Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1464900 | XP_013463348.1 | 94.628 | 242 | 13 | 0 | 1 | 242 | 165 | 406 | 3.88e-167 | 477 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1464900 | sp|Q10I26|IF43B_ORYSJ | 89.256 | 242 | 26 | 0 | 1 | 242 | 163 | 404 | 2.46e-163 | 460 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1464900 | A0A072V6Z3 | 94.628 | 242 | 13 | 0 | 1 | 242 | 165 | 406 | 1.85e-167 | 477 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007440 | Msa1464900 | 0.828097 | 1.086493e-54 | -8.615850e-47 |
Msa0015610 | Msa1464900 | 0.818169 | 2.255112e-52 | -8.615850e-47 |
Msa0020930 | Msa1464900 | 0.831489 | 1.622112e-55 | -8.615850e-47 |
Msa0036140 | Msa1464900 | 0.808382 | 3.183698e-50 | -8.615850e-47 |
Msa0039330 | Msa1464900 | 0.808431 | 3.107804e-50 | -8.615850e-47 |
Msa0044330 | Msa1464900 | 0.803868 | 2.838676e-49 | -8.615850e-47 |
Msa0045920 | Msa1464900 | 0.912513 | 1.786316e-83 | -8.615850e-47 |
Msa0054480 | Msa1464900 | 0.802253 | 6.125434e-49 | -8.615850e-47 |
Msa0078900 | Msa1464900 | 0.828320 | 9.600712e-55 | -8.615850e-47 |
Msa0081930 | Msa1464900 | 0.812004 | 5.272360e-51 | -8.615850e-47 |
Msa0084380 | Msa1464900 | 0.808482 | 3.030179e-50 | -8.615850e-47 |
Msa0100090 | Msa1464900 | 0.800143 | 1.654814e-48 | -8.615850e-47 |
Msa0114060 | Msa1464900 | 0.823364 | 1.441074e-53 | -8.615850e-47 |
Msa1353980 | Msa1464900 | 0.803943 | 2.737870e-49 | -8.615850e-47 |
Msa1372150 | Msa1464900 | 0.801064 | 1.074012e-48 | -8.615850e-47 |
Msa1373030 | Msa1464900 | 0.838299 | 3.123183e-57 | -8.615850e-47 |
Msa1381610 | Msa1464900 | 0.806239 | 9.060412e-50 | -8.615850e-47 |
Msa1401530 | Msa1464900 | 0.800994 | 1.109981e-48 | -8.615850e-47 |
Msa1403340 | Msa1464900 | 0.842742 | 2.146751e-58 | -8.615850e-47 |
Msa1403890 | Msa1464900 | 0.805257 | 1.456842e-49 | -8.615850e-47 |
Msa1404300 | Msa1464900 | 0.800669 | 1.293178e-48 | -8.615850e-47 |
Msa1410100 | Msa1464900 | 0.805211 | 1.489163e-49 | -8.615850e-47 |
Msa1412640 | Msa1464900 | 0.807338 | 5.307754e-50 | -8.615850e-47 |
Msa1419960 | Msa1464900 | 0.812629 | 3.851730e-51 | -8.615850e-47 |
Msa1426030 | Msa1464900 | 0.806309 | 8.758341e-50 | -8.615850e-47 |
Msa1427230 | Msa1464900 | 0.815851 | 7.478242e-52 | -8.615850e-47 |
Msa1430680 | Msa1464900 | 0.821521 | 3.863565e-53 | -8.615850e-47 |
Msa1456670 | Msa1464900 | 0.802928 | 4.445597e-49 | -8.615850e-47 |
Msa1460050 | Msa1464900 | 0.826852 | 2.160335e-54 | -8.615850e-47 |
Msa1460830 | Msa1464900 | 0.809728 | 1.639004e-50 | -8.615850e-47 |
Msa0610430 | Msa1464900 | 0.824500 | 7.805673e-54 | -8.615850e-47 |
Msa0617640 | Msa1464900 | 0.825845 | 3.753746e-54 | -8.615850e-47 |
Msa0620960 | Msa1464900 | 0.805087 | 1.581461e-49 | -8.615850e-47 |
Msa0654010 | Msa1464900 | 0.818928 | 1.517459e-52 | -8.615850e-47 |
Msa0661190 | Msa1464900 | -0.813999 | 1.925923e-51 | -8.615850e-47 |
Msa0663390 | Msa1464900 | 0.814823 | 1.266250e-51 | -8.615850e-47 |
Msa0669440 | Msa1464900 | 0.802804 | 4.716020e-49 | -8.615850e-47 |
Msa0692830 | Msa1464900 | 0.808175 | 3.524420e-50 | -8.615850e-47 |
Msa0693380 | Msa1464900 | 0.811223 | 7.793437e-51 | -8.615850e-47 |
Msa0706400 | Msa1464900 | 0.807241 | 5.565769e-50 | -8.615850e-47 |
Msa0711100 | Msa1464900 | 0.822917 | 1.832625e-53 | -8.615850e-47 |
Msa0724210 | Msa1464900 | 0.818153 | 2.274467e-52 | -8.615850e-47 |
Msa0743950 | Msa1464900 | 0.805868 | 1.084501e-49 | -8.615850e-47 |
Msa0751850 | Msa1464900 | 0.812396 | 4.329229e-51 | -8.615850e-47 |
Msa0764720 | Msa1464900 | 0.808953 | 2.403304e-50 | -8.615850e-47 |
Msa0773840 | Msa1464900 | 0.816506 | 5.340853e-52 | -8.615850e-47 |
Msa0796700 | Msa1464900 | 0.811743 | 6.011051e-51 | -8.615850e-47 |
Msa0797970 | Msa1464900 | 0.810023 | 1.416461e-50 | -8.615850e-47 |
Msa0816700 | Msa1464900 | 0.806443 | 8.204504e-50 | -8.615850e-47 |
Msa0817460 | Msa1464900 | 0.811311 | 7.460618e-51 | -8.615850e-47 |
Msa0820850 | Msa1464900 | 0.810951 | 8.926986e-51 | -8.615850e-47 |
Msa0827140 | Msa1464900 | 0.901327 | 2.996248e-78 | -8.615850e-47 |
Msa0832150 | Msa1464900 | 0.821647 | 3.612661e-53 | -8.615850e-47 |
Msa0840820 | Msa1464900 | 0.815524 | 8.845847e-52 | -8.615850e-47 |
Msa0126610 | Msa1464900 | 0.808931 | 2.430339e-50 | -8.615850e-47 |
Msa0136070 | Msa1464900 | 0.804917 | 1.716149e-49 | -8.615850e-47 |
Msa0159930 | Msa1464900 | 0.827452 | 1.552202e-54 | -8.615850e-47 |
Msa0171540 | Msa1464900 | 0.821136 | 4.739053e-53 | -8.615850e-47 |
Msa0197660 | Msa1464900 | 0.814570 | 1.440582e-51 | -8.615850e-47 |
Msa0217680 | Msa1464900 | 0.836791 | 7.605023e-57 | -8.615850e-47 |
Msa0218270 | Msa1464900 | 0.812080 | 5.076356e-51 | -8.615850e-47 |
Msa0223010 | Msa1464900 | 0.806664 | 7.370553e-50 | -8.615850e-47 |
Msa1225210 | Msa1464900 | 0.920580 | 1.068618e-87 | -8.615850e-47 |
Msa1228590 | Msa1464900 | 0.817425 | 3.319293e-52 | -8.615850e-47 |
Msa1246510 | Msa1464900 | 0.821890 | 3.174409e-53 | -8.615850e-47 |
Msa1250890 | Msa1464900 | 0.803352 | 3.631471e-49 | -8.615850e-47 |
Msa1267060 | Msa1464900 | 0.803049 | 4.195589e-49 | -8.615850e-47 |
Msa1287460 | Msa1464900 | 0.817149 | 3.829837e-52 | -8.615850e-47 |
Msa1288550 | Msa1464900 | 0.804832 | 1.787419e-49 | -8.615850e-47 |
Msa1296760 | Msa1464900 | 0.853873 | 1.791750e-61 | -8.615850e-47 |
Msa1306840 | Msa1464900 | 0.816410 | 5.609102e-52 | -8.615850e-47 |
Msa1306920 | Msa1464900 | 0.804454 | 2.143715e-49 | -8.615850e-47 |
Msa1331000 | Msa1464900 | 0.817158 | 3.812905e-52 | -8.615850e-47 |
Msa1333410 | Msa1464900 | 0.800477 | 1.414892e-48 | -8.615850e-47 |
Msa1340260 | Msa1464900 | 0.818458 | 1.939551e-52 | -8.615850e-47 |
Msa1340270 | Msa1464900 | 0.803470 | 3.432454e-49 | -8.615850e-47 |
Msa0383800 | Msa1464900 | 0.817932 | 2.550838e-52 | -8.615850e-47 |
Msa0388280 | Msa1464900 | 0.810743 | 9.904998e-51 | -8.615850e-47 |
Msa0395970 | Msa1464900 | 0.811313 | 7.454050e-51 | -8.615850e-47 |
Msa0412840 | Msa1464900 | 0.825601 | 4.289740e-54 | -8.615850e-47 |
Msa0437960 | Msa1464900 | 0.915944 | 3.219797e-85 | -8.615850e-47 |
Msa0442200 | Msa1464900 | 0.809328 | 1.998140e-50 | -8.615850e-47 |
Msa0453330 | Msa1464900 | 0.808786 | 2.610356e-50 | -8.615850e-47 |
Msa0457510 | Msa1464900 | 0.816577 | 5.148779e-52 | -8.615850e-47 |
Msa0479970 | Msa1464900 | 0.811641 | 6.323661e-51 | -8.615850e-47 |
Msa0481530 | Msa1464900 | 0.806393 | 8.409480e-50 | -8.615850e-47 |
Msa1012830 | Msa1464900 | 0.810274 | 1.250552e-50 | -8.615850e-47 |
Msa1014540 | Msa1464900 | 0.810516 | 1.109033e-50 | -8.615850e-47 |
Msa1018100 | Msa1464900 | 0.806772 | 6.992402e-50 | -8.615850e-47 |
Msa1061680 | Msa1464900 | 0.822267 | 2.595233e-53 | -8.615850e-47 |
Msa1082500 | Msa1464900 | 0.826332 | 2.874436e-54 | -8.615850e-47 |
Msa1089040 | Msa1464900 | 0.822902 | 1.847305e-53 | -8.615850e-47 |
Msa0239800 | Msa1464900 | 0.813510 | 2.468285e-51 | -8.615850e-47 |
Msa0241390 | Msa1464900 | 0.847287 | 1.271909e-59 | -8.615850e-47 |
Msa0241470 | Msa1464900 | 0.801397 | 9.181874e-49 | -8.615850e-47 |
Msa0257500 | Msa1464900 | 0.838759 | 2.375435e-57 | -8.615850e-47 |
Msa0260680 | Msa1464900 | 0.813014 | 3.171023e-51 | -8.615850e-47 |
Msa0265380 | Msa1464900 | 0.846940 | 1.584118e-59 | -8.615850e-47 |
Msa0268090 | Msa1464900 | 0.800234 | 1.585554e-48 | -8.615850e-47 |
Msa0279220 | Msa1464900 | 0.826650 | 2.414049e-54 | -8.615850e-47 |
Msa0279240 | Msa1464900 | 0.841232 | 5.383487e-58 | -8.615850e-47 |
Msa0280090 | Msa1464900 | 0.815057 | 1.123611e-51 | -8.615850e-47 |
Msa0302400 | Msa1464900 | 0.804118 | 2.518782e-49 | -8.615850e-47 |
Msa0303360 | Msa1464900 | 0.843641 | 1.236602e-58 | -8.615850e-47 |
Msa0309770 | Msa1464900 | 0.849603 | 2.908998e-60 | -8.615850e-47 |
Msa0317510 | Msa1464900 | 0.806786 | 6.947239e-50 | -8.615850e-47 |
Msa0318980 | Msa1464900 | 0.849384 | 3.347909e-60 | -8.615850e-47 |
Msa0326520 | Msa1464900 | 0.808651 | 2.789253e-50 | -8.615850e-47 |
Msa0340450 | Msa1464900 | 0.817793 | 2.742059e-52 | -8.615850e-47 |
Msa0345970 | Msa1464900 | 0.804894 | 1.734725e-49 | -8.615850e-47 |
Msa0357830 | Msa1464900 | 0.805898 | 1.068593e-49 | -8.615850e-47 |
Msa1111870 | Msa1464900 | 0.818573 | 1.827204e-52 | -8.615850e-47 |
Msa1154280 | Msa1464900 | 0.811862 | 5.660767e-51 | -8.615850e-47 |
Msa1170120 | Msa1464900 | 0.885769 | 6.108293e-72 | -8.615850e-47 |
Msa1172400 | Msa1464900 | 0.800086 | 1.699840e-48 | -8.615850e-47 |
Msa1181250 | Msa1464900 | 0.814290 | 1.660804e-51 | -8.615850e-47 |
Msa1181330 | Msa1464900 | 0.810851 | 9.385554e-51 | -8.615850e-47 |
Msa1186950 | Msa1464900 | -0.808970 | 2.383763e-50 | -8.615850e-47 |
Msa1204530 | Msa1464900 | 0.828240 | 1.003651e-54 | -8.615850e-47 |
Msa1204630 | Msa1464900 | 0.811834 | 5.741718e-51 | -8.615850e-47 |
Msa1208880 | Msa1464900 | 0.800401 | 1.466469e-48 | -8.615850e-47 |
Msa0542090 | Msa1464900 | 0.816976 | 4.188023e-52 | -8.615850e-47 |
Msa0542130 | Msa1464900 | 0.817099 | 3.930256e-52 | -8.615850e-47 |
Msa0553460 | Msa1464900 | 0.809353 | 1.973349e-50 | -8.615850e-47 |
Msa0558690 | Msa1464900 | 0.824983 | 6.003479e-54 | -8.615850e-47 |
Msa0563840 | Msa1464900 | 0.804942 | 1.695743e-49 | -8.615850e-47 |
Msa0577500 | Msa1464900 | 0.816422 | 5.575957e-52 | -8.615850e-47 |
Msa0585560 | Msa1464900 | 0.804080 | 2.565254e-49 | -8.615850e-47 |
Msa0861130 | Msa1464900 | 0.800774 | 1.231088e-48 | -8.615850e-47 |
Msa0864250 | Msa1464900 | 0.801523 | 8.649727e-49 | -8.615850e-47 |
Msa0909110 | Msa1464900 | 0.804108 | 2.530669e-49 | -8.615850e-47 |
Msa0935910 | Msa1464900 | 0.811303 | 7.489376e-51 | -8.615850e-47 |
Msa0945440 | Msa1464900 | 0.800731 | 1.255854e-48 | -8.615850e-47 |
Msa0973600 | Msa1464900 | 0.809921 | 1.490070e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1464900 | MtrunA17_Chr2g0297261 | 94.628 | 242 | 13 | 0 | 1 | 242 | 165 | 406 | 3.57e-171 | 477 |
Msa1464900 | MtrunA17_Chr2g0329931 | 66.529 | 242 | 81 | 0 | 1 | 242 | 172 | 413 | 1.37e-119 | 347 |
Msa1464900 | MtrunA17_Chr8g0342861 | 66.116 | 242 | 82 | 0 | 1 | 242 | 172 | 413 | 1.48e-118 | 344 |
Msa1464900 | MtrunA17_Chr4g0070981 | 66.529 | 242 | 81 | 0 | 1 | 242 | 172 | 413 | 1.82e-118 | 344 |
Msa1464900 | MtrunA17_Chr2g0299681 | 66.942 | 242 | 80 | 0 | 1 | 242 | 172 | 413 | 2.26e-118 | 343 |
Msa1464900 | MtrunA17_Chr1g0169331 | 49.398 | 249 | 118 | 4 | 1 | 242 | 151 | 398 | 4.58e-77 | 238 |
Msa1464900 | MtrunA17_Chr8g0342851 | 53.704 | 216 | 99 | 1 | 28 | 242 | 104 | 319 | 6.58e-76 | 232 |
Msa1464900 | MtrunA17_Chr7g0247191 | 38.723 | 235 | 141 | 3 | 2 | 235 | 281 | 513 | 1.01e-51 | 175 |
Msa1464900 | MtrunA17_Chr7g0247181 | 37.872 | 235 | 143 | 3 | 2 | 235 | 271 | 503 | 1.72e-51 | 174 |
Msa1464900 | MtrunA17_Chr7g0247221 | 37.872 | 235 | 143 | 3 | 2 | 235 | 274 | 506 | 2.10e-51 | 174 |
Msa1464900 | MtrunA17_Chr1g0149251 | 36.929 | 241 | 148 | 4 | 1 | 238 | 97 | 336 | 6.66e-49 | 164 |
Msa1464900 | MtrunA17_Chr2g0330401 | 36.607 | 224 | 141 | 1 | 1 | 223 | 232 | 455 | 8.02e-47 | 162 |
Msa1464900 | MtrunA17_Chr4g0003441 | 35.685 | 241 | 151 | 4 | 1 | 238 | 241 | 480 | 4.63e-45 | 157 |
Msa1464900 | MtrunA17_Chr3g0107851 | 37.500 | 224 | 128 | 3 | 12 | 225 | 265 | 486 | 1.58e-41 | 149 |
Msa1464900 | MtrunA17_Chr2g0293631 | 37.500 | 224 | 130 | 4 | 12 | 226 | 642 | 864 | 5.93e-41 | 149 |
Msa1464900 | MtrunA17_Chr5g0442191 | 32.510 | 243 | 159 | 4 | 1 | 240 | 216 | 456 | 8.42e-40 | 144 |
Msa1464900 | MtrunA17_Chr7g0263771 | 34.440 | 241 | 157 | 1 | 2 | 241 | 264 | 504 | 1.02e-39 | 144 |
Msa1464900 | MtrunA17_Chr3g0121351 | 35.745 | 235 | 139 | 5 | 1 | 224 | 287 | 520 | 8.47e-39 | 142 |
Msa1464900 | MtrunA17_Chr7g0270131 | 31.048 | 248 | 156 | 4 | 1 | 236 | 368 | 612 | 2.59e-38 | 141 |
Msa1464900 | MtrunA17_Chr6g0449911 | 34.783 | 230 | 137 | 6 | 1 | 223 | 300 | 523 | 7.82e-38 | 140 |
Msa1464900 | MtrunA17_Chr1g0179761 | 34.118 | 255 | 143 | 7 | 1 | 231 | 216 | 469 | 1.30e-37 | 137 |
Msa1464900 | MtrunA17_Chr7g0271121 | 35.088 | 228 | 143 | 5 | 1 | 225 | 243 | 468 | 1.62e-37 | 139 |
Msa1464900 | MtrunA17_Chr3g0095031 | 32.773 | 238 | 155 | 4 | 1 | 235 | 225 | 460 | 3.08e-37 | 137 |
Msa1464900 | MtrunA17_Chr1g0193491 | 33.175 | 211 | 138 | 2 | 1 | 209 | 252 | 461 | 6.84e-37 | 137 |
Msa1464900 | MtrunA17_Chr2g0277821 | 34.419 | 215 | 139 | 2 | 10 | 223 | 652 | 865 | 5.07e-35 | 132 |
Msa1464900 | MtrunA17_Chr4g0076491 | 30.290 | 241 | 150 | 3 | 2 | 225 | 427 | 666 | 5.34e-35 | 132 |
Msa1464900 | MtrunA17_Chr4g0025141 | 34.314 | 204 | 119 | 4 | 43 | 231 | 14 | 217 | 9.93e-35 | 124 |
Msa1464900 | MtrunA17_Chr3g0137901 | 38.415 | 164 | 99 | 2 | 76 | 238 | 10 | 172 | 1.30e-34 | 122 |
Msa1464900 | MtrunA17_Chr1g0176041 | 32.340 | 235 | 145 | 5 | 1 | 223 | 295 | 527 | 1.44e-34 | 130 |
Msa1464900 | MtrunA17_Chr4g0063551 | 35.193 | 233 | 138 | 5 | 1 | 223 | 287 | 516 | 2.86e-34 | 129 |
Msa1464900 | MtrunA17_Chr6g0449741 | 30.290 | 241 | 148 | 4 | 2 | 225 | 389 | 626 | 5.98e-34 | 129 |
Msa1464900 | MtrunA17_Chr1g0200181 | 32.407 | 216 | 142 | 3 | 1 | 215 | 290 | 502 | 1.78e-31 | 121 |
Msa1464900 | MtrunA17_Chr1g0157691 | 30.328 | 244 | 165 | 4 | 1 | 242 | 292 | 532 | 2.16e-31 | 121 |
Msa1464900 | MtrunA17_Chr7g0236841 | 29.646 | 226 | 158 | 1 | 12 | 237 | 155 | 379 | 4.16e-31 | 119 |
Msa1464900 | MtrunA17_Chr6g0483491 | 29.646 | 226 | 158 | 1 | 12 | 237 | 155 | 379 | 6.26e-31 | 118 |
Msa1464900 | MtrunA17_Chr4g0040761 | 30.263 | 228 | 156 | 2 | 10 | 235 | 162 | 388 | 1.85e-29 | 116 |
Msa1464900 | MtrunA17_Chr3g0098121 | 31.507 | 219 | 142 | 3 | 12 | 225 | 298 | 513 | 8.59e-28 | 111 |
Msa1464900 | MtrunA17_Chr2g0310581 | 30.180 | 222 | 151 | 2 | 13 | 231 | 199 | 419 | 1.87e-27 | 109 |
Msa1464900 | MtrunA17_Chr2g0309551 | 25.581 | 258 | 151 | 3 | 15 | 231 | 272 | 529 | 1.95e-26 | 107 |
Msa1464900 | MtrunA17_Chr5g0409981 | 31.863 | 204 | 135 | 2 | 12 | 211 | 252 | 455 | 1.98e-26 | 106 |
Msa1464900 | MtrunA17_Chr2g0300291 | 30.594 | 219 | 144 | 2 | 12 | 225 | 288 | 503 | 2.75e-26 | 107 |
Msa1464900 | MtrunA17_Chr8g0347151 | 27.083 | 240 | 145 | 3 | 11 | 236 | 355 | 578 | 3.39e-26 | 106 |
Msa1464900 | MtrunA17_Chr6g0461751 | 31.674 | 221 | 134 | 5 | 12 | 223 | 289 | 501 | 2.65e-25 | 103 |
Msa1464900 | MtrunA17_Chr8g0347161 | 29.167 | 240 | 146 | 5 | 11 | 239 | 256 | 482 | 2.84e-25 | 103 |
Msa1464900 | MtrunA17_Chr8g0347171 | 27.686 | 242 | 151 | 5 | 11 | 241 | 314 | 542 | 1.02e-24 | 102 |
Msa1464900 | MtrunA17_Chr8g0386451 | 27.386 | 241 | 143 | 6 | 11 | 236 | 442 | 665 | 1.85e-24 | 101 |
Msa1464900 | MtrunA17_Chr3g0114081 | 28.378 | 222 | 139 | 3 | 10 | 212 | 164 | 384 | 2.12e-24 | 101 |
Msa1464900 | MtrunA17_Chr2g0307471 | 28.704 | 216 | 149 | 4 | 10 | 221 | 237 | 451 | 3.34e-23 | 97.8 |
Msa1464900 | MtrunA17_Chr4g0062301 | 29.358 | 218 | 149 | 4 | 12 | 225 | 246 | 462 | 5.91e-23 | 97.1 |
Msa1464900 | MtrunA17_Chr6g0475251 | 31.081 | 222 | 126 | 8 | 2 | 209 | 245 | 453 | 1.09e-22 | 96.3 |
Msa1464900 | MtrunA17_Chr1g0204391 | 30.516 | 213 | 139 | 4 | 2 | 209 | 202 | 410 | 1.67e-22 | 95.9 |
Msa1464900 | MtrunA17_Chr4g0058591 | 31.214 | 173 | 118 | 1 | 1 | 172 | 338 | 510 | 3.09e-22 | 94.7 |
Msa1464900 | MtrunA17_Chr4g0025101 | 29.825 | 228 | 102 | 7 | 27 | 234 | 7 | 196 | 4.74e-22 | 90.5 |
Msa1464900 | MtrunA17_Chr5g0443991 | 31.068 | 206 | 136 | 4 | 12 | 212 | 223 | 427 | 5.20e-22 | 94.4 |
Msa1464900 | MtrunA17_Chr4g0034411 | 29.279 | 222 | 149 | 6 | 8 | 224 | 220 | 438 | 5.25e-22 | 94.4 |
Msa1464900 | MtrunA17_Chr6g0466611 | 28.384 | 229 | 145 | 7 | 12 | 225 | 293 | 517 | 5.68e-20 | 88.6 |
Msa1464900 | MtrunA17_Chr1g0192021 | 25.483 | 259 | 145 | 5 | 11 | 226 | 178 | 431 | 9.71e-20 | 87.8 |
Msa1464900 | MtrunA17_Chr2g0301281 | 34.343 | 99 | 64 | 1 | 138 | 236 | 388 | 485 | 3.17e-17 | 80.5 |
Msa1464900 | MtrunA17_Chr4g0029191 | 34.343 | 99 | 64 | 1 | 138 | 236 | 391 | 488 | 4.42e-17 | 80.1 |
Msa1464900 | MtrunA17_Chr7g0236831 | 23.904 | 251 | 142 | 5 | 11 | 212 | 329 | 579 | 5.37e-17 | 79.7 |
Msa1464900 | MtrunA17_Chr4g0004301 | 27.941 | 204 | 131 | 4 | 26 | 223 | 258 | 451 | 1.44e-14 | 72.4 |
Msa1464900 | MtrunA17_Chr4g0062321 | 28.402 | 169 | 117 | 3 | 12 | 177 | 66 | 233 | 1.93e-14 | 70.5 |
Msa1464900 | MtrunA17_Chr5g0402301 | 26.842 | 190 | 107 | 5 | 83 | 242 | 26 | 213 | 2.89e-14 | 69.3 |
Msa1464900 | MtrunA17_Chr5g0434301 | 27.451 | 204 | 132 | 4 | 26 | 223 | 258 | 451 | 5.37e-14 | 70.9 |
Msa1464900 | MtrunA17_Chr5g0429221 | 23.982 | 221 | 153 | 4 | 12 | 226 | 150 | 361 | 5.68e-14 | 70.5 |
Msa1464900 | MtrunA17_Chr8g0377041 | 30.000 | 100 | 70 | 0 | 105 | 204 | 489 | 588 | 2.14e-13 | 69.3 |
Msa1464900 | MtrunA17_Chr8g0354761 | 29.600 | 125 | 85 | 1 | 99 | 220 | 243 | 367 | 4.87e-12 | 65.1 |
Msa1464900 | MtrunA17_Chr4g0058601 | 44.928 | 69 | 31 | 1 | 173 | 234 | 9 | 77 | 4.76e-11 | 58.5 |
Msa1464900 | MtrunA17_Chr1g0155201 | 25.455 | 220 | 144 | 7 | 10 | 226 | 35 | 237 | 7.84e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1464900 | AT3G19760.1 | 88.430 | 242 | 28 | 0 | 1 | 242 | 167 | 408 | 1.56e-162 | 456 |
Msa1464900 | AT1G51380.1 | 73.967 | 242 | 60 | 1 | 1 | 242 | 154 | 392 | 1.31e-132 | 379 |
Msa1464900 | AT3G13920.4 | 67.769 | 242 | 78 | 0 | 1 | 242 | 166 | 407 | 2.39e-121 | 351 |
Msa1464900 | AT3G13920.1 | 67.769 | 242 | 78 | 0 | 1 | 242 | 171 | 412 | 2.47e-121 | 352 |
Msa1464900 | AT3G13920.3 | 67.769 | 242 | 78 | 0 | 1 | 242 | 161 | 402 | 3.47e-121 | 351 |
Msa1464900 | AT1G54270.2 | 66.529 | 242 | 81 | 0 | 1 | 242 | 166 | 407 | 7.50e-119 | 345 |
Msa1464900 | AT1G54270.1 | 66.529 | 242 | 81 | 0 | 1 | 242 | 171 | 412 | 1.03e-118 | 345 |
Msa1464900 | AT1G72730.1 | 64.876 | 242 | 85 | 0 | 1 | 242 | 173 | 414 | 1.84e-116 | 339 |
Msa1464900 | AT3G13920.2 | 70.000 | 220 | 66 | 0 | 1 | 220 | 171 | 390 | 1.02e-111 | 327 |
Msa1464900 | AT3G13920.5 | 70.000 | 220 | 66 | 0 | 1 | 220 | 175 | 394 | 1.46e-111 | 327 |
Msa1464900 | AT1G51380.2 | 80.992 | 121 | 23 | 0 | 1 | 121 | 154 | 274 | 5.99e-67 | 208 |
Msa1464900 | AT4G00660.1 | 37.190 | 242 | 150 | 2 | 1 | 242 | 263 | 502 | 1.01e-51 | 175 |
Msa1464900 | AT4G00660.2 | 37.190 | 242 | 150 | 2 | 1 | 242 | 263 | 502 | 1.01e-51 | 175 |
Msa1464900 | AT3G61240.2 | 35.124 | 242 | 155 | 2 | 1 | 242 | 256 | 495 | 2.23e-47 | 164 |
Msa1464900 | AT3G61240.1 | 35.124 | 242 | 155 | 2 | 1 | 242 | 256 | 495 | 2.23e-47 | 164 |
Msa1464900 | AT2G45810.1 | 35.319 | 235 | 149 | 3 | 2 | 235 | 286 | 518 | 1.42e-46 | 162 |
Msa1464900 | AT5G11170.2 | 35.685 | 241 | 151 | 4 | 1 | 238 | 97 | 336 | 1.78e-46 | 158 |
Msa1464900 | AT1G55150.1 | 39.906 | 213 | 125 | 3 | 1 | 211 | 236 | 447 | 3.64e-46 | 160 |
Msa1464900 | AT1G55150.2 | 37.778 | 225 | 137 | 3 | 1 | 223 | 261 | 484 | 4.05e-46 | 161 |
Msa1464900 | AT5G11170.1 | 35.685 | 241 | 151 | 4 | 1 | 238 | 180 | 419 | 1.05e-45 | 158 |
Msa1464900 | AT5G11200.1 | 35.685 | 241 | 151 | 4 | 1 | 238 | 180 | 419 | 1.05e-45 | 158 |
Msa1464900 | AT5G63120.2 | 37.559 | 213 | 132 | 1 | 12 | 223 | 313 | 525 | 1.86e-43 | 154 |
Msa1464900 | AT3G53110.1 | 35.294 | 238 | 138 | 6 | 12 | 234 | 239 | 475 | 2.06e-43 | 153 |
Msa1464900 | AT3G06480.1 | 37.395 | 238 | 135 | 5 | 10 | 236 | 580 | 814 | 2.27e-43 | 156 |
Msa1464900 | AT3G09720.2 | 35.745 | 235 | 150 | 1 | 2 | 235 | 273 | 507 | 1.59e-41 | 149 |
Msa1464900 | AT3G09720.1 | 35.745 | 235 | 150 | 1 | 2 | 235 | 273 | 507 | 1.59e-41 | 149 |
Msa1464900 | AT3G01540.1 | 36.214 | 243 | 145 | 4 | 1 | 234 | 294 | 535 | 4.01e-40 | 146 |
Msa1464900 | AT3G01540.4 | 36.214 | 243 | 145 | 4 | 1 | 234 | 294 | 535 | 4.04e-40 | 146 |
Msa1464900 | AT3G01540.2 | 36.214 | 243 | 145 | 4 | 1 | 234 | 294 | 535 | 4.04e-40 | 146 |
Msa1464900 | AT3G01540.3 | 36.214 | 243 | 145 | 4 | 1 | 234 | 294 | 535 | 4.04e-40 | 146 |
Msa1464900 | AT1G20920.2 | 35.349 | 215 | 137 | 2 | 10 | 223 | 340 | 553 | 1.20e-39 | 145 |
Msa1464900 | AT5G26742.3 | 33.740 | 246 | 157 | 5 | 1 | 242 | 149 | 392 | 2.64e-39 | 144 |
Msa1464900 | AT5G14610.7 | 35.776 | 232 | 139 | 4 | 12 | 234 | 177 | 407 | 5.26e-39 | 141 |
Msa1464900 | AT5G14610.3 | 35.776 | 232 | 139 | 4 | 12 | 234 | 177 | 407 | 5.26e-39 | 141 |
Msa1464900 | AT1G51380.4 | 83.750 | 80 | 13 | 0 | 1 | 80 | 154 | 233 | 7.32e-39 | 137 |
Msa1464900 | AT3G22330.1 | 32.773 | 238 | 155 | 4 | 1 | 235 | 240 | 475 | 8.51e-39 | 142 |
Msa1464900 | AT1G51380.3 | 83.750 | 80 | 13 | 0 | 1 | 80 | 154 | 233 | 8.88e-39 | 137 |
Msa1464900 | AT3G22310.2 | 32.489 | 237 | 157 | 2 | 1 | 235 | 252 | 487 | 9.57e-39 | 142 |
Msa1464900 | AT3G22310.1 | 32.489 | 237 | 157 | 2 | 1 | 235 | 252 | 487 | 1.08e-38 | 142 |
Msa1464900 | AT1G20920.4 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT1G20920.6 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT1G20920.3 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT1G20920.7 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT1G20920.5 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT1G20920.1 | 35.349 | 215 | 137 | 2 | 10 | 223 | 678 | 891 | 1.17e-38 | 143 |
Msa1464900 | AT5G14610.2 | 35.776 | 232 | 139 | 4 | 12 | 234 | 308 | 538 | 1.55e-38 | 142 |
Msa1464900 | AT5G14610.6 | 35.776 | 232 | 139 | 4 | 12 | 234 | 308 | 538 | 1.64e-38 | 142 |
Msa1464900 | AT5G14610.5 | 35.776 | 232 | 139 | 4 | 12 | 234 | 316 | 546 | 1.72e-38 | 142 |
Msa1464900 | AT5G14610.1 | 35.776 | 232 | 139 | 4 | 12 | 234 | 376 | 606 | 2.22e-38 | 142 |
Msa1464900 | AT3G58510.1 | 35.470 | 234 | 141 | 4 | 1 | 225 | 293 | 525 | 2.27e-38 | 141 |
Msa1464900 | AT3G58510.3 | 35.470 | 234 | 141 | 4 | 1 | 225 | 293 | 525 | 2.27e-38 | 141 |
Msa1464900 | AT3G58510.2 | 35.470 | 234 | 141 | 4 | 1 | 225 | 293 | 525 | 2.27e-38 | 141 |
Msa1464900 | AT5G26742.1 | 34.649 | 228 | 144 | 4 | 1 | 225 | 242 | 467 | 2.48e-38 | 142 |
Msa1464900 | AT5G26742.2 | 34.649 | 228 | 144 | 4 | 1 | 225 | 242 | 467 | 2.49e-38 | 142 |
Msa1464900 | AT2G47330.1 | 31.301 | 246 | 161 | 3 | 1 | 241 | 365 | 607 | 4.25e-38 | 141 |
Msa1464900 | AT5G11200.3 | 30.142 | 282 | 152 | 4 | 1 | 238 | 180 | 460 | 5.89e-38 | 138 |
Msa1464900 | AT2G42520.2 | 34.468 | 235 | 144 | 5 | 1 | 225 | 301 | 535 | 2.59e-36 | 135 |
Msa1464900 | AT2G42520.1 | 34.468 | 235 | 144 | 5 | 1 | 225 | 301 | 535 | 2.59e-36 | 135 |
Msa1464900 | AT2G42520.3 | 34.468 | 235 | 144 | 5 | 1 | 225 | 301 | 535 | 2.59e-36 | 135 |
Msa1464900 | AT2G33730.1 | 31.535 | 241 | 147 | 2 | 2 | 225 | 454 | 693 | 3.04e-36 | 135 |
Msa1464900 | AT3G58570.1 | 32.766 | 235 | 148 | 5 | 1 | 225 | 288 | 522 | 2.59e-34 | 130 |
Msa1464900 | AT4G33370.1 | 33.182 | 220 | 143 | 3 | 1 | 219 | 243 | 459 | 5.59e-33 | 125 |
Msa1464900 | AT1G28180.1 | 33.628 | 226 | 144 | 4 | 2 | 225 | 114 | 335 | 8.91e-33 | 122 |
Msa1464900 | AT5G51280.1 | 32.870 | 216 | 141 | 3 | 1 | 215 | 292 | 504 | 4.01e-32 | 123 |
Msa1464900 | AT5G60990.1 | 29.362 | 235 | 165 | 1 | 1 | 235 | 154 | 387 | 1.24e-31 | 120 |
Msa1464900 | AT5G11200.2 | 36.571 | 175 | 108 | 3 | 66 | 238 | 305 | 478 | 2.79e-31 | 120 |
Msa1464900 | AT1G77030.1 | 29.515 | 227 | 159 | 1 | 10 | 235 | 172 | 398 | 2.04e-30 | 119 |
Msa1464900 | AT3G09620.1 | 31.120 | 241 | 127 | 5 | 7 | 238 | 534 | 744 | 3.49e-30 | 118 |
Msa1464900 | AT3G09620.2 | 31.120 | 241 | 127 | 5 | 7 | 238 | 535 | 745 | 3.59e-30 | 118 |
Msa1464900 | AT5G63630.1 | 26.829 | 246 | 150 | 3 | 10 | 241 | 208 | 437 | 7.16e-29 | 114 |
Msa1464900 | AT3G02065.1 | 31.278 | 227 | 149 | 5 | 1 | 223 | 113 | 336 | 7.79e-29 | 112 |
Msa1464900 | AT1G16280.1 | 31.982 | 222 | 135 | 6 | 13 | 225 | 205 | 419 | 8.39e-29 | 113 |
Msa1464900 | AT5G08610.1 | 27.755 | 245 | 147 | 3 | 11 | 241 | 537 | 765 | 1.51e-28 | 114 |
Msa1464900 | AT1G12770.2 | 25.818 | 275 | 157 | 3 | 3 | 232 | 259 | 531 | 2.19e-28 | 112 |
Msa1464900 | AT1G12770.1 | 25.818 | 275 | 157 | 3 | 3 | 232 | 259 | 531 | 2.19e-28 | 112 |
Msa1464900 | AT5G63630.2 | 26.829 | 246 | 150 | 3 | 10 | 241 | 402 | 631 | 3.45e-28 | 112 |
Msa1464900 | AT3G02065.3 | 31.278 | 227 | 149 | 5 | 1 | 223 | 250 | 473 | 6.87e-28 | 111 |
Msa1464900 | AT3G02065.2 | 31.278 | 227 | 149 | 5 | 1 | 223 | 250 | 473 | 6.87e-28 | 111 |
Msa1464900 | AT5G08620.1 | 27.347 | 245 | 148 | 3 | 11 | 241 | 235 | 463 | 8.22e-28 | 111 |
Msa1464900 | AT3G06480.2 | 35.227 | 176 | 107 | 4 | 10 | 181 | 580 | 752 | 3.96e-27 | 109 |
Msa1464900 | AT1G31970.1 | 28.112 | 249 | 168 | 4 | 1 | 238 | 255 | 503 | 7.59e-27 | 108 |
Msa1464900 | AT4G16630.1 | 31.481 | 216 | 146 | 1 | 12 | 225 | 314 | 529 | 1.01e-26 | 108 |
Msa1464900 | AT5G05450.1 | 30.275 | 218 | 136 | 3 | 10 | 212 | 166 | 382 | 1.46e-26 | 107 |
Msa1464900 | AT3G18600.1 | 31.163 | 215 | 144 | 3 | 10 | 221 | 235 | 448 | 5.49e-26 | 106 |
Msa1464900 | AT5G62190.1 | 30.493 | 223 | 130 | 4 | 2 | 211 | 239 | 449 | 1.54e-25 | 105 |
Msa1464900 | AT2G07750.1 | 28.279 | 244 | 137 | 5 | 11 | 236 | 531 | 754 | 3.86e-25 | 103 |
Msa1464900 | AT1G63250.1 | 28.631 | 241 | 140 | 6 | 11 | 236 | 484 | 707 | 6.56e-25 | 103 |
Msa1464900 | AT1G71370.1 | 29.665 | 209 | 140 | 3 | 10 | 212 | 166 | 373 | 1.80e-23 | 99.0 |
Msa1464900 | AT5G63120.3 | 33.333 | 162 | 107 | 1 | 12 | 172 | 313 | 474 | 2.78e-23 | 98.2 |
Msa1464900 | AT5G63120.4 | 33.333 | 162 | 107 | 1 | 12 | 172 | 313 | 474 | 2.78e-23 | 98.2 |
Msa1464900 | AT5G63120.5 | 33.333 | 162 | 107 | 1 | 12 | 172 | 313 | 474 | 2.78e-23 | 98.2 |
Msa1464900 | AT5G63120.1 | 33.333 | 162 | 107 | 1 | 12 | 172 | 313 | 474 | 2.86e-23 | 98.2 |
Msa1464900 | AT5G65900.1 | 30.233 | 215 | 147 | 2 | 10 | 221 | 300 | 514 | 7.53e-23 | 97.4 |
Msa1464900 | AT5G14610.4 | 33.929 | 168 | 108 | 3 | 12 | 177 | 316 | 482 | 2.61e-22 | 95.5 |
Msa1464900 | AT5G54910.1 | 30.000 | 220 | 145 | 6 | 12 | 225 | 219 | 435 | 3.47e-21 | 92.4 |
Msa1464900 | AT4G09730.1 | 27.897 | 233 | 141 | 8 | 12 | 225 | 264 | 488 | 1.23e-18 | 85.1 |
Msa1464900 | AT4G34910.1 | 25.660 | 265 | 152 | 5 | 6 | 228 | 195 | 456 | 5.55e-18 | 83.2 |
Msa1464900 | AT2G40700.1 | 38.202 | 89 | 55 | 0 | 138 | 226 | 380 | 468 | 3.33e-16 | 77.8 |
Msa1464900 | AT3G16840.2 | 27.273 | 132 | 93 | 1 | 102 | 230 | 494 | 625 | 2.35e-14 | 72.4 |
Msa1464900 | AT3G16840.1 | 27.273 | 132 | 93 | 1 | 102 | 230 | 493 | 624 | 2.39e-14 | 72.4 |
Msa1464900 | AT1G27880.2 | 29.412 | 119 | 84 | 0 | 105 | 223 | 483 | 601 | 3.23e-14 | 72.0 |
Msa1464900 | AT1G27880.1 | 29.412 | 119 | 84 | 0 | 105 | 223 | 483 | 601 | 3.25e-14 | 72.0 |
Msa1464900 | AT4G15850.1 | 26.794 | 209 | 125 | 8 | 22 | 218 | 256 | 448 | 4.20e-12 | 65.9 |
Msa1464900 | AT5G19210.1 | 35.556 | 90 | 55 | 2 | 138 | 224 | 214 | 303 | 2.30e-11 | 63.2 |
Msa1464900 | AT5G19210.3 | 35.556 | 90 | 55 | 2 | 138 | 224 | 214 | 303 | 2.30e-11 | 63.2 |
Msa1464900 | AT5G19210.2 | 35.556 | 90 | 55 | 2 | 138 | 224 | 371 | 460 | 2.41e-11 | 63.5 |
Find 108 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAACTGAAAATGTTATTT+TGG | 0.151334 | tig0044731:-3538 | Msa1464900:five_prime_UTR |
TGTTGCTGATCTTATATAAA+AGG | 0.182863 | tig0044731:-970 | Msa1464900:exon |
CTCTTCATTGTTGTTGTAGT+TGG | 0.238396 | tig0044731:-4295 | Msa1464900:five_prime_UTR |
ATGTACAGCTCTCGATTATT+TGG | 0.242192 | tig0044731:+1235 | Msa1464900:intergenic |
TACGCTACCTCATGAAATTT+TGG | 0.254057 | tig0044731:-2673 | Msa1464900:CDS |
TATGGTGGCTCACCTTGATT+TGG | 0.258292 | tig0044731:-4013 | Msa1464900:five_prime_UTR |
TCAAAATCCAAAATTGGATT+TGG | 0.296254 | tig0044731:-4465 | None:intergenic |
GGTCAGTTGGGCTGTTCTTT+TGG | 0.301651 | tig0044731:-3859 | Msa1464900:five_prime_UTR |
GAGACGCACGAGTTAAATAT+TGG | 0.302996 | tig0044731:+4373 | Msa1464900:intergenic |
AAGAGAAAGAGATGCAATTA+TGG | 0.315960 | tig0044731:-2200 | Msa1464900:CDS |
GTCAAATTTATGCTAGGAAT+TGG | 0.320658 | tig0044731:-915 | Msa1464900:three_prime_UTR |
ATTGGCCGTTCTGGACGTTT+TGG | 0.323765 | tig0044731:-1205 | Msa1464900:CDS |
TATTGATAACGACTGATGTT+TGG | 0.325693 | tig0044731:-2150 | Msa1464900:CDS |
ATATCTCCCTCCGGATCTTC+AGG | 0.332541 | tig0044731:-3203 | Msa1464900:intron |
GACTTATGAAATTTATTGAT+AGG | 0.338371 | tig0044731:+3766 | Msa1464900:intergenic |
TTGTAATTTGAACAGGTTGC+AGG | 0.352767 | tig0044731:-3595 | Msa1464900:intron |
TAGTTGGCACTTTGACTTCT+CGG | 0.353299 | tig0044731:-4279 | Msa1464900:five_prime_UTR |
AAGCATACAATAAGCTATAT+AGG | 0.357388 | tig0044731:+4189 | Msa1464900:intergenic |
GATTTGGGCATGTTGAACTA+TGG | 0.358630 | tig0044731:-3997 | Msa1464900:five_prime_UTR |
TGTTGTCACAAATAGAAATA+AGG | 0.360677 | tig0044731:+4233 | Msa1464900:intergenic |
CCACCTTGCATGTAAGATAA+TGG | 0.364408 | tig0044731:+725 | Msa1464900:intergenic |
ATTCATCGGATTGGCCGTTC+TGG | 0.374179 | tig0044731:-1214 | Msa1464900:CDS |
ATTGCATCTCTTTCTCTTTG+AGG | 0.376417 | tig0044731:+2205 | Msa1464900:intergenic |
ATGGTGGCTCACCTTGATTT+GGG | 0.377270 | tig0044731:-4012 | Msa1464900:five_prime_UTR |
ATTGATAACGACTGATGTTT+GGG | 0.390146 | tig0044731:-2149 | Msa1464900:CDS |
TGTGTCTCCGACAAGGGAAT+TGG | 0.408057 | tig0044731:-3565 | Msa1464900:five_prime_UTR |
CTTATGAAACTCTTGACATA+TGG | 0.410214 | tig0044731:-853 | Msa1464900:three_prime_UTR |
TCAGAGGTCCCTCACTCATC+TGG | 0.412635 | tig0044731:-3827 | Msa1464900:five_prime_UTR |
AGTATACCTGTCATGGTCAT+AGG | 0.424071 | tig0044731:+3698 | Msa1464900:intergenic |
ATGTTGCCAAAGCGGTCTTA+TGG | 0.436409 | tig0044731:-4031 | Msa1464900:five_prime_UTR |
CATGTAGTGTCGGGGACTCC+TGG | 0.441130 | tig0044731:-3426 | Msa1464900:five_prime_UTR |
TGTGAGGCCAATTCCCTTGT+CGG | 0.444766 | tig0044731:+3558 | Msa1464900:intergenic |
CCTCATGATTACAGGGCATC+AGG | 0.461625 | tig0044731:-2518 | Msa1464900:intron |
AAATCCAAAATTGGATTTGG+AGG | 0.462538 | tig0044731:-4462 | None:intergenic |
AATAAATTTCATAAGTCAAG+AGG | 0.463570 | tig0044731:-3760 | Msa1464900:five_prime_UTR |
CACGGAGTTCATGTAGTGTC+GGG | 0.464753 | tig0044731:-3435 | Msa1464900:five_prime_UTR |
ACGACTGATGTTTGGGCTCG+TGG | 0.476458 | tig0044731:-2142 | Msa1464900:CDS |
ACAGCCCAACTGACCATCAC+AGG | 0.477996 | tig0044731:+3867 | Msa1464900:intergenic |
CGAGCACATGCATGCATTGG+AGG | 0.480977 | tig0044731:-3492 | Msa1464900:five_prime_UTR |
GTTGCTGATCTTATATAAAA+GGG | 0.485003 | tig0044731:-969 | Msa1464900:exon |
ATAAATTGTGACCATTCCAT+TGG | 0.492230 | tig0044731:-3799 | Msa1464900:five_prime_UTR |
AGCTATCAAGTTGCTTGTGC+TGG | 0.499944 | tig0044731:-3361 | Msa1464900:intron |
ATGCCCTGTGATGGTCAGTT+GGG | 0.505958 | tig0044731:-3871 | Msa1464900:five_prime_UTR |
GTAAGGTGAACCTGAAGATC+CGG | 0.506742 | tig0044731:+3193 | Msa1464900:intergenic |
TCGACTGAACCCAGGGATGA+AGG | 0.510337 | tig0044731:-809 | Msa1464900:three_prime_UTR |
TGCATTGGAGGCAAAAGCGT+TGG | 0.520539 | tig0044731:-3480 | Msa1464900:five_prime_UTR |
ATCGAGAGCTGTACATTCAT+CGG | 0.523237 | tig0044731:-1228 | Msa1464900:CDS |
GAGCCACCATAAGACCGCTT+TGG | 0.523873 | tig0044731:+4025 | None:intergenic |
AAAAGTAAACCTTCATCCCT+GGG | 0.526364 | tig0044731:+800 | None:intergenic |
AAAATTGGATTTGGAGGGAA+GGG | 0.528315 | tig0044731:-4456 | None:intergenic |
GTGTTTGTCAAATTTATGCT+AGG | 0.528416 | tig0044731:-921 | Msa1464900:three_prime_UTR |
AATGCCCTGTGATGGTCAGT+TGG | 0.530582 | tig0044731:-3872 | Msa1464900:five_prime_UTR |
TAAATTGTGACCATTCCATT+GGG | 0.531754 | tig0044731:-3798 | Msa1464900:five_prime_UTR |
GAGTCCTTGACATGATCAAA+AGG | 0.531974 | tig0044731:-3401 | Msa1464900:exon |
TTATGTTGATGTTGAAAGGG+AGG | 0.536096 | tig0044731:-2490 | Msa1464900:CDS |
TGAGTGAGGGACCTCTGAGC+AGG | 0.537060 | tig0044731:+3832 | None:intergenic |
AATCCAAAATTGGATTTGGA+GGG | 0.538233 | tig0044731:-4461 | None:intergenic |
TTTAATTGTGTCTCCGACAA+GGG | 0.538538 | tig0044731:-3571 | Msa1464900:five_prime_UTR |
CTTTAATTGTGTCTCCGACA+AGG | 0.539027 | tig0044731:-3572 | Msa1464900:five_prime_UTR |
AGTTCAACATGCCCAAATCA+AGG | 0.542457 | tig0044731:+4001 | Msa1464900:intergenic |
GAGCTGTACATTCATCGGAT+TGG | 0.543246 | tig0044731:-1223 | Msa1464900:CDS |
TGTCCATTATCTTACATGCA+AGG | 0.543686 | tig0044731:-728 | Msa1464900:three_prime_UTR |
ATACGAGCACATGCATGCAT+TGG | 0.549970 | tig0044731:-3495 | Msa1464900:five_prime_UTR |
TTGTTTGCTCGACTGAACCC+AGG | 0.550223 | tig0044731:-817 | Msa1464900:three_prime_UTR |
AAGGGCAATGCAGTATATGT+TGG | 0.553284 | tig0044731:-951 | Msa1464900:three_prime_UTR |
TCGTGGACTTGATGTACAGC+AGG | 0.556397 | tig0044731:-2125 | Msa1464900:intron |
ATGGAGCCTATGACCATGAC+AGG | 0.559032 | tig0044731:-3704 | Msa1464900:intron |
ATCATGTCAAGGACTCGGCC+AGG | 0.564010 | tig0044731:+3408 | Msa1464900:intergenic |
CATAGACAGTATACCTGTCA+TGG | 0.565778 | tig0044731:+3691 | Msa1464900:intergenic |
GATAGGTTCTTCTGACCCAA+TGG | 0.565909 | tig0044731:+3783 | Msa1464900:intergenic |
AAAATTAATCTCAGCCGTAT+CGG | 0.568278 | tig0044731:+773 | Msa1464900:intergenic |
ATAAGATCAGCAACATTCAT+CGG | 0.575456 | tig0044731:+978 | Msa1464900:intergenic |
ACGTGATGAATTGACATTGG+AGG | 0.580038 | tig0044731:-2604 | Msa1464900:intron |
TGTTTGCTCGACTGAACCCA+GGG | 0.581642 | tig0044731:-816 | Msa1464900:three_prime_UTR |
ATTATGGATGAATTTCGTGC+TGG | 0.582575 | tig0044731:-2184 | Msa1464900:CDS |
CTACAACAACAATGAAGAGA+GGG | 0.584294 | tig0044731:+4299 | Msa1464900:intergenic |
AGACCGCTTTGGCAACATCA+TGG | 0.586297 | tig0044731:+4036 | Msa1464900:intergenic |
AAAACGTGATGAATTGACAT+TGG | 0.590799 | tig0044731:-2607 | Msa1464900:CDS |
ACACGGAGTTCATGTAGTGT+CGG | 0.591877 | tig0044731:-3436 | Msa1464900:five_prime_UTR |
TTGCCAAAGCGGTCTTATGG+TGG | 0.596063 | tig0044731:-4028 | Msa1464900:five_prime_UTR |
CAAAATTGGATTTGGAGGGA+AGG | 0.598555 | tig0044731:-4457 | None:intergenic |
TTGATGTTGAAAGGGAGGAA+TGG | 0.599804 | tig0044731:-2485 | Msa1464900:CDS |
TATATTCACCAGATGAGTGA+GGG | 0.601227 | tig0044731:+3819 | Msa1464900:intergenic |
ATAAATTTCATAAGTCAAGA+GGG | 0.604623 | tig0044731:-3759 | Msa1464900:five_prime_UTR |
TTCACTATCTCATCAATGCA+CGG | 0.607282 | tig0044731:-2235 | Msa1464900:CDS |
TATTTGAGAATGCCCTGTGA+TGG | 0.609723 | tig0044731:-3880 | Msa1464900:five_prime_UTR |
GTCATCTCCAAAATTTCATG+AGG | 0.612581 | tig0044731:+2666 | Msa1464900:intergenic |
CCACCATGATGTTGCCAAAG+CGG | 0.614786 | tig0044731:-4039 | Msa1464900:five_prime_UTR |
ATTCTGTAACACCAAGCGAA+AGG | 0.615167 | tig0044731:-2406 | Msa1464900:intron |
TGTGTATAGATATCTCCCTC+CGG | 0.617507 | tig0044731:-3212 | Msa1464900:CDS |
TTATATTCACCAGATGAGTG+AGG | 0.627176 | tig0044731:+3818 | Msa1464900:intergenic |
GAATATAACAGCTTGAGTGA+TGG | 0.627409 | tig0044731:+2425 | Msa1464900:intergenic |
GTTCTTCTGACCCAATGGAA+TGG | 0.630104 | tig0044731:+3788 | Msa1464900:intergenic |
TTCGTCCAAAACGTCCAGAA+CGG | 0.636927 | tig0044731:+1200 | Msa1464900:intergenic |
CCATTATCTTACATGCAAGG+TGG | 0.645222 | tig0044731:-725 | Msa1464900:three_prime_UTR |
AGGTGAACCTGAAGATCCGG+AGG | 0.649252 | tig0044731:+3196 | Msa1464900:intergenic |
CAGCCCAACTGACCATCACA+GGG | 0.653439 | tig0044731:+3868 | Msa1464900:intergenic |
ACTACAACAACAATGAAGAG+AGG | 0.661536 | tig0044731:+4298 | Msa1464900:intergenic |
TACAACAACAATGAAGAGAG+GGG | 0.676280 | tig0044731:+4300 | Msa1464900:intergenic |
AAAATGATTAAAGATAGTGA+CGG | 0.682155 | tig0044731:+4326 | Msa1464900:intergenic |
AAAGCGTTGGAGAAGACACA+AGG | 0.685686 | tig0044731:-3467 | Msa1464900:five_prime_UTR |
ACGGAGTTCATGTAGTGTCG+GGG | 0.690010 | tig0044731:-3434 | Msa1464900:five_prime_UTR |
GACACAAGGAAACTTGAACA+CGG | 0.692105 | tig0044731:-3453 | Msa1464900:five_prime_UTR |
TCTGATGAAATGCTGAGCAG+AGG | 0.698342 | tig0044731:-3256 | Msa1464900:CDS |
GGTGAACCTGAAGATCCGGA+GGG | 0.711398 | tig0044731:+3197 | Msa1464900:intergenic |
CCGCTTTGGCAACATCATGG+TGG | 0.713927 | tig0044731:+4039 | Msa1464900:intergenic |
AGTTTATGACAGATCCTGTG+AGG | 0.717164 | tig0044731:-2638 | Msa1464900:CDS |
TGATTTCTGCAAAACCACCG+TGG | 0.765068 | tig0044731:+4069 | Msa1464890:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGTACTTATTTTAAAACA+TGG | - | tig0044731:1214-1233 | Msa1464900:CDS | 15.0% |
!!! | ATATTTTTCTTTTTTATTGC+AGG | - | tig0044731:1853-1872 | Msa1464900:intron | 15.0% |
!!! | TTGTTTAATTTTTAATGTGT+AGG | - | tig0044731:2425-2444 | Msa1464900:CDS | 15.0% |
!! | AAGGTAAATGAAAATTATAA+AGG | - | tig0044731:2750-2769 | Msa1464900:intron | 15.0% |
!!! | TAATATTTGTTTGTTATTAG+AGG | - | tig0044731:3693-3712 | Msa1464900:intron | 15.0% |
!! | TAAGAAATGTAACAATTAAA+TGG | - | tig0044731:3806-3825 | Msa1464900:five_prime_UTR | 15.0% |
!! | AAAATGATTAAAGATAGTGA+CGG | + | tig0044731:814-833 | Msa0119830:intergenic | 20.0% |
!! | GACTTATGAAATTTATTGAT+AGG | + | tig0044731:1374-1393 | Msa1464900:intergenic | 20.0% |
!! | AATAAATTTCATAAGTCAAG+AGG | - | tig0044731:1377-1396 | Msa1464900:intron | 20.0% |
!! | ATAAATTTCATAAGTCAAGA+GGG | - | tig0044731:1378-1397 | Msa1464900:intron | 20.0% |
!! | TCAAATTACAAAATTTCAGT+CGG | + | tig0044731:1533-1552 | Msa1464900:intergenic | 20.0% |
!!! | TGAAATTTTGTAATTTGAAC+AGG | - | tig0044731:1535-1554 | Msa1464900:intron | 20.0% |
!!! | ACAAACTGAAAATGTTATTT+TGG | - | tig0044731:1599-1618 | Msa1464900:intron | 20.0% |
!!! | AAAATGTTATTTTGGCAATT+GGG | - | tig0044731:1607-1626 | Msa1464900:intron | 20.0% |
!! | AATTTGTCTGAATTAGAAAT+TGG | + | tig0044731:2065-2084 | Msa1464900:intergenic | 20.0% |
!! | TTTCTAATTCAGACAAATTT+AGG | - | tig0044731:2066-2085 | Msa1464900:intron | 20.0% |
!! | ACAAATTTAGGTGATAAATA+GGG | - | tig0044731:2078-2097 | Msa1464900:intron | 20.0% |
!!! | AATTTTATGTTGATGTTGAA+AGG | - | tig0044731:2643-2662 | Msa1464900:CDS | 20.0% |
!!! | ATTTTATGTTGATGTTGAAA+GGG | - | tig0044731:2644-2663 | Msa1464900:CDS | 20.0% |
!! | GAAAATTATAAAGGTTCTTT+AGG | - | tig0044731:2759-2778 | Msa1464900:intron | 20.0% |
!!! | CTAGTCTTTATATTTACATA+TGG | - | tig0044731:2813-2832 | Msa1464900:intron | 20.0% |
!! | TTATATTTACATATGGTGAT+TGG | - | tig0044731:2820-2839 | Msa1464900:intron | 20.0% |
!!! | ATTGGTTATATATATCCTTT+TGG | - | tig0044731:2838-2857 | Msa1464900:intron | 20.0% |
!! | TATTATTATTACATACAGCA+AGG | - | tig0044731:3567-3586 | Msa1464900:five_prime_UTR | 20.0% |
!!! | TATTACTTGTTTCTTATAGT+TGG | - | tig0044731:4030-4049 | Msa1464900:five_prime_UTR | 20.0% |
!!! | ATTACTTGTTTCTTATAGTT+GGG | - | tig0044731:4031-4050 | Msa1464900:five_prime_UTR | 20.0% |
!!! | TTGCTATAAATTTTGTGAAA+AGG | - | tig0044731:4076-4095 | Msa1464900:five_prime_UTR | 20.0% |
!!! | TGCTATAAATTTTGTGAAAA+GGG | - | tig0044731:4077-4096 | Msa1464900:five_prime_UTR | 20.0% |
!! | AAAACTAGAGGTAATTTTGT+AGG | + | tig0044731:734-753 | Msa0119830:intergenic | 25.0% |
!!! | GGATTTTAACATAAAACTAG+AGG | + | tig0044731:746-765 | Msa0119830:intergenic | 25.0% |
! | TGTTGTCACAAATAGAAATA+AGG | + | tig0044731:907-926 | Msa1464900:intergenic | 25.0% |
! | AAGCATACAATAAGCTATAT+AGG | + | tig0044731:951-970 | Msa1464900:intergenic | 25.0% |
!! | AATTTTTCTCTGAATGCTAA+TGG | - | tig0044731:1414-1433 | Msa1464900:intron | 25.0% |
!! | AATAACATTTTCAGTTTGTG+AGG | + | tig0044731:1598-1617 | Msa1464900:intergenic | 25.0% |
!!! | GAAAATGTTATTTTGGCAAT+TGG | - | tig0044731:1606-1625 | Msa1464900:intron | 25.0% |
! | GACAAATTTAGGTGATAAAT+AGG | - | tig0044731:2077-2096 | Msa1464900:intron | 25.0% |
! | ATGAATATGTTGTCTTCATT+TGG | - | tig0044731:2228-2247 | Msa1464900:CDS | 25.0% |
! | ACCTCAATTTATAACTTAGT+TGG | - | tig0044731:2288-2307 | Msa1464900:intron | 25.0% |
! | TCCAACTAAGTTATAAATTG+AGG | + | tig0044731:2292-2311 | Msa1464900:intergenic | 25.0% |
! | AGTTAAATATCAGAAAACAC+AGG | + | tig0044731:2578-2597 | Msa1464900:intergenic | 25.0% |
!! | TGTGTTTTCTGATATTTAAC+TGG | - | tig0044731:2577-2596 | Msa1464900:intron | 25.0% |
!!! | TATATATATCCTTTTGGAAC+AGG | - | tig0044731:2844-2863 | Msa1464900:intron | 25.0% |
! | AGTTGTTAGTAGTTTATTCT+TGG | - | tig0044731:3037-3056 | Msa1464900:intron | 25.0% |
! | AAATAAAAAAACACATGGAC+TGG | + | tig0044731:3087-3106 | Msa1464900:intergenic | 25.0% |
!!! | CTGAATTCATCATATTTTAG+AGG | + | tig0044731:3113-3132 | Msa1464900:intergenic | 25.0% |
!!! | ATACTGATTCAAAGTAATCA+TGG | + | tig0044731:3188-3207 | Msa1464900:intergenic | 25.0% |
!! | AATTTTAAACCTACTGCAAA+AGG | + | tig0044731:3265-3284 | Msa1464900:intergenic | 25.0% |
! | TGACTACATTAAAATTGCTT+AGG | + | tig0044731:3399-3418 | Msa1464900:intergenic | 25.0% |
! | TGACTACATTAAAATTGCTT+AGG | + | tig0044731:3399-3418 | Msa1464900:intergenic | 25.0% |
! | CAAGTCAACATCAATATTTA+TGG | + | tig0044731:3627-3646 | Msa1464900:intergenic | 25.0% |
!! | AAAAGATAAAAGCACAAACA+GGG | + | tig0044731:3732-3751 | Msa1464900:intergenic | 25.0% |
!! | TGTTTGTGCTTTTATCTTTT+GGG | - | tig0044731:3732-3751 | Msa1464900:five_prime_UTR | 25.0% |
! | GAAATGTAACAATTAAATGG+AGG | - | tig0044731:3809-3828 | Msa1464900:five_prime_UTR | 25.0% |
! | TGTTGCTGATCTTATATAAA+AGG | - | tig0044731:4167-4186 | Msa1464900:five_prime_UTR | 25.0% |
! | GTTGCTGATCTTATATAAAA+GGG | - | tig0044731:4168-4187 | Msa1464900:five_prime_UTR | 25.0% |
!! | CTGAGATTAATTTTGTAAAC+TGG | - | tig0044731:4373-4392 | Msa1464900:five_prime_UTR | 25.0% |
ATAGGAGATGTTGTCAAAAA+AGG | + | tig0044731:933-952 | Msa1464900:intergenic | 30.0% | |
ATAAATTGTGACCATTCCAT+TGG | - | tig0044731:1338-1357 | Msa1464900:intron | 30.0% | |
TAAATTGTGACCATTCCATT+GGG | - | tig0044731:1339-1358 | Msa1464900:intron | 30.0% | |
! | AGGTATACTGTCTATGATTT+TGG | - | tig0044731:1453-1472 | Msa1464900:intron | 30.0% |
!! | GTCAATTAGTTTGCAATTGT+TGG | + | tig0044731:1495-1514 | Msa1464900:intergenic | 30.0% |
! | TTTCTTTCTTTTTCTCGTCA+AGG | - | tig0044731:1822-1841 | Msa1464900:intron | 30.0% |
ATAAAATGACAGAGAAGGTA+AGG | + | tig0044731:1964-1983 | Msa1464900:intergenic | 30.0% | |
!!! | ACCTTCTCTGTCATTTTATT+TGG | - | tig0044731:1965-1984 | Msa1464900:intron | 30.0% |
TCCAAATAAAATGACAGAGA+AGG | + | tig0044731:1969-1988 | Msa1464900:intergenic | 30.0% | |
!!! | CTCTGTCATTTTATTTGGAA+TGG | - | tig0044731:1970-1989 | Msa1464900:intron | 30.0% |
CTACTTAGCAAAGTTGTAAT+TGG | + | tig0044731:2022-2041 | Msa1464900:intergenic | 30.0% | |
ACTAAAACCAATCATCAAAC+AGG | + | tig0044731:2124-2143 | Msa1464900:intergenic | 30.0% | |
AAAATCTGTATCAGCTATAG+AGG | + | tig0044731:2207-2226 | Msa1464900:intergenic | 30.0% | |
AGGTAAAGTTTCAGATGATT+GGG | + | tig0044731:2272-2291 | Msa1464900:intergenic | 30.0% | |
ACTTAGTTGGATGTATCTTT+AGG | - | tig0044731:2301-2320 | Msa1464900:intron | 30.0% | |
CTTAGTTGGATGTATCTTTA+GGG | - | tig0044731:2302-2321 | Msa1464900:intron | 30.0% | |
! | TTACTCTTGTTGTAAACTTG+TGG | - | tig0044731:2358-2377 | Msa1464900:intron | 30.0% |
ATTCAGAGACTACATAAGTT+TGG | + | tig0044731:2406-2425 | Msa1464900:intergenic | 30.0% | |
! | TCAATTCATCACGTTTTACA+AGG | + | tig0044731:2527-2546 | Msa1464900:intergenic | 30.0% |
AAAACGTGATGAATTGACAT+TGG | - | tig0044731:2530-2549 | Msa1464900:intron | 30.0% | |
! | ATTTTCATTTACCTTTCGCT+TGG | + | tig0044731:2745-2764 | Msa1464900:intergenic | 30.0% |
! | TATAAAGGTTCTTTAGGAAC+AGG | - | tig0044731:2765-2784 | Msa1464900:intron | 30.0% |
AAGAGAAAGAGATGCAATTA+TGG | - | tig0044731:2937-2956 | Msa1464900:intron | 30.0% | |
!! | TATTGATAACGACTGATGTT+TGG | - | tig0044731:2987-3006 | Msa1464900:intron | 30.0% |
!! | ATTGATAACGACTGATGTTT+GGG | - | tig0044731:2988-3007 | Msa1464900:intron | 30.0% |
GGCACAAATAAAAAAACACA+TGG | + | tig0044731:3092-3111 | Msa1464900:intergenic | 30.0% | |
ATCAAATTCCGTGTAAAACT+GGG | + | tig0044731:3293-3312 | Msa1464900:intergenic | 30.0% | |
! | CAAAAGATAAAAGCACAAAC+AGG | + | tig0044731:3733-3752 | Msa1464900:intergenic | 30.0% |
! | CTGTTTGTGCTTTTATCTTT+TGG | - | tig0044731:3731-3750 | Msa1464900:five_prime_UTR | 30.0% |
! | TCTGAAGTAAGTAGTTAGTA+TGG | - | tig0044731:3996-4015 | Msa1464900:five_prime_UTR | 30.0% |
ATAAGATCAGCAACATTCAT+CGG | + | tig0044731:4162-4181 | Msa1464900:intergenic | 30.0% | |
GTGTTTGTCAAATTTATGCT+AGG | - | tig0044731:4216-4235 | Msa1464900:five_prime_UTR | 30.0% | |
GTCAAATTTATGCTAGGAAT+TGG | - | tig0044731:4222-4241 | Msa1464900:five_prime_UTR | 30.0% | |
CTTATGAAACTCTTGACATA+TGG | - | tig0044731:4284-4303 | Msa1464900:five_prime_UTR | 30.0% | |
!!! | GTTTACTTTTTTTGCCGATA+CGG | - | tig0044731:4350-4369 | Msa1464900:five_prime_UTR | 30.0% |
AAAATTAATCTCAGCCGTAT+CGG | + | tig0044731:4367-4386 | Msa1464900:intergenic | 30.0% | |
TACAACAACAATGAAGAGAG+GGG | + | tig0044731:840-859 | Msa0119830:intergenic | 35.0% | |
CTACAACAACAATGAAGAGA+GGG | + | tig0044731:841-860 | Msa0119830:intergenic | 35.0% | |
ACTACAACAACAATGAAGAG+AGG | + | tig0044731:842-861 | Msa0119830:intergenic | 35.0% | |
! | CTCTTCATTGTTGTTGTAGT+TGG | - | tig0044731:842-861 | Msa1464900:three_prime_UTR | 35.0% |
! | AAAGTGCATGTTTTGTACCA+CGG | - | tig0044731:1051-1070 | Msa1464900:CDS | 35.0% |
TATATTCACCAGATGAGTGA+GGG | + | tig0044731:1321-1340 | Msa1464900:intergenic | 35.0% | |
TTATATTCACCAGATGAGTG+AGG | + | tig0044731:1322-1341 | Msa1464900:intergenic | 35.0% | |
TTGTAATTTGAACAGGTTGC+AGG | - | tig0044731:1542-1561 | Msa1464900:intron | 35.0% | |
TTTAATTGTGTCTCCGACAA+GGG | - | tig0044731:1566-1585 | Msa1464900:intron | 35.0% | |
! | TTTTGATCATGTCAAGGACT+CGG | + | tig0044731:1737-1756 | Msa1464900:intergenic | 35.0% |
! | TTCTCCTTTTGATCATGTCA+AGG | + | tig0044731:1743-1762 | Msa1464900:intergenic | 35.0% |
TTTGCTAAGTAGACTTCACA+AGG | - | tig0044731:2030-2049 | Msa1464900:intron | 35.0% | |
GGTGATAAATAGGGTTAAAG+AGG | - | tig0044731:2087-2106 | Msa1464900:intron | 35.0% | |
TAACAACATAATTTCCCCTC+AGG | + | tig0044731:2179-2198 | Msa1464900:intergenic | 35.0% | |
GAGGTAAAGTTTCAGATGAT+TGG | + | tig0044731:2273-2292 | Msa1464900:intergenic | 35.0% | |
! | TACGCTACCTCATGAAATTT+TGG | - | tig0044731:2464-2483 | Msa1464900:CDS | 35.0% |
GTCATCTCCAAAATTTCATG+AGG | + | tig0044731:2474-2493 | Msa1464900:intergenic | 35.0% | |
TTATGTTGATGTTGAAAGGG+AGG | - | tig0044731:2647-2666 | Msa1464900:CDS | 35.0% | |
GAATATAACAGCTTGAGTGA+TGG | + | tig0044731:2715-2734 | Msa1464900:intergenic | 35.0% | |
!!! | ATATATCCTTTTGGAACAGG+TGG | - | tig0044731:2847-2866 | Msa1464900:intron | 35.0% |
TTCACTATCTCATCAATGCA+CGG | - | tig0044731:2902-2921 | Msa1464900:intron | 35.0% | |
ATTGCATCTCTTTCTCTTTG+AGG | + | tig0044731:2935-2954 | Msa1464900:intergenic | 35.0% | |
ATTATGGATGAATTTCGTGC+TGG | - | tig0044731:2953-2972 | Msa1464900:intron | 35.0% | |
!!! | AAAAACTAGCCTTTTGCAGT+AGG | - | tig0044731:3253-3272 | Msa1464900:CDS | 35.0% |
GATCAAATTCCGTGTAAAAC+TGG | + | tig0044731:3294-3313 | Msa1464900:intergenic | 35.0% | |
! | GTCAGCAATTACTGTGTTTT+GGG | + | tig0044731:3528-3547 | Msa1464900:intergenic | 35.0% |
ATATCTTCCTACTTCTGTTC+AGG | + | tig0044731:3550-3569 | Msa1464900:intergenic | 35.0% | |
!! | TGTGCTTTTATCTTTTGGGT+CGG | - | tig0044731:3736-3755 | Msa1464900:five_prime_UTR | 35.0% |
TGATAACAGAAACAAGTGCA+CGG | + | tig0044731:3854-3873 | Msa1464900:intergenic | 35.0% | |
ATGTACAGCTCTCGATTATT+TGG | + | tig0044731:3905-3924 | Msa1464900:intergenic | 35.0% | |
AAAAGTAAACCTTCATCCCT+GGG | + | tig0044731:4340-4359 | Msa1464900:intergenic | 35.0% | |
AAAAAGTAAACCTTCATCCC+TGG | + | tig0044731:4341-4360 | Msa1464900:intergenic | 35.0% | |
TGTCCATTATCTTACATGCA+AGG | - | tig0044731:4409-4428 | Msa1464900:five_prime_UTR | 35.0% | |
GAGACGCACGAGTTAAATAT+TGG | + | tig0044731:767-786 | Msa0119830:intergenic | 40.0% | |
! | TAGTTGGCACTTTGACTTCT+CGG | - | tig0044731:858-877 | Msa1464900:three_prime_UTR | 40.0% |
AGTTCAACATGCCCAAATCA+AGG | + | tig0044731:1139-1158 | Msa1464900:intergenic | 40.0% | |
GATTTGGGCATGTTGAACTA+TGG | - | tig0044731:1140-1159 | Msa1464900:intron | 40.0% | |
TATTTGAGAATGCCCTGTGA+TGG | - | tig0044731:1257-1276 | Msa1464900:CDS | 40.0% | |
AGTATACCTGTCATGGTCAT+AGG | + | tig0044731:1442-1461 | Msa1464900:intergenic | 40.0% | |
CATAGACAGTATACCTGTCA+TGG | + | tig0044731:1449-1468 | Msa1464900:intergenic | 40.0% | |
CTTTAATTGTGTCTCCGACA+AGG | - | tig0044731:1565-1584 | Msa1464900:intron | 40.0% | |
GACACAAGGAAACTTGAACA+CGG | - | tig0044731:1684-1703 | Msa1464900:intron | 40.0% | |
GAGTCCTTGACATGATCAAA+AGG | - | tig0044731:1736-1755 | Msa1464900:intron | 40.0% | |
TGTGTATAGATATCTCCCTC+CGG | - | tig0044731:1925-1944 | Msa1464900:intron | 40.0% | |
! | TGATGTGCCTGTTTGATGAT+TGG | - | tig0044731:2114-2133 | Msa1464900:intron | 40.0% |
CTCATTTCCACTCCTTCATA+TGG | + | tig0044731:2156-2175 | Msa1464900:intergenic | 40.0% | |
AGTTTGGAAAGAATGCAGAC+AGG | + | tig0044731:2390-2409 | Msa1464900:intergenic | 40.0% | |
AGTTTATGACAGATCCTGTG+AGG | - | tig0044731:2499-2518 | Msa1464900:CDS | 40.0% | |
ACGTGATGAATTGACATTGG+AGG | - | tig0044731:2533-2552 | Msa1464900:intron | 40.0% | |
TTGATGTTGAAAGGGAGGAA+TGG | - | tig0044731:2652-2671 | Msa1464900:CDS | 40.0% | |
ATTCTGTAACACCAAGCGAA+AGG | - | tig0044731:2731-2750 | Msa1464900:intron | 40.0% | |
! | ATTTCACGCCCAGTTTTACA+CGG | - | tig0044731:3282-3301 | Msa1464900:intron | 40.0% |
! | AAGCTTTATCCCACTAAGTG+GGG | + | tig0044731:3328-3347 | Msa1464900:intergenic | 40.0% |
! | CAAGCTTTATCCCACTAAGT+GGG | + | tig0044731:3329-3348 | Msa1464900:intergenic | 40.0% |
! | GGTCAGCAATTACTGTGTTT+TGG | + | tig0044731:3529-3548 | Msa1464900:intergenic | 40.0% |
ATGTGCTCAAGCATTCCAAT+TGG | - | tig0044731:3647-3666 | Msa1464900:intron | 40.0% | |
TGTGCTCAAGCATTCCAATT+GGG | - | tig0044731:3648-3667 | Msa1464900:intron | 40.0% | |
!! | GTGCTTTTATCTTTTGGGTC+GGG | - | tig0044731:3737-3756 | Msa1464900:five_prime_UTR | 40.0% |
!! | TGCTTTTATCTTTTGGGTCG+GGG | - | tig0044731:3738-3757 | Msa1464900:five_prime_UTR | 40.0% |
!! | GTGCACTTGTTTCTGTTATC+AGG | - | tig0044731:3853-3872 | Msa1464900:five_prime_UTR | 40.0% |
ATCGAGAGCTGTACATTCAT+CGG | - | tig0044731:3909-3928 | Msa1464900:five_prime_UTR | 40.0% | |
!! | ACGTTTTGGACGAAAGGTAT+TGG | - | tig0044731:3946-3965 | Msa1464900:five_prime_UTR | 40.0% |
!!! | CGTTTTGGACGAAAGGTATT+GGG | - | tig0044731:3947-3966 | Msa1464900:five_prime_UTR | 40.0% |
CTTATAGTTGGGCCTAATCA+TGG | - | tig0044731:4042-4061 | Msa1464900:five_prime_UTR | 40.0% | |
AAGGGCAATGCAGTATATGT+TGG | - | tig0044731:4186-4205 | Msa1464900:five_prime_UTR | 40.0% | |
CCACCTTGCATGTAAGATAA+TGG | + | tig0044731:4415-4434 | Msa1464900:intergenic | 40.0% | |
CCATTATCTTACATGCAAGG+TGG | - | tig0044731:4412-4431 | Msa1464900:five_prime_UTR | 40.0% | |
TGATTTCTGCAAAACCACCG+TGG | + | tig0044731:1071-1090 | Msa1464900:intergenic | 45.0% | |
!! | CGGTGGTTTTGCAGAAATCA+TGG | - | tig0044731:1071-1090 | Msa1464900:intron | 45.0% |
ATGTTGCCAAAGCGGTCTTA+TGG | - | tig0044731:1106-1125 | Msa1464900:intron | 45.0% | |
TATGGTGGCTCACCTTGATT+TGG | - | tig0044731:1124-1143 | Msa1464900:intron | 45.0% | |
ATGGTGGCTCACCTTGATTT+GGG | - | tig0044731:1125-1144 | Msa1464900:intron | 45.0% | |
GTTCTTCTGACCCAATGGAA+TGG | + | tig0044731:1352-1371 | Msa1464900:intergenic | 45.0% | |
GATAGGTTCTTCTGACCCAA+TGG | + | tig0044731:1357-1376 | Msa1464900:intergenic | 45.0% | |
ATACGAGCACATGCATGCAT+TGG | - | tig0044731:1642-1661 | Msa1464900:intron | 45.0% | |
!! | AAAGCGTTGGAGAAGACACA+AGG | - | tig0044731:1670-1689 | Msa1464900:intron | 45.0% |
ACACGGAGTTCATGTAGTGT+CGG | - | tig0044731:1701-1720 | Msa1464900:intron | 45.0% | |
! | AGCTATCAAGTTGCTTGTGC+TGG | - | tig0044731:1776-1795 | Msa1464900:intron | 45.0% |
TCTGATGAAATGCTGAGCAG+AGG | - | tig0044731:1881-1900 | Msa1464900:intron | 45.0% | |
GTAAGGTGAACCTGAAGATC+CGG | + | tig0044731:1947-1966 | Msa1464900:intergenic | 45.0% | |
AGTGACCTGACACCATATGA+AGG | - | tig0044731:2141-2160 | Msa1464900:CDS | 45.0% | |
! | CGTTTTACAAGGATCCTCAC+AGG | + | tig0044731:2516-2535 | Msa1464900:intergenic | 45.0% |
ATTACCCGCCTCATGATTAC+AGG | - | tig0044731:2611-2630 | Msa1464900:CDS | 45.0% | |
TTACCCGCCTCATGATTACA+GGG | - | tig0044731:2612-2631 | Msa1464900:CDS | 45.0% | |
GGTCACTGGTCAAACAAGTT+AGG | + | tig0044731:3066-3085 | Msa1464900:intergenic | 45.0% | |
!! | AAAACACATGGACTGGTCAC+TGG | + | tig0044731:3080-3099 | Msa1464900:intergenic | 45.0% |
TTTATCCCACTAAGTGGGGT+CGG | + | tig0044731:3324-3343 | Msa1464900:intergenic | 45.0% | |
! | CCAAGCTTTATCCCACTAAG+TGG | + | tig0044731:3330-3349 | Msa1464900:intergenic | 45.0% |
CCACTTAGTGGGATAAAGCT+TGG | - | tig0044731:3327-3346 | Msa1464900:intron | 45.0% | |
GTGGGATAAAGCTTGGTTGT+TGG | - | tig0044731:3334-3353 | Msa1464900:intron | 45.0% | |
TTGCTGACCTGAACAGAAGT+AGG | - | tig0044731:3540-3559 | Msa1464900:five_prime_UTR | 45.0% | |
GAGCTGTACATTCATCGGAT+TGG | - | tig0044731:3914-3933 | Msa1464900:five_prime_UTR | 45.0% | |
TTCGTCCAAAACGTCCAGAA+CGG | + | tig0044731:3940-3959 | Msa1464900:intergenic | 45.0% | |
!! | TTCTGGACGTTTTGGACGAA+AGG | - | tig0044731:3940-3959 | Msa1464900:five_prime_UTR | 45.0% |
ACACCCTGCAAACCATGATT+AGG | + | tig0044731:4057-4076 | Msa1464900:intergenic | 45.0% | |
! | GTGCATGTTTTGTACCACGG+TGG | - | tig0044731:1054-1073 | Msa1464900:CDS | 50.0% |
CCACCATGATGTTGCCAAAG+CGG | - | tig0044731:1098-1117 | Msa1464900:intron | 50.0% | |
AGACCGCTTTGGCAACATCA+TGG | + | tig0044731:1104-1123 | Msa1464900:intergenic | 50.0% | |
! | TTGCCAAAGCGGTCTTATGG+TGG | - | tig0044731:1109-1128 | Msa1464900:intron | 50.0% |
AATGCCCTGTGATGGTCAGT+TGG | - | tig0044731:1265-1284 | Msa1464900:CDS | 50.0% | |
ATGCCCTGTGATGGTCAGTT+GGG | - | tig0044731:1266-1285 | Msa1464900:intron | 50.0% | |
! | GGTCAGTTGGGCTGTTCTTT+TGG | - | tig0044731:1278-1297 | Msa1464900:intron | 50.0% |
!!! | CTTTTGGTTAGCCTGCTCAG+AGG | - | tig0044731:1294-1313 | Msa1464900:intron | 50.0% |
ATGGAGCCTATGACCATGAC+AGG | - | tig0044731:1433-1452 | Msa1464900:intron | 50.0% | |
TGTGTCTCCGACAAGGGAAT+TGG | - | tig0044731:1572-1591 | Msa1464900:intron | 50.0% | |
TGTGAGGCCAATTCCCTTGT+CGG | + | tig0044731:1582-1601 | Msa1464900:intergenic | 50.0% | |
! | TGCATTGGAGGCAAAAGCGT+TGG | - | tig0044731:1657-1676 | Msa1464900:intron | 50.0% |
CACGGAGTTCATGTAGTGTC+GGG | - | tig0044731:1702-1721 | Msa1464900:intron | 50.0% | |
ACGGAGTTCATGTAGTGTCG+GGG | - | tig0044731:1703-1722 | Msa1464900:intron | 50.0% | |
ATATCTCCCTCCGGATCTTC+AGG | - | tig0044731:1934-1953 | Msa1464900:intron | 50.0% | |
CCACTCCTTCATATGGTGTC+AGG | + | tig0044731:2149-2168 | Msa1464900:intergenic | 50.0% | |
CCTGACACCATATGAAGGAG+TGG | - | tig0044731:2146-2165 | Msa1464900:CDS | 50.0% | |
AAGGAGTGGAAATGAGCCTG+AGG | - | tig0044731:2160-2179 | Msa1464900:CDS | 50.0% | |
AGGAGTGGAAATGAGCCTGA+GGG | - | tig0044731:2161-2180 | Msa1464900:CDS | 50.0% | |
!! | GGATGTATCTTTAGGGTCCG+TGG | - | tig0044731:2309-2328 | Msa1464900:intron | 50.0% |
CGCACATCACTCCAGTAACT+GGG | + | tig0044731:2336-2355 | Msa1464900:intergenic | 50.0% | |
ACGCACATCACTCCAGTAAC+TGG | + | tig0044731:2337-2356 | Msa1464900:intergenic | 50.0% | |
ATGCCCTGTAATCATGAGGC+GGG | + | tig0044731:2618-2637 | Msa1464900:intergenic | 50.0% | |
GATGCCCTGTAATCATGAGG+CGG | + | tig0044731:2619-2638 | Msa1464900:intergenic | 50.0% | |
CCTGATGCCCTGTAATCATG+AGG | + | tig0044731:2622-2641 | Msa1464900:intergenic | 50.0% | |
! | CCTCATGATTACAGGGCATC+AGG | - | tig0044731:2619-2638 | Msa1464900:CDS | 50.0% |
!!! | TCCTTTTGGAACAGGTGGAC+TGG | - | tig0044731:2852-2871 | Msa1464900:intron | 50.0% |
ACCAGTCCACCTGTTCCAAA+AGG | + | tig0044731:2856-2875 | Msa1464900:intergenic | 50.0% | |
TCGTGGACTTGATGTACAGC+AGG | - | tig0044731:3012-3031 | Msa1464900:intron | 50.0% | |
ACTAAGTGGGGTCGGTTACA+TGG | + | tig0044731:3316-3335 | Msa1464900:intergenic | 50.0% | |
ATGTAACCGACCCCACTTAG+TGG | - | tig0044731:3315-3334 | Msa1464900:intron | 50.0% | |
TGTAACCGACCCCACTTAGT+GGG | - | tig0044731:3316-3335 | Msa1464900:intron | 50.0% | |
AGCACAAGTGCATGCCCAAT+TGG | + | tig0044731:3665-3684 | Msa1464900:intergenic | 50.0% | |
!! | TATCTTTTGGGTCGGGGTGA+AGG | - | tig0044731:3744-3763 | Msa1464900:five_prime_UTR | 50.0% |
!! | ATTCATCGGATTGGCCGTTC+TGG | - | tig0044731:3923-3942 | Msa1464900:five_prime_UTR | 50.0% |
!! | ATTGGCCGTTCTGGACGTTT+TGG | - | tig0044731:3932-3951 | Msa1464900:five_prime_UTR | 50.0% |
! | TGGGCCTAATCATGGTTTGC+AGG | - | tig0044731:4050-4069 | Msa1464900:five_prime_UTR | 50.0% |
! | GGGCCTAATCATGGTTTGCA+GGG | - | tig0044731:4051-4070 | Msa1464900:five_prime_UTR | 50.0% |
TTGTTTGCTCGACTGAACCC+AGG | - | tig0044731:4320-4339 | Msa1464900:five_prime_UTR | 50.0% | |
TGTTTGCTCGACTGAACCCA+GGG | - | tig0044731:4321-4340 | Msa1464900:five_prime_UTR | 50.0% | |
CCGCTTTGGCAACATCATGG+TGG | + | tig0044731:1101-1120 | Msa1464900:intergenic | 55.0% | |
GAGCCACCATAAGACCGCTT+TGG | + | tig0044731:1115-1134 | Msa1464900:intergenic | 55.0% | |
CAGCCCAACTGACCATCACA+GGG | + | tig0044731:1272-1291 | Msa1464900:intergenic | 55.0% | |
ACAGCCCAACTGACCATCAC+AGG | + | tig0044731:1273-1292 | Msa1464900:intergenic | 55.0% | |
TCAGAGGTCCCTCACTCATC+TGG | - | tig0044731:1310-1329 | Msa1464900:intron | 55.0% | |
CGAGCACATGCATGCATTGG+AGG | - | tig0044731:1645-1664 | Msa1464900:intron | 55.0% | |
ATCATGTCAAGGACTCGGCC+AGG | + | tig0044731:1732-1751 | Msa1464900:intergenic | 55.0% | |
GGTGAACCTGAAGATCCGGA+GGG | + | tig0044731:1943-1962 | Msa1464900:intergenic | 55.0% | |
AGGTGAACCTGAAGATCCGG+AGG | + | tig0044731:1944-1963 | Msa1464900:intergenic | 55.0% | |
GGAGTGGAAATGAGCCTGAG+GGG | - | tig0044731:2162-2181 | Msa1464900:CDS | 55.0% | |
CACTCCAGTAACTGGGACCA+CGG | + | tig0044731:2329-2348 | Msa1464900:intergenic | 55.0% | |
ACGACTGATGTTTGGGCTCG+TGG | - | tig0044731:2995-3014 | Msa1464900:intron | 55.0% | |
TCGACTGAACCCAGGGATGA+AGG | - | tig0044731:4328-4347 | Msa1464900:five_prime_UTR | 55.0% | |
TGAGTGAGGGACCTCTGAGC+AGG | + | tig0044731:1308-1327 | Msa1464900:intergenic | 60.0% | |
! | CATGTAGTGTCGGGGACTCC+TGG | - | tig0044731:1711-1730 | Msa1464900:intron | 60.0% |
GGGTCCGTGGTCCCAGTTAC+TGG | - | tig0044731:2322-2341 | Msa1464900:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0044731 | gene | 686 | 4473 | 686 | ID=Msa1464900;Name=Msa1464900 |
tig0044731 | mRNA | 686 | 4473 | 686 | ID=Msa1464900-mRNA-1;Parent=Msa1464900;Name=Msa1464900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=959|1|1|1|1|1|8|288|242 |
tig0044731 | exon | 686 | 1087 | 686 | ID=Msa1464900-mRNA-1:exon:24628;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 1198 | 1284 | 1198 | ID=Msa1464900-mRNA-1:exon:24627;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 2126 | 2293 | 2126 | ID=Msa1464900-mRNA-1:exon:24626;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 2407 | 2526 | 2407 | ID=Msa1464900-mRNA-1:exon:24625;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 2605 | 2712 | 2605 | ID=Msa1464900-mRNA-1:exon:24624;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 3204 | 3284 | 3204 | ID=Msa1464900-mRNA-1:exon:24623;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 3362 | 3602 | 3362 | ID=Msa1464900-mRNA-1:exon:24622;Parent=Msa1464900-mRNA-1 |
tig0044731 | exon | 3705 | 4473 | 3705 | ID=Msa1464900-mRNA-1:exon:24621;Parent=Msa1464900-mRNA-1 |
tig0044731 | five_prime_UTR | 3705 | 4473 | 3705 | ID=Msa1464900-mRNA-1:five_prime_utr;Parent=Msa1464900-mRNA-1 |
tig0044731 | five_prime_UTR | 3413 | 3602 | 3413 | ID=Msa1464900-mRNA-1:five_prime_utr;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 3362 | 3412 | 3362 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 3204 | 3284 | 3204 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 2605 | 2712 | 2605 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 2407 | 2526 | 2407 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 2126 | 2293 | 2126 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 1198 | 1284 | 1198 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | CDS | 974 | 1087 | 974 | ID=Msa1464900-mRNA-1:cds;Parent=Msa1464900-mRNA-1 |
tig0044731 | three_prime_UTR | 686 | 973 | 686 | ID=Msa1464900-mRNA-1:three_prime_utr;Parent=Msa1464900-mRNA-1 |
Gene Sequence |
Protein sequence |