AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170120 MtrunA17_Chr2g0297261 80.751 426 37 2 8 430 23 406 0.0 690
Msa1170120 MtrunA17_Chr2g0299681 56.627 415 135 3 19 430 41 413 6.09e-168 477
Msa1170120 MtrunA17_Chr2g0329931 55.769 416 139 3 18 430 40 413 1.21e-167 477
Msa1170120 MtrunA17_Chr4g0070981 56.145 415 137 3 19 430 41 413 3.61e-166 473
Msa1170120 MtrunA17_Chr8g0342861 55.422 415 140 3 19 430 41 413 7.76e-166 472
Msa1170120 MtrunA17_Chr1g0169331 38.799 433 183 7 37 430 9 398 1.95e-95 292
Msa1170120 MtrunA17_Chr8g0342851 38.961 385 160 5 51 430 5 319 2.99e-81 253
Msa1170120 MtrunA17_Chr7g0247221 34.644 407 219 5 20 423 144 506 3.67e-78 251
Msa1170120 MtrunA17_Chr7g0247191 35.135 407 217 5 20 423 151 513 4.47e-78 251
Msa1170120 MtrunA17_Chr7g0247181 34.644 407 219 5 20 423 141 503 4.84e-78 251
Msa1170120 MtrunA17_Chr2g0330401 32.080 399 230 7 17 411 94 455 9.66e-65 216
Msa1170120 MtrunA17_Chr5g0442191 29.604 429 254 10 8 428 68 456 3.77e-60 206
Msa1170120 MtrunA17_Chr4g0003441 32.235 425 235 11 12 426 99 480 8.15e-60 202
Msa1170120 MtrunA17_Chr3g0107851 31.144 411 230 9 17 413 115 486 4.09e-58 199
Msa1170120 MtrunA17_Chr4g0076491 28.806 427 249 7 7 413 275 666 3.74e-57 199
Msa1170120 MtrunA17_Chr7g0270131 29.318 440 251 9 1 424 217 612 6.60e-57 200
Msa1170120 MtrunA17_Chr6g0449741 28.571 427 248 8 7 413 237 626 1.17e-55 195
Msa1170120 MtrunA17_Chr3g0095031 30.788 419 242 10 13 423 82 460 3.02e-55 192
Msa1170120 MtrunA17_Chr3g0121351 30.986 426 234 11 9 412 133 520 4.82e-55 192
Msa1170120 MtrunA17_Chr1g0149251 35.505 307 189 7 128 426 31 336 6.29e-54 183
Msa1170120 MtrunA17_Chr2g0293631 31.658 398 228 7 19 411 496 854 1.07e-53 193
Msa1170120 MtrunA17_Chr6g0449911 30.370 405 228 10 17 411 163 523 2.70e-53 189
Msa1170120 MtrunA17_Chr7g0271121 34.483 377 198 13 46 413 132 468 5.72e-53 189
Msa1170120 MtrunA17_Chr1g0193491 31.854 383 216 9 22 397 117 461 1.41e-52 186
Msa1170120 MtrunA17_Chr4g0063551 31.358 405 236 8 20 411 141 516 3.28e-52 186
Msa1170120 MtrunA17_Chr6g0483491 27.603 413 254 5 17 425 8 379 1.15e-51 179
Msa1170120 MtrunA17_Chr7g0236841 27.603 413 254 5 17 425 8 379 1.38e-51 179
Msa1170120 MtrunA17_Chr1g0176041 28.780 410 243 9 17 411 152 527 1.30e-49 177
Msa1170120 MtrunA17_Chr1g0179761 30.184 434 226 14 19 419 80 469 2.72e-49 174
Msa1170120 MtrunA17_Chr2g0277821 30.467 407 228 9 17 411 502 865 1.72e-48 177
Msa1170120 MtrunA17_Chr1g0200181 29.219 397 234 6 17 403 143 502 5.05e-48 173
Msa1170120 MtrunA17_Chr1g0157691 28.404 426 257 9 16 430 144 532 2.23e-47 171
Msa1170120 MtrunA17_Chr5g0409981 29.744 390 231 8 17 399 102 455 1.42e-45 165
Msa1170120 MtrunA17_Chr4g0040761 28.087 413 248 8 18 423 18 388 1.62e-45 168
Msa1170120 MtrunA17_Chr2g0310581 27.295 414 249 6 15 419 49 419 3.08e-44 161
Msa1170120 MtrunA17_Chr7g0263771 28.941 425 247 9 15 429 125 504 1.01e-43 161
Msa1170120 MtrunA17_Chr3g0098121 28.744 414 243 9 8 411 140 511 1.09e-42 160
Msa1170120 MtrunA17_Chr6g0461751 27.053 414 245 9 12 411 131 501 1.52e-42 157
Msa1170120 MtrunA17_Chr4g0058591 29.429 350 207 5 16 363 199 510 1.84e-42 156
Msa1170120 MtrunA17_Chr8g0347161 28.037 428 240 15 20 427 103 482 1.39e-38 146
Msa1170120 MtrunA17_Chr2g0309551 24.889 450 266 8 16 419 106 529 2.74e-37 142
Msa1170120 MtrunA17_Chr2g0300291 27.470 415 248 9 8 411 129 501 4.25e-37 144
Msa1170120 MtrunA17_Chr6g0466611 26.024 415 254 9 16 413 139 517 9.50e-37 142
Msa1170120 MtrunA17_Chr8g0347171 27.442 430 244 13 20 429 161 542 1.35e-36 141
Msa1170120 MtrunA17_Chr4g0062301 27.708 397 230 12 31 413 109 462 9.10e-36 139
Msa1170120 MtrunA17_Chr3g0114081 30.945 307 185 8 119 400 80 384 1.05e-35 139
Msa1170120 MtrunA17_Chr2g0307471 26.341 410 246 11 13 409 85 451 2.20e-35 137
Msa1170120 MtrunA17_Chr8g0347151 25.467 428 245 12 20 424 202 578 3.29e-35 137
Msa1170120 MtrunA17_Chr1g0204391 27.865 384 249 6 22 397 47 410 3.38e-35 137
Msa1170120 MtrunA17_Chr7g0236831 24.601 439 252 11 19 400 163 579 1.88e-34 136
Msa1170120 MtrunA17_Chr8g0386451 25.349 430 243 13 20 424 289 665 2.46e-34 135
Msa1170120 MtrunA17_Chr6g0475251 29.426 401 216 14 15 397 102 453 1.48e-33 133
Msa1170120 MtrunA17_Chr5g0443991 28.493 365 212 8 46 400 102 427 1.30e-31 127
Msa1170120 MtrunA17_Chr4g0034411 27.321 377 224 9 46 412 102 438 6.40e-31 125
Msa1170120 MtrunA17_Chr4g0025141 33.824 204 117 5 234 419 14 217 2.28e-30 117
Msa1170120 MtrunA17_Chr3g0137901 38.415 164 96 3 267 426 10 172 1.09e-29 114
Msa1170120 MtrunA17_Chr4g0029191 23.790 496 260 17 10 424 30 488 5.79e-27 113
Msa1170120 MtrunA17_Chr3g0145781 24.350 423 260 11 16 411 129 518 6.56e-24 103
Msa1170120 MtrunA17_Chr4g0062321 28.436 211 146 4 163 369 25 234 1.67e-20 90.5
Msa1170120 MtrunA17_Chr4g0025101 30.172 232 93 9 218 422 7 196 2.42e-18 83.6
Msa1170120 MtrunA17_Chr4g0004301 24.167 360 186 8 129 411 102 451 3.02e-17 84.0
Msa1170120 MtrunA17_Chr5g0429221 20.782 409 265 9 17 414 1 361 3.56e-17 83.2
Msa1170120 MtrunA17_Chr2g0301281 34.343 99 61 2 329 424 388 485 1.75e-14 75.5
Msa1170120 MtrunA17_Chr5g0402301 26.316 190 105 5 274 430 26 213 4.40e-13 68.2
Msa1170120 MtrunA17_Chr3g0137891 31.579 133 88 3 128 257 31 163 1.38e-12 67.0
Msa1170120 MtrunA17_Chr1g0155201 25.200 250 163 9 172 414 5 237 2.76e-12 67.8
Msa1170120 MtrunA17_Chr8g0377041 30.000 100 67 1 296 392 489 588 5.32e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170120 AT3G19760.1 74.413 426 64 3 8 430 25 408 0.0 645
Msa1170120 AT1G51380.1 64.554 426 103 5 8 430 12 392 0.0 560
Msa1170120 AT3G13920.1 57.212 416 133 3 18 430 39 412 1.70e-170 484
Msa1170120 AT3G13920.3 57.212 416 133 3 18 430 29 402 1.81e-170 484
Msa1170120 AT1G54270.1 56.010 416 138 3 18 430 39 412 1.53e-166 474
Msa1170120 AT3G13920.4 56.250 416 132 4 18 430 39 407 1.52e-164 469
Msa1170120 AT1G72730.1 55.422 415 140 3 19 430 42 414 5.23e-164 468
Msa1170120 AT1G54270.2 55.048 416 137 4 18 430 39 407 1.36e-160 459
Msa1170120 AT3G13920.2 57.868 394 121 3 18 408 39 390 1.38e-160 459
Msa1170120 AT3G13920.5 57.868 394 121 3 18 408 43 394 1.89e-160 459
Msa1170120 AT1G51380.2 64.262 305 67 3 8 312 12 274 3.28e-138 397
Msa1170120 AT1G51380.4 62.500 264 57 3 8 271 12 233 1.36e-109 325
Msa1170120 AT1G51380.3 62.500 264 57 3 8 271 12 233 1.66e-109 325
Msa1170120 AT4G00660.1 34.541 414 224 5 20 430 133 502 9.51e-80 255
Msa1170120 AT4G00660.2 34.541 414 224 5 20 430 133 502 9.51e-80 255
Msa1170120 AT3G61240.2 33.333 414 229 5 20 430 126 495 5.34e-76 245
Msa1170120 AT3G61240.1 33.333 414 229 5 20 430 126 495 5.34e-76 245
Msa1170120 AT2G45810.1 33.661 407 223 6 20 423 156 518 6.73e-74 241
Msa1170120 AT1G55150.1 34.278 388 212 8 17 399 98 447 7.85e-66 219
Msa1170120 AT1G55150.2 34.278 388 212 8 17 399 123 472 1.34e-65 219
Msa1170120 AT5G11170.1 32.471 425 234 10 12 426 38 419 3.20e-62 207
Msa1170120 AT5G11200.1 32.471 425 234 10 12 426 38 419 3.20e-62 207
Msa1170120 AT5G63120.2 33.167 401 223 8 17 411 164 525 5.90e-62 211
Msa1170120 AT3G01540.4 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa1170120 AT3G01540.2 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa1170120 AT3G01540.3 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa1170120 AT3G01540.1 33.014 418 229 8 17 422 157 535 7.39e-60 206
Msa1170120 AT5G14610.6 32.057 418 233 8 17 422 160 538 8.89e-60 206
Msa1170120 AT5G14610.2 32.057 418 233 8 17 422 160 538 9.81e-60 206
Msa1170120 AT5G14610.5 32.057 418 233 8 17 422 168 546 1.38e-59 206
Msa1170120 AT3G53110.1 30.751 426 229 12 20 422 93 475 4.56e-58 198
Msa1170120 AT3G06480.1 33.493 418 227 9 19 424 436 814 1.17e-57 204
Msa1170120 AT2G33730.1 28.806 427 249 7 7 413 302 693 2.19e-57 201
Msa1170120 AT3G22330.1 29.512 410 245 7 19 423 105 475 3.74e-57 198
Msa1170120 AT3G22310.2 29.238 407 242 7 23 423 121 487 7.02e-57 197
Msa1170120 AT3G22310.1 29.238 407 242 7 23 423 121 487 9.02e-57 197
Msa1170120 AT5G14610.7 31.841 402 223 8 33 422 45 407 1.02e-55 192
Msa1170120 AT5G14610.3 31.841 402 223 8 33 422 45 407 1.02e-55 192
Msa1170120 AT5G14610.1 31.931 404 224 8 31 422 242 606 1.49e-54 193
Msa1170120 AT2G47330.1 28.910 422 250 7 17 429 227 607 2.31e-54 193
Msa1170120 AT5G11200.3 29.614 466 234 11 12 426 38 460 6.09e-54 187
Msa1170120 AT5G26742.1 31.667 420 242 11 19 430 103 485 1.08e-53 191
Msa1170120 AT5G26742.2 31.667 420 242 11 19 430 103 485 1.09e-53 191
Msa1170120 AT5G11170.2 31.746 378 207 9 57 426 2 336 2.60e-53 182
Msa1170120 AT5G26742.3 33.588 393 215 12 47 430 37 392 2.87e-53 189
Msa1170120 AT2G42520.2 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa1170120 AT2G42520.1 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa1170120 AT2G42520.3 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa1170120 AT5G60990.1 28.954 411 257 7 17 423 8 387 7.35e-52 181
Msa1170120 AT3G58510.1 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa1170120 AT3G58510.3 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa1170120 AT3G58510.2 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa1170120 AT1G20920.2 29.412 425 245 8 17 429 190 571 1.04e-50 183
Msa1170120 AT1G20920.4 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT1G20920.6 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT1G20920.3 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT1G20920.7 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT1G20920.5 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT1G20920.1 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa1170120 AT3G58570.1 29.268 410 245 9 17 413 145 522 5.64e-49 177
Msa1170120 AT3G09720.2 31.566 396 220 6 22 411 145 495 9.56e-49 174
Msa1170120 AT3G09720.1 31.566 396 220 6 22 411 145 495 9.56e-49 174
Msa1170120 AT4G33370.1 29.647 425 249 9 17 429 96 482 2.49e-48 173
Msa1170120 AT1G28180.1 30.645 372 214 9 48 413 2 335 1.29e-47 167
Msa1170120 AT1G77030.1 26.829 410 253 7 20 423 30 398 1.96e-47 174
Msa1170120 AT5G51280.1 29.471 397 233 6 17 403 145 504 3.02e-47 171
Msa1170120 AT1G16280.1 28.469 418 235 11 11 413 51 419 9.49e-46 165
Msa1170120 AT5G14610.4 30.769 351 202 6 17 365 168 479 1.06e-45 165
Msa1170120 AT3G02065.3 27.861 402 246 10 17 411 109 473 2.47e-44 162
Msa1170120 AT3G02065.2 27.861 402 246 10 17 411 109 473 2.47e-44 162
Msa1170120 AT5G63120.1 30.398 352 203 7 15 363 162 474 5.14e-44 160
Msa1170120 AT5G63120.3 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa1170120 AT5G63120.4 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa1170120 AT5G63120.5 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa1170120 AT1G31970.1 29.104 402 238 10 10 399 103 469 8.43e-44 160
Msa1170120 AT1G12770.2 26.813 455 252 11 16 420 108 531 2.04e-43 160
Msa1170120 AT1G12770.1 26.813 455 252 11 16 420 108 531 2.04e-43 160
Msa1170120 AT3G06480.2 32.092 349 196 7 19 365 436 745 1.14e-42 160
Msa1170120 AT3G02065.1 31.597 288 187 6 131 411 52 336 2.26e-41 150
Msa1170120 AT3G09620.2 28.199 422 219 10 17 426 396 745 3.97e-41 156
Msa1170120 AT3G09620.1 28.199 422 219 10 17 426 395 744 4.27e-41 156
Msa1170120 AT5G08620.1 26.856 458 245 14 3 429 65 463 3.13e-40 151
Msa1170120 AT4G16630.1 28.954 411 246 8 8 411 156 527 4.55e-40 153
Msa1170120 AT3G18600.1 27.833 406 245 10 12 409 83 448 1.28e-39 150
Msa1170120 AT5G63630.1 26.437 435 242 13 20 429 56 437 1.43e-39 149
Msa1170120 AT5G08610.1 27.586 435 237 13 20 429 384 765 1.75e-39 151
Msa1170120 AT5G63630.2 26.437 435 242 13 20 429 250 631 4.07e-38 147
Msa1170120 AT5G65900.1 26.728 434 254 10 18 430 154 544 2.02e-37 144
Msa1170120 AT1G63250.1 27.335 439 246 13 9 424 319 707 1.46e-36 142
Msa1170120 AT5G05450.1 27.157 394 229 9 28 400 26 382 1.74e-36 141
Msa1170120 AT2G07750.1 26.682 446 240 13 9 424 366 754 1.69e-35 139
Msa1170120 AT1G71370.1 27.621 391 234 10 22 400 20 373 2.03e-35 138
Msa1170120 AT5G62190.1 28.429 401 224 9 15 399 96 449 2.10e-35 139
Msa1170120 AT5G11200.2 27.876 452 278 15 12 426 38 478 5.12e-35 135
Msa1170120 AT5G54910.1 25.980 408 251 9 16 413 69 435 4.01e-34 135
Msa1170120 AT4G09730.1 24.113 423 260 10 12 413 106 488 3.83e-32 129
Msa1170120 AT2G40700.1 23.958 480 251 15 13 414 25 468 2.03e-28 118
Msa1170120 AT4G34910.1 23.894 452 254 12 16 416 44 456 1.27e-26 112
Msa1170120 AT3G06980.1 24.471 425 262 11 13 411 369 760 7.95e-26 110
Msa1170120 AT3G16840.1 25.121 207 129 5 29 231 201 385 5.62e-16 80.9
Msa1170120 AT3G16840.1 26.667 135 91 2 292 418 490 624 2.12e-11 66.6
Msa1170120 AT3G16840.2 25.121 207 129 5 29 231 202 386 5.72e-16 80.9
Msa1170120 AT3G16840.2 26.667 135 91 2 292 418 491 625 2.12e-11 66.6
Msa1170120 AT1G27880.2 29.412 119 81 1 296 411 483 601 2.32e-12 69.7
Msa1170120 AT1G27880.1 29.412 119 81 1 296 411 483 601 3.16e-12 69.3
Msa1170120 AT4G37020.1 21.762 193 112 5 275 430 22 212 6.97e-11 62.0

Find 96 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACTGAAAATGTTATTT+TGG 0.151334 7_4:+63238382 Msa1170120:CDS
TGTTGCTGATCTTATATAAA+AGG 0.182863 7_4:+63240950 Msa1170120:exon
ATGTACAGCTCTCGATTATT+TGG 0.242192 7_4:-63240685 None:intergenic
TACGCTACCTCATGAAATTT+TGG 0.254057 7_4:+63239247 Msa1170120:CDS
TGCCGTTCTACCTATCATTC+AGG 0.291705 7_4:+63234270 Msa1170120:CDS
AAGAGAAAGAGATGCAATTA+TGG 0.315960 7_4:+63239720 Msa1170120:CDS
GTCAAATTTATGCTAGGAAT+TGG 0.320658 7_4:+63241005 Msa1170120:three_prime_UTR
ATTGGCCGTTCTGGACGTTT+TGG 0.323765 7_4:+63240715 Msa1170120:CDS
TATTGATAACGACTGATGTT+TGG 0.325693 7_4:+63239770 Msa1170120:CDS
ATATCTCCCTCCGGATCTTC+AGG 0.332541 7_4:+63238717 Msa1170120:CDS
GACTTATGAAATTTATTGAT+AGG 0.338371 7_4:-63238155 None:intergenic
TTGTAATTTGAACAGGTTGC+AGG 0.352767 7_4:+63238325 Msa1170120:intron
CCACCTTGCATGTAAGATAA+TGG 0.364408 7_4:-63241195 None:intergenic
ATTCATCGGATTGGCCGTTC+TGG 0.374179 7_4:+63240706 Msa1170120:CDS
ATTGCATCTCTTTCTCTTTG+AGG 0.376417 7_4:-63239715 None:intergenic
GATTGCTCTCACTGTTTGCC+AGG 0.377469 7_4:+63234342 Msa1170120:CDS
ATTGATAACGACTGATGTTT+GGG 0.390146 7_4:+63239771 Msa1170120:CDS
TGTGTCTCCGACAAGGGAAT+TGG 0.408057 7_4:+63238355 Msa1170120:CDS
CTTATGAAACTCTTGACATA+TGG 0.410214 7_4:+63241067 Msa1170120:three_prime_UTR
TCAGAGGTCCCTCACTCATC+TGG 0.412635 7_4:+63238094 Msa1170120:CDS
AGTATACCTGTCATGGTCAT+AGG 0.424071 7_4:-63238222 None:intergenic
AGCAATCATGGAGGACTTGC+CGG 0.434474 7_4:-63234326 None:intergenic
ACGTCACGACCCTGAATGAT+AGG 0.436959 7_4:-63234280 None:intergenic
CATGTAGTGTCGGGGACTCC+TGG 0.441130 7_4:+63238494 Msa1170120:CDS
TGTGAGGCCAATTCCCTTGT+CGG 0.444766 7_4:-63238362 None:intergenic
AAGGTTTCTCAAAACCGTAT+TGG 0.451081 7_4:-63234231 None:intergenic
GTCATCGCTCAGTCTCAATC+TGG 0.453284 7_4:+63234301 Msa1170120:CDS
CCTCATGATTACAGGGCATC+AGG 0.461625 7_4:+63239402 Msa1170120:intron
CTGCGTGGAATTTACCAATA+CGG 0.462856 7_4:+63234217 Msa1170120:CDS
AATAAATTTCATAAGTCAAG+AGG 0.463570 7_4:+63238161 Msa1170120:CDS
CACGGAGTTCATGTAGTGTC+GGG 0.464753 7_4:+63238485 Msa1170120:CDS
GCAAACAGTGAGAGCAATCA+TGG 0.475280 7_4:-63234338 None:intergenic
ACGACTGATGTTTGGGCTCG+TGG 0.476458 7_4:+63239778 Msa1170120:CDS
CGAGCACATGCATGCATTGG+AGG 0.480977 7_4:+63238428 Msa1170120:CDS
GCTCAGTCTCAATCTGGAAC+CGG 0.482872 7_4:+63234307 Msa1170120:CDS
GTTGCTGATCTTATATAAAA+GGG 0.485003 7_4:+63240951 Msa1170120:exon
TAGAACGGCACGCTGTTGAA+TGG 0.489358 7_4:-63234257 None:intergenic
ATAAATTGTGACCATTCCAT+TGG 0.492230 7_4:+63238122 Msa1170120:CDS
GATTCAGAGCTTCGATAAGA+TGG 0.496481 7_4:+63234177 Msa1170120:CDS
AGCTATCAAGTTGCTTGTGC+TGG 0.499944 7_4:+63238559 Msa1170120:CDS
TCACTCAGCGGCTATGGCTA+TGG 0.502793 7_4:+63234117 None:intergenic
GTAAGGTGAACCTGAAGATC+CGG 0.506742 7_4:-63238727 None:intergenic
TCGACTGAACCCAGGGATGA+AGG 0.510337 7_4:+63241111 Msa1170120:three_prime_UTR
TGCATTGGAGGCAAAAGCGT+TGG 0.520539 7_4:+63238440 Msa1170120:CDS
ATCGAGAGCTGTACATTCAT+CGG 0.523237 7_4:+63240692 Msa1170120:CDS
GCCGTTCTACCTATCATTCA+GGG 0.525768 7_4:+63234271 Msa1170120:CDS
AAAAGTAAACCTTCATCCCT+GGG 0.526364 7_4:-63241120 None:intergenic
GTGTTTGTCAAATTTATGCT+AGG 0.528416 7_4:+63240999 Msa1170120:three_prime_UTR
TAAATTGTGACCATTCCATT+GGG 0.531754 7_4:+63238123 Msa1170120:CDS
GAGTCCTTGACATGATCAAA+AGG 0.531974 7_4:+63238519 Msa1170120:CDS
TTATGTTGATGTTGAAAGGG+AGG 0.536096 7_4:+63239430 Msa1170120:CDS
TGAGTGAGGGACCTCTGAGC+AGG 0.537060 7_4:-63238089 None:intergenic
TTTAATTGTGTCTCCGACAA+GGG 0.538538 7_4:+63238349 Msa1170120:CDS
CTTTAATTGTGTCTCCGACA+AGG 0.539027 7_4:+63238348 Msa1170120:CDS
GCACGCTGTTGAATGGATGA+AGG 0.539674 7_4:-63234250 None:intergenic
GAGCTGTACATTCATCGGAT+TGG 0.543246 7_4:+63240697 Msa1170120:CDS
TGTCCATTATCTTACATGCA+AGG 0.543686 7_4:+63241192 Msa1170120:three_prime_UTR
ATACGAGCACATGCATGCAT+TGG 0.549970 7_4:+63238425 Msa1170120:CDS
TTGTTTGCTCGACTGAACCC+AGG 0.550223 7_4:+63241103 Msa1170120:three_prime_UTR
AAGGGCAATGCAGTATATGT+TGG 0.553284 7_4:+63240969 Msa1170120:three_prime_UTR
TCAAAGCTTCGAGACATCGA+AGG 0.553831 7_4:+63234144 Msa1170120:CDS
ATGGAGCCTATGACCATGAC+AGG 0.559032 7_4:+63238216 Msa1170120:CDS
ATCATGTCAAGGACTCGGCC+AGG 0.564010 7_4:-63238512 None:intergenic
CATAGACAGTATACCTGTCA+TGG 0.565778 7_4:-63238229 None:intergenic
GATAGGTTCTTCTGACCCAA+TGG 0.565909 7_4:-63238138 None:intergenic
AAAATTAATCTCAGCCGTAT+CGG 0.568278 7_4:-63241147 None:intergenic
ATAAGATCAGCAACATTCAT+CGG 0.575456 7_4:-63240942 None:intergenic
ATTCAGAGCTTCGATAAGAT+GGG 0.579850 7_4:+63234178 Msa1170120:CDS
ACGTGATGAATTGACATTGG+AGG 0.580038 7_4:+63239316 Msa1170120:CDS
TGTTTGCTCGACTGAACCCA+GGG 0.581642 7_4:+63241104 Msa1170120:three_prime_UTR
ATTATGGATGAATTTCGTGC+TGG 0.582575 7_4:+63239736 Msa1170120:CDS
AAAACGTGATGAATTGACAT+TGG 0.590799 7_4:+63239313 Msa1170120:CDS
ACACGGAGTTCATGTAGTGT+CGG 0.591877 7_4:+63238484 Msa1170120:CDS
TTGATGTTGAAAGGGAGGAA+TGG 0.599804 7_4:+63239435 Msa1170120:CDS
TATATTCACCAGATGAGTGA+GGG 0.601227 7_4:-63238102 None:intergenic
ATAAATTTCATAAGTCAAGA+GGG 0.604623 7_4:+63238162 Msa1170120:CDS
TTCACTATCTCATCAATGCA+CGG 0.607282 7_4:+63239685 Msa1170120:CDS
GTCATCTCCAAAATTTCATG+AGG 0.612581 7_4:-63239254 None:intergenic
ATTCTGTAACACCAAGCGAA+AGG 0.615167 7_4:+63239514 Msa1170120:CDS
TGTGTATAGATATCTCCCTC+CGG 0.617507 7_4:+63238708 Msa1170120:CDS
TTATATTCACCAGATGAGTG+AGG 0.627176 7_4:-63238103 None:intergenic
GAATATAACAGCTTGAGTGA+TGG 0.627409 7_4:-63239495 None:intergenic
GTTCTTCTGACCCAATGGAA+TGG 0.630104 7_4:-63238133 None:intergenic
TTCGTCCAAAACGTCCAGAA+CGG 0.636927 7_4:-63240720 None:intergenic
ACCCTGAATGATAGGTAGAA+CGG 0.644492 7_4:-63234272 None:intergenic
CCATTATCTTACATGCAAGG+TGG 0.645222 7_4:+63241195 Msa1170120:three_prime_UTR
CAAAGCTTCGAGACATCGAA+GGG 0.648344 7_4:+63234145 Msa1170120:CDS
AGGTGAACCTGAAGATCCGG+AGG 0.649252 7_4:-63238724 None:intergenic
ATCAAAGACGATTTACTGCG+TGG 0.662617 7_4:+63234202 Msa1170120:CDS
AAAGCGTTGGAGAAGACACA+AGG 0.685686 7_4:+63238453 Msa1170120:CDS
ACGGAGTTCATGTAGTGTCG+GGG 0.690010 7_4:+63238486 Msa1170120:CDS
GACACAAGGAAACTTGAACA+CGG 0.692105 7_4:+63238467 Msa1170120:CDS
TCTGATGAAATGCTGAGCAG+AGG 0.698342 7_4:+63238664 Msa1170120:CDS
GGTGAACCTGAAGATCCGGA+GGG 0.711398 7_4:-63238723 None:intergenic
AGTTTATGACAGATCCTGTG+AGG 0.717164 7_4:+63239282 Msa1170120:CDS
AACAGTGAGAGCAATCATGG+AGG 0.733411 7_4:-63234335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAATT+TGG + chr7_4:63237147-63237166 Msa1170120:intron 0.0%
!!! TTTTACTTATATTACTTTTT+AGG + chr7_4:63236991-63237010 Msa1170120:intron 10.0%
!! CTTTAATATATCTTTGAATA+AGG + chr7_4:63234704-63234723 Msa1170120:intron 15.0%
!! AGTAAATTACATAGAAATTA+TGG - chr7_4:63235483-63235502 None:intergenic 15.0%
!! AATTTCTATGTAATTTACTT+AGG + chr7_4:63235484-63235503 Msa1170120:intron 15.0%
!!! GCTTTTAAAATATAATTTGT+GGG - chr7_4:63235532-63235551 None:intergenic 15.0%
!!! TGCTTTTAAAATATAATTTG+TGG - chr7_4:63235533-63235552 None:intergenic 15.0%
!!! TATACTTGATTTTTGAATTT+CGG - chr7_4:63236198-63236217 None:intergenic 15.0%
!! ATATTTGATAAAAATGAGTT+CGG + chr7_4:63236319-63236338 Msa1170120:intron 15.0%
!!! AATGTACTTATTTTAAAACA+TGG + chr7_4:63237998-63238017 Msa1170120:intron 15.0%
!!! ATATTTTTCTTTTTTATTGC+AGG + chr7_4:63238636-63238655 Msa1170120:intron 15.0%
!!! TTGTTTAATTTTTAATGTGT+AGG + chr7_4:63239208-63239227 Msa1170120:intron 15.0%
!! AAGGTAAATGAAAATTATAA+AGG + chr7_4:63239533-63239552 Msa1170120:intron 15.0%
!!! TAATATTTGTTTGTTATTAG+AGG + chr7_4:63240476-63240495 Msa1170120:intron 15.0%
!! TAAGAAATGTAACAATTAAA+TGG + chr7_4:63240589-63240608 Msa1170120:intron 15.0%
!!! AAGTTTTAGGTTGAATTTAT+TGG + chr7_4:63234454-63234473 Msa1170120:intron 20.0%
!!! TGAAGTTTTTTACTTTCTTT+AGG + chr7_4:63234495-63234514 Msa1170120:intron 20.0%
!!! TTTTAAACATTTTGTCACTA+GGG - chr7_4:63234966-63234985 None:intergenic 20.0%
!!! TATTTTAAAAGCAGACTAAT+TGG + chr7_4:63235540-63235559 Msa1170120:intron 20.0%
!!! ATGAAGGAAATTCATTTTTT+TGG + chr7_4:63235599-63235618 Msa1170120:intron 20.0%
!!! TTTTCATAATGAGAAACTAA+AGG + chr7_4:63235690-63235709 Msa1170120:intron 20.0%
!!! AATTTATTTTACCACTTACT+CGG - chr7_4:63235857-63235876 None:intergenic 20.0%
!!! GTAAGTGGTAAAATAAATTT+TGG + chr7_4:63235858-63235877 Msa1170120:intron 20.0%
!!! TGAAATTTGTATTAGTTTTG+CGG + chr7_4:63235964-63235983 Msa1170120:intron 20.0%
!!! ATGAGAGTTTTAATTTTCTT+TGG + chr7_4:63236029-63236048 Msa1170120:intron 20.0%
!!! TGAGAGTTTTAATTTTCTTT+GGG + chr7_4:63236030-63236049 Msa1170120:intron 20.0%
!! CACAAAAAAATAGATGAATA+TGG + chr7_4:63236283-63236302 Msa1170120:intron 20.0%
!!! GAAAAAAGTGTTAATGAATA+TGG + chr7_4:63236347-63236366 Msa1170120:intron 20.0%
!!! GTTTTTTTTTTCAACAACTT+TGG - chr7_4:63236420-63236439 None:intergenic 20.0%
!! ATCACTTAAAAATACACTTA+AGG - chr7_4:63236517-63236536 None:intergenic 20.0%
!! ATTTGAATAAGGAATGTATT+TGG + chr7_4:63236657-63236676 Msa1170120:intron 20.0%
!! AATCAATTCAATATCTCATA+TGG - chr7_4:63236688-63236707 None:intergenic 20.0%
!! AAGCTAGATTAATAATTTGA+TGG - chr7_4:63236857-63236876 None:intergenic 20.0%
!! GTAATATAAGTAAAACATGA+AGG - chr7_4:63236986-63237005 None:intergenic 20.0%
!! AAAATGATTAAAGATAGTGA+CGG - chr7_4:63237598-63237617 None:intergenic 20.0%
!! GACTTATGAAATTTATTGAT+AGG - chr7_4:63238158-63238177 None:intergenic 20.0%
!! AATAAATTTCATAAGTCAAG+AGG + chr7_4:63238161-63238180 Msa1170120:CDS 20.0%
!! ATAAATTTCATAAGTCAAGA+GGG + chr7_4:63238162-63238181 Msa1170120:CDS 20.0%
!! TCAAATTACAAAATTTCAGT+CGG - chr7_4:63238316-63238335 None:intergenic 20.0%
!!! TGAAATTTTGTAATTTGAAC+AGG + chr7_4:63238318-63238337 Msa1170120:intron 20.0%
!!! ACAAACTGAAAATGTTATTT+TGG + chr7_4:63238382-63238401 Msa1170120:CDS 20.0%
!!! AAAATGTTATTTTGGCAATT+GGG + chr7_4:63238390-63238409 Msa1170120:CDS 20.0%
!! AATTTGTCTGAATTAGAAAT+TGG - chr7_4:63238848-63238867 None:intergenic 20.0%
!! TTTCTAATTCAGACAAATTT+AGG + chr7_4:63238849-63238868 Msa1170120:intron 20.0%
!! ACAAATTTAGGTGATAAATA+GGG + chr7_4:63238861-63238880 Msa1170120:intron 20.0%
!!! AATTTTATGTTGATGTTGAA+AGG + chr7_4:63239426-63239445 Msa1170120:CDS 20.0%
!!! ATTTTATGTTGATGTTGAAA+GGG + chr7_4:63239427-63239446 Msa1170120:CDS 20.0%
!! GAAAATTATAAAGGTTCTTT+AGG + chr7_4:63239542-63239561 Msa1170120:intron 20.0%
!!! CTAGTCTTTATATTTACATA+TGG + chr7_4:63239596-63239615 Msa1170120:intron 20.0%
!! TTATATTTACATATGGTGAT+TGG + chr7_4:63239603-63239622 Msa1170120:intron 20.0%
!!! ATTGGTTATATATATCCTTT+TGG + chr7_4:63239621-63239640 Msa1170120:intron 20.0%
!! TATTATTATTACATACAGCA+AGG + chr7_4:63240350-63240369 Msa1170120:intron 20.0%
!!! TATTACTTGTTTCTTATAGT+TGG + chr7_4:63240813-63240832 Msa1170120:intron 20.0%
!!! ATTACTTGTTTCTTATAGTT+GGG + chr7_4:63240814-63240833 Msa1170120:intron 20.0%
!!! TTGCTATAAATTTTGTGAAA+AGG + chr7_4:63240859-63240878 Msa1170120:CDS 20.0%
!!! TGCTATAAATTTTGTGAAAA+GGG + chr7_4:63240860-63240879 Msa1170120:CDS 20.0%
! GTTATGTTTCAATTAGCATT+CGG + chr7_4:63234421-63234440 Msa1170120:intron 25.0%
!!! TTAGGTTGAATTTATTGGTT+AGG + chr7_4:63234459-63234478 Msa1170120:intron 25.0%
!! TAGGTTGAATTTATTGGTTA+GGG + chr7_4:63234460-63234479 Msa1170120:intron 25.0%
!!! TATTGGTTAGGGTTTTTATA+TGG + chr7_4:63234471-63234490 Msa1170120:intron 25.0%
! AACCTTGATTTCTTAAATCT+AGG - chr7_4:63234551-63234570 None:intergenic 25.0%
! TCTTGTATTAACTTAAACGA+CGG + chr7_4:63234659-63234678 Msa1170120:intron 25.0%
! ATTGGAAGACTGAAATTTAT+AGG + chr7_4:63234733-63234752 Msa1170120:intron 25.0%
! TTGTGATCATATGATGATAA+GGG - chr7_4:63234818-63234837 None:intergenic 25.0%
!!! GTTTTAAACATTTTGTCACT+AGG - chr7_4:63234967-63234986 None:intergenic 25.0%
! ATATTGAGAACAAAGCTAAA+AGG + chr7_4:63235153-63235172 Msa1170120:intron 25.0%
! CAGCAATTGCAAATTAAATA+TGG + chr7_4:63235333-63235352 Msa1170120:intron 25.0%
! ACAGTCAAAACACTAAAAAA+TGG + chr7_4:63236056-63236075 Msa1170120:intron 25.0%
!!! ATTTTGACTTTCTTCAAATG+TGG + chr7_4:63236155-63236174 Msa1170120:intron 25.0%
! TTGTGCAGAAAATTAATTGT+AGG - chr7_4:63236268-63236287 None:intergenic 25.0%
! GACAAAAAAAAAAAGAGTTG+CGG + chr7_4:63236369-63236388 Msa1170120:intron 25.0%
! ACAAAAAAAAAAAGAGTTGC+GGG + chr7_4:63236370-63236389 Msa1170120:intron 25.0%
! CAGGTCATAAAATATATTCA+TGG - chr7_4:63236611-63236630 None:intergenic 25.0%
!!! TACTTTTTAGGAATCAATAG+AGG + chr7_4:63237003-63237022 Msa1170120:intron 25.0%
!!! ACTTTTTAGGAATCAATAGA+GGG + chr7_4:63237004-63237023 Msa1170120:intron 25.0%
!! AATCAATAGAGGGTAATTTT+GGG + chr7_4:63237014-63237033 Msa1170120:intron 25.0%
!!! TTTTTAGGTTTGTGTGATAT+TGG + chr7_4:63237084-63237103 Msa1170120:intron 25.0%
! TGAGAAAATATTTCAAGACA+TGG + chr7_4:63237202-63237221 Msa1170120:intron 25.0%
! GAGAAAATATTTCAAGACAT+GGG + chr7_4:63237203-63237222 Msa1170120:intron 25.0%
! TTTGACTCAACTTTCTAATA+GGG + chr7_4:63237416-63237435 Msa1170120:intron 25.0%
! TCAAAATCCAAAATTGGATT+TGG + chr7_4:63237456-63237475 Msa1170120:intron 25.0%
!! AAAACTAGAGGTAATTTTGT+AGG - chr7_4:63237518-63237537 None:intergenic 25.0%
!!! GGATTTTAACATAAAACTAG+AGG - chr7_4:63237530-63237549 None:intergenic 25.0%
! TGTTGTCACAAATAGAAATA+AGG - chr7_4:63237691-63237710 None:intergenic 25.0%
! AAGCATACAATAAGCTATAT+AGG - chr7_4:63237735-63237754 None:intergenic 25.0%
!! AATTTTTCTCTGAATGCTAA+TGG + chr7_4:63238197-63238216 Msa1170120:CDS 25.0%
!! AATAACATTTTCAGTTTGTG+AGG - chr7_4:63238381-63238400 None:intergenic 25.0%
!!! GAAAATGTTATTTTGGCAAT+TGG + chr7_4:63238389-63238408 Msa1170120:CDS 25.0%
! GACAAATTTAGGTGATAAAT+AGG + chr7_4:63238860-63238879 Msa1170120:intron 25.0%
! ATGAATATGTTGTCTTCATT+TGG + chr7_4:63239011-63239030 Msa1170120:intron 25.0%
! ACCTCAATTTATAACTTAGT+TGG + chr7_4:63239071-63239090 Msa1170120:intron 25.0%
! TCCAACTAAGTTATAAATTG+AGG - chr7_4:63239075-63239094 None:intergenic 25.0%
! AGTTAAATATCAGAAAACAC+AGG - chr7_4:63239361-63239380 None:intergenic 25.0%
!! TGTGTTTTCTGATATTTAAC+TGG + chr7_4:63239360-63239379 Msa1170120:intron 25.0%
!!! TATATATATCCTTTTGGAAC+AGG + chr7_4:63239627-63239646 Msa1170120:intron 25.0%
! AGTTGTTAGTAGTTTATTCT+TGG + chr7_4:63239820-63239839 Msa1170120:intron 25.0%
! AAATAAAAAAACACATGGAC+TGG - chr7_4:63239870-63239889 None:intergenic 25.0%
!!! CTGAATTCATCATATTTTAG+AGG - chr7_4:63239896-63239915 None:intergenic 25.0%
!!! ATACTGATTCAAAGTAATCA+TGG - chr7_4:63239971-63239990 None:intergenic 25.0%
!! AATTTTAAACCTACTGCAAA+AGG - chr7_4:63240048-63240067 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr7_4:63240182-63240201 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr7_4:63240182-63240201 None:intergenic 25.0%
! CAAGTCAACATCAATATTTA+TGG - chr7_4:63240410-63240429 None:intergenic 25.0%
!! AAAAGATAAAAGCACAAACA+GGG - chr7_4:63240515-63240534 None:intergenic 25.0%
!! TGTTTGTGCTTTTATCTTTT+GGG + chr7_4:63240515-63240534 Msa1170120:intron 25.0%
! GAAATGTAACAATTAAATGG+AGG + chr7_4:63240592-63240611 Msa1170120:intron 25.0%
! TGTTGCTGATCTTATATAAA+AGG + chr7_4:63240950-63240969 Msa1170120:exon 25.0%
! GTTGCTGATCTTATATAAAA+GGG + chr7_4:63240951-63240970 Msa1170120:exon 25.0%
!! CTGAGATTAATTTTGTAAAC+TGG + chr7_4:63241156-63241175 Msa1170120:three_prime_UTR 25.0%
CTAATTGAAACATAACAGAG+AGG - chr7_4:63234417-63234436 None:intergenic 30.0%
GACCTAGATTTAAGAAATCA+AGG + chr7_4:63234546-63234565 Msa1170120:intron 30.0%
! CTTTGAATAAGGCACTATAT+TGG + chr7_4:63234715-63234734 Msa1170120:intron 30.0%
!!! TTTTTTACCAACAACGAAAG+AGG + chr7_4:63234772-63234791 Msa1170120:intron 30.0%
GTTGTGATCATATGATGATA+AGG - chr7_4:63234819-63234838 None:intergenic 30.0%
AAGGATCTTCAAGATATAGA+TGG - chr7_4:63234943-63234962 None:intergenic 30.0%
GTGAAACCATATACTAAAGT+GGG - chr7_4:63235022-63235041 None:intergenic 30.0%
! AGCTGAAATTTGGTTTACAA+GGG - chr7_4:63235100-63235119 None:intergenic 30.0%
AGTCTCATTATGTTAAGCAT+AGG - chr7_4:63235404-63235423 None:intergenic 30.0%
TATGGAAAGAAAACTGAAAG+AGG - chr7_4:63235465-63235484 None:intergenic 30.0%
AGTTTCACATTTAACCTGTT+AGG - chr7_4:63235628-63235647 None:intergenic 30.0%
ATAATGAGAAACTAAAGGCA+AGG + chr7_4:63235695-63235714 Msa1170120:intron 30.0%
! TATTCATGGTTTTCGTTCAA+TGG - chr7_4:63236597-63236616 None:intergenic 30.0%
TCATGATCAAATTAAGCTTC+AGG - chr7_4:63236630-63236649 None:intergenic 30.0%
! GAAGCTTAATTTGATCATGA+CGG + chr7_4:63236630-63236649 Msa1170120:intron 30.0%
ACTATAGAATAGATCTCTGA+TGG - chr7_4:63236747-63236766 None:intergenic 30.0%
! GAATCAATAGAGGGTAATTT+TGG + chr7_4:63237013-63237032 Msa1170120:intron 30.0%
!! TTGGGTTGAATTAACAGATT+AGG + chr7_4:63237032-63237051 Msa1170120:intron 30.0%
! TGGGTTGAATTAACAGATTA+GGG + chr7_4:63237033-63237052 Msa1170120:intron 30.0%
AACAAATCATGTGTCTTGAA+GGG - chr7_4:63237259-63237278 None:intergenic 30.0%
TAACAAATCATGTGTCTTGA+AGG - chr7_4:63237260-63237279 None:intergenic 30.0%
!! CAAGACACATGATTTGTTAT+AGG + chr7_4:63237261-63237280 Msa1170120:intron 30.0%
TTCATTAACAAACCACATGT+GGG - chr7_4:63237298-63237317 None:intergenic 30.0%
ATTCATTAACAAACCACATG+TGG - chr7_4:63237299-63237318 None:intergenic 30.0%
!! TATAAAGTGTGTTGTTTGCT+TGG + chr7_4:63237342-63237361 Msa1170120:intron 30.0%
GTTTGACTCAACTTTCTAAT+AGG + chr7_4:63237415-63237434 Msa1170120:intron 30.0%
TCAACTTTCTAATAGGGAAA+GGG + chr7_4:63237422-63237441 Msa1170120:intron 30.0%
AGAGGATCAAAATCCAAAAT+TGG + chr7_4:63237450-63237469 Msa1170120:intron 30.0%
AAATCCAAAATTGGATTTGG+AGG + chr7_4:63237459-63237478 Msa1170120:intron 30.0%
AATCCAAAATTGGATTTGGA+GGG + chr7_4:63237460-63237479 Msa1170120:intron 30.0%
ATAGGAGATGTTGTCAAAAA+AGG - chr7_4:63237717-63237736 None:intergenic 30.0%
! AGGTATACTGTCTATGATTT+TGG + chr7_4:63238236-63238255 Msa1170120:intron 30.0%
!! GTCAATTAGTTTGCAATTGT+TGG - chr7_4:63238278-63238297 None:intergenic 30.0%
! TTTCTTTCTTTTTCTCGTCA+AGG + chr7_4:63238605-63238624 Msa1170120:intron 30.0%
ATAAAATGACAGAGAAGGTA+AGG - chr7_4:63238747-63238766 None:intergenic 30.0%
!!! ACCTTCTCTGTCATTTTATT+TGG + chr7_4:63238748-63238767 Msa1170120:intron 30.0%
TCCAAATAAAATGACAGAGA+AGG - chr7_4:63238752-63238771 None:intergenic 30.0%
!!! CTCTGTCATTTTATTTGGAA+TGG + chr7_4:63238753-63238772 Msa1170120:intron 30.0%
CTACTTAGCAAAGTTGTAAT+TGG - chr7_4:63238805-63238824 None:intergenic 30.0%
ACTAAAACCAATCATCAAAC+AGG - chr7_4:63238907-63238926 None:intergenic 30.0%
AAAATCTGTATCAGCTATAG+AGG - chr7_4:63238990-63239009 None:intergenic 30.0%
AGGTAAAGTTTCAGATGATT+GGG - chr7_4:63239055-63239074 None:intergenic 30.0%
ACTTAGTTGGATGTATCTTT+AGG + chr7_4:63239084-63239103 Msa1170120:intron 30.0%
CTTAGTTGGATGTATCTTTA+GGG + chr7_4:63239085-63239104 Msa1170120:intron 30.0%
! TTACTCTTGTTGTAAACTTG+TGG + chr7_4:63239141-63239160 Msa1170120:intron 30.0%
ATTCAGAGACTACATAAGTT+TGG - chr7_4:63239189-63239208 None:intergenic 30.0%
! TCAATTCATCACGTTTTACA+AGG - chr7_4:63239310-63239329 None:intergenic 30.0%
AAAACGTGATGAATTGACAT+TGG + chr7_4:63239313-63239332 Msa1170120:CDS 30.0%
! ATTTTCATTTACCTTTCGCT+TGG - chr7_4:63239528-63239547 None:intergenic 30.0%
! TATAAAGGTTCTTTAGGAAC+AGG + chr7_4:63239548-63239567 Msa1170120:intron 30.0%
AAGAGAAAGAGATGCAATTA+TGG + chr7_4:63239720-63239739 Msa1170120:CDS 30.0%
!! TATTGATAACGACTGATGTT+TGG + chr7_4:63239770-63239789 Msa1170120:CDS 30.0%
!! ATTGATAACGACTGATGTTT+GGG + chr7_4:63239771-63239790 Msa1170120:CDS 30.0%
GGCACAAATAAAAAAACACA+TGG - chr7_4:63239875-63239894 None:intergenic 30.0%
ATCAAATTCCGTGTAAAACT+GGG - chr7_4:63240076-63240095 None:intergenic 30.0%
! CAAAAGATAAAAGCACAAAC+AGG - chr7_4:63240516-63240535 None:intergenic 30.0%
! CTGTTTGTGCTTTTATCTTT+TGG + chr7_4:63240514-63240533 Msa1170120:intron 30.0%
! TCTGAAGTAAGTAGTTAGTA+TGG + chr7_4:63240779-63240798 Msa1170120:intron 30.0%
ATAAGATCAGCAACATTCAT+CGG - chr7_4:63240945-63240964 None:intergenic 30.0%
GTGTTTGTCAAATTTATGCT+AGG + chr7_4:63240999-63241018 Msa1170120:three_prime_UTR 30.0%
GTCAAATTTATGCTAGGAAT+TGG + chr7_4:63241005-63241024 Msa1170120:three_prime_UTR 30.0%
CTTATGAAACTCTTGACATA+TGG + chr7_4:63241067-63241086 Msa1170120:three_prime_UTR 30.0%
!!! GTTTACTTTTTTTGCCGATA+CGG + chr7_4:63241133-63241152 Msa1170120:three_prime_UTR 30.0%
AAAATTAATCTCAGCCGTAT+CGG - chr7_4:63241150-63241169 None:intergenic 30.0%
ATTCAGAGCTTCGATAAGAT+GGG + chr7_4:63234178-63234197 Msa1170120:CDS 35.0%
AAGGTTTCTCAAAACCGTAT+TGG - chr7_4:63234234-63234253 None:intergenic 35.0%
! CGGAAACTTGAGTAAGTTTT+AGG + chr7_4:63234441-63234460 Msa1170120:intron 35.0%
AACAATACCAAACACGTTTG+TGG - chr7_4:63234616-63234635 None:intergenic 35.0%
! AAACATTTTGTCACTAGGGA+AGG - chr7_4:63234962-63234981 None:intergenic 35.0%
TGGATTCCCACTTTAGTATA+TGG + chr7_4:63235013-63235032 Msa1170120:intron 35.0%
CGTGAAACCATATACTAAAG+TGG - chr7_4:63235023-63235042 None:intergenic 35.0%
! CAGCTGAAATTTGGTTTACA+AGG - chr7_4:63235101-63235120 None:intergenic 35.0%
GAATTCTGACAGCTGAAATT+TGG - chr7_4:63235110-63235129 None:intergenic 35.0%
ATGCTTACGTTGGAATATGT+GGG - chr7_4:63235265-63235284 None:intergenic 35.0%
! CAGACTACAGTTTTCAATGA+AGG + chr7_4:63235583-63235602 Msa1170120:intron 35.0%
!!! CATTTTTTTGGCATCCTAAC+AGG + chr7_4:63235611-63235630 Msa1170120:intron 35.0%
ACAGGTTAAATGTGAAACTG+TGG + chr7_4:63235629-63235648 Msa1170120:intron 35.0%
! AGTTTTGCGGAGAAAATGAA+AGG + chr7_4:63235977-63235996 Msa1170120:intron 35.0%
! GTTTTGCGGAGAAAATGAAA+GGG + chr7_4:63235978-63235997 Msa1170120:intron 35.0%
CAAATGTGGAATAGAGACAA+AGG + chr7_4:63236169-63236188 Msa1170120:intron 35.0%
! TAGGCATTAGTCTGAAGATT+GGG - chr7_4:63236249-63236268 None:intergenic 35.0%
AAAAAAAAAGAGTTGCGGGA+AGG + chr7_4:63236374-63236393 Msa1170120:intron 35.0%
! CTTAATTTGATCATGACGGT+TGG + chr7_4:63236634-63236653 Msa1170120:intron 35.0%
ATGACGGTTGGATTTGAATA+AGG + chr7_4:63236646-63236665 Msa1170120:intron 35.0%
!! TTGTTTTACACGATCTCTGA+TGG - chr7_4:63236800-63236819 None:intergenic 35.0%
TCAGAGATCGTGTAAAACAA+AGG + chr7_4:63236800-63236819 Msa1170120:intron 35.0%
! AACAGATTAGGGTTTTCCAA+TGG + chr7_4:63237044-63237063 Msa1170120:intron 35.0%
TGACGTGGATTTAAGAAATG+AGG + chr7_4:63237108-63237127 Msa1170120:intron 35.0%
GACGTGGATTTAAGAAATGA+GGG + chr7_4:63237109-63237128 Msa1170120:intron 35.0%
CTCAACTTTCTAATAGGGAA+AGG + chr7_4:63237421-63237440 Msa1170120:intron 35.0%
AAAATTGGATTTGGAGGGAA+GGG + chr7_4:63237465-63237484 Msa1170120:intron 35.0%
TACAACAACAATGAAGAGAG+GGG - chr7_4:63237624-63237643 None:intergenic 35.0%
CTACAACAACAATGAAGAGA+GGG - chr7_4:63237625-63237644 None:intergenic 35.0%
ACTACAACAACAATGAAGAG+AGG - chr7_4:63237626-63237645 None:intergenic 35.0%
! CTCTTCATTGTTGTTGTAGT+TGG + chr7_4:63237626-63237645 Msa1170120:intron 35.0%
! AAAGTGCATGTTTTGTACCA+CGG + chr7_4:63237835-63237854 Msa1170120:intron 35.0%
TATATTCACCAGATGAGTGA+GGG - chr7_4:63238105-63238124 None:intergenic 35.0%
TTATATTCACCAGATGAGTG+AGG - chr7_4:63238106-63238125 None:intergenic 35.0%
TTGTAATTTGAACAGGTTGC+AGG + chr7_4:63238325-63238344 Msa1170120:intron 35.0%
TTTAATTGTGTCTCCGACAA+GGG + chr7_4:63238349-63238368 Msa1170120:CDS 35.0%
! TTTTGATCATGTCAAGGACT+CGG - chr7_4:63238520-63238539 None:intergenic 35.0%
! TTCTCCTTTTGATCATGTCA+AGG - chr7_4:63238526-63238545 None:intergenic 35.0%
TTTGCTAAGTAGACTTCACA+AGG + chr7_4:63238813-63238832 Msa1170120:intron 35.0%
GGTGATAAATAGGGTTAAAG+AGG + chr7_4:63238870-63238889 Msa1170120:intron 35.0%
TAACAACATAATTTCCCCTC+AGG - chr7_4:63238962-63238981 None:intergenic 35.0%
GAGGTAAAGTTTCAGATGAT+TGG - chr7_4:63239056-63239075 None:intergenic 35.0%
! TACGCTACCTCATGAAATTT+TGG + chr7_4:63239247-63239266 Msa1170120:CDS 35.0%
GTCATCTCCAAAATTTCATG+AGG - chr7_4:63239257-63239276 None:intergenic 35.0%
TTATGTTGATGTTGAAAGGG+AGG + chr7_4:63239430-63239449 Msa1170120:CDS 35.0%
GAATATAACAGCTTGAGTGA+TGG - chr7_4:63239498-63239517 None:intergenic 35.0%
!!! ATATATCCTTTTGGAACAGG+TGG + chr7_4:63239630-63239649 Msa1170120:intron 35.0%
TTCACTATCTCATCAATGCA+CGG + chr7_4:63239685-63239704 Msa1170120:CDS 35.0%
ATTGCATCTCTTTCTCTTTG+AGG - chr7_4:63239718-63239737 None:intergenic 35.0%
ATTATGGATGAATTTCGTGC+TGG + chr7_4:63239736-63239755 Msa1170120:CDS 35.0%
!!! AAAAACTAGCCTTTTGCAGT+AGG + chr7_4:63240036-63240055 Msa1170120:intron 35.0%
GATCAAATTCCGTGTAAAAC+TGG - chr7_4:63240077-63240096 None:intergenic 35.0%
! GTCAGCAATTACTGTGTTTT+GGG - chr7_4:63240311-63240330 None:intergenic 35.0%
ATATCTTCCTACTTCTGTTC+AGG - chr7_4:63240333-63240352 None:intergenic 35.0%
!! TGTGCTTTTATCTTTTGGGT+CGG + chr7_4:63240519-63240538 Msa1170120:intron 35.0%
TGATAACAGAAACAAGTGCA+CGG - chr7_4:63240637-63240656 None:intergenic 35.0%
ATGTACAGCTCTCGATTATT+TGG - chr7_4:63240688-63240707 None:intergenic 35.0%
AAAAGTAAACCTTCATCCCT+GGG - chr7_4:63241123-63241142 None:intergenic 35.0%
AAAAAGTAAACCTTCATCCC+TGG - chr7_4:63241124-63241143 None:intergenic 35.0%
TGTCCATTATCTTACATGCA+AGG + chr7_4:63241192-63241211 Msa1170120:three_prime_UTR 35.0%
GATTCAGAGCTTCGATAAGA+TGG + chr7_4:63234177-63234196 Msa1170120:CDS 40.0%
ATCAAAGACGATTTACTGCG+TGG + chr7_4:63234202-63234221 Msa1170120:CDS 40.0%
CTGCGTGGAATTTACCAATA+CGG + chr7_4:63234217-63234236 Msa1170120:CDS 40.0%
ACCCTGAATGATAGGTAGAA+CGG - chr7_4:63234275-63234294 None:intergenic 40.0%
AAGAGGAACTCACTCTTTGA+CGG - chr7_4:63234380-63234399 None:intergenic 40.0%
AGGAGAGAGAAGATGAAAAG+AGG - chr7_4:63234397-63234416 None:intergenic 40.0%
! GCTTTATGTTTCTGTGACAC+TGG + chr7_4:63234521-63234540 Msa1170120:intron 40.0%
ACCAACAACGAAAGAGGTTA+AGG + chr7_4:63234778-63234797 Msa1170120:intron 40.0%
TCCTTAACCTCTTTCGTTGT+TGG - chr7_4:63234782-63234801 None:intergenic 40.0%
! ATGTTGTGCGTGATGGAAAT+TGG - chr7_4:63234994-63235013 None:intergenic 40.0%
AATTTCCATCACGCACAACA+TGG + chr7_4:63234993-63235012 Msa1170120:intron 40.0%
GATGCTTACGTTGGAATATG+TGG - chr7_4:63235266-63235285 None:intergenic 40.0%
CAAATGACTGATGCTTACGT+TGG - chr7_4:63235275-63235294 None:intergenic 40.0%
CAACGTAAGCATCAGTCATT+TGG + chr7_4:63235273-63235292 Msa1170120:intron 40.0%
TTTGTGCAAAGTCATGAAGC+AGG + chr7_4:63235915-63235934 Msa1170120:intron 40.0%
!! GTGTCATTGACACTTTTGTG+TGG - chr7_4:63236110-63236129 None:intergenic 40.0%
AAGATTGGGAAGACAACTTC+TGG - chr7_4:63236235-63236254 None:intergenic 40.0%
! GTAGGCATTAGTCTGAAGAT+TGG - chr7_4:63236250-63236269 None:intergenic 40.0%
!!! GGTCTCTGTCATTTTGTTGA+AGG + chr7_4:63236821-63236840 Msa1170120:intron 40.0%
! GATTAGGGTTTTCCAATGGT+TGG + chr7_4:63237048-63237067 Msa1170120:intron 40.0%
! CAATGGTTGGAGTTGTTTCA+GGG + chr7_4:63237061-63237080 Msa1170120:intron 40.0%
!! GGAGTTGTTTCAGGGTTTTT+AGG + chr7_4:63237069-63237088 Msa1170120:intron 40.0%
TTGTGTGATATTGGATGACG+TGG + chr7_4:63237093-63237112 Msa1170120:intron 40.0%
GTGCATATAATACCCACATG+TGG + chr7_4:63237283-63237302 Msa1170120:intron 40.0%
! TGTTGTTTGCTTGGTCTGTT+TGG + chr7_4:63237351-63237370 Msa1170120:intron 40.0%
ACTTTCTAATAGGGAAAGGG+AGG + chr7_4:63237425-63237444 Msa1170120:intron 40.0%
CTTTCTAATAGGGAAAGGGA+GGG + chr7_4:63237426-63237445 Msa1170120:intron 40.0%
! CTTCCCTCCAAATCCAATTT+TGG - chr7_4:63237466-63237485 None:intergenic 40.0%
CAAAATTGGATTTGGAGGGA+AGG + chr7_4:63237464-63237483 Msa1170120:intron 40.0%
GAGACGCACGAGTTAAATAT+TGG - chr7_4:63237551-63237570 None:intergenic 40.0%
! TAGTTGGCACTTTGACTTCT+CGG + chr7_4:63237642-63237661 Msa1170120:intron 40.0%
AGTTCAACATGCCCAAATCA+AGG - chr7_4:63237923-63237942 None:intergenic 40.0%
GATTTGGGCATGTTGAACTA+TGG + chr7_4:63237924-63237943 Msa1170120:intron 40.0%
TATTTGAGAATGCCCTGTGA+TGG + chr7_4:63238041-63238060 Msa1170120:intron 40.0%
AGTATACCTGTCATGGTCAT+AGG - chr7_4:63238225-63238244 None:intergenic 40.0%
CATAGACAGTATACCTGTCA+TGG - chr7_4:63238232-63238251 None:intergenic 40.0%
CTTTAATTGTGTCTCCGACA+AGG + chr7_4:63238348-63238367 Msa1170120:CDS 40.0%
GACACAAGGAAACTTGAACA+CGG + chr7_4:63238467-63238486 Msa1170120:CDS 40.0%
GAGTCCTTGACATGATCAAA+AGG + chr7_4:63238519-63238538 Msa1170120:CDS 40.0%
TGTGTATAGATATCTCCCTC+CGG + chr7_4:63238708-63238727 Msa1170120:CDS 40.0%
! TGATGTGCCTGTTTGATGAT+TGG + chr7_4:63238897-63238916 Msa1170120:intron 40.0%
CTCATTTCCACTCCTTCATA+TGG - chr7_4:63238939-63238958 None:intergenic 40.0%
AGTTTGGAAAGAATGCAGAC+AGG - chr7_4:63239173-63239192 None:intergenic 40.0%
AGTTTATGACAGATCCTGTG+AGG + chr7_4:63239282-63239301 Msa1170120:CDS 40.0%
ACGTGATGAATTGACATTGG+AGG + chr7_4:63239316-63239335 Msa1170120:CDS 40.0%
TTGATGTTGAAAGGGAGGAA+TGG + chr7_4:63239435-63239454 Msa1170120:CDS 40.0%
ATTCTGTAACACCAAGCGAA+AGG + chr7_4:63239514-63239533 Msa1170120:CDS 40.0%
! ATTTCACGCCCAGTTTTACA+CGG + chr7_4:63240065-63240084 Msa1170120:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr7_4:63240111-63240130 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr7_4:63240112-63240131 None:intergenic 40.0%
! GGTCAGCAATTACTGTGTTT+TGG - chr7_4:63240312-63240331 None:intergenic 40.0%
ATGTGCTCAAGCATTCCAAT+TGG + chr7_4:63240430-63240449 Msa1170120:intron 40.0%
TGTGCTCAAGCATTCCAATT+GGG + chr7_4:63240431-63240450 Msa1170120:intron 40.0%
!! GTGCTTTTATCTTTTGGGTC+GGG + chr7_4:63240520-63240539 Msa1170120:intron 40.0%
!! TGCTTTTATCTTTTGGGTCG+GGG + chr7_4:63240521-63240540 Msa1170120:intron 40.0%
!! GTGCACTTGTTTCTGTTATC+AGG + chr7_4:63240636-63240655 Msa1170120:intron 40.0%
ATCGAGAGCTGTACATTCAT+CGG + chr7_4:63240692-63240711 Msa1170120:CDS 40.0%
!! ACGTTTTGGACGAAAGGTAT+TGG + chr7_4:63240729-63240748 Msa1170120:intron 40.0%
!!! CGTTTTGGACGAAAGGTATT+GGG + chr7_4:63240730-63240749 Msa1170120:intron 40.0%
CTTATAGTTGGGCCTAATCA+TGG + chr7_4:63240825-63240844 Msa1170120:intron 40.0%
AAGGGCAATGCAGTATATGT+TGG + chr7_4:63240969-63240988 Msa1170120:three_prime_UTR 40.0%
CCACCTTGCATGTAAGATAA+TGG - chr7_4:63241198-63241217 None:intergenic 40.0%
CCATTATCTTACATGCAAGG+TGG + chr7_4:63241195-63241214 Msa1170120:three_prime_UTR 40.0%
TCAAAGCTTCGAGACATCGA+AGG + chr7_4:63234144-63234163 Msa1170120:CDS 45.0%
CAAAGCTTCGAGACATCGAA+GGG + chr7_4:63234145-63234164 Msa1170120:CDS 45.0%
TGCCGTTCTACCTATCATTC+AGG + chr7_4:63234270-63234289 Msa1170120:CDS 45.0%
GCCGTTCTACCTATCATTCA+GGG + chr7_4:63234271-63234290 Msa1170120:CDS 45.0%
AACAGTGAGAGCAATCATGG+AGG - chr7_4:63234338-63234357 None:intergenic 45.0%
GCAAACAGTGAGAGCAATCA+TGG - chr7_4:63234341-63234360 None:intergenic 45.0%
TACCAAACACGTTTGTGGAG+TGG - chr7_4:63234611-63234630 None:intergenic 45.0%
! ACGACGGCTATGTTTGTTGA+CGG + chr7_4:63234675-63234694 Msa1170120:intron 45.0%
TTACGTTGGAATATGTGGGC+AGG - chr7_4:63235261-63235280 None:intergenic 45.0%
CCACTTACTCGGAAAGATGA+CGG - chr7_4:63235846-63235865 None:intergenic 45.0%
TGGGAAGACAACTTCTGGTA+TGG - chr7_4:63236230-63236249 None:intergenic 45.0%
CAGCAGAGGAGAGAAGAAAA+AGG + chr7_4:63236468-63236487 Msa1170120:intron 45.0%
TCGGCATTGTGACAGATCAA+TGG - chr7_4:63236925-63236944 None:intergenic 45.0%
GTTTGCGGTGATACAAGACT+CGG - chr7_4:63236944-63236963 None:intergenic 45.0%
ACTCCACAAATGCGTGTTTG+CGG - chr7_4:63236959-63236978 None:intergenic 45.0%
CCTGAAACAACTCCAACCAT+TGG - chr7_4:63237063-63237082 None:intergenic 45.0%
! CCAATGGTTGGAGTTGTTTC+AGG + chr7_4:63237060-63237079 Msa1170120:intron 45.0%
GTTTGCTTGGTCTGTTTGGT+TGG + chr7_4:63237355-63237374 Msa1170120:intron 45.0%
TGATTTCTGCAAAACCACCG+TGG - chr7_4:63237855-63237874 None:intergenic 45.0%
!! CGGTGGTTTTGCAGAAATCA+TGG + chr7_4:63237855-63237874 Msa1170120:intron 45.0%
ATGTTGCCAAAGCGGTCTTA+TGG + chr7_4:63237890-63237909 Msa1170120:intron 45.0%
TATGGTGGCTCACCTTGATT+TGG + chr7_4:63237908-63237927 Msa1170120:intron 45.0%
ATGGTGGCTCACCTTGATTT+GGG + chr7_4:63237909-63237928 Msa1170120:intron 45.0%
GTTCTTCTGACCCAATGGAA+TGG - chr7_4:63238136-63238155 None:intergenic 45.0%
GATAGGTTCTTCTGACCCAA+TGG - chr7_4:63238141-63238160 None:intergenic 45.0%
ATACGAGCACATGCATGCAT+TGG + chr7_4:63238425-63238444 Msa1170120:CDS 45.0%
!! AAAGCGTTGGAGAAGACACA+AGG + chr7_4:63238453-63238472 Msa1170120:CDS 45.0%
ACACGGAGTTCATGTAGTGT+CGG + chr7_4:63238484-63238503 Msa1170120:CDS 45.0%
! AGCTATCAAGTTGCTTGTGC+TGG + chr7_4:63238559-63238578 Msa1170120:CDS 45.0%
TCTGATGAAATGCTGAGCAG+AGG + chr7_4:63238664-63238683 Msa1170120:CDS 45.0%
GTAAGGTGAACCTGAAGATC+CGG - chr7_4:63238730-63238749 None:intergenic 45.0%
AGTGACCTGACACCATATGA+AGG + chr7_4:63238924-63238943 Msa1170120:intron 45.0%
! CGTTTTACAAGGATCCTCAC+AGG - chr7_4:63239299-63239318 None:intergenic 45.0%
ATTACCCGCCTCATGATTAC+AGG + chr7_4:63239394-63239413 Msa1170120:intron 45.0%
TTACCCGCCTCATGATTACA+GGG + chr7_4:63239395-63239414 Msa1170120:intron 45.0%
GGTCACTGGTCAAACAAGTT+AGG - chr7_4:63239849-63239868 None:intergenic 45.0%
!! AAAACACATGGACTGGTCAC+TGG - chr7_4:63239863-63239882 None:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG - chr7_4:63240107-63240126 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr7_4:63240113-63240132 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr7_4:63240110-63240129 Msa1170120:intron 45.0%
GTGGGATAAAGCTTGGTTGT+TGG + chr7_4:63240117-63240136 Msa1170120:intron 45.0%
TTGCTGACCTGAACAGAAGT+AGG + chr7_4:63240323-63240342 Msa1170120:intron 45.0%
GAGCTGTACATTCATCGGAT+TGG + chr7_4:63240697-63240716 Msa1170120:CDS 45.0%
TTCGTCCAAAACGTCCAGAA+CGG - chr7_4:63240723-63240742 None:intergenic 45.0%
!! TTCTGGACGTTTTGGACGAA+AGG + chr7_4:63240723-63240742 Msa1170120:CDS 45.0%
ACACCCTGCAAACCATGATT+AGG - chr7_4:63240840-63240859 None:intergenic 45.0%
!!! ATTATTATATATTTTTACTA+TGG - chr7_4:63236011-63236030 None:intergenic 5.0%
GCACGCTGTTGAATGGATGA+AGG - chr7_4:63234253-63234272 None:intergenic 50.0%
TAGAACGGCACGCTGTTGAA+TGG - chr7_4:63234260-63234279 None:intergenic 50.0%
ACGTCACGACCCTGAATGAT+AGG - chr7_4:63234283-63234302 None:intergenic 50.0%
GTCATCGCTCAGTCTCAATC+TGG + chr7_4:63234301-63234320 Msa1170120:CDS 50.0%
! GCTCAGTCTCAATCTGGAAC+CGG + chr7_4:63234307-63234326 Msa1170120:CDS 50.0%
AGCAATCATGGAGGACTTGC+CGG - chr7_4:63234329-63234348 None:intergenic 50.0%
GATTGCTCTCACTGTTTGCC+AGG + chr7_4:63234342-63234361 Msa1170120:CDS 50.0%
!! TGACGGAGGTATCAACAACC+TGG - chr7_4:63234363-63234382 None:intergenic 50.0%
AGGAACTCACTCTTTGACGG+AGG - chr7_4:63234377-63234396 None:intergenic 50.0%
CTCCACTCCACAAACGTGTT+TGG + chr7_4:63234606-63234625 Msa1170120:intron 50.0%
! CGACGGCTATGTTTGTTGAC+GGG + chr7_4:63234676-63234695 Msa1170120:intron 50.0%
GGAATCCATGTTGTGCGTGA+TGG - chr7_4:63235001-63235020 None:intergenic 50.0%
GTTGGAATATGTGGGCAGGA+AGG - chr7_4:63235257-63235276 None:intergenic 50.0%
CCGTCATCTTTCCGAGTAAG+TGG + chr7_4:63235843-63235862 Msa1170120:intron 50.0%
TGTCTCTGCTGAACTGACAG+AGG - chr7_4:63236444-63236463 None:intergenic 50.0%
AGCAGAGACAACTTCAGCAG+AGG + chr7_4:63236454-63236473 Msa1170120:intron 50.0%
TCACCGCAAACACGCATTTG+TGG + chr7_4:63236953-63236972 Msa1170120:intron 50.0%
TGCTTGGTCTGTTTGGTTGG+AGG + chr7_4:63237358-63237377 Msa1170120:intron 50.0%
TGGTCTGTTTGGTTGGAGGT+AGG + chr7_4:63237362-63237381 Msa1170120:intron 50.0%
TCTGTTTGGTTGGAGGTAGG+TGG + chr7_4:63237365-63237384 Msa1170120:intron 50.0%
TTTGGTTGGAGGTAGGTGGA+GGG + chr7_4:63237369-63237388 Msa1170120:intron 50.0%
AATAGGGAAAGGGAGGGAAG+AGG + chr7_4:63237432-63237451 Msa1170120:intron 50.0%
! GTGCATGTTTTGTACCACGG+TGG + chr7_4:63237838-63237857 Msa1170120:intron 50.0%
CCACCATGATGTTGCCAAAG+CGG + chr7_4:63237882-63237901 Msa1170120:intron 50.0%
AGACCGCTTTGGCAACATCA+TGG - chr7_4:63237888-63237907 None:intergenic 50.0%
! TTGCCAAAGCGGTCTTATGG+TGG + chr7_4:63237893-63237912 Msa1170120:intron 50.0%
AATGCCCTGTGATGGTCAGT+TGG + chr7_4:63238049-63238068 Msa1170120:intron 50.0%
ATGCCCTGTGATGGTCAGTT+GGG + chr7_4:63238050-63238069 Msa1170120:intron 50.0%
! GGTCAGTTGGGCTGTTCTTT+TGG + chr7_4:63238062-63238081 Msa1170120:intron 50.0%
!!! CTTTTGGTTAGCCTGCTCAG+AGG + chr7_4:63238078-63238097 Msa1170120:intron 50.0%
ATGGAGCCTATGACCATGAC+AGG + chr7_4:63238216-63238235 Msa1170120:CDS 50.0%
TGTGTCTCCGACAAGGGAAT+TGG + chr7_4:63238355-63238374 Msa1170120:CDS 50.0%
TGTGAGGCCAATTCCCTTGT+CGG - chr7_4:63238365-63238384 None:intergenic 50.0%
! TGCATTGGAGGCAAAAGCGT+TGG + chr7_4:63238440-63238459 Msa1170120:CDS 50.0%
CACGGAGTTCATGTAGTGTC+GGG + chr7_4:63238485-63238504 Msa1170120:CDS 50.0%
ACGGAGTTCATGTAGTGTCG+GGG + chr7_4:63238486-63238505 Msa1170120:CDS 50.0%
ATATCTCCCTCCGGATCTTC+AGG + chr7_4:63238717-63238736 Msa1170120:CDS 50.0%
CCACTCCTTCATATGGTGTC+AGG - chr7_4:63238932-63238951 None:intergenic 50.0%
CCTGACACCATATGAAGGAG+TGG + chr7_4:63238929-63238948 Msa1170120:intron 50.0%
AAGGAGTGGAAATGAGCCTG+AGG + chr7_4:63238943-63238962 Msa1170120:intron 50.0%
AGGAGTGGAAATGAGCCTGA+GGG + chr7_4:63238944-63238963 Msa1170120:intron 50.0%
!! GGATGTATCTTTAGGGTCCG+TGG + chr7_4:63239092-63239111 Msa1170120:intron 50.0%
CGCACATCACTCCAGTAACT+GGG - chr7_4:63239119-63239138 None:intergenic 50.0%
ACGCACATCACTCCAGTAAC+TGG - chr7_4:63239120-63239139 None:intergenic 50.0%
ATGCCCTGTAATCATGAGGC+GGG - chr7_4:63239401-63239420 None:intergenic 50.0%
GATGCCCTGTAATCATGAGG+CGG - chr7_4:63239402-63239421 None:intergenic 50.0%
CCTGATGCCCTGTAATCATG+AGG - chr7_4:63239405-63239424 None:intergenic 50.0%
! CCTCATGATTACAGGGCATC+AGG + chr7_4:63239402-63239421 Msa1170120:intron 50.0%
!!! TCCTTTTGGAACAGGTGGAC+TGG + chr7_4:63239635-63239654 Msa1170120:intron 50.0%
ACCAGTCCACCTGTTCCAAA+AGG - chr7_4:63239639-63239658 None:intergenic 50.0%
TCGTGGACTTGATGTACAGC+AGG + chr7_4:63239795-63239814 Msa1170120:intron 50.0%
ACTAAGTGGGGTCGGTTACA+TGG - chr7_4:63240099-63240118 None:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG + chr7_4:63240098-63240117 Msa1170120:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG + chr7_4:63240099-63240118 Msa1170120:intron 50.0%
AGCACAAGTGCATGCCCAAT+TGG - chr7_4:63240448-63240467 None:intergenic 50.0%
!! TATCTTTTGGGTCGGGGTGA+AGG + chr7_4:63240527-63240546 Msa1170120:intron 50.0%
!! ATTCATCGGATTGGCCGTTC+TGG + chr7_4:63240706-63240725 Msa1170120:CDS 50.0%
!! ATTGGCCGTTCTGGACGTTT+TGG + chr7_4:63240715-63240734 Msa1170120:CDS 50.0%
! TGGGCCTAATCATGGTTTGC+AGG + chr7_4:63240833-63240852 Msa1170120:intron 50.0%
! GGGCCTAATCATGGTTTGCA+GGG + chr7_4:63240834-63240853 Msa1170120:intron 50.0%
TTGTTTGCTCGACTGAACCC+AGG + chr7_4:63241103-63241122 Msa1170120:three_prime_UTR 50.0%
TGTTTGCTCGACTGAACCCA+GGG + chr7_4:63241104-63241123 Msa1170120:three_prime_UTR 50.0%
CTCCTCCAAGAGTGAGTGAG+TGG + chr7_4:63237170-63237189 Msa1170120:intron 55.0%
CTCCACTCACTCACTCTTGG+AGG - chr7_4:63237175-63237194 None:intergenic 55.0%
GCTCTCCACTCACTCACTCT+TGG - chr7_4:63237178-63237197 None:intergenic 55.0%
GTTTGGTTGGAGGTAGGTGG+AGG + chr7_4:63237368-63237387 Msa1170120:intron 55.0%
TTGGTTGGAGGTAGGTGGAG+GGG + chr7_4:63237370-63237389 Msa1170120:intron 55.0%
CCGCTTTGGCAACATCATGG+TGG - chr7_4:63237885-63237904 None:intergenic 55.0%
GAGCCACCATAAGACCGCTT+TGG - chr7_4:63237899-63237918 None:intergenic 55.0%
CAGCCCAACTGACCATCACA+GGG - chr7_4:63238056-63238075 None:intergenic 55.0%
ACAGCCCAACTGACCATCAC+AGG - chr7_4:63238057-63238076 None:intergenic 55.0%
TCAGAGGTCCCTCACTCATC+TGG + chr7_4:63238094-63238113 Msa1170120:CDS 55.0%
CGAGCACATGCATGCATTGG+AGG + chr7_4:63238428-63238447 Msa1170120:CDS 55.0%
ATCATGTCAAGGACTCGGCC+AGG - chr7_4:63238515-63238534 None:intergenic 55.0%
GGTGAACCTGAAGATCCGGA+GGG - chr7_4:63238726-63238745 None:intergenic 55.0%
AGGTGAACCTGAAGATCCGG+AGG - chr7_4:63238727-63238746 None:intergenic 55.0%
GGAGTGGAAATGAGCCTGAG+GGG + chr7_4:63238945-63238964 Msa1170120:intron 55.0%
CACTCCAGTAACTGGGACCA+CGG - chr7_4:63239112-63239131 None:intergenic 55.0%
ACGACTGATGTTTGGGCTCG+TGG + chr7_4:63239778-63239797 Msa1170120:CDS 55.0%
TCGACTGAACCCAGGGATGA+AGG + chr7_4:63241111-63241130 Msa1170120:three_prime_UTR 55.0%
TTGGAGGTAGGTGGAGGGGA+GGG + chr7_4:63237374-63237393 Msa1170120:intron 60.0%
TGAGTGAGGGACCTCTGAGC+AGG - chr7_4:63238092-63238111 None:intergenic 60.0%
! CATGTAGTGTCGGGGACTCC+TGG + chr7_4:63238494-63238513 Msa1170120:CDS 60.0%
GTTGGAGGTAGGTGGAGGGG+AGG + chr7_4:63237373-63237392 Msa1170120:intron 65.0%
GGGTCCGTGGTCCCAGTTAC+TGG + chr7_4:63239105-63239124 Msa1170120:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 63234130 63241256 63234130 ID=Msa1170120;Name=Msa1170120
chr7_4 mRNA 63234130 63241256 63234130 ID=Msa1170120-mRNA-1;Parent=Msa1170120;Name=Msa1170120-mRNA-1;_AED=0.19;_eAED=0.21;_QI=0|0.75|0.66|1|1|1|9|288|430
chr7_4 exon 63234130 63234363 63234130 ID=Msa1170120-mRNA-1:exon:20180;Parent=Msa1170120-mRNA-1
chr7_4 exon 63238089 63238237 63238089 ID=Msa1170120-mRNA-1:exon:20181;Parent=Msa1170120-mRNA-1
chr7_4 exon 63238340 63238580 63238340 ID=Msa1170120-mRNA-1:exon:20182;Parent=Msa1170120-mRNA-1
chr7_4 exon 63238658 63238738 63238658 ID=Msa1170120-mRNA-1:exon:20183;Parent=Msa1170120-mRNA-1
chr7_4 exon 63239230 63239337 63239230 ID=Msa1170120-mRNA-1:exon:20184;Parent=Msa1170120-mRNA-1
chr7_4 exon 63239416 63239535 63239416 ID=Msa1170120-mRNA-1:exon:20185;Parent=Msa1170120-mRNA-1
chr7_4 exon 63239649 63239807 63239649 ID=Msa1170120-mRNA-1:exon:20186;Parent=Msa1170120-mRNA-1
chr7_4 exon 63240658 63240744 63240658 ID=Msa1170120-mRNA-1:exon:20187;Parent=Msa1170120-mRNA-1
chr7_4 exon 63240855 63241256 63240855 ID=Msa1170120-mRNA-1:exon:20188;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63234130 63234363 63234130 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63238089 63238237 63238089 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63238340 63238580 63238340 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63238658 63238738 63238658 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63239230 63239337 63239230 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63239416 63239535 63239416 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63239649 63239807 63239649 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63240658 63240744 63240658 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 CDS 63240855 63240968 63240855 ID=Msa1170120-mRNA-1:cds;Parent=Msa1170120-mRNA-1
chr7_4 three_prime_UTR 63240969 63241256 63240969 ID=Msa1170120-mRNA-1:three_prime_utr;Parent=Msa1170120-mRNA-1
Gene Sequence

>Msa1170120

ATGGCTATGGCGATTCAAAGCTTCGAGACATCGAAGGGTGTGAATGCGATTCAGAGCTTCGATAAGATGGGAATCAAAGACGATTTACTGCGTGGAATTTACCAATACGGTTTTGAGAAACCTTCATCCATTCAACAGCGTGCCGTTCTACCTATCATTCAGGGTCGTGACGTCATCGCTCAGTCTCAATCTGGAACCGGCAAGTCCTCCATGATTGCTCTCACTGTTTGCCAGCCTGCTCAGAGGTCCCTCACTCATCTGGTGAATATAAATTGTGACCATTCCATTGGGTCAGAAGAACCTATCAATAAATTTCATAAGTCAAGAGGGCAGCAACTCTCTAATTTTTCTCTGAATGCTAATGGAGCCTATGACCATGACAGGTTGCAGGCTTTAATTGTGTCTCCGACAAGGGAATTGGCCTCACAAACTGAAAATGTTATTTTGGCAATTGGGAGTTTCATTAATATACGAGCACATGCATGCATTGGAGGCAAAAGCGTTGGAGAAGACACAAGGAAACTTGAACACGGAGTTCATGTAGTGTCGGGGACTCCTGGCCGAGTCCTTGACATGATCAAAAGGAGAACATTGTGCACAAGAGCTATCAAGTTGCTTGTGCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCTCCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTACCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAGGCAATTTTATGTTGATGTTGAAAGGGAGGAATGGAAATTTGATACTCTTTGTGATCTTTATGATTATTTGACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTATCTCATCAATGCACGGTGATATGCCTCAAAGAGAAAGAGATGCAATTATGGATGAATTTCGTGCTGGAACAACTCGAGTATTGATAACGACTGATGTTTGGGCTCGTGGACTTGATGTTTCTCTAGTTATTAATTATGATCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGGGTGTTGCTATAAATTTTGTGAAAAGGGATGATATCAAGATCTTAAGAGACATCGAGCAATATTACAGTATTCAGATTCTTGATCTGCCGATGAATGTTGCTGATCTTATATAA
Protein sequence

>Msa1170120

MAMAIQSFETSKGVNAIQSFDKMGIKDDLLRGIYQYGFEKPSSIQQRAVLPIIQGRDVIAQSQSGTGKSSMIALTVCQPAQRSLTHLVNINCDHSIGSEEPINKFHKSRGQQLSNFSLNANGAYDHDRLQALIVSPTRELASQTENVILAIGSFINIRAHACIGGKSVGEDTRKLEHGVHVVSGTPGRVLDMIKRRTLCTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIRQFYVDVEREEWKFDTLCDLYDYLTITQAVIFCNTKRKVDWLTEKMRNNNFTISSMHGDMPQRERDAIMDEFRAGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKRDDIKILRDIEQYYSIQILDLPMNVADLI*