Msa1464900:three_prime_UTR
AGGTGAACCTGAAGATCCGG+AGG 0.649252 tig0044731:+3196 Msa1464900:intergenic
CAGCCCAACTGACCATCACA+GGG 0.653439 tig0044731:+3868 Msa1464900:intergenic
ACTACAACAACAATGAAGAG+AGG 0.661536 tig0044731:+4298 Msa1464900:intergenic
TACAACAACAATGAAGAGAG+GGG 0.676280 tig0044731:+4300 Msa1464900:intergenic
AAAATGATTAAAGATAGTGA+CGG 0.682155 tig0044731:+4326 Msa1464900:intergenic
AAAGCGTTGGAGAAGACACA+AGG 0.685686 tig0044731:-3467 Msa1464900:five_prime_UTR
ACGGAGTTCATGTAGTGTCG+GGG 0.690010 tig0044731:-3434 Msa1464900:five_prime_UTR
GACACAAGGAAACTTGAACA+CGG 0.692105 tig0044731:-3453 Msa1464900:five_prime_UTR
TCTGATGAAATGCTGAGCAG+AGG 0.698342 tig0044731:-3256 Msa1464900:CDS
GGTGAACCTGAAGATCCGGA+GGG 0.711398 tig0044731:+3197 Msa1464900:intergenic
CCGCTTTGGCAACATCATGG+TGG 0.713927 tig0044731:+4039 Msa1464900:intergenic
AGTTTATGACAGATCCTGTG+AGG 0.717164 tig0044731:-2638 Msa1464900:CDS
TGATTTCTGCAAAACCACCG+TGG 0.765068 tig0044731:+4069 Msa1464890:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTACTTATTTTAAAACA+TGG - tig0044731:1214-1233 Msa1464900:CDS 15.0%
!!! ATATTTTTCTTTTTTATTGC+AGG - tig0044731:1853-1872 Msa1464900:intron 15.0%
!!! TTGTTTAATTTTTAATGTGT+AGG - tig0044731:2425-2444 Msa1464900:CDS 15.0%
!! AAGGTAAATGAAAATTATAA+AGG - tig0044731:2750-2769 Msa1464900:intron 15.0%
!!! TAATATTTGTTTGTTATTAG+AGG - tig0044731:3693-3712 Msa1464900:intron 15.0%
!! TAAGAAATGTAACAATTAAA+TGG - tig0044731:3806-3825 Msa1464900:five_prime_UTR 15.0%
!! AAAATGATTAAAGATAGTGA+CGG + tig0044731:814-833 Msa0119830:intergenic 20.0%
!! GACTTATGAAATTTATTGAT+AGG + tig0044731:1374-1393 Msa1464900:intergenic 20.0%
!! AATAAATTTCATAAGTCAAG+AGG - tig0044731:1377-1396 Msa1464900:intron 20.0%
!! ATAAATTTCATAAGTCAAGA+GGG - tig0044731:1378-1397 Msa1464900:intron 20.0%
!! TCAAATTACAAAATTTCAGT+CGG + tig0044731:1533-1552 Msa1464900:intergenic 20.0%
!!! TGAAATTTTGTAATTTGAAC+AGG - tig0044731:1535-1554 Msa1464900:intron 20.0%
!!! ACAAACTGAAAATGTTATTT+TGG - tig0044731:1599-1618 Msa1464900:intron 20.0%
!!! AAAATGTTATTTTGGCAATT+GGG - tig0044731:1607-1626 Msa1464900:intron 20.0%
!! AATTTGTCTGAATTAGAAAT+TGG + tig0044731:2065-2084 Msa1464900:intergenic 20.0%
!! TTTCTAATTCAGACAAATTT+AGG - tig0044731:2066-2085 Msa1464900:intron 20.0%
!! ACAAATTTAGGTGATAAATA+GGG - tig0044731:2078-2097 Msa1464900:intron 20.0%
!!! AATTTTATGTTGATGTTGAA+AGG - tig0044731:2643-2662 Msa1464900:CDS 20.0%
!!! ATTTTATGTTGATGTTGAAA+GGG - tig0044731:2644-2663 Msa1464900:CDS 20.0%
!! GAAAATTATAAAGGTTCTTT+AGG - tig0044731:2759-2778 Msa1464900:intron 20.0%
!!! CTAGTCTTTATATTTACATA+TGG - tig0044731:2813-2832 Msa1464900:intron 20.0%
!! TTATATTTACATATGGTGAT+TGG - tig0044731:2820-2839 Msa1464900:intron 20.0%
!!! ATTGGTTATATATATCCTTT+TGG - tig0044731:2838-2857 Msa1464900:intron 20.0%
!! TATTATTATTACATACAGCA+AGG - tig0044731:3567-3586 Msa1464900:five_prime_UTR 20.0%
!!! TATTACTTGTTTCTTATAGT+TGG - tig0044731:4030-4049 Msa1464900:five_prime_UTR 20.0%
!!! ATTACTTGTTTCTTATAGTT+GGG - tig0044731:4031-4050 Msa1464900:five_prime_UTR 20.0%
!!! TTGCTATAAATTTTGTGAAA+AGG - tig0044731:4076-4095 Msa1464900:five_prime_UTR 20.0%
!!! TGCTATAAATTTTGTGAAAA+GGG - tig0044731:4077-4096 Msa1464900:five_prime_UTR 20.0%
!! AAAACTAGAGGTAATTTTGT+AGG + tig0044731:734-753 Msa0119830:intergenic 25.0%
!!! GGATTTTAACATAAAACTAG+AGG + tig0044731:746-765 Msa0119830:intergenic 25.0%
! TGTTGTCACAAATAGAAATA+AGG + tig0044731:907-926 Msa1464900:intergenic 25.0%
! AAGCATACAATAAGCTATAT+AGG + tig0044731:951-970 Msa1464900:intergenic 25.0%
!! AATTTTTCTCTGAATGCTAA+TGG - tig0044731:1414-1433 Msa1464900:intron 25.0%
!! AATAACATTTTCAGTTTGTG+AGG + tig0044731:1598-1617 Msa1464900:intergenic 25.0%
!!! GAAAATGTTATTTTGGCAAT+TGG - tig0044731:1606-1625 Msa1464900:intron 25.0%
! GACAAATTTAGGTGATAAAT+AGG - tig0044731:2077-2096 Msa1464900:intron 25.0%
! ATGAATATGTTGTCTTCATT+TGG - tig0044731:2228-2247 Msa1464900:CDS 25.0%
! ACCTCAATTTATAACTTAGT+TGG - tig0044731:2288-2307 Msa1464900:intron 25.0%
! TCCAACTAAGTTATAAATTG+AGG + tig0044731:2292-2311 Msa1464900:intergenic 25.0%
! AGTTAAATATCAGAAAACAC+AGG + tig0044731:2578-2597 Msa1464900:intergenic 25.0%
!! TGTGTTTTCTGATATTTAAC+TGG - tig0044731:2577-2596 Msa1464900:intron 25.0%
!!! TATATATATCCTTTTGGAAC+AGG - tig0044731:2844-2863 Msa1464900:intron 25.0%
! AGTTGTTAGTAGTTTATTCT+TGG - tig0044731:3037-3056 Msa1464900:intron 25.0%
! AAATAAAAAAACACATGGAC+TGG + tig0044731:3087-3106 Msa1464900:intergenic 25.0%
!!! CTGAATTCATCATATTTTAG+AGG + tig0044731:3113-3132 Msa1464900:intergenic 25.0%
!!! ATACTGATTCAAAGTAATCA+TGG + tig0044731:3188-3207 Msa1464900:intergenic 25.0%
!! AATTTTAAACCTACTGCAAA+AGG + tig0044731:3265-3284 Msa1464900:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG + tig0044731:3399-3418 Msa1464900:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG + tig0044731:3399-3418 Msa1464900:intergenic 25.0%
! CAAGTCAACATCAATATTTA+TGG + tig0044731:3627-3646 Msa1464900:intergenic 25.0%
!! AAAAGATAAAAGCACAAACA+GGG + tig0044731:3732-3751 Msa1464900:intergenic 25.0%
!! TGTTTGTGCTTTTATCTTTT+GGG - tig0044731:3732-3751 Msa1464900:five_prime_UTR 25.0%
! GAAATGTAACAATTAAATGG+AGG - tig0044731:3809-3828 Msa1464900:five_prime_UTR 25.0%
! TGTTGCTGATCTTATATAAA+AGG - tig0044731:4167-4186 Msa1464900:five_prime_UTR 25.0%
! GTTGCTGATCTTATATAAAA+GGG - tig0044731:4168-4187 Msa1464900:five_prime_UTR 25.0%
!! CTGAGATTAATTTTGTAAAC+TGG - tig0044731:4373-4392 Msa1464900:five_prime_UTR 25.0%
ATAGGAGATGTTGTCAAAAA+AGG + tig0044731:933-952 Msa1464900:intergenic 30.0%
ATAAATTGTGACCATTCCAT+TGG - tig0044731:1338-1357 Msa1464900:intron 30.0%
TAAATTGTGACCATTCCATT+GGG - tig0044731:1339-1358 Msa1464900:intron 30.0%
! AGGTATACTGTCTATGATTT+TGG - tig0044731:1453-1472 Msa1464900:intron 30.0%
!! GTCAATTAGTTTGCAATTGT+TGG + tig0044731:1495-1514 Msa1464900:intergenic 30.0%
! TTTCTTTCTTTTTCTCGTCA+AGG - tig0044731:1822-1841 Msa1464900:intron 30.0%
ATAAAATGACAGAGAAGGTA+AGG + tig0044731:1964-1983 Msa1464900:intergenic 30.0%
!!! ACCTTCTCTGTCATTTTATT+TGG - tig0044731:1965-1984 Msa1464900:intron 30.0%
TCCAAATAAAATGACAGAGA+AGG + tig0044731:1969-1988 Msa1464900:intergenic 30.0%
!!! CTCTGTCATTTTATTTGGAA+TGG - tig0044731:1970-1989 Msa1464900:intron 30.0%
CTACTTAGCAAAGTTGTAAT+TGG + tig0044731:2022-2041 Msa1464900:intergenic 30.0%
ACTAAAACCAATCATCAAAC+AGG + tig0044731:2124-2143 Msa1464900:intergenic 30.0%
AAAATCTGTATCAGCTATAG+AGG + tig0044731:2207-2226 Msa1464900:intergenic 30.0%
AGGTAAAGTTTCAGATGATT+GGG + tig0044731:2272-2291 Msa1464900:intergenic 30.0%
ACTTAGTTGGATGTATCTTT+AGG - tig0044731:2301-2320 Msa1464900:intron 30.0%
CTTAGTTGGATGTATCTTTA+GGG - tig0044731:2302-2321 Msa1464900:intron 30.0%
! TTACTCTTGTTGTAAACTTG+TGG - tig0044731:2358-2377 Msa1464900:intron 30.0%
ATTCAGAGACTACATAAGTT+TGG + tig0044731:2406-2425 Msa1464900:intergenic 30.0%
! TCAATTCATCACGTTTTACA+AGG + tig0044731:2527-2546 Msa1464900:intergenic 30.0%
AAAACGTGATGAATTGACAT+TGG - tig0044731:2530-2549 Msa1464900:intron 30.0%
! ATTTTCATTTACCTTTCGCT+TGG + tig0044731:2745-2764 Msa1464900:intergenic 30.0%
! TATAAAGGTTCTTTAGGAAC+AGG - tig0044731:2765-2784 Msa1464900:intron 30.0%
AAGAGAAAGAGATGCAATTA+TGG - tig0044731:2937-2956 Msa1464900:intron 30.0%
!! TATTGATAACGACTGATGTT+TGG - tig0044731:2987-3006 Msa1464900:intron 30.0%
!! ATTGATAACGACTGATGTTT+GGG - tig0044731:2988-3007 Msa1464900:intron 30.0%
GGCACAAATAAAAAAACACA+TGG + tig0044731:3092-3111 Msa1464900:intergenic 30.0%
ATCAAATTCCGTGTAAAACT+GGG + tig0044731:3293-3312 Msa1464900:intergenic 30.0%
! CAAAAGATAAAAGCACAAAC+AGG + tig0044731:3733-3752 Msa1464900:intergenic 30.0%
! CTGTTTGTGCTTTTATCTTT+TGG - tig0044731:3731-3750 Msa1464900:five_prime_UTR 30.0%
! TCTGAAGTAAGTAGTTAGTA+TGG - tig0044731:3996-4015 Msa1464900:five_prime_UTR 30.0%
ATAAGATCAGCAACATTCAT+CGG + tig0044731:4162-4181 Msa1464900:intergenic 30.0%
GTGTTTGTCAAATTTATGCT+AGG - tig0044731:4216-4235 Msa1464900:five_prime_UTR 30.0%
GTCAAATTTATGCTAGGAAT+TGG - tig0044731:4222-4241 Msa1464900:five_prime_UTR 30.0%
CTTATGAAACTCTTGACATA+TGG - tig0044731:4284-4303 Msa1464900:five_prime_UTR 30.0%
!!! GTTTACTTTTTTTGCCGATA+CGG - tig0044731:4350-4369 Msa1464900:five_prime_UTR 30.0%
AAAATTAATCTCAGCCGTAT+CGG + tig0044731:4367-4386 Msa1464900:intergenic 30.0%
TACAACAACAATGAAGAGAG+GGG + tig0044731:840-859 Msa0119830:intergenic 35.0%
CTACAACAACAATGAAGAGA+GGG + tig0044731:841-860 Msa0119830:intergenic 35.0%
ACTACAACAACAATGAAGAG+AGG + tig0044731:842-861 Msa0119830:intergenic 35.0%
! CTCTTCATTGTTGTTGTAGT+TGG - tig0044731:842-861 Msa1464900:three_prime_UTR 35.0%
! AAAGTGCATGTTTTGTACCA+CGG - tig0044731:1051-1070 Msa1464900:CDS 35.0%
TATATTCACCAGATGAGTGA+GGG + tig0044731:1321-1340 Msa1464900:intergenic 35.0%
TTATATTCACCAGATGAGTG+AGG + tig0044731:1322-1341 Msa1464900:intergenic 35.0%
TTGTAATTTGAACAGGTTGC+AGG - tig0044731:1542-1561 Msa1464900:intron 35.0%
TTTAATTGTGTCTCCGACAA+GGG - tig0044731:1566-1585 Msa1464900:intron 35.0%
! TTTTGATCATGTCAAGGACT+CGG + tig0044731:1737-1756 Msa1464900:intergenic 35.0%
! TTCTCCTTTTGATCATGTCA+AGG + tig0044731:1743-1762 Msa1464900:intergenic 35.0%
TTTGCTAAGTAGACTTCACA+AGG - tig0044731:2030-2049 Msa1464900:intron 35.0%
GGTGATAAATAGGGTTAAAG+AGG - tig0044731:2087-2106 Msa1464900:intron 35.0%
TAACAACATAATTTCCCCTC+AGG + tig0044731:2179-2198 Msa1464900:intergenic 35.0%
GAGGTAAAGTTTCAGATGAT+TGG + tig0044731:2273-2292 Msa1464900:intergenic 35.0%
! TACGCTACCTCATGAAATTT+TGG - tig0044731:2464-2483 Msa1464900:CDS 35.0%
GTCATCTCCAAAATTTCATG+AGG + tig0044731:2474-2493 Msa1464900:intergenic 35.0%
TTATGTTGATGTTGAAAGGG+AGG - tig0044731:2647-2666 Msa1464900:CDS 35.0%
GAATATAACAGCTTGAGTGA+TGG + tig0044731:2715-2734 Msa1464900:intergenic 35.0%
!!! ATATATCCTTTTGGAACAGG+TGG - tig0044731:2847-2866 Msa1464900:intron 35.0%
TTCACTATCTCATCAATGCA+CGG - tig0044731:2902-2921 Msa1464900:intron 35.0%
ATTGCATCTCTTTCTCTTTG+AGG + tig0044731:2935-2954 Msa1464900:intergenic 35.0%
ATTATGGATGAATTTCGTGC+TGG - tig0044731:2953-2972 Msa1464900:intron 35.0%
!!! AAAAACTAGCCTTTTGCAGT+AGG - tig0044731:3253-3272 Msa1464900:CDS 35.0%
GATCAAATTCCGTGTAAAAC+TGG + tig0044731:3294-3313 Msa1464900:intergenic 35.0%
! GTCAGCAATTACTGTGTTTT+GGG + tig0044731:3528-3547 Msa1464900:intergenic 35.0%
ATATCTTCCTACTTCTGTTC+AGG + tig0044731:3550-3569 Msa1464900:intergenic 35.0%
!! TGTGCTTTTATCTTTTGGGT+CGG - tig0044731:3736-3755 Msa1464900:five_prime_UTR 35.0%
TGATAACAGAAACAAGTGCA+CGG + tig0044731:3854-3873 Msa1464900:intergenic 35.0%
ATGTACAGCTCTCGATTATT+TGG + tig0044731:3905-3924 Msa1464900:intergenic 35.0%
AAAAGTAAACCTTCATCCCT+GGG + tig0044731:4340-4359 Msa1464900:intergenic 35.0%
AAAAAGTAAACCTTCATCCC+TGG + tig0044731:4341-4360 Msa1464900:intergenic 35.0%
TGTCCATTATCTTACATGCA+AGG - tig0044731:4409-4428 Msa1464900:five_prime_UTR 35.0%
GAGACGCACGAGTTAAATAT+TGG + tig0044731:767-786 Msa0119830:intergenic 40.0%
! TAGTTGGCACTTTGACTTCT+CGG - tig0044731:858-877 Msa1464900:three_prime_UTR 40.0%
AGTTCAACATGCCCAAATCA+AGG + tig0044731:1139-1158 Msa1464900:intergenic 40.0%
GATTTGGGCATGTTGAACTA+TGG - tig0044731:1140-1159 Msa1464900:intron 40.0%
TATTTGAGAATGCCCTGTGA+TGG - tig0044731:1257-1276 Msa1464900:CDS 40.0%
AGTATACCTGTCATGGTCAT+AGG + tig0044731:1442-1461 Msa1464900:intergenic 40.0%
CATAGACAGTATACCTGTCA+TGG + tig0044731:1449-1468 Msa1464900:intergenic 40.0%
CTTTAATTGTGTCTCCGACA+AGG - tig0044731:1565-1584 Msa1464900:intron 40.0%
GACACAAGGAAACTTGAACA+CGG - tig0044731:1684-1703 Msa1464900:intron 40.0%
GAGTCCTTGACATGATCAAA+AGG - tig0044731:1736-1755 Msa1464900:intron 40.0%
TGTGTATAGATATCTCCCTC+CGG - tig0044731:1925-1944 Msa1464900:intron 40.0%
! TGATGTGCCTGTTTGATGAT+TGG - tig0044731:2114-2133 Msa1464900:intron 40.0%
CTCATTTCCACTCCTTCATA+TGG + tig0044731:2156-2175 Msa1464900:intergenic 40.0%
AGTTTGGAAAGAATGCAGAC+AGG + tig0044731:2390-2409 Msa1464900:intergenic 40.0%
AGTTTATGACAGATCCTGTG+AGG - tig0044731:2499-2518 Msa1464900:CDS 40.0%
ACGTGATGAATTGACATTGG+AGG - tig0044731:2533-2552 Msa1464900:intron 40.0%
TTGATGTTGAAAGGGAGGAA+TGG - tig0044731:2652-2671 Msa1464900:CDS 40.0%
ATTCTGTAACACCAAGCGAA+AGG - tig0044731:2731-2750 Msa1464900:intron 40.0%
! ATTTCACGCCCAGTTTTACA+CGG - tig0044731:3282-3301 Msa1464900:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + tig0044731:3328-3347 Msa1464900:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + tig0044731:3329-3348 Msa1464900:intergenic 40.0%
! GGTCAGCAATTACTGTGTTT+TGG + tig0044731:3529-3548 Msa1464900:intergenic 40.0%
ATGTGCTCAAGCATTCCAAT+TGG - tig0044731:3647-3666 Msa1464900:intron 40.0%
TGTGCTCAAGCATTCCAATT+GGG - tig0044731:3648-3667 Msa1464900:intron 40.0%
!! GTGCTTTTATCTTTTGGGTC+GGG - tig0044731:3737-3756 Msa1464900:five_prime_UTR 40.0%
!! TGCTTTTATCTTTTGGGTCG+GGG - tig0044731:3738-3757 Msa1464900:five_prime_UTR 40.0%
!! GTGCACTTGTTTCTGTTATC+AGG - tig0044731:3853-3872 Msa1464900:five_prime_UTR 40.0%
ATCGAGAGCTGTACATTCAT+CGG - tig0044731:3909-3928 Msa1464900:five_prime_UTR 40.0%
!! ACGTTTTGGACGAAAGGTAT+TGG - tig0044731:3946-3965 Msa1464900:five_prime_UTR 40.0%
!!! CGTTTTGGACGAAAGGTATT+GGG - tig0044731:3947-3966 Msa1464900:five_prime_UTR 40.0%
CTTATAGTTGGGCCTAATCA+TGG - tig0044731:4042-4061 Msa1464900:five_prime_UTR 40.0%
AAGGGCAATGCAGTATATGT+TGG - tig0044731:4186-4205 Msa1464900:five_prime_UTR 40.0%
CCACCTTGCATGTAAGATAA+TGG + tig0044731:4415-4434 Msa1464900:intergenic 40.0%
CCATTATCTTACATGCAAGG+TGG - tig0044731:4412-4431 Msa1464900:five_prime_UTR 40.0%
TGATTTCTGCAAAACCACCG+TGG + tig0044731:1071-1090 Msa1464900:intergenic 45.0%
!! CGGTGGTTTTGCAGAAATCA+TGG - tig0044731:1071-1090 Msa1464900:intron 45.0%
ATGTTGCCAAAGCGGTCTTA+TGG - tig0044731:1106-1125 Msa1464900:intron 45.0%
TATGGTGGCTCACCTTGATT+TGG - tig0044731:1124-1143 Msa1464900:intron 45.0%
ATGGTGGCTCACCTTGATTT+GGG - tig0044731:1125-1144 Msa1464900:intron 45.0%
GTTCTTCTGACCCAATGGAA+TGG + tig0044731:1352-1371 Msa1464900:intergenic 45.0%
GATAGGTTCTTCTGACCCAA+TGG + tig0044731:1357-1376 Msa1464900:intergenic 45.0%
ATACGAGCACATGCATGCAT+TGG - tig0044731:1642-1661 Msa1464900:intron 45.0%
!! AAAGCGTTGGAGAAGACACA+AGG - tig0044731:1670-1689 Msa1464900:intron 45.0%
ACACGGAGTTCATGTAGTGT+CGG - tig0044731:1701-1720 Msa1464900:intron 45.0%
! AGCTATCAAGTTGCTTGTGC+TGG - tig0044731:1776-1795 Msa1464900:intron 45.0%
TCTGATGAAATGCTGAGCAG+AGG - tig0044731:1881-1900 Msa1464900:intron 45.0%
GTAAGGTGAACCTGAAGATC+CGG + tig0044731:1947-1966 Msa1464900:intergenic 45.0%
AGTGACCTGACACCATATGA+AGG - tig0044731:2141-2160 Msa1464900:CDS 45.0%
! CGTTTTACAAGGATCCTCAC+AGG + tig0044731:2516-2535 Msa1464900:intergenic 45.0%
ATTACCCGCCTCATGATTAC+AGG - tig0044731:2611-2630 Msa1464900:CDS 45.0%
TTACCCGCCTCATGATTACA+GGG - tig0044731:2612-2631 Msa1464900:CDS 45.0%
GGTCACTGGTCAAACAAGTT+AGG + tig0044731:3066-3085 Msa1464900:intergenic 45.0%
!! AAAACACATGGACTGGTCAC+TGG + tig0044731:3080-3099 Msa1464900:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG + tig0044731:3324-3343 Msa1464900:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + tig0044731:3330-3349 Msa1464900:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - tig0044731:3327-3346 Msa1464900:intron 45.0%
GTGGGATAAAGCTTGGTTGT+TGG - tig0044731:3334-3353 Msa1464900:intron 45.0%
TTGCTGACCTGAACAGAAGT+AGG - tig0044731:3540-3559 Msa1464900:five_prime_UTR 45.0%
GAGCTGTACATTCATCGGAT+TGG - tig0044731:3914-3933 Msa1464900:five_prime_UTR 45.0%
TTCGTCCAAAACGTCCAGAA+CGG + tig0044731:3940-3959 Msa1464900:intergenic 45.0%
!! TTCTGGACGTTTTGGACGAA+AGG - tig0044731:3940-3959 Msa1464900:five_prime_UTR 45.0%
ACACCCTGCAAACCATGATT+AGG + tig0044731:4057-4076 Msa1464900:intergenic 45.0%
! GTGCATGTTTTGTACCACGG+TGG - tig0044731:1054-1073 Msa1464900:CDS 50.0%
CCACCATGATGTTGCCAAAG+CGG - tig0044731:1098-1117 Msa1464900:intron 50.0%
AGACCGCTTTGGCAACATCA+TGG + tig0044731:1104-1123 Msa1464900:intergenic 50.0%
! TTGCCAAAGCGGTCTTATGG+TGG - tig0044731:1109-1128 Msa1464900:intron 50.0%
AATGCCCTGTGATGGTCAGT+TGG - tig0044731:1265-1284 Msa1464900:CDS 50.0%
ATGCCCTGTGATGGTCAGTT+GGG - tig0044731:1266-1285 Msa1464900:intron 50.0%
! GGTCAGTTGGGCTGTTCTTT+TGG - tig0044731:1278-1297 Msa1464900:intron 50.0%
!!! CTTTTGGTTAGCCTGCTCAG+AGG - tig0044731:1294-1313 Msa1464900:intron 50.0%
ATGGAGCCTATGACCATGAC+AGG - tig0044731:1433-1452 Msa1464900:intron 50.0%
TGTGTCTCCGACAAGGGAAT+TGG - tig0044731:1572-1591 Msa1464900:intron 50.0%
TGTGAGGCCAATTCCCTTGT+CGG + tig0044731:1582-1601 Msa1464900:intergenic 50.0%
! TGCATTGGAGGCAAAAGCGT+TGG - tig0044731:1657-1676 Msa1464900:intron 50.0%
CACGGAGTTCATGTAGTGTC+GGG - tig0044731:1702-1721 Msa1464900:intron 50.0%
ACGGAGTTCATGTAGTGTCG+GGG - tig0044731:1703-1722 Msa1464900:intron 50.0%
ATATCTCCCTCCGGATCTTC+AGG - tig0044731:1934-1953 Msa1464900:intron 50.0%
CCACTCCTTCATATGGTGTC+AGG + tig0044731:2149-2168 Msa1464900:intergenic 50.0%
CCTGACACCATATGAAGGAG+TGG - tig0044731:2146-2165 Msa1464900:CDS 50.0%
AAGGAGTGGAAATGAGCCTG+AGG - tig0044731:2160-2179 Msa1464900:CDS 50.0%
AGGAGTGGAAATGAGCCTGA+GGG - tig0044731:2161-2180 Msa1464900:CDS 50.0%
!! GGATGTATCTTTAGGGTCCG+TGG - tig0044731:2309-2328 Msa1464900:intron 50.0%
CGCACATCACTCCAGTAACT+GGG + tig0044731:2336-2355 Msa1464900:intergenic 50.0%
ACGCACATCACTCCAGTAAC+TGG + tig0044731:2337-2356 Msa1464900:intergenic 50.0%
ATGCCCTGTAATCATGAGGC+GGG + tig0044731:2618-2637 Msa1464900:intergenic 50.0%
GATGCCCTGTAATCATGAGG+CGG + tig0044731:2619-2638 Msa1464900:intergenic 50.0%
CCTGATGCCCTGTAATCATG+AGG + tig0044731:2622-2641 Msa1464900:intergenic 50.0%
! CCTCATGATTACAGGGCATC+AGG - tig0044731:2619-2638 Msa1464900:CDS 50.0%
!!! TCCTTTTGGAACAGGTGGAC+TGG - tig0044731:2852-2871 Msa1464900:intron 50.0%
ACCAGTCCACCTGTTCCAAA+AGG + tig0044731:2856-2875 Msa1464900:intergenic 50.0%
TCGTGGACTTGATGTACAGC+AGG - tig0044731:3012-3031 Msa1464900:intron 50.0%
ACTAAGTGGGGTCGGTTACA+TGG + tig0044731:3316-3335 Msa1464900:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG - tig0044731:3315-3334 Msa1464900:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG - tig0044731:3316-3335 Msa1464900:intron 50.0%
AGCACAAGTGCATGCCCAAT+TGG + tig0044731:3665-3684 Msa1464900:intergenic 50.0%
!! TATCTTTTGGGTCGGGGTGA+AGG - tig0044731:3744-3763 Msa1464900:five_prime_UTR 50.0%
!! ATTCATCGGATTGGCCGTTC+TGG - tig0044731:3923-3942 Msa1464900:five_prime_UTR 50.0%
!! ATTGGCCGTTCTGGACGTTT+TGG - tig0044731:3932-3951 Msa1464900:five_prime_UTR 50.0%
! TGGGCCTAATCATGGTTTGC+AGG - tig0044731:4050-4069 Msa1464900:five_prime_UTR 50.0%
! GGGCCTAATCATGGTTTGCA+GGG - tig0044731:4051-4070 Msa1464900:five_prime_UTR 50.0%
TTGTTTGCTCGACTGAACCC+AGG - tig0044731:4320-4339 Msa1464900:five_prime_UTR 50.0%
TGTTTGCTCGACTGAACCCA+GGG - tig0044731:4321-4340 Msa1464900:five_prime_UTR 50.0%
CCGCTTTGGCAACATCATGG+TGG + tig0044731:1101-1120 Msa1464900:intergenic 55.0%
GAGCCACCATAAGACCGCTT+TGG + tig0044731:1115-1134 Msa1464900:intergenic 55.0%
CAGCCCAACTGACCATCACA+GGG + tig0044731:1272-1291 Msa1464900:intergenic 55.0%
ACAGCCCAACTGACCATCAC+AGG + tig0044731:1273-1292 Msa1464900:intergenic 55.0%
TCAGAGGTCCCTCACTCATC+TGG - tig0044731:1310-1329 Msa1464900:intron 55.0%
CGAGCACATGCATGCATTGG+AGG - tig0044731:1645-1664 Msa1464900:intron 55.0%
ATCATGTCAAGGACTCGGCC+AGG + tig0044731:1732-1751 Msa1464900:intergenic 55.0%
GGTGAACCTGAAGATCCGGA+GGG + tig0044731:1943-1962 Msa1464900:intergenic 55.0%
AGGTGAACCTGAAGATCCGG+AGG + tig0044731:1944-1963 Msa1464900:intergenic 55.0%
GGAGTGGAAATGAGCCTGAG+GGG - tig0044731:2162-2181 Msa1464900:CDS 55.0%
CACTCCAGTAACTGGGACCA+CGG + tig0044731:2329-2348 Msa1464900:intergenic 55.0%
ACGACTGATGTTTGGGCTCG+TGG - tig0044731:2995-3014 Msa1464900:intron 55.0%
TCGACTGAACCCAGGGATGA+AGG - tig0044731:4328-4347 Msa1464900:five_prime_UTR 55.0%
TGAGTGAGGGACCTCTGAGC+AGG + tig0044731:1308-1327 Msa1464900:intergenic 60.0%
! CATGTAGTGTCGGGGACTCC+TGG - tig0044731:1711-1730 Msa1464900:intron 60.0%
GGGTCCGTGGTCCCAGTTAC+TGG - tig0044731:2322-2341 Msa1464900:intron 65.0%
Chromosome Type Strat End Strand Name
tig0044731 gene 686 4473 686 ID=Msa1464900;Name=Msa1464900
tig0044731 mRNA 686 4473 686 ID=Msa1464900-mRNA-1;Parent=Msa1464900;Name=Msa1464900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=959|1|1|1|1|1|8|288|242
tig0044731 exon 686 1087 686 ID=Msa1464900-mRNA-1:exon:24628;Parent=Msa1464900-mRNA-1
tig0044731 exon 1198 1284 1198 ID=Msa1464900-mRNA-1:exon:24627;Parent=Msa1464900-mRNA-1
tig0044731 exon 2126 2293 2126 ID=Msa1464900-mRNA-1:exon:24626;Parent=Msa1464900-mRNA-1
tig0044731 exon 2407 2526 2407 ID=Msa1464900-mRNA-1:exon:24625;Parent=Msa1464900-mRNA-1
tig0044731 exon 2605 2712 2605 ID=Msa1464900-mRNA-1:exon:24624;Parent=Msa1464900-mRNA-1
tig0044731 exon 3204 3284 3204 ID=Msa1464900-mRNA-1:exon:24623;Parent=Msa1464900-mRNA-1
tig0044731 exon 3362 3602 3362 ID=Msa1464900-mRNA-1:exon:24622;Parent=Msa1464900-mRNA-1
tig0044731 exon 3705 4473 3705 ID=Msa1464900-mRNA-1:exon:24621;Parent=Msa1464900-mRNA-1
tig0044731 five_prime_UTR 3705 4473 3705 ID=Msa1464900-mRNA-1:five_prime_utr;Parent=Msa1464900-mRNA-1
tig0044731 five_prime_UTR 3413 3602 3413 ID=Msa1464900-mRNA-1:five_prime_utr;Parent=Msa1464900-mRNA-1
tig0044731 CDS 3362 3412 3362 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 3204 3284 3204 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 2605 2712 2605 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 2407 2526 2407 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 2126 2293 2126 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 1198 1284 1198 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 CDS 974 1087 974 ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1
tig0044731 three_prime_UTR 686 973 686 ID=Msa1464900-mRNA-1:three_prime_utr;Parent=Msa1464900-mRNA-1
Gene Sequence

>Msa1464900

ATGATCAAAAGGAGAACATTGTGCACAAGAGCTATCAAGTTGCTTGTGCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCTCCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTACCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAGGCAATTTTATGTTGATGTTGAAAGGGAGGAATGGAAATTTGATACTCTTTGTGATCTTTATGATTATTTGACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTATCTCATCAATGCACGGTGATATGCCTCAAAGAGAAAGAGATGCAATTATGGATGAATTTCGTGCTGGAACAACTCGAGTATTGATAACGACTGATGTTTGGGCTCGTGGACTTGATGTACAGCAGGTTTCTCTAGTTATTAATTATGATCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGGGTGTTGCTATAAATTTTGTGAAAAGGGATGATATCAAGATCTTAAGAGACATCGAGCAATATTACAGTATTCAGATTCTTGATCTGCCGATGAATGTTGCTGATCTTATATAA

Protein sequence

>Msa1464900

MIKRRTLCTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIRQFYVDVEREEWKFDTLCDLYDYLTITQAVIFCNTKRKVDWLTEKMRNNNFTISSMHGDMPQRERDAIMDEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKRDDIKILRDIEQYYSIQILDLPMNVADLI*