AlfalfaGEDB | Msa0358860

M. sativa cultivar zhongmu-4 / Msa0358860

KEGG: K00799
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748
PFAM: PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358860	XP_013459651.1	98.140	215	4	0	1	215	1	215	4.56e-152	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358860	sp\|O80852\|GSTF9_ARATH	60.930	215	84	0	1	215	1	215	3.52e-98	287

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358860	A0A072UVM3	98.140	215	4	0	1	215	1	215	2.18e-152	431

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0358860	0.827215	1.769204e-54	-8.615850e-47
Msa0004840	Msa0358860	0.823935	1.059404e-53	-8.615850e-47
Msa0006040	Msa0358860	0.818526	1.872041e-52	-8.615850e-47
Msa0007440	Msa0358860	0.850224	1.949624e-60	-8.615850e-47
Msa0010490	Msa0358860	0.881960	1.553702e-70	-8.615850e-47
Msa0010500	Msa0358860	0.864400	1.249438e-64	-8.615850e-47
Msa0015090	Msa0358860	0.829493	4.990299e-55	-8.615850e-47
Msa0015930	Msa0358860	0.816495	5.368701e-52	-8.615850e-47
Msa0018070	Msa0358860	0.810464	1.137665e-50	-8.615850e-47
Msa0020390	Msa0358860	0.843154	1.668455e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358860	MtrunA17_Chr3g0095781	98.140	215	4	0	1	215	1	215	4.19e-156	431
Msa0358860	MtrunA17_Chr5g0442751	71.759	216	60	1	1	215	1	216	5.80e-112	319
Msa0358860	MtrunA17_Chr5g0442741	68.981	216	66	1	1	215	1	216	6.44e-110	314
Msa0358860	MtrunA17_Chr3g0095821	79.882	169	34	0	47	215	1	169	2.09e-101	290
Msa0358860	MtrunA17_Chr3g0109891	57.746	213	89	1	1	212	1	213	1.70e-87	257
Msa0358860	MtrunA17_Chr1g0195831	49.524	210	103	3	1	208	1	209	3.93e-71	216
Msa0358860	MtrunA17_Chr1g0157211	48.165	218	107	3	3	214	5	222	3.93e-67	206
Msa0358860	MtrunA17_Chr1g0195811	41.905	210	120	2	2	210	3	211	3.64e-55	175
Msa0358860	MtrunA17_Chr1g0195821	42.381	210	119	2	2	210	3	211	1.18e-52	168
Msa0358860	MtrunA17_Chr3g0095811	68.750	48	15	0	1	48	1	48	3.48e-17	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358860	AT2G30860.1	60.930	215	84	0	1	215	1	215	3.58e-99	287
Msa0358860	AT2G30870.1	59.070	215	88	0	1	215	1	215	4.52e-97	281
Msa0358860	AT3G03190.1	51.402	214	103	1	1	213	1	214	7.84e-77	230
Msa0358860	AT5G17220.1	47.867	211	109	1	1	210	1	211	1.60e-68	209
Msa0358860	AT3G62760.1	47.847	209	106	3	1	207	1	208	9.42e-68	207
Msa0358860	AT2G30860.2	60.390	154	61	0	1	154	1	154	7.13e-66	201
Msa0358860	AT1G02930.2	45.411	207	110	3	3	208	4	208	7.50e-56	177
Msa0358860	AT1G02930.1	45.411	207	110	3	3	208	4	208	7.50e-56	177
Msa0358860	AT1G02920.1	45.894	207	110	2	3	208	4	209	2.15e-54	173
Msa0358860	AT2G47730.2	42.857	210	117	3	5	212	54	262	9.30e-54	173

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Find 73 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTTGCTTTCTAGTG+TGG	0.500702	3_1:-44706212	Msa0358860:three_prime_UTR
AAAGGGGACTTGTGGAACAA+TGG	0.610264	3_1:-44706686	Msa0358860:CDS
AAAGTTTACGGACCAGCCTA+TGG	0.503832	3_1:-44707433	Msa0358860:CDS
AAATAAGAGTTTCAGTTTGA+GGG	0.466075	3_1:-44706275	Msa0358860:three_prime_UTR
AACATGGTTGTGAAAGTTTA+CGG	0.352941	3_1:-44707445	Msa0358860:CDS
AACCAAGGAACCGATTTGTT+AGG	0.406691	3_1:-44706723	Msa0358860:CDS
AACCTGCAGTTTGAGAAAAT+CGG	0.405623	3_1:+44707318	None:intergenic
AAGAGTTTCAGTTTGAGGGG+GGG	0.651609	3_1:-44706271	Msa0358860:three_prime_UTR
AATAAGAGTTTCAGTTTGAG+GGG	0.518454	3_1:-44706274	Msa0358860:three_prime_UTR
AATAGTGACCAAATGCAAGA+TGG	0.590599	3_1:+44706457	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCTTGAAGTTATAGTGG+AGG	+	chr3_1:44706116-44706135	None:intergenic	30.0%
AACATGGTTGTGAAAGTTTA+CGG	-	chr3_1:44706202-44706221	Msa0358860:three_prime_UTR	30.0%
TGTTGATATTGATCTCTTCA+AGG	-	chr3_1:44706291-44706310	Msa0358860:three_prime_UTR	30.0%
GTTGATATTGATCTCTTCAA+GGG	-	chr3_1:44706292-44706311	Msa0358860:three_prime_UTR	30.0%
AAACACATGAATCAGGATAA+GGG	+	chr3_1:44706646-44706665	None:intergenic	30.0%
AAAACACATGAATCAGGATA+AGG	+	chr3_1:44706647-44706666	None:intergenic	30.0%
TGGTTAATCATCTTCACTTA+AGG	-	chr3_1:44706682-44706701	Msa0358860:CDS	30.0%
TCTAGGCTTAATTTATCTCT+CGG	-	chr3_1:44706756-44706775	Msa0358860:CDS	30.0%
TATCACTCGATTCATACTAA+TGG	-	chr3_1:44706836-44706855	Msa0358860:intron	30.0%
TACTGTCTTTCCTAACAAAT+CGG	+	chr3_1:44706937-44706956	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	44706099	44707570	44706099	ID=Msa0358860;Name=Msa0358860
chr3_1	mRNA	44706099	44707570	44706099	ID=Msa0358860-mRNA-1;Parent=Msa0358860;Name=Msa0358860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=106\|1\|1\|1\|1\|1\|3\|233\|215
chr3_1	exon	44706099	44706786	44706099	ID=Msa0358860-mRNA-1:exon:7920;Parent=Msa0358860-mRNA-1
chr3_1	exon	44707187	44707235	44707187	ID=Msa0358860-mRNA-1:exon:7919;Parent=Msa0358860-mRNA-1
chr3_1	exon	44707321	44707570	44707321	ID=Msa0358860-mRNA-1:exon:7918;Parent=Msa0358860-mRNA-1
chr3_1	five_prime_UTR	44707465	44707570	44707465	ID=Msa0358860-mRNA-1:five_prime_utr;Parent=Msa0358860-mRNA-1
chr3_1	CDS	44707321	44707464	44707321	ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1	CDS	44707187	44707235	44707187	ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1	CDS	44706332	44706786	44706332	ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1	three_prime_UTR	44706099	44706331	44706099	ID=Msa0358860-mRNA-1:three_prime_utr;Parent=Msa0358860-mRNA-1

Gene Sequence

>Msa0358860

ATGGTTGTGAAAGTTTACGGACCAGCCTATGGTTCTCCAAAAAGGGTGTTGGTATGTCTTTTTGAGAAGGAGGTTGAGTTTGAAGCTGTTGATATTGATCTCTTCAAGGGAGAGCATAAACAACCCGATTTTCTCAAACTGCAGCCTTTTGGAGAGGTTCCTCTTGTTCAAGATGGTGATTATACCCTCTATGAATCTCGGGCAATAATCAGATACTATGCAGAAAAGTACAAGAACCAAGGAACCGATTTGTTAGGAAAGACAGTAGAAGAAAGGGGACTTGTGGAACAATGGCTTGAAGTGGAAGCACATAACTTTCACCCAGCAATCTACAGCTTGGTCATCAATGTTCTGTTTGCACCGTTAAAGGGTGAAACCGGTGACCAGAAAGTGATTGAAGAGAGTGATGAAAAGCTGAAGAAAGTGTTGGATATTTACGAGGAAAGGCTCTCAAAGACAAAGTACTTGGCTGGCGATTTCTTTAGTCTTGCTGATCTTAGCCATCTTGCATTTGGTCACTATTTGGTGAATCAAACTGGGAGAGGAAATTTGGTTAGAGAGAGGAAACATGTGAGTGCATGGTGGGATGATATTAGTAGCAGGCCATCTTGGAAGAAGGTTCTTGAACTATATAAATACCCAGTGTAA

Protein sequence

>Msa0358860

MVVKVYGPAYGSPKRVLVCLFEKEVEFEAVDIDLFKGEHKQPDFLKLQPFGEVPLVQDGDYTLYESRAIIRYYAEKYKNQGTDLLGKTVEERGLVEQWLEVEAHNFHPAIYSLVINVLFAPLKGETGDQKVIEESDEKLKKVLDIYEERLSKTKYLAGDFFSLADLSHLAFGHYLVNQTGRGNLVRERKHVSAWWDDISSRPSWKKVLELYKYPV*