Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642950 | XP_024636166.1 | 81.662 | 349 | 31 | 1 | 1 | 316 | 1 | 349 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642950 | sp|F4IHS9|UXT1_ARATH | 63.037 | 349 | 89 | 6 | 1 | 316 | 1 | 342 | 1.52e-135 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0642950 | 0.817611 | 3.015266e-52 | -8.615850e-47 |
| Msa0081250 | Msa0642950 | 0.814558 | 1.449589e-51 | -8.615850e-47 |
| Msa0629600 | Msa0642950 | 0.842612 | 2.324764e-58 | -8.615850e-47 |
| Msa0642950 | Msa0667370 | 0.847033 | 1.493332e-59 | -8.615850e-47 |
| Msa0642950 | Msa0688820 | 0.802844 | 4.627094e-49 | -8.615850e-47 |
| Msa0642950 | Msa0968350 | 0.838324 | 3.077673e-57 | -8.615850e-47 |
| Msa0642950 | Msa1037550 | 0.882800 | 7.685612e-71 | -8.615850e-47 |
| Msa0642950 | Msa1078930 | 0.830621 | 2.649555e-55 | -8.615850e-47 |
| Msa0642950 | Msa1123930 | 0.848403 | 6.268788e-60 | -8.615850e-47 |
| Msa0642950 | Msa1130430 | 0.882835 | 7.460897e-71 | -8.615850e-47 |
| Msa0642950 | Msa1169230 | 0.820621 | 6.227392e-53 | -8.615850e-47 |
| Msa0642950 | Msa1222590 | 0.865707 | 4.856236e-65 | -8.615850e-47 |
| Msa0642950 | Msa1264570 | 0.867913 | 9.637600e-66 | -8.615850e-47 |
| Msa0642950 | Msa1327650 | 0.823275 | 1.512019e-53 | -8.615850e-47 |
| Msa0642950 | Msa1340700 | 0.876075 | 1.862997e-68 | -8.615850e-47 |
| Msa0642950 | Msa1412710 | 0.815674 | 8.193100e-52 | -8.615850e-47 |
| Msa0642950 | Msa1426070 | 0.837286 | 5.686718e-57 | -8.615850e-47 |
| Msa0642950 | Msa1430750 | 0.861723 | 8.393123e-64 | -8.615850e-47 |
| Msa0642950 | Msa1436420 | 0.864867 | 8.924055e-65 | -8.615850e-47 |
| Msa0642950 | Msa1446110 | 0.872982 | 2.092690e-67 | -8.615850e-47 |
| Msa0173780 | Msa0642950 | 0.803450 | 3.466666e-49 | -8.615850e-47 |
| Msa0193850 | Msa0642950 | 0.841588 | 4.337405e-58 | -8.615850e-47 |
| Msa0199960 | Msa0642950 | 0.862093 | 6.470106e-64 | -8.615850e-47 |
| Msa0235710 | Msa0642950 | 0.825785 | 3.878973e-54 | -8.615850e-47 |
| Msa0389500 | Msa0642950 | 0.803135 | 4.028715e-49 | -8.615850e-47 |
| Msa0438010 | Msa0642950 | 0.825593 | 4.306446e-54 | -8.615850e-47 |
| Msa0475290 | Msa0642950 | 0.803599 | 3.227652e-49 | -8.615850e-47 |
| Msa0242490 | Msa0642950 | 0.857756 | 1.314246e-62 | -8.615850e-47 |
| Msa0243600 | Msa0642950 | 0.838370 | 2.993746e-57 | -8.615850e-47 |
| Msa0274440 | Msa0642950 | 0.836642 | 8.300593e-57 | -8.615850e-47 |
| Msa0280690 | Msa0642950 | 0.849657 | 2.809899e-60 | -8.615850e-47 |
| Msa0282220 | Msa0642950 | 0.850836 | 1.312370e-60 | -8.615850e-47 |
| Msa0314170 | Msa0642950 | 0.867857 | 1.004089e-65 | -8.615850e-47 |
| Msa0333070 | Msa0642950 | 0.820442 | 6.843299e-53 | -8.615850e-47 |
| Msa0546800 | Msa0642950 | 0.803137 | 4.023471e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642950 | MtrunA17_Chr4g0028931 | 81.662 | 349 | 31 | 1 | 1 | 316 | 1 | 349 | 0.0 | 543 |
| Msa0642950 | MtrunA17_Chr2g0326791 | 70.115 | 348 | 69 | 3 | 1 | 314 | 1 | 347 | 5.88e-163 | 457 |
| Msa0642950 | MtrunA17_Chr6g0467391 | 69.524 | 315 | 62 | 2 | 1 | 281 | 1 | 315 | 1.87e-143 | 407 |
| Msa0642950 | MtrunA17_Chr6g0467371 | 69.524 | 315 | 62 | 2 | 1 | 281 | 1 | 315 | 1.87e-143 | 407 |
| Msa0642950 | MtrunA17_Chr3g0128951 | 54.885 | 348 | 121 | 4 | 1 | 313 | 1 | 347 | 1.60e-109 | 322 |
| Msa0642950 | MtrunA17_Chr3g0128961 | 72.561 | 164 | 45 | 0 | 1 | 164 | 1 | 164 | 7.23e-66 | 211 |
| Msa0642950 | MtrunA17_Chr3g0128961 | 57.282 | 103 | 43 | 1 | 194 | 296 | 249 | 350 | 2.89e-33 | 125 |
| Msa0642950 | MtrunA17_Chr1g0157501 | 32.919 | 322 | 173 | 3 | 13 | 291 | 14 | 335 | 1.46e-36 | 134 |
| Msa0642950 | MtrunA17_Chr5g0393381 | 35.216 | 301 | 157 | 4 | 6 | 269 | 9 | 308 | 2.63e-35 | 130 |
| Msa0642950 | MtrunA17_Chr1g0201531 | 29.693 | 293 | 172 | 3 | 13 | 271 | 16 | 308 | 7.70e-33 | 123 |
| Msa0642950 | MtrunA17_Chr8g0383381 | 28.875 | 329 | 193 | 7 | 12 | 301 | 15 | 341 | 1.82e-32 | 123 |
| Msa0642950 | MtrunA17_Chr3g0129401 | 30.000 | 300 | 175 | 4 | 6 | 271 | 10 | 308 | 1.75e-31 | 120 |
| Msa0642950 | MtrunA17_Chr2g0298931 | 28.060 | 335 | 199 | 7 | 10 | 310 | 54 | 380 | 1.02e-24 | 102 |
| Msa0642950 | MtrunA17_Chr5g0446851 | 27.946 | 297 | 175 | 5 | 10 | 270 | 55 | 348 | 5.00e-20 | 89.7 |
| Msa0642950 | MtrunA17_Chr7g0270591 | 26.149 | 348 | 200 | 11 | 4 | 307 | 8 | 342 | 8.03e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642950 | AT2G28315.1 | 63.037 | 349 | 89 | 6 | 1 | 316 | 1 | 342 | 1.54e-136 | 390 |
| Msa0642950 | AT2G28315.2 | 67.763 | 304 | 65 | 3 | 1 | 271 | 1 | 304 | 5.82e-133 | 380 |
| Msa0642950 | AT1G06890.2 | 54.930 | 355 | 117 | 6 | 1 | 313 | 1 | 354 | 4.78e-109 | 321 |
| Msa0642950 | AT1G06890.1 | 54.930 | 355 | 117 | 6 | 1 | 313 | 1 | 354 | 4.78e-109 | 321 |
| Msa0642950 | AT1G06890.3 | 57.143 | 329 | 107 | 4 | 1 | 296 | 1 | 328 | 3.70e-108 | 319 |
| Msa0642950 | AT1G06890.4 | 57.143 | 329 | 107 | 4 | 1 | 296 | 1 | 328 | 5.14e-108 | 318 |
| Msa0642950 | AT2G30460.1 | 54.674 | 353 | 117 | 6 | 1 | 313 | 1 | 350 | 1.28e-107 | 318 |
| Msa0642950 | AT2G30460.2 | 54.674 | 353 | 117 | 6 | 1 | 313 | 1 | 350 | 1.28e-107 | 318 |
| Msa0642950 | AT2G30460.3 | 52.396 | 313 | 106 | 6 | 41 | 313 | 20 | 329 | 1.23e-95 | 286 |
| Msa0642950 | AT2G30460.6 | 52.396 | 313 | 106 | 6 | 41 | 313 | 20 | 329 | 1.23e-95 | 286 |
| Msa0642950 | AT2G30460.5 | 52.396 | 313 | 106 | 6 | 41 | 313 | 20 | 329 | 1.23e-95 | 286 |
| Msa0642950 | AT2G30460.4 | 71.341 | 164 | 47 | 0 | 1 | 164 | 1 | 164 | 4.19e-67 | 214 |
| Msa0642950 | AT1G21070.1 | 31.751 | 337 | 193 | 3 | 3 | 303 | 7 | 342 | 1.31e-40 | 145 |
| Msa0642950 | AT5G42420.1 | 33.882 | 304 | 165 | 3 | 12 | 280 | 16 | 318 | 4.26e-38 | 138 |
| Msa0642950 | AT1G76670.2 | 30.769 | 338 | 199 | 2 | 6 | 308 | 9 | 346 | 2.09e-37 | 136 |
| Msa0642950 | AT1G76670.1 | 30.769 | 338 | 199 | 2 | 6 | 308 | 9 | 346 | 2.09e-37 | 136 |
| Msa0642950 | AT4G09810.1 | 30.945 | 307 | 175 | 4 | 13 | 283 | 16 | 321 | 9.78e-35 | 129 |
| Msa0642950 | AT1G34020.2 | 30.341 | 323 | 181 | 7 | 18 | 304 | 21 | 335 | 8.67e-34 | 127 |
| Msa0642950 | AT1G34020.1 | 30.341 | 323 | 181 | 7 | 18 | 304 | 21 | 335 | 8.67e-34 | 127 |
| Msa0642950 | AT1G34020.3 | 30.341 | 323 | 181 | 7 | 18 | 304 | 21 | 335 | 8.67e-34 | 127 |
| Msa0642950 | AT4G39390.1 | 28.754 | 313 | 188 | 3 | 12 | 289 | 20 | 332 | 9.40e-34 | 127 |
| Msa0642950 | AT4G39390.2 | 28.754 | 313 | 188 | 3 | 12 | 289 | 20 | 332 | 9.40e-34 | 127 |
| Msa0642950 | AT4G39390.3 | 28.754 | 313 | 188 | 3 | 12 | 289 | 16 | 328 | 1.02e-33 | 126 |
| Msa0642950 | AT5G42420.2 | 32.841 | 271 | 145 | 7 | 12 | 280 | 16 | 251 | 1.61e-26 | 106 |
| Msa0642950 | AT5G57100.1 | 29.371 | 286 | 169 | 3 | 14 | 266 | 67 | 352 | 4.66e-26 | 107 |
| Msa0642950 | AT4G09810.3 | 38.158 | 152 | 94 | 0 | 13 | 164 | 16 | 167 | 1.06e-25 | 102 |
| Msa0642950 | AT4G09810.2 | 30.638 | 235 | 126 | 4 | 85 | 283 | 31 | 264 | 3.83e-24 | 99.8 |
| Msa0642950 | AT5G57100.3 | 32.692 | 208 | 124 | 4 | 10 | 207 | 63 | 264 | 1.13e-21 | 92.8 |
| Msa0642950 | AT5G57100.2 | 30.516 | 213 | 119 | 3 | 10 | 218 | 63 | 250 | 1.59e-21 | 92.8 |
| Msa0642950 | AT5G55950.1 | 27.055 | 292 | 168 | 5 | 10 | 262 | 56 | 341 | 6.23e-20 | 89.7 |
| Msa0642950 | AT5G55950.4 | 27.500 | 280 | 158 | 5 | 22 | 262 | 8 | 281 | 1.47e-19 | 88.2 |
| Msa0642950 | AT5G55950.3 | 27.138 | 269 | 151 | 5 | 33 | 262 | 1 | 263 | 1.65e-16 | 79.3 |
| Msa0642950 | AT5G55950.2 | 28.169 | 213 | 124 | 3 | 10 | 218 | 56 | 243 | 5.12e-15 | 74.7 |
Find 75 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTGAAAGGAACATTAT+TGG | 0.175320 | 4_3:+45289358 | Msa0642950:CDS |
| TTGGACTTGAGAAGAATTTC+AGG | 0.194385 | 4_3:+45286680 | Msa0642950:five_prime_UTR |
| TCTCTATTCTTCTTACTTGT+TGG | 0.215453 | 4_3:+45288198 | Msa0642950:CDS |
| CTCAAGACTTGTCTTGTTCT+AGG | 0.215923 | 4_3:+45289307 | Msa0642950:CDS |
| TTTAAGATCTTCCATAATTT+GGG | 0.220547 | 4_3:+45289692 | Msa0642950:three_prime_UTR |
| ACTTGTCTTGTTCTAGGATT+TGG | 0.249840 | 4_3:+45289313 | Msa0642950:CDS |
| TTCATTGAGTTTATGTTTGT+TGG | 0.255758 | 4_3:-45286558 | None:intergenic |
| ATGATATGACAAAATATAAT+TGG | 0.267975 | 4_3:-45289823 | None:intergenic |
| CAATTCCATTGGATTCTATC+AGG | 0.280510 | 4_3:+45287514 | Msa0642950:CDS |
| TAGACTATAATGCATCTAAT+TGG | 0.296692 | 4_3:+45286378 | Msa0642950:five_prime_UTR |
| ATTACAATAACCCCAAATTA+TGG | 0.304216 | 4_3:-45289703 | None:intergenic |
| TGAGTTTATGTTTGTTGGTT+TGG | 0.307355 | 4_3:-45286553 | None:intergenic |
| GTTCTCTTGAGTGCAGAAAT+AGG | 0.307448 | 4_3:-45289416 | None:intergenic |
| GTTACCTGAACTGCTTCTTT+AGG | 0.308343 | 4_3:-45288059 | None:intergenic |
| TTTAGCACATTCCTAGTAAT+AGG | 0.309611 | 4_3:+45289247 | Msa0642950:CDS |
| ACATGGACATTAAGATTTCA+TGG | 0.332488 | 4_3:-45286475 | None:intergenic |
| AAGAAGCCACAGAAAGGAAT+AGG | 0.334698 | 4_3:-45287160 | None:intergenic |
| GAAACCAAGATTGCTCATTA+AGG | 0.338212 | 4_3:-45287210 | None:intergenic |
| ACTTACAAGTTGGCATTTGA+TGG | 0.352879 | 4_3:+45287358 | Msa0642950:CDS |
| ATAGAGAGAGTTTAATATTC+CGG | 0.359278 | 4_3:-45288182 | None:intergenic |
| CCCAACACTTGATATGTTAC+TGG | 0.360239 | 4_3:-45289280 | None:intergenic |
| AAAGCCTTAATGAGCAATCT+TGG | 0.364932 | 4_3:+45287206 | Msa0642950:CDS |
| TTCTTCTTACTTGTTGGAGT+TGG | 0.376842 | 4_3:+45288204 | Msa0642950:CDS |
| AAATATATTGGTGGCAAAGA+TGG | 0.379539 | 4_3:+45287100 | Msa0642950:exon |
| AGCCTTGGCTTCAATTCCAT+TGG | 0.380768 | 4_3:+45287503 | Msa0642950:CDS |
| CGATCCTCCTTTGTCGTCTC+AGG | 0.401787 | 4_3:+45289456 | Msa0642950:CDS |
| AGCAATCTTGGTTTCCCATT+CGG | 0.407651 | 4_3:+45287218 | Msa0642950:CDS |
| ATGACAGTCTTCATGTCAAC+AGG | 0.417274 | 4_3:-45287434 | None:intergenic |
| GTAGTAGTGACTATCTTGTT+GGG | 0.428321 | 4_3:-45286632 | None:intergenic |
| AGTCTTCATGTCAACAGGTT+TGG | 0.432306 | 4_3:-45287429 | None:intergenic |
| GGATTTCTCAACTTGAGCCT+TGG | 0.433359 | 4_3:+45287488 | Msa0642950:CDS |
| TCTACGTTTCAATCTGTTTG+AGG | 0.451737 | 4_3:+45287406 | Msa0642950:CDS |
| AGAAGCCACAGAAAGGAATA+GGG | 0.454983 | 4_3:-45287159 | None:intergenic |
| AATATATTGGTGGCAAAGAT+GGG | 0.455967 | 4_3:+45287101 | Msa0642950:exon |
| TAATGTTCCTTTCAGTGAAA+GGG | 0.465034 | 4_3:-45289354 | None:intergenic |
| ATTCTAAATGGTGTCTCCAT+TGG | 0.473165 | 4_3:+45287467 | Msa0642950:CDS |
| TTTCAGGCCCTCTTGTGGAT+CGG | 0.483362 | 4_3:+45288668 | Msa0642950:CDS |
| CCAGTAACATATCAAGTGTT+GGG | 0.487472 | 4_3:+45289280 | Msa0642950:CDS |
| ATAATGTTCCTTTCAGTGAA+AGG | 0.490738 | 4_3:-45289355 | None:intergenic |
| CAAATATTCTCCTCTAGTCT+TGG | 0.494440 | 4_3:+45288720 | Msa0642950:CDS |
| AGTAGTAGTGACTATCTTGT+TGG | 0.495583 | 4_3:-45286633 | None:intergenic |
| AAAAGAATTGCTGCTTGGAA+TGG | 0.498395 | 4_3:-45288643 | None:intergenic |
| AAACATGGATGATCAGGAAA+AGG | 0.505311 | 4_3:+45289600 | Msa0642950:CDS |
| GATAGCTAGAAGTGAAAGAA+TGG | 0.517732 | 4_3:-45288268 | None:intergenic |
| TCCAGTAACATATCAAGTGT+TGG | 0.519813 | 4_3:+45289279 | Msa0642950:CDS |
| TGGTGCCCTATTCCTTTCTG+TGG | 0.529063 | 4_3:+45287154 | Msa0642950:CDS |
| TCCTTTCAGTGAAAGGGTCA+TGG | 0.532382 | 4_3:-45289348 | None:intergenic |
| TGATTTACACTAAACAAGGT+TGG | 0.539376 | 4_3:-45289737 | None:intergenic |
| TCCATGACCCTTTCACTGAA+AGG | 0.541368 | 4_3:+45289347 | Msa0642950:CDS |
| TTCCAACAAAATTGAGCTGA+AGG | 0.545680 | 4_3:-45288245 | None:intergenic |
| GTTTCTAGCATAACTGTGAA+TGG | 0.548850 | 4_3:-45288030 | None:intergenic |
| GGCTTTGTTGCATATGACAA+TGG | 0.551399 | 4_3:-45287189 | None:intergenic |
| GGTTATTGTAATGTTCACTC+AGG | 0.560748 | 4_3:+45289714 | Msa0642950:three_prime_UTR |
| CAGCCACAACACTTACAAGT+TGG | 0.572331 | 4_3:+45287348 | Msa0642950:intron |
| TTAAGATCTTCCATAATTTG+GGG | 0.574934 | 4_3:+45289693 | Msa0642950:three_prime_UTR |
| ATCCAATGGAATTGAAGCCA+AGG | 0.586597 | 4_3:-45287505 | None:intergenic |
| AATTTGATTTACACTAAACA+AGG | 0.586605 | 4_3:-45289741 | None:intergenic |
| TGAAACGTAGAGCCACATGA+AGG | 0.588235 | 4_3:-45287394 | None:intergenic |
| AGACAGAAGAAGCCACAGAA+AGG | 0.589376 | 4_3:-45287166 | None:intergenic |
| GCTCAAGTTGAGAAATCCAA+TGG | 0.598682 | 4_3:-45287483 | None:intergenic |
| ACATTACTTACCAAGACTAG+AGG | 0.601567 | 4_3:-45288730 | None:intergenic |
| GAACAAGACAAGTCTTGAGA+TGG | 0.613490 | 4_3:-45289303 | None:intergenic |
| GTAAACCTGATAGAATCCAA+TGG | 0.616739 | 4_3:-45287519 | None:intergenic |
| GATGAGATGTTAAAATCATG+AGG | 0.622736 | 4_3:-45286411 | None:intergenic |
| TAGTAGTGACTATCTTGTTG+GGG | 0.629631 | 4_3:-45286631 | None:intergenic |
| TGACAAAATATAATTGGACA+AGG | 0.632868 | 4_3:-45289817 | None:intergenic |
| AAAATTACCTGAGACGACAA+AGG | 0.636716 | 4_3:-45289463 | None:intergenic |
| GTTAGCATCCGATCCACAAG+AGG | 0.641060 | 4_3:-45288676 | None:intergenic |
| CATAACATAAAATTAACACA+TGG | 0.656642 | 4_3:-45286492 | None:intergenic |
| GAAACGTAGAGCCACATGAA+GGG | 0.662091 | 4_3:-45287393 | None:intergenic |
| ATGCCAACTTGTAAGTGTTG+TGG | 0.665045 | 4_3:-45287351 | None:intergenic |
| GACAAAATATAATTGGACAA+GGG | 0.669302 | 4_3:-45289816 | None:intergenic |
| ATTACCTGAGACGACAAAGG+AGG | 0.680324 | 4_3:-45289460 | None:intergenic |
| TGAGTCTAAGAAATCAAACA+AGG | 0.696876 | 4_3:+45289630 | Msa0642950:CDS |
| TTAGCATCCGATCCACAAGA+GGG | 0.706454 | 4_3:-45288675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAATTTCCAATTATA+AGG | - | chr4_3:45286820-45286839 | None:intergenic | 10.0% |
| !! | TATATATCAATTTAATGATA+TGG | + | chr4_3:45286936-45286955 | Msa0642950:intron | 10.0% |
| !! | ATTAATATATTTATTACTAG+TGG | - | chr4_3:45287560-45287579 | None:intergenic | 10.0% |
| !! | ACATAATGTATTATTAATTA+GGG | - | chr4_3:45288930-45288949 | None:intergenic | 10.0% |
| !! | TACATAATGTATTATTAATT+AGG | - | chr4_3:45288931-45288950 | None:intergenic | 10.0% |
| !!! | AACACTAAATTTTTTTTGAA+AGG | - | chr4_3:45286999-45287018 | None:intergenic | 15.0% |
| !! | GAATCTTGAAAAAAATATAT+TGG | + | chr4_3:45287088-45287107 | Msa0642950:five_prime_UTR | 15.0% |
| !! | TATCATATTATAATACTTAG+AGG | - | chr4_3:45287262-45287281 | None:intergenic | 15.0% |
| !!! | TTATTTTTGTCACATTATTT+TGG | + | chr4_3:45287323-45287342 | Msa0642950:intron | 15.0% |
| !! | ATACATAAAACACTTAATTT+AGG | + | chr4_3:45288513-45288532 | Msa0642950:intron | 15.0% |
| !! | TACATAAAACACTTAATTTA+GGG | + | chr4_3:45288514-45288533 | Msa0642950:intron | 15.0% |
| !! | TAAAATCATATTCTATGTAT+TGG | - | chr4_3:45289148-45289167 | None:intergenic | 15.0% |
| !! | TTATGAATATATAACTCATA+TGG | + | chr4_3:45289165-45289184 | Msa0642950:intron | 15.0% |
| !!! | TATCTTTGATTATATTTTTC+AGG | + | chr4_3:45289537-45289556 | Msa0642950:intron | 15.0% |
| !! | ATGATATGACAAAATATAAT+TGG | - | chr4_3:45289826-45289845 | None:intergenic | 15.0% |
| !! | CATAACATAAAATTAACACA+TGG | - | chr4_3:45286495-45286514 | None:intergenic | 20.0% |
| !! | CTTCTACATCAAAAATAAAA+AGG | + | chr4_3:45286589-45286608 | Msa0642950:five_prime_UTR | 20.0% |
| !!! | AATTTTAGTTCTTCTTTGTA+AGG | + | chr4_3:45286718-45286737 | Msa0642950:five_prime_UTR | 20.0% |
| !! | TAGCATTTATTCCTTATAAT+TGG | + | chr4_3:45286806-45286825 | Msa0642950:intron | 20.0% |
| !! | TCTTGAAAAAAATATATTGG+TGG | + | chr4_3:45287091-45287110 | Msa0642950:five_prime_UTR | 20.0% |
| !! | AAAAATGATAATTACCGAAT+GGG | - | chr4_3:45287235-45287254 | None:intergenic | 20.0% |
| !! | TGACAAAAATAAGAGTTAAA+TGG | - | chr4_3:45287315-45287334 | None:intergenic | 20.0% |
| !! | AAAGGAATATAGAACATTAA+AGG | - | chr4_3:45288322-45288341 | None:intergenic | 20.0% |
| !! | AATATTAACATGCTAACAAA+AGG | - | chr4_3:45288340-45288359 | None:intergenic | 20.0% |
| !! | TTTATAACTAGTATAAGACA+CGG | - | chr4_3:45288780-45288799 | None:intergenic | 20.0% |
| !! | AAAATATAACGTGAAGAAAA+AGG | + | chr4_3:45288856-45288875 | Msa0642950:intron | 20.0% |
| !! | TAAAGATATTAAGTAGTTGT+AGG | + | chr4_3:45288883-45288902 | Msa0642950:intron | 20.0% |
| !!! | TATTTTTCAGGTTAAAGATA+AGG | + | chr4_3:45289549-45289568 | Msa0642950:intron | 20.0% |
| !!! | TTTTAAGATCTTCCATAATT+TGG | + | chr4_3:45289691-45289710 | Msa0642950:three_prime_UTR | 20.0% |
| !!! | TTTAAGATCTTCCATAATTT+GGG | + | chr4_3:45289692-45289711 | Msa0642950:three_prime_UTR | 20.0% |
| !!! | AATTTGATTTACACTAAACA+AGG | - | chr4_3:45289744-45289763 | None:intergenic | 20.0% |
| !!! | ACATGTTACAAAAAAGTGTT+TGG | + | chr4_3:45286341-45286360 | Msa0642950:five_prime_UTR | 25.0% |
| ! | TAGACTATAATGCATCTAAT+TGG | + | chr4_3:45286378-45286397 | Msa0642950:five_prime_UTR | 25.0% |
| !!! | TTCTTCTTTTTTGCTTCAAA+TGG | + | chr4_3:45286518-45286537 | Msa0642950:five_prime_UTR | 25.0% |
| ! | TTCATTGAGTTTATGTTTGT+TGG | - | chr4_3:45286561-45286580 | None:intergenic | 25.0% |
| ! | TATAAGGAATAAATGCTACT+AGG | - | chr4_3:45286804-45286823 | None:intergenic | 25.0% |
| !! | TCAATTCCTTAATTTGACTT+TGG | + | chr4_3:45286840-45286859 | Msa0642950:intron | 25.0% |
| ! | AAATGCATAAGATAGGTATA+TGG | - | chr4_3:45286872-45286891 | None:intergenic | 25.0% |
| ! | CATGTAAACTAATTACTCAT+GGG | - | chr4_3:45286895-45286914 | None:intergenic | 25.0% |
| ! | ACATGTAAACTAATTACTCA+TGG | - | chr4_3:45286896-45286915 | None:intergenic | 25.0% |
| ! | CAAAAATGATAATTACCGAA+TGG | - | chr4_3:45287236-45287255 | None:intergenic | 25.0% |
| ! | AATATTGATACATGCATCAA+AGG | - | chr4_3:45287613-45287632 | None:intergenic | 25.0% |
| ! | CATACCAATGTTTCAAAAAT+CGG | - | chr4_3:45287931-45287950 | None:intergenic | 25.0% |
| !!! | CACTTATTTTCAATATCACT+AGG | - | chr4_3:45288102-45288121 | None:intergenic | 25.0% |
| ! | ATAGAGAGAGTTTAATATTC+CGG | - | chr4_3:45288185-45288204 | None:intergenic | 25.0% |
| ! | GAACATTAAAGGATACAATT+TGG | - | chr4_3:45288311-45288330 | None:intergenic | 25.0% |
| ! | GTTAGCATGTTAATATTATG+TGG | + | chr4_3:45288343-45288362 | Msa0642950:intron | 25.0% |
| ! | GAGAAACAATGTAAGAAAAA+TGG | - | chr4_3:45289494-45289513 | None:intergenic | 25.0% |
| !!! | ATAAATTCACCACTTTTGAA+TGG | + | chr4_3:45289574-45289593 | Msa0642950:CDS | 25.0% |
| !!! | ATGTTTTTACCATTCAAAAG+TGG | - | chr4_3:45289586-45289605 | None:intergenic | 25.0% |
| !! | ACTTTTGAATGGTAAAAACA+TGG | + | chr4_3:45289585-45289604 | Msa0642950:CDS | 25.0% |
| ! | TTAAGATCTTCCATAATTTG+GGG | + | chr4_3:45289693-45289712 | Msa0642950:three_prime_UTR | 25.0% |
| ! | ATTACAATAACCCCAAATTA+TGG | - | chr4_3:45289706-45289725 | None:intergenic | 25.0% |
| ! | GACAAAATATAATTGGACAA+GGG | - | chr4_3:45289819-45289838 | None:intergenic | 25.0% |
| ! | TGACAAAATATAATTGGACA+AGG | - | chr4_3:45289820-45289839 | None:intergenic | 25.0% |
| !! | AGTTTTACATCATCATTCAA+AGG | - | chr4_3:45289898-45289917 | None:intergenic | 25.0% |
| GATGAGATGTTAAAATCATG+AGG | - | chr4_3:45286414-45286433 | None:intergenic | 30.0% | |
| ACATGGACATTAAGATTTCA+TGG | - | chr4_3:45286478-45286497 | None:intergenic | 30.0% | |
| ! | TGAGTTTATGTTTGTTGGTT+TGG | - | chr4_3:45286556-45286575 | None:intergenic | 30.0% |
| TTGCTACCAAAGTCAAATTA+AGG | - | chr4_3:45286849-45286868 | None:intergenic | 30.0% | |
| ! | AAATATATTGGTGGCAAAGA+TGG | + | chr4_3:45287100-45287119 | Msa0642950:exon | 30.0% |
| ! | AATATATTGGTGGCAAAGAT+GGG | + | chr4_3:45287101-45287120 | Msa0642950:exon | 30.0% |
| AGAGATGTCAAAAACTCAAT+TGG | + | chr4_3:45287124-45287143 | Msa0642950:CDS | 30.0% | |
| GAGATGTCAAAAACTCAATT+GGG | + | chr4_3:45287125-45287144 | Msa0642950:CDS | 30.0% | |
| AGATGTCAAAAACTCAATTG+GGG | + | chr4_3:45287126-45287145 | Msa0642950:CDS | 30.0% | |
| !! | ATGCTTTTTGGCATTCTAAA+TGG | + | chr4_3:45287455-45287474 | Msa0642950:CDS | 30.0% |
| CAAATAAAATCTTGACCCAA+AGG | + | chr4_3:45287883-45287902 | Msa0642950:intron | 30.0% | |
| ATTGAAAATAAGTGTGACCA+TGG | + | chr4_3:45288108-45288127 | Msa0642950:intron | 30.0% | |
| TCTCTATTCTTCTTACTTGT+TGG | + | chr4_3:45288198-45288217 | Msa0642950:CDS | 30.0% | |
| ATACTATTTGTGAGAGCTTA+TGG | + | chr4_3:45288406-45288425 | Msa0642950:intron | 30.0% | |
| TTCATATCCTAGATAGCTTA+TGG | - | chr4_3:45288450-45288469 | None:intergenic | 30.0% | |
| ! | CACTTAATTTAGGGCTTTAA+AGG | + | chr4_3:45288523-45288542 | Msa0642950:intron | 30.0% |
| AAACAAAAAGAATTGCTGCT+TGG | - | chr4_3:45288651-45288670 | None:intergenic | 30.0% | |
| GATGAAAGTCTGAAAAACAA+AGG | - | chr4_3:45289194-45289213 | None:intergenic | 30.0% | |
| TTTAGCACATTCCTAGTAAT+AGG | + | chr4_3:45289247-45289266 | Msa0642950:CDS | 30.0% | |
| ! | GAGATGTTTTTCCTATTACT+AGG | - | chr4_3:45289261-45289280 | None:intergenic | 30.0% |
| TAATGTTCCTTTCAGTGAAA+GGG | - | chr4_3:45289357-45289376 | None:intergenic | 30.0% | |
| ATAATGTTCCTTTCAGTGAA+AGG | - | chr4_3:45289358-45289377 | None:intergenic | 30.0% | |
| TTCACTGAAAGGAACATTAT+TGG | + | chr4_3:45289358-45289377 | Msa0642950:CDS | 30.0% | |
| TGAGTCTAAGAAATCAAACA+AGG | + | chr4_3:45289630-45289649 | Msa0642950:CDS | 30.0% | |
| TGATTTACACTAAACAAGGT+TGG | - | chr4_3:45289740-45289759 | None:intergenic | 30.0% | |
| ! | TTGTTGGGGAATGCAATTTT+TGG | - | chr4_3:45286620-45286639 | None:intergenic | 35.0% |
| TAGTAGTGACTATCTTGTTG+GGG | - | chr4_3:45286634-45286653 | None:intergenic | 35.0% | |
| GTAGTAGTGACTATCTTGTT+GGG | - | chr4_3:45286635-45286654 | None:intergenic | 35.0% | |
| AGTAGTAGTGACTATCTTGT+TGG | - | chr4_3:45286636-45286655 | None:intergenic | 35.0% | |
| TTGGACTTGAGAAGAATTTC+AGG | + | chr4_3:45286680-45286699 | Msa0642950:five_prime_UTR | 35.0% | |
| GTTCTTCTTTGTAAGGTATG+TGG | + | chr4_3:45286725-45286744 | Msa0642950:intron | 35.0% | |
| GCATGTCTTTATGTTCAACT+TGG | + | chr4_3:45286773-45286792 | Msa0642950:intron | 35.0% | |
| TCATGGGAAATGCATAAGAT+AGG | - | chr4_3:45286879-45286898 | None:intergenic | 35.0% | |
| GATGTCAAAAACTCAATTGG+GGG | + | chr4_3:45287127-45287146 | Msa0642950:CDS | 35.0% | |
| AAAGCCTTAATGAGCAATCT+TGG | + | chr4_3:45287206-45287225 | Msa0642950:CDS | 35.0% | |
| GAAACCAAGATTGCTCATTA+AGG | - | chr4_3:45287213-45287232 | None:intergenic | 35.0% | |
| ! | ACTTACAAGTTGGCATTTGA+TGG | + | chr4_3:45287358-45287377 | Msa0642950:CDS | 35.0% |
| TCTACGTTTCAATCTGTTTG+AGG | + | chr4_3:45287406-45287425 | Msa0642950:CDS | 35.0% | |
| ! | ATGAAGACTGTCATGCTTTT+TGG | + | chr4_3:45287443-45287462 | Msa0642950:CDS | 35.0% |
| ATTCTAAATGGTGTCTCCAT+TGG | + | chr4_3:45287467-45287486 | Msa0642950:CDS | 35.0% | |
| CAATTCCATTGGATTCTATC+AGG | + | chr4_3:45287514-45287533 | Msa0642950:CDS | 35.0% | |
| GTAAACCTGATAGAATCCAA+TGG | - | chr4_3:45287522-45287541 | None:intergenic | 35.0% | |
| ATTGGCTAAATTGGATGGTT+CGG | - | chr4_3:45287648-45287667 | None:intergenic | 35.0% | |
| GTTCAATTGGCTAAATTGGA+TGG | - | chr4_3:45287653-45287672 | None:intergenic | 35.0% | |
| AAGCAGGCTGCAAAATAATT+GGG | - | chr4_3:45287708-45287727 | None:intergenic | 35.0% | |
| !! | TGCTTGAAACGGATTGAATT+GGG | + | chr4_3:45287723-45287742 | Msa0642950:intron | 35.0% |
| GGATTGAATTGGGGTTAAAT+CGG | + | chr4_3:45287733-45287752 | Msa0642950:intron | 35.0% | |
| TTGTTGATCATCCTGTTCAA+CGG | + | chr4_3:45287843-45287862 | Msa0642950:intron | 35.0% | |
| ATCGAATTGGTGAAACCTTT+GGG | - | chr4_3:45287901-45287920 | None:intergenic | 35.0% | |
| !! | GTTTCTAGCATAACTGTGAA+TGG | - | chr4_3:45288033-45288052 | None:intergenic | 35.0% |
| ! | TTTTCCTAAAGAAGCAGTTC+AGG | + | chr4_3:45288055-45288074 | Msa0642950:CDS | 35.0% |
| TAAGCAATTTAGCATGACCA+TGG | - | chr4_3:45288128-45288147 | None:intergenic | 35.0% | |
| ! | ATTTTACTACTATGTGCAGC+CGG | + | chr4_3:45288163-45288182 | Msa0642950:intron | 35.0% |
| ! | TTCTTCTTACTTGTTGGAGT+TGG | + | chr4_3:45288204-45288223 | Msa0642950:CDS | 35.0% |
| TTCCAACAAAATTGAGCTGA+AGG | - | chr4_3:45288248-45288267 | None:intergenic | 35.0% | |
| GATAGCTAGAAGTGAAAGAA+TGG | - | chr4_3:45288271-45288290 | None:intergenic | 35.0% | |
| GCTATCATAACAACATGTGT+TGG | + | chr4_3:45288285-45288304 | Msa0642950:intron | 35.0% | |
| AAGCTTCTTCTGTATTGTGT+TGG | - | chr4_3:45288587-45288606 | None:intergenic | 35.0% | |
| ! | AAAAGAATTGCTGCTTGGAA+TGG | - | chr4_3:45288646-45288665 | None:intergenic | 35.0% |
| !! | GCAGCAATTCTTTTTGTTTC+AGG | + | chr4_3:45288652-45288671 | Msa0642950:CDS | 35.0% |
| ! | GTATGCAAAGACATTTTGCT+TGG | - | chr4_3:45288701-45288720 | None:intergenic | 35.0% |
| CAAATATTCTCCTCTAGTCT+TGG | + | chr4_3:45288720-45288739 | Msa0642950:CDS | 35.0% | |
| ACATTACTTACCAAGACTAG+AGG | - | chr4_3:45288733-45288752 | None:intergenic | 35.0% | |
| TCCAGTAACATATCAAGTGT+TGG | + | chr4_3:45289279-45289298 | Msa0642950:CDS | 35.0% | |
| CCAGTAACATATCAAGTGTT+GGG | + | chr4_3:45289280-45289299 | Msa0642950:CDS | 35.0% | |
| !! | ACTTGTCTTGTTCTAGGATT+TGG | + | chr4_3:45289313-45289332 | Msa0642950:CDS | 35.0% |
| ! | GGAATACTAGTAGCAGTTTT+TGG | + | chr4_3:45289379-45289398 | Msa0642950:CDS | 35.0% |
| !! | ACTAGTAGCAGTTTTTGGAA+TGG | + | chr4_3:45289384-45289403 | Msa0642950:CDS | 35.0% |
| !!! | CTAGTAGCAGTTTTTGGAAT+GGG | + | chr4_3:45289385-45289404 | Msa0642950:CDS | 35.0% |
| AAAATTACCTGAGACGACAA+AGG | - | chr4_3:45289466-45289485 | None:intergenic | 35.0% | |
| TGGTAAAAACATGGATGATC+AGG | + | chr4_3:45289594-45289613 | Msa0642950:CDS | 35.0% | |
| AAACATGGATGATCAGGAAA+AGG | + | chr4_3:45289600-45289619 | Msa0642950:CDS | 35.0% | |
| GGTTATTGTAATGTTCACTC+AGG | + | chr4_3:45289714-45289733 | Msa0642950:three_prime_UTR | 35.0% | |
| AAAACTCAATTGGGGGTCAT+TGG | + | chr4_3:45287134-45287153 | Msa0642950:CDS | 40.0% | |
| AGAAGCCACAGAAAGGAATA+GGG | - | chr4_3:45287162-45287181 | None:intergenic | 40.0% | |
| AAGAAGCCACAGAAAGGAAT+AGG | - | chr4_3:45287163-45287182 | None:intergenic | 40.0% | |
| !! | GGCTTTGTTGCATATGACAA+TGG | - | chr4_3:45287192-45287211 | None:intergenic | 40.0% |
| AGCAATCTTGGTTTCCCATT+CGG | + | chr4_3:45287218-45287237 | Msa0642950:CDS | 40.0% | |
| ! | ATGCCAACTTGTAAGTGTTG+TGG | - | chr4_3:45287354-45287373 | None:intergenic | 40.0% |
| !! | TACTTTTTGCACCCTTCATG+TGG | + | chr4_3:45287382-45287401 | Msa0642950:CDS | 40.0% |
| AGTCTTCATGTCAACAGGTT+TGG | - | chr4_3:45287432-45287451 | None:intergenic | 40.0% | |
| ATGACAGTCTTCATGTCAAC+AGG | - | chr4_3:45287437-45287456 | None:intergenic | 40.0% | |
| !! | GCTCAAGTTGAGAAATCCAA+TGG | - | chr4_3:45287486-45287505 | None:intergenic | 40.0% |
| ATCCAATGGAATTGAAGCCA+AGG | - | chr4_3:45287508-45287527 | None:intergenic | 40.0% | |
| CTCGGTTCAATTGGCTAAAT+TGG | - | chr4_3:45287657-45287676 | None:intergenic | 40.0% | |
| TAGCCAATTGAACCGAGAAT+CGG | + | chr4_3:45287660-45287679 | Msa0642950:intron | 40.0% | |
| ! | TAACCGATTCTCGGTTCAAT+TGG | - | chr4_3:45287666-45287685 | None:intergenic | 40.0% |
| CAAGCAGGCTGCAAAATAAT+TGG | - | chr4_3:45287709-45287728 | None:intergenic | 40.0% | |
| ! | ATTTTGCAGCCTGCTTGAAA+CGG | + | chr4_3:45287712-45287731 | Msa0642950:intron | 40.0% |
| CAATTCAATCCGTTTCAAGC+AGG | - | chr4_3:45287724-45287743 | None:intergenic | 40.0% | |
| !! | CTGCTTGAAACGGATTGAAT+TGG | + | chr4_3:45287722-45287741 | Msa0642950:intron | 40.0% |
| !! | GCTTGAAACGGATTGAATTG+GGG | + | chr4_3:45287724-45287743 | Msa0642950:intron | 40.0% |
| GAATTGGGGTTAAATCGGTT+TGG | + | chr4_3:45287738-45287757 | Msa0642950:intron | 40.0% | |
| GATCGAATTGGTGAAACCTT+TGG | - | chr4_3:45287902-45287921 | None:intergenic | 40.0% | |
| GGTTTCACCAATTCGATCTT+CGG | + | chr4_3:45287904-45287923 | Msa0642950:intron | 40.0% | |
| !!! | CGGTCCGATTTTTGAAACAT+TGG | + | chr4_3:45287924-45287943 | Msa0642950:intron | 40.0% |
| GTTACCTGAACTGCTTCTTT+AGG | - | chr4_3:45288062-45288081 | None:intergenic | 40.0% | |
| ! | GACCTTCAGCTCAATTTTGT+TGG | + | chr4_3:45288243-45288262 | Msa0642950:CDS | 40.0% |
| GACAAGTCCATAAGCTATCT+AGG | + | chr4_3:45288440-45288459 | Msa0642950:intron | 40.0% | |
| TATAAACCCGTGCAATTCAC+AGG | + | chr4_3:45288794-45288813 | Msa0642950:intron | 40.0% | |
| ! | AGTTTCAGACACTAGTCTAG+TGG | - | chr4_3:45289116-45289135 | None:intergenic | 40.0% |
| CCCAACACTTGATATGTTAC+TGG | - | chr4_3:45289283-45289302 | None:intergenic | 40.0% | |
| GAACAAGACAAGTCTTGAGA+TGG | - | chr4_3:45289306-45289325 | None:intergenic | 40.0% | |
| ! | CTCAAGACTTGTCTTGTTCT+AGG | + | chr4_3:45289307-45289326 | Msa0642950:CDS | 40.0% |
| GTTCTCTTGAGTGCAGAAAT+AGG | - | chr4_3:45289419-45289438 | None:intergenic | 40.0% | |
| !!! | GGGGAATGCAATTTTTGGTG+AGG | - | chr4_3:45286615-45286634 | None:intergenic | 45.0% |
| CTCTTTCTCTCTCTCTCTCT+TGG | + | chr4_3:45286661-45286680 | Msa0642950:five_prime_UTR | 45.0% | |
| AGACAGAAGAAGCCACAGAA+AGG | - | chr4_3:45287169-45287188 | None:intergenic | 45.0% | |
| ! | CAACTTGTAAGTGTTGTGGC+TGG | - | chr4_3:45287350-45287369 | None:intergenic | 45.0% |
| CAGCCACAACACTTACAAGT+TGG | + | chr4_3:45287348-45287367 | Msa0642950:intron | 45.0% | |
| GAAACGTAGAGCCACATGAA+GGG | - | chr4_3:45287396-45287415 | None:intergenic | 45.0% | |
| TGAAACGTAGAGCCACATGA+AGG | - | chr4_3:45287397-45287416 | None:intergenic | 45.0% | |
| GGATTTCTCAACTTGAGCCT+TGG | + | chr4_3:45287488-45287507 | Msa0642950:CDS | 45.0% | |
| AGCCTTGGCTTCAATTCCAT+TGG | + | chr4_3:45287503-45287522 | Msa0642950:CDS | 45.0% | |
| TGAACCGAGAATCGGTTAGT+TGG | + | chr4_3:45287668-45287687 | Msa0642950:intron | 45.0% | |
| ! | CTGACCAACTAACCGATTCT+CGG | - | chr4_3:45287675-45287694 | None:intergenic | 45.0% |
| ! | GAATCGGTTAGTTGGTCAGT+TGG | + | chr4_3:45287676-45287695 | Msa0642950:intron | 45.0% |
| !! | GGGTTAAATCGGTTTGGTTG+CGG | + | chr4_3:45287744-45287763 | Msa0642950:intron | 45.0% |
| TTGGTTGCGGTAGATTCAAC+TGG | + | chr4_3:45287757-45287776 | Msa0642950:intron | 45.0% | |
| TGGTTGCGGTAGATTCAACT+GGG | + | chr4_3:45287758-45287777 | Msa0642950:intron | 45.0% | |
| TTGATCATCCTGTTCAACGG+TGG | + | chr4_3:45287846-45287865 | Msa0642950:intron | 45.0% | |
| CAGTTTAACCACCGTTGAAC+AGG | - | chr4_3:45287857-45287876 | None:intergenic | 45.0% | |
| AATCGGACCGAAGATCGAAT+TGG | - | chr4_3:45287914-45287933 | None:intergenic | 45.0% | |
| AGACTGGTAGAGAAGTTGTG+TGG | - | chr4_3:45288620-45288639 | None:intergenic | 45.0% | |
| !! | TTTTGTTTCAGGCCCTCTTG+TGG | + | chr4_3:45288663-45288682 | Msa0642950:CDS | 45.0% |
| TTAGCATCCGATCCACAAGA+GGG | - | chr4_3:45288678-45288697 | None:intergenic | 45.0% | |
| AACTAGTATAAGACACGGCG+AGG | - | chr4_3:45288775-45288794 | None:intergenic | 45.0% | |
| AATGTCGCCTGTGAATTGCA+CGG | - | chr4_3:45288804-45288823 | None:intergenic | 45.0% | |
| TCCATGACCCTTTCACTGAA+AGG | + | chr4_3:45289347-45289366 | Msa0642950:CDS | 45.0% | |
| TCCTTTCAGTGAAAGGGTCA+TGG | - | chr4_3:45289351-45289370 | None:intergenic | 45.0% | |
| ATTACCTGAGACGACAAAGG+AGG | - | chr4_3:45289463-45289482 | None:intergenic | 45.0% | |
| !! | AGTAATAAATATATTAATTA+TGG | + | chr4_3:45287562-45287581 | Msa0642950:intron | 5.0% |
| !! | AAAAAAATGTTAAAAATATT+TGG | + | chr4_3:45287586-45287605 | Msa0642950:intron | 5.0% |
| !!! | TAAAAAGATATATTTAAAAT+AGG | - | chr4_3:45287816-45287835 | None:intergenic | 5.0% |
| TGGTGCCCTATTCCTTTCTG+TGG | + | chr4_3:45287154-45287173 | Msa0642950:CDS | 50.0% | |
| TTTCAGGCCCTCTTGTGGAT+CGG | + | chr4_3:45288668-45288687 | Msa0642950:CDS | 50.0% | |
| GTTAGCATCCGATCCACAAG+AGG | - | chr4_3:45288679-45288698 | None:intergenic | 50.0% | |
| ATGTCGCCTGTGAATTGCAC+GGG | - | chr4_3:45288803-45288822 | None:intergenic | 50.0% | |
| CTGCTTGGAATGGAGCAGAC+TGG | - | chr4_3:45288636-45288655 | None:intergenic | 55.0% | |
| CGATCCTCCTTTGTCGTCTC+AGG | + | chr4_3:45289456-45289475 | Msa0642950:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45286317 | 45289946 | 45286317 | ID=Msa0642950;Name=Msa0642950 |
| chr4_3 | mRNA | 45286317 | 45289946 | 45286317 | ID=Msa0642950-mRNA-1;Parent=Msa0642950;Name=Msa0642950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=456|0.71|0.62|1|0.57|0.37|8|280|316 |
| chr4_3 | exon | 45286317 | 45286739 | 45286317 | ID=Msa0642950-mRNA-1:exon:10455;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45287086 | 45287239 | 45287086 | ID=Msa0642950-mRNA-1:exon:10456;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45287351 | 45287535 | 45287351 | ID=Msa0642950-mRNA-1:exon:10457;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45288009 | 45288076 | 45288009 | ID=Msa0642950-mRNA-1:exon:10458;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45288182 | 45288300 | 45288182 | ID=Msa0642950-mRNA-1:exon:10459;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45288637 | 45288741 | 45288637 | ID=Msa0642950-mRNA-1:exon:10460;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45289233 | 45289477 | 45289233 | ID=Msa0642950-mRNA-1:exon:10461;Parent=Msa0642950-mRNA-1 |
| chr4_3 | exon | 45289559 | 45289946 | 45289559 | ID=Msa0642950-mRNA-1:exon:10462;Parent=Msa0642950-mRNA-1 |
| chr4_3 | five_prime_UTR | 45286317 | 45286739 | 45286317 | ID=Msa0642950-mRNA-1:five_prime_utr;Parent=Msa0642950-mRNA-1 |
| chr4_3 | five_prime_UTR | 45287086 | 45287118 | 45287086 | ID=Msa0642950-mRNA-1:five_prime_utr;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45287119 | 45287239 | 45287119 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45287351 | 45287535 | 45287351 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45288009 | 45288076 | 45288009 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45288182 | 45288300 | 45288182 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45288637 | 45288741 | 45288637 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45289233 | 45289477 | 45289233 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | CDS | 45289559 | 45289666 | 45289559 | ID=Msa0642950-mRNA-1:cds;Parent=Msa0642950-mRNA-1 |
| chr4_3 | three_prime_UTR | 45289667 | 45289946 | 45289667 | ID=Msa0642950-mRNA-1:three_prime_utr;Parent=Msa0642950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
