AlfalfaGEDB | Msa0642950

M. sativa cultivar zhongmu-4 / Msa0642950

KEGG: K15285
GO: GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505
PFAM: PF03151.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642950	XP_024636166.1	81.662	349	31	1	1	316	1	349	0.0	543

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642950	sp\|F4IHS9\|UXT1_ARATH	63.037	349	89	6	1	316	1	342	1.52e-135	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040660	Msa0642950	0.817611	3.015266e-52	-8.615850e-47
Msa0081250	Msa0642950	0.814558	1.449589e-51	-8.615850e-47
Msa0173780	Msa0642950	0.803450	3.466666e-49	-8.615850e-47
Msa0193850	Msa0642950	0.841588	4.337405e-58	-8.615850e-47
Msa0199960	Msa0642950	0.862093	6.470106e-64	-8.615850e-47
Msa0235710	Msa0642950	0.825785	3.878973e-54	-8.615850e-47
Msa0242490	Msa0642950	0.857756	1.314246e-62	-8.615850e-47
Msa0243600	Msa0642950	0.838370	2.993746e-57	-8.615850e-47
Msa0274440	Msa0642950	0.836642	8.300593e-57	-8.615850e-47
Msa0280690	Msa0642950	0.849657	2.809899e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642950	MtrunA17_Chr4g0028931	81.662	349	31	1	1	316	1	349	0.0	543
Msa0642950	MtrunA17_Chr2g0326791	70.115	348	69	3	1	314	1	347	5.88e-163	457
Msa0642950	MtrunA17_Chr6g0467391	69.524	315	62	2	1	281	1	315	1.87e-143	407
Msa0642950	MtrunA17_Chr6g0467371	69.524	315	62	2	1	281	1	315	1.87e-143	407
Msa0642950	MtrunA17_Chr3g0128951	54.885	348	121	4	1	313	1	347	1.60e-109	322
Msa0642950	MtrunA17_Chr3g0128961	72.561	164	45	0	1	164	1	164	7.23e-66	211
Msa0642950	MtrunA17_Chr3g0128961	57.282	103	43	1	194	296	249	350	2.89e-33	125
Msa0642950	MtrunA17_Chr1g0157501	32.919	322	173	3	13	291	14	335	1.46e-36	134
Msa0642950	MtrunA17_Chr5g0393381	35.216	301	157	4	6	269	9	308	2.63e-35	130
Msa0642950	MtrunA17_Chr1g0201531	29.693	293	172	3	13	271	16	308	7.70e-33	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642950	AT2G28315.1	63.037	349	89	6	1	316	1	342	1.54e-136	390
Msa0642950	AT2G28315.2	67.763	304	65	3	1	271	1	304	5.82e-133	380
Msa0642950	AT1G06890.2	54.930	355	117	6	1	313	1	354	4.78e-109	321
Msa0642950	AT1G06890.1	54.930	355	117	6	1	313	1	354	4.78e-109	321
Msa0642950	AT1G06890.3	57.143	329	107	4	1	296	1	328	3.70e-108	319
Msa0642950	AT1G06890.4	57.143	329	107	4	1	296	1	328	5.14e-108	318
Msa0642950	AT2G30460.1	54.674	353	117	6	1	313	1	350	1.28e-107	318
Msa0642950	AT2G30460.2	54.674	353	117	6	1	313	1	350	1.28e-107	318
Msa0642950	AT2G30460.3	52.396	313	106	6	41	313	20	329	1.23e-95	286
Msa0642950	AT2G30460.6	52.396	313	106	6	41	313	20	329	1.23e-95	286

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Find 75 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGCTGCTTGGAA+TGG	0.498395	4_3:-45288643	None:intergenic
AAAATTACCTGAGACGACAA+AGG	0.636716	4_3:-45289463	None:intergenic
AAACATGGATGATCAGGAAA+AGG	0.505311	4_3:+45289600	Msa0642950:CDS
AAAGCCTTAATGAGCAATCT+TGG	0.364932	4_3:+45287206	Msa0642950:CDS
AAATATATTGGTGGCAAAGA+TGG	0.379539	4_3:+45287100	Msa0642950:exon
AAGAAGCCACAGAAAGGAAT+AGG	0.334698	4_3:-45287160	None:intergenic
AATATATTGGTGGCAAAGAT+GGG	0.455967	4_3:+45287101	Msa0642950:exon
AATTTGATTTACACTAAACA+AGG	0.586605	4_3:-45289741	None:intergenic
ACATGGACATTAAGATTTCA+TGG	0.332488	4_3:-45286475	None:intergenic
ACATTACTTACCAAGACTAG+AGG	0.601567	4_3:-45288730	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAGATGTTAAAATCATG+AGG	-	chr4_3:45286414-45286433	None:intergenic	30.0%
ACATGGACATTAAGATTTCA+TGG	-	chr4_3:45286478-45286497	None:intergenic	30.0%
TTGCTACCAAAGTCAAATTA+AGG	-	chr4_3:45286849-45286868	None:intergenic	30.0%
AGAGATGTCAAAAACTCAAT+TGG	+	chr4_3:45287124-45287143	Msa0642950:CDS	30.0%
GAGATGTCAAAAACTCAATT+GGG	+	chr4_3:45287125-45287144	Msa0642950:CDS	30.0%
AGATGTCAAAAACTCAATTG+GGG	+	chr4_3:45287126-45287145	Msa0642950:CDS	30.0%
CAAATAAAATCTTGACCCAA+AGG	+	chr4_3:45287883-45287902	Msa0642950:intron	30.0%
ATTGAAAATAAGTGTGACCA+TGG	+	chr4_3:45288108-45288127	Msa0642950:intron	30.0%
TCTCTATTCTTCTTACTTGT+TGG	+	chr4_3:45288198-45288217	Msa0642950:CDS	30.0%
ATACTATTTGTGAGAGCTTA+TGG	+	chr4_3:45288406-45288425	Msa0642950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	45286317	45289946	45286317	ID=Msa0642950;Name=Msa0642950
chr4_3	mRNA	45286317	45289946	45286317	ID=Msa0642950-mRNA-1;Parent=Msa0642950;Name=Msa0642950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=456\|0.71\|0.62\|1\|0.57\|0.37\|8\|280\|316
chr4_3	exon	45286317	45286739	45286317	ID=Msa0642950-mRNA-1:exon:10455;Parent=Msa0642950-mRNA-1
chr4_3	exon	45287086	45287239	45287086	ID=Msa0642950-mRNA-1:exon:10456;Parent=Msa0642950-mRNA-1
chr4_3	exon	45287351	45287535	45287351	ID=Msa0642950-mRNA-1:exon:10457;Parent=Msa0642950-mRNA-1
chr4_3	exon	45288009	45288076	45288009	ID=Msa0642950-mRNA-1:exon:10458;Parent=Msa0642950-mRNA-1
chr4_3	exon	45288182	45288300	45288182	ID=Msa0642950-mRNA-1:exon:10459;Parent=Msa0642950-mRNA-1
chr4_3	exon	45288637	45288741	45288637	ID=Msa0642950-mRNA-1:exon:10460;Parent=Msa0642950-mRNA-1
chr4_3	exon	45289233	45289477	45289233	ID=Msa0642950-mRNA-1:exon:10461;Parent=Msa0642950-mRNA-1
chr4_3	exon	45289559	45289946	45289559	ID=Msa0642950-mRNA-1:exon:10462;Parent=Msa0642950-mRNA-1
chr4_3	five_prime_UTR	45286317	45286739	45286317	ID=Msa0642950-mRNA-1:five_prime_utr;Parent=Msa0642950-mRNA-1
chr4_3	five_prime_UTR	45287086	45287118	45287086	ID=Msa0642950-mRNA-1:five_prime_utr;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45287119	45287239	45287119	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45287351	45287535	45287351	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45288009	45288076	45288009	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45288182	45288300	45288182	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45288637	45288741	45288637	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45289233	45289477	45289233	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	CDS	45289559	45289666	45289559	ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1
chr4_3	three_prime_UTR	45289667	45289946	45289667	ID=Msa0642950-mRNA-1:three_prime_utr;Parent=Msa0642950-mRNA-1

Gene Sequence

>Msa0642950

ATGGGAGAGATGTCAAAAACTCAATTGGGGGTCATTGGTGCCCTATTCCTTTCTGTGGCTTCTTCTGTCTCCATTGTCATATGCAACAAAGCCTTAATGAGCAATCTTGGTTTCCCATTCGCCACAACACTTACAAGTTGGCATTTGATGGTTACTTTTTGCACCCTTCATGTGGCTCTACGTTTCAATCTGTTTGAGGCCAAACCTGTTGACATGAAGACTGTCATGCTTTTTGGCATTCTAAATGGTGTCTCCATTGGATTTCTCAACTTGAGCCTTGGCTTCAATTCCATTGGATTCTATCAGATGACAAAACTTGCAATCATACCATTCACAGTTATGCTAGAAACTCTTTTCCTAAAGAAGCAGTTCAGCCGGAATATTAAACTCTCTCTATTCTTCTTACTTGTTGGAGTTGGCATTGCTTCTATCACAGACCTTCAGCTCAATTTTGTTGGAACCATTCTTTCACTTCTAGCTATCATAACAACATTCTGCTCCATTCCAAGCAGCAATTCTTTTTGTTTCAGGCCCTCTTGTGGATCGGATGCTAACCAAGCAAAATGTCTTTGCATACAAATATTCTCCTCTAGTCTTGCTGTTTCTGTGAACTTTAGCACATTCCTAGTAATAGGAAAAACATCTCCAGTAACATATCAAGTGTTGGGCCATCTCAAGACTTGTCTTGTTCTAGGATTTGGCTACACATTGCTCCATGACCCTTTCACTGAAAGGAACATTATTGGAATACTAGTAGCAGTTTTTGGAATGGGTTTGTATTCCTATTTCTGCACTCAAGAGAACAAAAAGAAACTTGTAGTCGATCCTCCTTTGTCGTCTCAGGTTAAAGATAAGGATATAAATTCACCACTTTTGAATGGTAAAAACATGGATGATCAGGAAAAGGAGAGTCATGAGTCTAAGAAATCAAACAAGGACTCTATTGTTTAA

Protein sequence

>Msa0642950

MGEMSKTQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHVALRFNLFEAKPVDMKTVMLFGILNGVSIGFLNLSLGFNSIGFYQMTKLAIIPFTVMLETLFLKKQFSRNIKLSLFFLLVGVGIASITDLQLNFVGTILSLLAIITTFCSIPSSNSFCFRPSCGSDANQAKCLCIQIFSSSLAVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLGFGYTLLHDPFTERNIIGILVAVFGMGLYSYFCTQENKKKLVVDPPLSSQVKDKDINSPLLNGKNMDDQEKESHESKKSNKDSIV*