Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438010 | XP_003625615.2 | 99.219 | 256 | 2 | 0 | 1 | 256 | 1 | 256 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438010 | sp|Q8LEJ6|FLA11_ARATH | 63.776 | 196 | 65 | 3 | 10 | 204 | 7 | 197 | 1.01e-80 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438010 | G7L2R9 | 99.219 | 256 | 2 | 0 | 1 | 256 | 1 | 256 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081250 | Msa0438010 | 0.819818 | 9.511496e-53 | -8.615850e-47 |
| Msa0173780 | Msa0438010 | 0.813189 | 2.902467e-51 | -8.615850e-47 |
| Msa0199960 | Msa0438010 | 0.806420 | 8.297199e-50 | -8.615850e-47 |
| Msa0438010 | Msa0642950 | 0.825593 | 4.306446e-54 | -8.615850e-47 |
| Msa0438010 | Msa1222590 | 0.819139 | 1.358272e-52 | -8.615850e-47 |
| Msa0438010 | Msa1264570 | 0.809317 | 2.008761e-50 | -8.615850e-47 |
| Msa0438010 | Msa1412710 | 0.821048 | 4.965306e-53 | -8.615850e-47 |
| Msa0438010 | Msa1430750 | 0.811151 | 8.081534e-51 | -8.615850e-47 |
| Msa0438010 | Msa1436420 | 0.804250 | 2.363838e-49 | -8.615850e-47 |
| Msa0438010 | Msa1446110 | 0.816714 | 4.795404e-52 | -8.615850e-47 |
| Msa0280690 | Msa0438010 | 0.801574 | 8.443933e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438010 | MtrunA17_Chr7g0263981 | 98.828 | 256 | 3 | 0 | 1 | 256 | 1 | 256 | 0.0 | 507 |
| Msa0438010 | MtrunA17_Chr4g0029331 | 59.394 | 165 | 63 | 2 | 27 | 188 | 46 | 209 | 4.65e-59 | 188 |
| Msa0438010 | MtrunA17_Chr2g0326431 | 55.705 | 149 | 65 | 1 | 40 | 188 | 41 | 188 | 2.24e-51 | 168 |
| Msa0438010 | MtrunA17_Chr2g0325021 | 44.889 | 225 | 114 | 5 | 15 | 232 | 10 | 231 | 9.09e-50 | 164 |
| Msa0438010 | MtrunA17_Chr2g0284411 | 41.860 | 215 | 104 | 5 | 40 | 246 | 68 | 269 | 4.04e-46 | 155 |
| Msa0438010 | MtrunA17_Chr4g0029501 | 42.211 | 199 | 110 | 4 | 32 | 229 | 65 | 259 | 8.29e-46 | 155 |
| Msa0438010 | MtrunA17_Chr4g0029441 | 42.211 | 199 | 110 | 4 | 32 | 229 | 65 | 259 | 4.25e-45 | 153 |
| Msa0438010 | MtrunA17_Chr2g0284451 | 39.754 | 244 | 129 | 6 | 26 | 256 | 56 | 294 | 6.62e-45 | 152 |
| Msa0438010 | MtrunA17_Chr8g0379621 | 47.929 | 169 | 76 | 5 | 29 | 187 | 76 | 242 | 4.96e-44 | 151 |
| Msa0438010 | MtrunA17_Chr2g0326421 | 40.090 | 222 | 128 | 4 | 36 | 255 | 65 | 283 | 5.05e-44 | 150 |
| Msa0438010 | MtrunA17_Chr8g0379631 | 49.367 | 158 | 73 | 4 | 35 | 187 | 87 | 242 | 7.85e-44 | 150 |
| Msa0438010 | MtrunA17_Chr4g0026611 | 40.969 | 227 | 125 | 5 | 32 | 250 | 69 | 294 | 9.03e-44 | 149 |
| Msa0438010 | MtrunA17_Chr2g0284431 | 40.639 | 219 | 109 | 5 | 40 | 250 | 89 | 294 | 1.14e-43 | 149 |
| Msa0438010 | MtrunA17_Chr8g0379611 | 38.991 | 218 | 128 | 4 | 29 | 245 | 66 | 279 | 3.80e-43 | 149 |
| Msa0438010 | MtrunA17_Chr4g0029431 | 49.032 | 155 | 77 | 2 | 36 | 189 | 63 | 216 | 7.54e-40 | 139 |
| Msa0438010 | MtrunA17_Chr2g0326411 | 45.205 | 146 | 78 | 2 | 40 | 184 | 69 | 213 | 5.27e-37 | 132 |
| Msa0438010 | MtrunA17_Chr5g0448001 | 40.331 | 181 | 94 | 6 | 39 | 215 | 47 | 217 | 6.67e-33 | 120 |
| Msa0438010 | MtrunA17_Chr7g0246041 | 35.632 | 174 | 105 | 4 | 32 | 203 | 176 | 344 | 1.58e-23 | 98.2 |
| Msa0438010 | MtrunA17_Chr2g0296571 | 28.761 | 226 | 145 | 6 | 35 | 249 | 190 | 410 | 2.41e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438010 | AT5G03170.1 | 63.776 | 196 | 65 | 3 | 10 | 204 | 7 | 197 | 1.03e-81 | 245 |
| Msa0438010 | AT5G60490.1 | 62.416 | 149 | 56 | 0 | 40 | 188 | 39 | 187 | 2.82e-64 | 201 |
| Msa0438010 | AT1G03870.1 | 45.789 | 190 | 101 | 2 | 39 | 228 | 38 | 225 | 3.52e-52 | 170 |
| Msa0438010 | AT2G20520.1 | 51.366 | 183 | 81 | 4 | 25 | 202 | 21 | 200 | 6.73e-52 | 169 |
| Msa0438010 | AT5G44130.1 | 43.590 | 195 | 109 | 1 | 39 | 232 | 35 | 229 | 1.07e-51 | 169 |
| Msa0438010 | AT2G04780.1 | 38.562 | 153 | 88 | 2 | 39 | 189 | 45 | 193 | 4.76e-27 | 105 |
| Msa0438010 | AT2G04780.2 | 38.562 | 153 | 88 | 2 | 39 | 189 | 45 | 193 | 4.76e-27 | 105 |
| Msa0438010 | AT3G60900.1 | 31.452 | 248 | 141 | 8 | 32 | 255 | 180 | 422 | 6.69e-22 | 94.4 |
| Msa0438010 | AT2G45470.1 | 32.661 | 248 | 133 | 8 | 32 | 253 | 180 | 419 | 3.11e-19 | 86.7 |
| Msa0438010 | AT3G46550.1 | 31.818 | 176 | 110 | 6 | 30 | 198 | 198 | 370 | 3.39e-19 | 86.7 |
| Msa0438010 | AT4G12730.1 | 26.639 | 244 | 166 | 8 | 18 | 256 | 167 | 402 | 5.21e-12 | 65.5 |
Find 43 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTAATGTTACTACTTC+TGG | 0.193003 | 3_3:-2019516 | Msa0438010:CDS |
| AAGACTTTGGTTATGTTTAA+TGG | 0.195747 | 3_3:+2019828 | None:intergenic |
| CTGTTGGTGCAAAGATTGTT+AGG | 0.345141 | 3_3:+2019709 | None:intergenic |
| CAATCAGCTTGCAGTGTATC+AGG | 0.355039 | 3_3:-2019430 | Msa0438010:CDS |
| CCAGAAGTAGTAACATTAAG+AGG | 0.370257 | 3_3:+2019516 | None:intergenic |
| TTGAATGGCTACATAGTTAA+TGG | 0.376862 | 3_3:-2019249 | Msa0438010:CDS |
| ATGTTGTTGTGTCTTGTTTG+TGG | 0.393317 | 3_3:-2019197 | Msa0438010:CDS |
| TTCTCTGGCTTAGTCGGTGC+AGG | 0.396164 | 3_3:+2019342 | None:intergenic |
| TGATCAAGTGCTTCTTCCTA+TGG | 0.415143 | 3_3:-2019406 | Msa0438010:CDS |
| TCGAGTGCTGTTGGTTTGAA+TGG | 0.429163 | 3_3:-2019264 | Msa0438010:CDS |
| AATCAAGTTAATGTAACAAC+TGG | 0.448742 | 3_3:-2019492 | Msa0438010:CDS |
| GAAACTGTAGAAGTTGAAGT+TGG | 0.451256 | 3_3:+2019631 | None:intergenic |
| TGATGCTCCGAAAGGGTCTT+CGG | 0.456324 | 3_3:-2019304 | Msa0438010:CDS |
| GGACTATCCGAAGACCCTTT+CGG | 0.481438 | 3_3:+2019297 | None:intergenic |
| GATGAATGTTGTGAATTGTC+CGG | 0.481489 | 3_3:+2019797 | None:intergenic |
| AACCCTCTACACACACAAGC+TGG | 0.488371 | 3_3:-2019561 | Msa0438010:CDS |
| GCATTCTCAAGCCTAAAATC+AGG | 0.498236 | 3_3:-2019681 | Msa0438010:CDS |
| TCCGACCGCTGCGCCTGCGG+AGG | 0.501128 | 3_3:-2019367 | Msa0438010:CDS |
| CAACTCAACAACTCAAATCA+AGG | 0.503271 | 3_3:-2019732 | Msa0438010:CDS |
| AGGTCCGACCGCTGCGCCTG+CGG | 0.504633 | 3_3:-2019370 | Msa0438010:CDS |
| CGGGCTTCTGATGCTCCGAA+AGG | 0.506709 | 3_3:-2019312 | Msa0438010:CDS |
| GATGGTGCTGGTGATATAGC+TGG | 0.507084 | 3_3:+2019855 | None:intergenic |
| GCTATATCACCAGCACCATC+AGG | 0.510604 | 3_3:-2019852 | Msa0438010:CDS |
| GTCGGTGCAGGAGCCTCCGC+AGG | 0.511376 | 3_3:+2019354 | None:intergenic |
| GTTATGTTTAATGGTCCTGA+TGG | 0.521667 | 3_3:+2019837 | None:intergenic |
| CAAGCTGGAAACAGTGATGA+TGG | 0.526045 | 3_3:-2019546 | Msa0438010:CDS |
| TTCCAGCTTGTGTGTGTAGA+GGG | 0.528322 | 3_3:+2019559 | None:intergenic |
| CTAAGCCAGAGAAAAGTGTC+CGG | 0.530199 | 3_3:-2019332 | Msa0438010:CDS |
| GGGCTTCTGATGCTCCGAAA+GGG | 0.534306 | 3_3:-2019311 | Msa0438010:CDS |
| GCCTCCGCAGGCGCAGCGGT+CGG | 0.537525 | 3_3:+2019366 | None:intergenic |
| CTTTCGGAGCATCAGAAGCC+CGG | 0.539752 | 3_3:+2019313 | None:intergenic |
| GAAAGGGTCTTCGGATAGTC+CGG | 0.540038 | 3_3:-2019295 | Msa0438010:CDS |
| GCTGATGATTCGAGTGCTGT+TGG | 0.549087 | 3_3:-2019273 | Msa0438010:CDS |
| TAAGCCAGAGAAAAGTGTCC+GGG | 0.555324 | 3_3:-2019331 | Msa0438010:CDS |
| TTTCCAGCTTGTGTGTGTAG+AGG | 0.556847 | 3_3:+2019558 | None:intergenic |
| AGGAGCCTCCGCAGGCGCAG+CGG | 0.574666 | 3_3:+2019362 | None:intergenic |
| TTTAATGGTCCTGATGGTGC+TGG | 0.578425 | 3_3:+2019843 | None:intergenic |
| CTTGAGAATGCATTATCTGT+TGG | 0.578528 | 3_3:+2019693 | None:intergenic |
| CAAACAAGACACAACAACAT+TGG | 0.585876 | 3_3:+2019200 | None:intergenic |
| AAATTGAATAGCTTAGCCAT+TGG | 0.595840 | 3_3:+2019942 | None:intergenic |
| TGTGACATTGTGTAAAGTGT+TGG | 0.619737 | 3_3:+2019600 | None:intergenic |
| ACAGCACTCGAATCATCAGC+CGG | 0.625967 | 3_3:+2019276 | None:intergenic |
| GAGTTGCGAATTGATTCGAT+CGG | 0.631407 | 3_3:+2019749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGCATTGAGAAAAAATAG+AGG | + | chr3_3:2019218-2019237 | None:intergenic | 25.0% |
| ! | AAGACTTTGGTTATGTTTAA+TGG | + | chr3_3:2019305-2019324 | None:intergenic | 25.0% |
| ! | AATCAAGTTAATGTAACAAC+TGG | - | chr3_3:2019638-2019657 | Msa0438010:CDS | 25.0% |
| ! | AATGCATTGAGAAAAAATAG+AGG | + | chr3_3:2019218-2019237 | None:intergenic | 25.0% |
| ! | AAGACTTTGGTTATGTTTAA+TGG | + | chr3_3:2019305-2019324 | None:intergenic | 25.0% |
| ! | AATCAAGTTAATGTAACAAC+TGG | - | chr3_3:2019638-2019657 | Msa0438010:CDS | 25.0% |
| ! | AGTTTAGTGTTCCTGATTTT+AGG | + | chr3_3:2019463-2019482 | None:intergenic | 30.0% |
| TTGAATGGCTACATAGTTAA+TGG | - | chr3_3:2019881-2019900 | Msa0438010:CDS | 30.0% | |
| ! | AGTTTAGTGTTCCTGATTTT+AGG | + | chr3_3:2019463-2019482 | None:intergenic | 30.0% |
| TTGAATGGCTACATAGTTAA+TGG | - | chr3_3:2019881-2019900 | Msa0438010:CDS | 30.0% | |
| GTTATGTTTAATGGTCCTGA+TGG | + | chr3_3:2019296-2019315 | None:intergenic | 35.0% | |
| ACCAAAGTCTTAGAAAAAGC+CGG | - | chr3_3:2019314-2019333 | Msa0438010:CDS | 35.0% | |
| GATGAATGTTGTGAATTGTC+CGG | + | chr3_3:2019336-2019355 | None:intergenic | 35.0% | |
| CAACTCAACAACTCAAATCA+AGG | - | chr3_3:2019398-2019417 | Msa0438010:CDS | 35.0% | |
| CTTGAGAATGCATTATCTGT+TGG | + | chr3_3:2019440-2019459 | None:intergenic | 35.0% | |
| GAAACTGTAGAAGTTGAAGT+TGG | + | chr3_3:2019502-2019521 | None:intergenic | 35.0% | |
| TGTGACATTGTGTAAAGTGT+TGG | + | chr3_3:2019533-2019552 | None:intergenic | 35.0% | |
| CCAGAAGTAGTAACATTAAG+AGG | + | chr3_3:2019617-2019636 | None:intergenic | 35.0% | |
| CCTCTTAATGTTACTACTTC+TGG | - | chr3_3:2019614-2019633 | Msa0438010:CDS | 35.0% | |
| CAAACAAGACACAACAACAT+TGG | + | chr3_3:2019933-2019952 | None:intergenic | 35.0% | |
| !! | ATGTTGTTGTGTCTTGTTTG+TGG | - | chr3_3:2019933-2019952 | Msa0438010:CDS | 35.0% |
| GTTATGTTTAATGGTCCTGA+TGG | + | chr3_3:2019296-2019315 | None:intergenic | 35.0% | |
| ACCAAAGTCTTAGAAAAAGC+CGG | - | chr3_3:2019314-2019333 | Msa0438010:CDS | 35.0% | |
| GATGAATGTTGTGAATTGTC+CGG | + | chr3_3:2019336-2019355 | None:intergenic | 35.0% | |
| CAACTCAACAACTCAAATCA+AGG | - | chr3_3:2019398-2019417 | Msa0438010:CDS | 35.0% | |
| CTTGAGAATGCATTATCTGT+TGG | + | chr3_3:2019440-2019459 | None:intergenic | 35.0% | |
| GAAACTGTAGAAGTTGAAGT+TGG | + | chr3_3:2019502-2019521 | None:intergenic | 35.0% | |
| TGTGACATTGTGTAAAGTGT+TGG | + | chr3_3:2019533-2019552 | None:intergenic | 35.0% | |
| CCAGAAGTAGTAACATTAAG+AGG | + | chr3_3:2019617-2019636 | None:intergenic | 35.0% | |
| CCTCTTAATGTTACTACTTC+TGG | - | chr3_3:2019614-2019633 | Msa0438010:CDS | 35.0% | |
| CAAACAAGACACAACAACAT+TGG | + | chr3_3:2019933-2019952 | None:intergenic | 35.0% | |
| !! | ATGTTGTTGTGTCTTGTTTG+TGG | - | chr3_3:2019933-2019952 | Msa0438010:CDS | 35.0% |
| !!! | TCCGGCTTTTTCTAAGACTT+TGG | + | chr3_3:2019318-2019337 | None:intergenic | 40.0% |
| !! | GAGTTGCGAATTGATTCGAT+CGG | + | chr3_3:2019384-2019403 | None:intergenic | 40.0% |
| CTGTTGGTGCAAAGATTGTT+AGG | + | chr3_3:2019424-2019443 | None:intergenic | 40.0% | |
| GCATTCTCAAGCCTAAAATC+AGG | - | chr3_3:2019449-2019468 | Msa0438010:CDS | 40.0% | |
| TGATCAAGTGCTTCTTCCTA+TGG | - | chr3_3:2019724-2019743 | Msa0438010:CDS | 40.0% | |
| ! | CTTCTTCCTATGGCACTTTT+TGG | - | chr3_3:2019734-2019753 | Msa0438010:CDS | 40.0% |
| !! | ACACTTTTCTCTGGCTTAGT+CGG | + | chr3_3:2019797-2019816 | None:intergenic | 40.0% |
| !!! | TCCGGCTTTTTCTAAGACTT+TGG | + | chr3_3:2019318-2019337 | None:intergenic | 40.0% |
| !! | GAGTTGCGAATTGATTCGAT+CGG | + | chr3_3:2019384-2019403 | None:intergenic | 40.0% |
| CTGTTGGTGCAAAGATTGTT+AGG | + | chr3_3:2019424-2019443 | None:intergenic | 40.0% | |
| GCATTCTCAAGCCTAAAATC+AGG | - | chr3_3:2019449-2019468 | Msa0438010:CDS | 40.0% | |
| TGATCAAGTGCTTCTTCCTA+TGG | - | chr3_3:2019724-2019743 | Msa0438010:CDS | 40.0% | |
| ! | CTTCTTCCTATGGCACTTTT+TGG | - | chr3_3:2019734-2019753 | Msa0438010:CDS | 40.0% |
| !! | ACACTTTTCTCTGGCTTAGT+CGG | + | chr3_3:2019797-2019816 | None:intergenic | 40.0% |
| ! | TTTAATGGTCCTGATGGTGC+TGG | + | chr3_3:2019290-2019309 | None:intergenic | 45.0% |
| TTCCAGCTTGTGTGTGTAGA+GGG | + | chr3_3:2019574-2019593 | None:intergenic | 45.0% | |
| TTTCCAGCTTGTGTGTGTAG+AGG | + | chr3_3:2019575-2019594 | None:intergenic | 45.0% | |
| CAAGCTGGAAACAGTGATGA+TGG | - | chr3_3:2019584-2019603 | Msa0438010:CDS | 45.0% | |
| CAATCAGCTTGCAGTGTATC+AGG | - | chr3_3:2019700-2019719 | Msa0438010:CDS | 45.0% | |
| !! | CCTTGTCCAAAAAGTGCCAT+AGG | + | chr3_3:2019743-2019762 | None:intergenic | 45.0% |
| !! | CCTATGGCACTTTTTGGACA+AGG | - | chr3_3:2019740-2019759 | Msa0438010:CDS | 45.0% |
| !! | CTAAGCCAGAGAAAAGTGTC+CGG | - | chr3_3:2019798-2019817 | Msa0438010:CDS | 45.0% |
| !! | TAAGCCAGAGAAAAGTGTCC+GGG | - | chr3_3:2019799-2019818 | Msa0438010:CDS | 45.0% |
| !! | TCGAGTGCTGTTGGTTTGAA+TGG | - | chr3_3:2019866-2019885 | Msa0438010:CDS | 45.0% |
| ! | TTTAATGGTCCTGATGGTGC+TGG | + | chr3_3:2019290-2019309 | None:intergenic | 45.0% |
| TTCCAGCTTGTGTGTGTAGA+GGG | + | chr3_3:2019574-2019593 | None:intergenic | 45.0% | |
| TTTCCAGCTTGTGTGTGTAG+AGG | + | chr3_3:2019575-2019594 | None:intergenic | 45.0% | |
| CAAGCTGGAAACAGTGATGA+TGG | - | chr3_3:2019584-2019603 | Msa0438010:CDS | 45.0% | |
| CAATCAGCTTGCAGTGTATC+AGG | - | chr3_3:2019700-2019719 | Msa0438010:CDS | 45.0% | |
| !! | CCTTGTCCAAAAAGTGCCAT+AGG | + | chr3_3:2019743-2019762 | None:intergenic | 45.0% |
| !! | CCTATGGCACTTTTTGGACA+AGG | - | chr3_3:2019740-2019759 | Msa0438010:CDS | 45.0% |
| !! | CTAAGCCAGAGAAAAGTGTC+CGG | - | chr3_3:2019798-2019817 | Msa0438010:CDS | 45.0% |
| !! | TAAGCCAGAGAAAAGTGTCC+GGG | - | chr3_3:2019799-2019818 | Msa0438010:CDS | 45.0% |
| !! | TCGAGTGCTGTTGGTTTGAA+TGG | - | chr3_3:2019866-2019885 | Msa0438010:CDS | 45.0% |
| !! | GATGGTGCTGGTGATATAGC+TGG | + | chr3_3:2019278-2019297 | None:intergenic | 50.0% |
| GCTATATCACCAGCACCATC+AGG | - | chr3_3:2019278-2019297 | Msa0438010:CDS | 50.0% | |
| AACCCTCTACACACACAAGC+TGG | - | chr3_3:2019569-2019588 | Msa0438010:CDS | 50.0% | |
| TGATGCTCCGAAAGGGTCTT+CGG | - | chr3_3:2019826-2019845 | Msa0438010:CDS | 50.0% | |
| GGACTATCCGAAGACCCTTT+CGG | + | chr3_3:2019836-2019855 | None:intergenic | 50.0% | |
| GAAAGGGTCTTCGGATAGTC+CGG | - | chr3_3:2019835-2019854 | Msa0438010:CDS | 50.0% | |
| ACAGCACTCGAATCATCAGC+CGG | + | chr3_3:2019857-2019876 | None:intergenic | 50.0% | |
| ! | GCTGATGATTCGAGTGCTGT+TGG | - | chr3_3:2019857-2019876 | Msa0438010:CDS | 50.0% |
| !! | GATGGTGCTGGTGATATAGC+TGG | + | chr3_3:2019278-2019297 | None:intergenic | 50.0% |
| GCTATATCACCAGCACCATC+AGG | - | chr3_3:2019278-2019297 | Msa0438010:CDS | 50.0% | |
| AACCCTCTACACACACAAGC+TGG | - | chr3_3:2019569-2019588 | Msa0438010:CDS | 50.0% | |
| TGATGCTCCGAAAGGGTCTT+CGG | - | chr3_3:2019826-2019845 | Msa0438010:CDS | 50.0% | |
| GGACTATCCGAAGACCCTTT+CGG | + | chr3_3:2019836-2019855 | None:intergenic | 50.0% | |
| GAAAGGGTCTTCGGATAGTC+CGG | - | chr3_3:2019835-2019854 | Msa0438010:CDS | 50.0% | |
| ACAGCACTCGAATCATCAGC+CGG | + | chr3_3:2019857-2019876 | None:intergenic | 50.0% | |
| ! | GCTGATGATTCGAGTGCTGT+TGG | - | chr3_3:2019857-2019876 | Msa0438010:CDS | 50.0% |
| ! | TTCTCTGGCTTAGTCGGTGC+AGG | + | chr3_3:2019791-2019810 | None:intergenic | 55.0% |
| ! | GAAGCCCGGACACTTTTCTC+TGG | + | chr3_3:2019806-2019825 | None:intergenic | 55.0% |
| ! | CTTTCGGAGCATCAGAAGCC+CGG | + | chr3_3:2019820-2019839 | None:intergenic | 55.0% |
| GGGCTTCTGATGCTCCGAAA+GGG | - | chr3_3:2019819-2019838 | Msa0438010:CDS | 55.0% | |
| ! | TTCTCTGGCTTAGTCGGTGC+AGG | + | chr3_3:2019791-2019810 | None:intergenic | 55.0% |
| ! | GAAGCCCGGACACTTTTCTC+TGG | + | chr3_3:2019806-2019825 | None:intergenic | 55.0% |
| ! | CTTTCGGAGCATCAGAAGCC+CGG | + | chr3_3:2019820-2019839 | None:intergenic | 55.0% |
| GGGCTTCTGATGCTCCGAAA+GGG | - | chr3_3:2019819-2019838 | Msa0438010:CDS | 55.0% | |
| CGGGCTTCTGATGCTCCGAA+AGG | - | chr3_3:2019818-2019837 | Msa0438010:CDS | 60.0% | |
| CGGGCTTCTGATGCTCCGAA+AGG | - | chr3_3:2019818-2019837 | Msa0438010:CDS | 60.0% | |
| AGGTCCGACCGCTGCGCCTG+CGG | - | chr3_3:2019760-2019779 | Msa0438010:CDS | 75.0% | |
| AGGAGCCTCCGCAGGCGCAG+CGG | + | chr3_3:2019771-2019790 | None:intergenic | 75.0% | |
| GTCGGTGCAGGAGCCTCCGC+AGG | + | chr3_3:2019779-2019798 | None:intergenic | 75.0% | |
| AGGTCCGACCGCTGCGCCTG+CGG | - | chr3_3:2019760-2019779 | Msa0438010:CDS | 75.0% | |
| AGGAGCCTCCGCAGGCGCAG+CGG | + | chr3_3:2019771-2019790 | None:intergenic | 75.0% | |
| GTCGGTGCAGGAGCCTCCGC+AGG | + | chr3_3:2019779-2019798 | None:intergenic | 75.0% | |
| ! | TCCGACCGCTGCGCCTGCGG+AGG | - | chr3_3:2019763-2019782 | Msa0438010:CDS | 80.0% |
| ! | GCCTCCGCAGGCGCAGCGGT+CGG | + | chr3_3:2019767-2019786 | None:intergenic | 80.0% |
| ! | TCCGACCGCTGCGCCTGCGG+AGG | - | chr3_3:2019763-2019782 | Msa0438010:CDS | 80.0% |
| ! | GCCTCCGCAGGCGCAGCGGT+CGG | + | chr3_3:2019767-2019786 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 2019191 | 2019961 | 2019191 | ID=Msa0438010;Name=Msa0438010 |
| chr3_3 | mRNA | 2019191 | 2019961 | 2019191 | ID=Msa0438010-mRNA-1;Parent=Msa0438010;Name=Msa0438010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|256 |
| chr3_3 | exon | 2019191 | 2019961 | 2019191 | ID=Msa0438010-mRNA-1:exon:464;Parent=Msa0438010-mRNA-1 |
| chr3_3 | CDS | 2019191 | 2019961 | 2019191 | ID=Msa0438010-mRNA-1:cds;Parent=Msa0438010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
