AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358860 MtrunA17_Chr3g0095781 98.140 215 4 0 1 215 1 215 4.19e-156 431
Msa0358860 MtrunA17_Chr5g0442751 71.759 216 60 1 1 215 1 216 5.80e-112 319
Msa0358860 MtrunA17_Chr5g0442741 68.981 216 66 1 1 215 1 216 6.44e-110 314
Msa0358860 MtrunA17_Chr3g0095821 79.882 169 34 0 47 215 1 169 2.09e-101 290
Msa0358860 MtrunA17_Chr3g0109891 57.746 213 89 1 1 212 1 213 1.70e-87 257
Msa0358860 MtrunA17_Chr1g0195831 49.524 210 103 3 1 208 1 209 3.93e-71 216
Msa0358860 MtrunA17_Chr1g0157211 48.165 218 107 3 3 214 5 222 3.93e-67 206
Msa0358860 MtrunA17_Chr1g0195811 41.905 210 120 2 2 210 3 211 3.64e-55 175
Msa0358860 MtrunA17_Chr1g0195821 42.381 210 119 2 2 210 3 211 1.18e-52 168
Msa0358860 MtrunA17_Chr3g0095811 68.750 48 15 0 1 48 1 48 3.48e-17 73.2
Msa0358860 MtrunA17_Chr8g0386711 28.866 194 127 4 1 190 1 187 1.17e-16 76.3
Msa0358860 MtrunA17_Chr1g0198101 46.970 66 34 1 145 210 1 65 6.78e-14 64.3
Msa0358860 MtrunA17_Chr4g0076681 37.234 94 58 1 15 108 29 121 1.58e-12 64.3
Msa0358860 MtrunA17_Chr2g0276951 25.556 180 107 5 39 208 42 204 8.04e-12 63.5
Msa0358860 MtrunA17_Chr4g0076691 29.560 159 95 5 15 166 29 177 1.67e-11 61.6
Msa0358860 MtrunA17_Chr8g0386701 26.744 172 116 5 3 167 5 173 2.89e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358860 AT2G30860.1 60.930 215 84 0 1 215 1 215 3.58e-99 287
Msa0358860 AT2G30870.1 59.070 215 88 0 1 215 1 215 4.52e-97 281
Msa0358860 AT3G03190.1 51.402 214 103 1 1 213 1 214 7.84e-77 230
Msa0358860 AT5G17220.1 47.867 211 109 1 1 210 1 211 1.60e-68 209
Msa0358860 AT3G62760.1 47.847 209 106 3 1 207 1 208 9.42e-68 207
Msa0358860 AT2G30860.2 60.390 154 61 0 1 154 1 154 7.13e-66 201
Msa0358860 AT1G02930.2 45.411 207 110 3 3 208 4 208 7.50e-56 177
Msa0358860 AT1G02930.1 45.411 207 110 3 3 208 4 208 7.50e-56 177
Msa0358860 AT1G02920.1 45.894 207 110 2 3 208 4 209 2.15e-54 173
Msa0358860 AT2G47730.2 42.857 210 117 3 5 212 54 262 9.30e-54 173
Msa0358860 AT2G47730.1 42.857 210 117 3 5 212 54 262 9.30e-54 173
Msa0358860 AT2G02930.1 44.286 210 112 3 3 208 4 212 1.06e-52 169
Msa0358860 AT4G02520.1 43.062 209 114 3 3 207 4 211 1.19e-52 169
Msa0358860 AT1G49860.1 41.872 203 115 2 16 215 19 221 1.08e-50 165
Msa0358860 AT1G02950.3 40.686 204 118 3 4 205 26 228 3.43e-47 155
Msa0358860 AT1G02950.1 40.686 204 118 3 4 205 26 228 3.43e-47 155
Msa0358860 AT1G02950.2 40.686 204 118 3 4 205 28 230 3.44e-47 155
Msa0358860 AT1G02950.5 40.686 204 118 3 4 205 38 240 3.62e-47 156
Msa0358860 AT1G02940.4 38.278 209 126 3 4 210 40 247 9.06e-46 152
Msa0358860 AT1G02940.1 38.278 209 126 3 4 210 40 247 9.06e-46 152
Msa0358860 AT1G02940.3 38.278 209 126 3 4 210 53 260 9.81e-46 153
Msa0358860 AT1G02940.2 38.278 209 126 3 4 210 65 272 1.19e-45 153
Msa0358860 AT1G02950.4 37.241 145 89 2 62 205 59 202 9.18e-27 102
Msa0358860 AT5G41240.1 27.500 200 139 3 1 194 1 200 9.65e-14 69.7
Msa0358860 AT5G41210.1 25.616 203 145 4 1 197 2 204 1.21e-12 65.5
Msa0358860 AT1G57720.1 27.168 173 114 4 39 208 40 203 1.00e-11 63.9
Msa0358860 AT1G57720.2 27.168 173 114 4 39 208 40 203 1.00e-11 63.9
Msa0358860 AT5G41220.1 26.500 200 141 3 1 194 1 200 1.09e-11 63.9

Find 73 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCTCTTCAATCACTTTC+TGG 0.116870 3_1:+44706574 None:intergenic
CTCAAACTGAAACTCTTATT+TGG 0.129615 3_1:+44706277 None:intergenic
TGTTCTGTTTGCACCGTTAA+AGG 0.197508 3_1:-44706610 Msa0358860:CDS
TCAAACTGGGAGAGGAAATT+TGG 0.210954 3_1:-44706427 Msa0358860:CDS
TCTTGCATTTGGTCACTATT+TGG 0.246792 3_1:-44706454 Msa0358860:CDS
ACAGAAACATACATATGTTT+TGG 0.284207 3_1:+44706159 None:intergenic
CAGCCTATGGTTCTCCAAAA+AGG 0.287014 3_1:-44707420 Msa0358860:CDS
CAGTAATAAAATTTGATGTT+TGG 0.306399 3_1:-44706124 Msa0358860:three_prime_UTR
TCAAACTGAAACTCTTATTT+GGG 0.307871 3_1:+44706278 None:intergenic
CACTATTTGGTGAATCAAAC+TGG 0.321868 3_1:-44706441 Msa0358860:CDS
GATCTTAGCCATCTTGCATT+TGG 0.333958 3_1:-44706465 Msa0358860:CDS
AACATGGTTGTGAAAGTTTA+CGG 0.352941 3_1:-44707445 Msa0358860:CDS
GATGGTGATTATACCCTCTA+TGG 0.366109 3_1:-44707186 Msa0358860:intron
TCAATATCTTGAAGTTATAG+TGG 0.388984 3_1:+44707531 None:intergenic
AACCTGCAGTTTGAGAAAAT+CGG 0.405623 3_1:+44707318 None:intergenic
AACCAAGGAACCGATTTGTT+AGG 0.406691 3_1:-44706723 Msa0358860:CDS
TCACCGGTTTCACCCTTTAA+CGG 0.407596 3_1:+44706597 None:intergenic
TACTGTCTTTCCTAACAAAT+CGG 0.410470 3_1:+44706713 None:intergenic
TTCCTAACAAATCGGTTCCT+TGG 0.418961 3_1:+44706721 None:intergenic
CAAATAAGAGTTTCAGTTTG+AGG 0.424116 3_1:-44706276 Msa0358860:three_prime_UTR
GTTCTGTTTGCACCGTTAAA+GGG 0.425408 3_1:-44706609 Msa0358860:CDS
TAGTGGAGGTAAGTGGAAAA+AGG 0.428161 3_1:+44707548 None:intergenic
TTCAATCACTTTCTGGTCAC+CGG 0.431772 3_1:+44706581 None:intergenic
TGTTCTAGACAATATGTTGT+AGG 0.445648 3_1:-44706187 Msa0358860:three_prime_UTR
ACCTGCAGTTTGAGAAAATC+GGG 0.447227 3_1:+44707319 None:intergenic
ATGACCAAGCTGTAGATTGC+TGG 0.457280 3_1:+44706636 None:intergenic
TGTTGATATTGATCTCTTCA+AGG 0.461501 3_1:-44707356 Msa0358860:CDS
AGGAAAGACAGTAGAAGAAA+GGG 0.463386 3_1:-44706703 Msa0358860:CDS
GCACCGTTAAAGGGTGAAAC+CGG 0.464712 3_1:-44706600 Msa0358860:CDS
AAATAAGAGTTTCAGTTTGA+GGG 0.466075 3_1:-44706275 Msa0358860:three_prime_UTR
TAGGAAAGACAGTAGAAGAA+AGG 0.466401 3_1:-44706704 Msa0358860:CDS
TTAAAGTGCAAATTATAATG+AGG 0.498654 3_1:-44706096 None:intergenic
AAAATGTTTGCTTTCTAGTG+TGG 0.500702 3_1:-44706212 Msa0358860:three_prime_UTR
ATATTAGTAGCAGGCCATCT+TGG 0.502723 3_1:-44706368 Msa0358860:CDS
AAAGTTTACGGACCAGCCTA+TGG 0.503832 3_1:-44707433 Msa0358860:CDS
GAGGAAATTTGGTTAGAGAG+AGG 0.505432 3_1:-44706416 Msa0358860:CDS
CACAAACAAAACCATTACAC+TGG 0.506729 3_1:+44706318 None:intergenic
TCAAGAACCTTCTTCCAAGA+TGG 0.510216 3_1:+44706354 None:intergenic
TATATAAATACCCAGTGTAA+TGG 0.510668 3_1:-44706329 Msa0358860:exon
GAGGTTCCTCTTGTTCAAGA+TGG 0.514108 3_1:-44707204 Msa0358860:CDS
TGTTGGATATTTACGAGGAA+AGG 0.517509 3_1:-44706533 Msa0358860:CDS
AATAAGAGTTTCAGTTTGAG+GGG 0.518454 3_1:-44706274 Msa0358860:three_prime_UTR
TAGCAGGCCATCTTGGAAGA+AGG 0.522731 3_1:-44706361 Msa0358860:CDS
ACAAGAGGAACCTCTCCAAA+AGG 0.531793 3_1:+44707213 None:intergenic
TCAAAGACAAAGTACTTGGC+TGG 0.539946 3_1:-44706507 Msa0358860:CDS
GCTCTCAAAGACAAAGTACT+TGG 0.540511 3_1:-44706511 Msa0358860:CDS
GTTGATATTGATCTCTTCAA+GGG 0.544872 3_1:-44707355 Msa0358860:CDS
TTGGTGAATCAAACTGGGAG+AGG 0.560271 3_1:-44706435 Msa0358860:CDS
GAAGTTATAGTGGAGGTAAG+TGG 0.562323 3_1:+44707541 None:intergenic
GATGAGGTGGCTAACCATAG+AGG 0.563044 3_1:+44707172 None:intergenic
GGTGGGATGATATTAGTAGC+AGG 0.571858 3_1:-44706377 Msa0358860:CDS
TGAAAAGCTGAAGAAAGTGT+TGG 0.579668 3_1:-44706550 Msa0358860:CDS
TAATCACCATCTTGAACAAG+AGG 0.579904 3_1:+44707198 None:intergenic
TCACCCAGCAATCTACAGCT+TGG 0.583361 3_1:-44706640 Msa0358860:CDS
AATAGTGACCAAATGCAAGA+TGG 0.590599 3_1:+44706457 None:intergenic
ATGAGGTGGCTAACCATAGA+GGG 0.609900 3_1:+44707173 None:intergenic
AAAGGGGACTTGTGGAACAA+TGG 0.610264 3_1:-44706686 Msa0358860:CDS
GAAACATGTGAGTGCATGGT+GGG 0.618318 3_1:-44706394 Msa0358860:CDS
AGTAGAAGAAAGGGGACTTG+TGG 0.620270 3_1:-44706694 Msa0358860:CDS
ACAAACAAAACCATTACACT+GGG 0.621639 3_1:+44706319 None:intergenic
TGACCAAGCTGTAGATTGCT+GGG 0.623969 3_1:+44706637 None:intergenic
TGTGGAACAATGGCTTGAAG+TGG 0.629943 3_1:-44706676 Msa0358860:CDS
TAAGAGTTTCAGTTTGAGGG+GGG 0.636397 3_1:-44706272 Msa0358860:three_prime_UTR
ATAAGAGTTTCAGTTTGAGG+GGG 0.638109 3_1:-44706273 Msa0358860:three_prime_UTR
CAAACTGAAACTCTTATTTG+GGG 0.641556 3_1:+44706279 None:intergenic
AGAGGAAACATGTGAGTGCA+TGG 0.644423 3_1:-44706398 Msa0358860:CDS
GGAAAGACAGTAGAAGAAAG+GGG 0.650622 3_1:-44706702 Msa0358860:CDS
AAGAGTTTCAGTTTGAGGGG+GGG 0.651609 3_1:-44706271 Msa0358860:three_prime_UTR
ACTATTTGGTGAATCAAACT+GGG 0.660675 3_1:-44706440 Msa0358860:CDS
ATATCTTGAAGTTATAGTGG+AGG 0.664498 3_1:+44707534 None:intergenic
GAAAGTGTTGGATATTTACG+AGG 0.669038 3_1:-44706538 Msa0358860:CDS
GCAGAAAAGTACAAGAACCA+AGG 0.682353 3_1:-44706738 Msa0358860:CDS
GGAAACATGTGAGTGCATGG+TGG 0.712862 3_1:-44706395 Msa0358860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAGTTGAATAAAATTGA+AGG + chr3_1:44706363-44706382 None:intergenic 15.0%
!!! TTGGATTATATTTTAAACTT+TGG - chr3_1:44706556-44706575 Msa0358860:CDS 15.0%
!!! ATTAAGTTGAATAAAATTGA+AGG + chr3_1:44706363-44706382 None:intergenic 15.0%
!!! TTGGATTATATTTTAAACTT+TGG - chr3_1:44706556-44706575 Msa0358860:CDS 15.0%
!! AAATTGCAGAAAATAGTAAA+GGG + chr3_1:44706500-44706519 None:intergenic 20.0%
!! AAAATTGCAGAAAATAGTAA+AGG + chr3_1:44706501-44706520 None:intergenic 20.0%
!!! TATATTTTAAACTTTGGATC+AGG - chr3_1:44706562-44706581 Msa0358860:CDS 20.0%
!!! ATATTTTAAACTTTGGATCA+GGG - chr3_1:44706563-44706582 Msa0358860:CDS 20.0%
!!! CAAATTTTATTACTGAAATC+AGG + chr3_1:44707518-44707537 None:intergenic 20.0%
!! CAGTAATAAAATTTGATGTT+TGG - chr3_1:44707523-44707542 Msa0358860:five_prime_UTR 20.0%
!! AAATTGCAGAAAATAGTAAA+GGG + chr3_1:44706500-44706519 None:intergenic 20.0%
!! AAAATTGCAGAAAATAGTAA+AGG + chr3_1:44706501-44706520 None:intergenic 20.0%
!!! TATATTTTAAACTTTGGATC+AGG - chr3_1:44706562-44706581 Msa0358860:CDS 20.0%
!!! ATATTTTAAACTTTGGATCA+GGG - chr3_1:44706563-44706582 Msa0358860:CDS 20.0%
!!! CAAATTTTATTACTGAAATC+AGG + chr3_1:44707518-44707537 None:intergenic 20.0%
!! CAGTAATAAAATTTGATGTT+TGG - chr3_1:44707523-44707542 Msa0358860:five_prime_UTR 20.0%
! TCAATATCTTGAAGTTATAG+TGG + chr3_1:44706119-44706138 None:intergenic 25.0%
! AGATAATGATTGTTTAAGCT+AGG + chr3_1:44706739-44706758 None:intergenic 25.0%
! AGCTTAAACAATCATTATCT+AGG - chr3_1:44706739-44706758 Msa0358860:CDS 25.0%
!!! AAACGAATTTTTCAGAATCT+CGG - chr3_1:44706868-44706887 Msa0358860:intron 25.0%
! TATATAAATACCCAGTGTAA+TGG - chr3_1:44707318-44707337 Msa0358860:intron 25.0%
!! TCAAACTGAAACTCTTATTT+GGG + chr3_1:44707372-44707391 None:intergenic 25.0%
! AAATAAGAGTTTCAGTTTGA+GGG - chr3_1:44707372-44707391 Msa0358860:CDS 25.0%
!! ACAGAAACATACATATGTTT+TGG + chr3_1:44707491-44707510 None:intergenic 25.0%
! TCAATATCTTGAAGTTATAG+TGG + chr3_1:44706119-44706138 None:intergenic 25.0%
! AGATAATGATTGTTTAAGCT+AGG + chr3_1:44706739-44706758 None:intergenic 25.0%
! AGCTTAAACAATCATTATCT+AGG - chr3_1:44706739-44706758 Msa0358860:CDS 25.0%
!!! AAACGAATTTTTCAGAATCT+CGG - chr3_1:44706868-44706887 Msa0358860:intron 25.0%
! TATATAAATACCCAGTGTAA+TGG - chr3_1:44707318-44707337 Msa0358860:intron 25.0%
!! TCAAACTGAAACTCTTATTT+GGG + chr3_1:44707372-44707391 None:intergenic 25.0%
! AAATAAGAGTTTCAGTTTGA+GGG - chr3_1:44707372-44707391 Msa0358860:CDS 25.0%
!! ACAGAAACATACATATGTTT+TGG + chr3_1:44707491-44707510 None:intergenic 25.0%
ATATCTTGAAGTTATAGTGG+AGG + chr3_1:44706116-44706135 None:intergenic 30.0%
! TTTTCAGAGACAAAAGATTC+AGG + chr3_1:44706184-44706203 None:intergenic 30.0%
!! ATCTTTTGTCTCTGAAAACA+TGG - chr3_1:44706186-44706205 Msa0358860:three_prime_UTR 30.0%
AACATGGTTGTGAAAGTTTA+CGG - chr3_1:44706202-44706221 Msa0358860:three_prime_UTR 30.0%
TGTTGATATTGATCTCTTCA+AGG - chr3_1:44706291-44706310 Msa0358860:three_prime_UTR 30.0%
GTTGATATTGATCTCTTCAA+GGG - chr3_1:44706292-44706311 Msa0358860:three_prime_UTR 30.0%
AAACACATGAATCAGGATAA+GGG + chr3_1:44706646-44706665 None:intergenic 30.0%
AAAACACATGAATCAGGATA+AGG + chr3_1:44706647-44706666 None:intergenic 30.0%
!!! CTGATTCATGTGTTTTTAGA+GGG - chr3_1:44706651-44706670 Msa0358860:CDS 30.0%
TGGTTAATCATCTTCACTTA+AGG - chr3_1:44706682-44706701 Msa0358860:CDS 30.0%
TCTAGGCTTAATTTATCTCT+CGG - chr3_1:44706756-44706775 Msa0358860:CDS 30.0%
TATCACTCGATTCATACTAA+TGG - chr3_1:44706836-44706855 Msa0358860:intron 30.0%
!! AACGAATTTTTCAGAATCTC+GGG - chr3_1:44706869-44706888 Msa0358860:intron 30.0%
TACTGTCTTTCCTAACAAAT+CGG + chr3_1:44706937-44706956 None:intergenic 30.0%
! ACTATTTGGTGAATCAAACT+GGG - chr3_1:44707207-44707226 Msa0358860:CDS 30.0%
ACAAACAAAACCATTACACT+GGG + chr3_1:44707331-44707350 None:intergenic 30.0%
! CAAACTGAAACTCTTATTTG+GGG + chr3_1:44707371-44707390 None:intergenic 30.0%
CTCAAACTGAAACTCTTATT+TGG + chr3_1:44707373-44707392 None:intergenic 30.0%
CAAATAAGAGTTTCAGTTTG+AGG - chr3_1:44707371-44707390 Msa0358860:CDS 30.0%
AATAAGAGTTTCAGTTTGAG+GGG - chr3_1:44707373-44707392 Msa0358860:CDS 30.0%
! AAAATGTTTGCTTTCTAGTG+TGG - chr3_1:44707435-44707454 Msa0358860:CDS 30.0%
! TGTTCTAGACAATATGTTGT+AGG - chr3_1:44707460-44707479 Msa0358860:exon 30.0%
ATATCTTGAAGTTATAGTGG+AGG + chr3_1:44706116-44706135 None:intergenic 30.0%
! TTTTCAGAGACAAAAGATTC+AGG + chr3_1:44706184-44706203 None:intergenic 30.0%
!! ATCTTTTGTCTCTGAAAACA+TGG - chr3_1:44706186-44706205 Msa0358860:three_prime_UTR 30.0%
AACATGGTTGTGAAAGTTTA+CGG - chr3_1:44706202-44706221 Msa0358860:three_prime_UTR 30.0%
TGTTGATATTGATCTCTTCA+AGG - chr3_1:44706291-44706310 Msa0358860:three_prime_UTR 30.0%
GTTGATATTGATCTCTTCAA+GGG - chr3_1:44706292-44706311 Msa0358860:three_prime_UTR 30.0%
AAACACATGAATCAGGATAA+GGG + chr3_1:44706646-44706665 None:intergenic 30.0%
AAAACACATGAATCAGGATA+AGG + chr3_1:44706647-44706666 None:intergenic 30.0%
!!! CTGATTCATGTGTTTTTAGA+GGG - chr3_1:44706651-44706670 Msa0358860:CDS 30.0%
TGGTTAATCATCTTCACTTA+AGG - chr3_1:44706682-44706701 Msa0358860:CDS 30.0%
TCTAGGCTTAATTTATCTCT+CGG - chr3_1:44706756-44706775 Msa0358860:CDS 30.0%
TATCACTCGATTCATACTAA+TGG - chr3_1:44706836-44706855 Msa0358860:intron 30.0%
!! AACGAATTTTTCAGAATCTC+GGG - chr3_1:44706869-44706888 Msa0358860:intron 30.0%
TACTGTCTTTCCTAACAAAT+CGG + chr3_1:44706937-44706956 None:intergenic 30.0%
! ACTATTTGGTGAATCAAACT+GGG - chr3_1:44707207-44707226 Msa0358860:CDS 30.0%
ACAAACAAAACCATTACACT+GGG + chr3_1:44707331-44707350 None:intergenic 30.0%
! CAAACTGAAACTCTTATTTG+GGG + chr3_1:44707371-44707390 None:intergenic 30.0%
CTCAAACTGAAACTCTTATT+TGG + chr3_1:44707373-44707392 None:intergenic 30.0%
CAAATAAGAGTTTCAGTTTG+AGG - chr3_1:44707371-44707390 Msa0358860:CDS 30.0%
AATAAGAGTTTCAGTTTGAG+GGG - chr3_1:44707373-44707392 Msa0358860:CDS 30.0%
! AAAATGTTTGCTTTCTAGTG+TGG - chr3_1:44707435-44707454 Msa0358860:CDS 30.0%
! TGTTCTAGACAATATGTTGT+AGG - chr3_1:44707460-44707479 Msa0358860:exon 30.0%
!! GTTGGTATGTCTTTTTGAGA+AGG - chr3_1:44706252-44706271 Msa0358860:three_prime_UTR 35.0%
AACCTGCAGTTTGAGAAAAT+CGG + chr3_1:44706332-44706351 None:intergenic 35.0%
GCTGAAAATACAAGAGACAT+AGG + chr3_1:44706415-44706434 None:intergenic 35.0%
! CTCTTGTATTTTCAGCCTTT+TGG - chr3_1:44706419-44706438 Msa0358860:CDS 35.0%
TAATCACCATCTTGAACAAG+AGG + chr3_1:44706452-44706471 None:intergenic 35.0%
AAAATAGTAAAGGGATGAGG+TGG + chr3_1:44706491-44706510 None:intergenic 35.0%
CAGAAAATAGTAAAGGGATG+AGG + chr3_1:44706494-44706513 None:intergenic 35.0%
! CTGATTGGTGATTTACTGAT+TGG - chr3_1:44706537-44706556 Msa0358860:CDS 35.0%
! CAGGGTGTTACATTTAATTG+AGG - chr3_1:44706581-44706600 Msa0358860:CDS 35.0%
! CCTCTAAAAACACATGAATC+AGG + chr3_1:44706653-44706672 None:intergenic 35.0%
!!! CCTGATTCATGTGTTTTTAG+AGG - chr3_1:44706650-44706669 Msa0358860:CDS 35.0%
!! GTTTTTAGAGGGTAATCAAG+TGG - chr3_1:44706662-44706681 Msa0358860:CDS 35.0%
TAGGAAAGACAGTAGAAGAA+AGG - chr3_1:44706943-44706962 Msa0358860:intron 35.0%
AGGAAAGACAGTAGAAGAAA+GGG - chr3_1:44706944-44706963 Msa0358860:intron 35.0%
! TGAAAAGCTGAAGAAAGTGT+TGG - chr3_1:44707097-44707116 Msa0358860:intron 35.0%
!! GAAAGTGTTGGATATTTACG+AGG - chr3_1:44707109-44707128 Msa0358860:intron 35.0%
TGTTGGATATTTACGAGGAA+AGG - chr3_1:44707114-44707133 Msa0358860:intron 35.0%
AATAGTGACCAAATGCAAGA+TGG + chr3_1:44707193-44707212 None:intergenic 35.0%
TCTTGCATTTGGTCACTATT+TGG - chr3_1:44707193-44707212 Msa0358860:CDS 35.0%
! CACTATTTGGTGAATCAAAC+TGG - chr3_1:44707206-44707225 Msa0358860:CDS 35.0%
CACAAACAAAACCATTACAC+TGG + chr3_1:44707332-44707351 None:intergenic 35.0%
ATAAGAGTTTCAGTTTGAGG+GGG - chr3_1:44707374-44707393 Msa0358860:CDS 35.0%
!! GTTGGTATGTCTTTTTGAGA+AGG - chr3_1:44706252-44706271 Msa0358860:three_prime_UTR 35.0%
AACCTGCAGTTTGAGAAAAT+CGG + chr3_1:44706332-44706351 None:intergenic 35.0%
GCTGAAAATACAAGAGACAT+AGG + chr3_1:44706415-44706434 None:intergenic 35.0%
! CTCTTGTATTTTCAGCCTTT+TGG - chr3_1:44706419-44706438 Msa0358860:CDS 35.0%
TAATCACCATCTTGAACAAG+AGG + chr3_1:44706452-44706471 None:intergenic 35.0%
AAAATAGTAAAGGGATGAGG+TGG + chr3_1:44706491-44706510 None:intergenic 35.0%
CAGAAAATAGTAAAGGGATG+AGG + chr3_1:44706494-44706513 None:intergenic 35.0%
! CTGATTGGTGATTTACTGAT+TGG - chr3_1:44706537-44706556 Msa0358860:CDS 35.0%
! CAGGGTGTTACATTTAATTG+AGG - chr3_1:44706581-44706600 Msa0358860:CDS 35.0%
! CCTCTAAAAACACATGAATC+AGG + chr3_1:44706653-44706672 None:intergenic 35.0%
!!! CCTGATTCATGTGTTTTTAG+AGG - chr3_1:44706650-44706669 Msa0358860:CDS 35.0%
!! GTTTTTAGAGGGTAATCAAG+TGG - chr3_1:44706662-44706681 Msa0358860:CDS 35.0%
TAGGAAAGACAGTAGAAGAA+AGG - chr3_1:44706943-44706962 Msa0358860:intron 35.0%
AGGAAAGACAGTAGAAGAAA+GGG - chr3_1:44706944-44706963 Msa0358860:intron 35.0%
! TGAAAAGCTGAAGAAAGTGT+TGG - chr3_1:44707097-44707116 Msa0358860:intron 35.0%
!! GAAAGTGTTGGATATTTACG+AGG - chr3_1:44707109-44707128 Msa0358860:intron 35.0%
TGTTGGATATTTACGAGGAA+AGG - chr3_1:44707114-44707133 Msa0358860:intron 35.0%
AATAGTGACCAAATGCAAGA+TGG + chr3_1:44707193-44707212 None:intergenic 35.0%
TCTTGCATTTGGTCACTATT+TGG - chr3_1:44707193-44707212 Msa0358860:CDS 35.0%
! CACTATTTGGTGAATCAAAC+TGG - chr3_1:44707206-44707225 Msa0358860:CDS 35.0%
CACAAACAAAACCATTACAC+TGG + chr3_1:44707332-44707351 None:intergenic 35.0%
ATAAGAGTTTCAGTTTGAGG+GGG - chr3_1:44707374-44707393 Msa0358860:CDS 35.0%
TAGTGGAGGTAAGTGGAAAA+AGG + chr3_1:44706102-44706121 None:intergenic 40.0%
! GAAGTTATAGTGGAGGTAAG+TGG + chr3_1:44706109-44706128 None:intergenic 40.0%
AGCCTATGGTTCTCCAAAAA+GGG - chr3_1:44706228-44706247 Msa0358860:three_prime_UTR 40.0%
! AGACATACCAACACCCTTTT+TGG + chr3_1:44706244-44706263 None:intergenic 40.0%
!! GGTATGTCTTTTTGAGAAGG+AGG - chr3_1:44706255-44706274 Msa0358860:three_prime_UTR 40.0%
ACCTGCAGTTTGAGAAAATC+GGG + chr3_1:44706331-44706350 None:intergenic 40.0%
!! GTATTTTCAGCCTTTTGGAG+AGG - chr3_1:44706424-44706443 Msa0358860:CDS 40.0%
GATGGTGATTATACCCTCTA+TGG - chr3_1:44706461-44706480 Msa0358860:CDS 40.0%
TGTGCTGTGTAGTTACTGAT+TGG - chr3_1:44706522-44706541 Msa0358860:CDS 40.0%
GGCTGAACTTAGAATTACCA+AGG - chr3_1:44706777-44706796 Msa0358860:intron 40.0%
! GCAGAAAAGTACAAGAACCA+AGG - chr3_1:44706909-44706928 Msa0358860:intron 40.0%
!! AACCAAGGAACCGATTTGTT+AGG - chr3_1:44706924-44706943 Msa0358860:intron 40.0%
! TTCCTAACAAATCGGTTCCT+TGG + chr3_1:44706929-44706948 None:intergenic 40.0%
GGAAAGACAGTAGAAGAAAG+GGG - chr3_1:44706945-44706964 Msa0358860:intron 40.0%
TGTTCTGTTTGCACCGTTAA+AGG - chr3_1:44707037-44707056 Msa0358860:intron 40.0%
GTTCTGTTTGCACCGTTAAA+GGG - chr3_1:44707038-44707057 Msa0358860:intron 40.0%
! TTCAATCACTTTCTGGTCAC+CGG + chr3_1:44707069-44707088 None:intergenic 40.0%
CACTCTCTTCAATCACTTTC+TGG + chr3_1:44707076-44707095 None:intergenic 40.0%
! GCTCTCAAAGACAAAGTACT+TGG - chr3_1:44707136-44707155 Msa0358860:intron 40.0%
! TCAAAGACAAAGTACTTGGC+TGG - chr3_1:44707140-44707159 Msa0358860:intron 40.0%
GATCTTAGCCATCTTGCATT+TGG - chr3_1:44707182-44707201 Msa0358860:intron 40.0%
TCAAACTGGGAGAGGAAATT+TGG - chr3_1:44707220-44707239 Msa0358860:intron 40.0%
GAGGAAATTTGGTTAGAGAG+AGG - chr3_1:44707231-44707250 Msa0358860:intron 40.0%
ATATTAGTAGCAGGCCATCT+TGG - chr3_1:44707279-44707298 Msa0358860:intron 40.0%
TCAAGAACCTTCTTCCAAGA+TGG + chr3_1:44707296-44707315 None:intergenic 40.0%
TAAGAGTTTCAGTTTGAGGG+GGG - chr3_1:44707375-44707394 Msa0358860:CDS 40.0%
TAGTGGAGGTAAGTGGAAAA+AGG + chr3_1:44706102-44706121 None:intergenic 40.0%
! GAAGTTATAGTGGAGGTAAG+TGG + chr3_1:44706109-44706128 None:intergenic 40.0%
AGCCTATGGTTCTCCAAAAA+GGG - chr3_1:44706228-44706247 Msa0358860:three_prime_UTR 40.0%
! AGACATACCAACACCCTTTT+TGG + chr3_1:44706244-44706263 None:intergenic 40.0%
!! GGTATGTCTTTTTGAGAAGG+AGG - chr3_1:44706255-44706274 Msa0358860:three_prime_UTR 40.0%
ACCTGCAGTTTGAGAAAATC+GGG + chr3_1:44706331-44706350 None:intergenic 40.0%
!! GTATTTTCAGCCTTTTGGAG+AGG - chr3_1:44706424-44706443 Msa0358860:CDS 40.0%
GATGGTGATTATACCCTCTA+TGG - chr3_1:44706461-44706480 Msa0358860:CDS 40.0%
TGTGCTGTGTAGTTACTGAT+TGG - chr3_1:44706522-44706541 Msa0358860:CDS 40.0%
GGCTGAACTTAGAATTACCA+AGG - chr3_1:44706777-44706796 Msa0358860:intron 40.0%
! GCAGAAAAGTACAAGAACCA+AGG - chr3_1:44706909-44706928 Msa0358860:intron 40.0%
!! AACCAAGGAACCGATTTGTT+AGG - chr3_1:44706924-44706943 Msa0358860:intron 40.0%
! TTCCTAACAAATCGGTTCCT+TGG + chr3_1:44706929-44706948 None:intergenic 40.0%
GGAAAGACAGTAGAAGAAAG+GGG - chr3_1:44706945-44706964 Msa0358860:intron 40.0%
TGTTCTGTTTGCACCGTTAA+AGG - chr3_1:44707037-44707056 Msa0358860:intron 40.0%
GTTCTGTTTGCACCGTTAAA+GGG - chr3_1:44707038-44707057 Msa0358860:intron 40.0%
! TTCAATCACTTTCTGGTCAC+CGG + chr3_1:44707069-44707088 None:intergenic 40.0%
CACTCTCTTCAATCACTTTC+TGG + chr3_1:44707076-44707095 None:intergenic 40.0%
! GCTCTCAAAGACAAAGTACT+TGG - chr3_1:44707136-44707155 Msa0358860:intron 40.0%
! TCAAAGACAAAGTACTTGGC+TGG - chr3_1:44707140-44707159 Msa0358860:intron 40.0%
GATCTTAGCCATCTTGCATT+TGG - chr3_1:44707182-44707201 Msa0358860:intron 40.0%
TCAAACTGGGAGAGGAAATT+TGG - chr3_1:44707220-44707239 Msa0358860:intron 40.0%
GAGGAAATTTGGTTAGAGAG+AGG - chr3_1:44707231-44707250 Msa0358860:intron 40.0%
ATATTAGTAGCAGGCCATCT+TGG - chr3_1:44707279-44707298 Msa0358860:intron 40.0%
TCAAGAACCTTCTTCCAAGA+TGG + chr3_1:44707296-44707315 None:intergenic 40.0%
TAAGAGTTTCAGTTTGAGGG+GGG - chr3_1:44707375-44707394 Msa0358860:CDS 40.0%
AAAGTTTACGGACCAGCCTA+TGG - chr3_1:44706214-44706233 Msa0358860:three_prime_UTR 45.0%
!! CTTTTTGGAGAACCATAGGC+TGG + chr3_1:44706229-44706248 None:intergenic 45.0%
CAGCCTATGGTTCTCCAAAA+AGG - chr3_1:44706227-44706246 Msa0358860:three_prime_UTR 45.0%
!! CACCCTTTTTGGAGAACCAT+AGG + chr3_1:44706233-44706252 None:intergenic 45.0%
! TGGTTCTCCAAAAAGGGTGT+TGG - chr3_1:44706234-44706253 Msa0358860:three_prime_UTR 45.0%
! ACCCGATTTTCTCAAACTGC+AGG - chr3_1:44706327-44706346 Msa0358860:exon 45.0%
ACAAGAGGAACCTCTCCAAA+AGG + chr3_1:44706437-44706456 None:intergenic 45.0%
GAGGTTCCTCTTGTTCAAGA+TGG - chr3_1:44706443-44706462 Msa0358860:CDS 45.0%
ATGAGGTGGCTAACCATAGA+GGG + chr3_1:44706477-44706496 None:intergenic 45.0%
TTATAACCCTCTCGTTCCCA+TGG + chr3_1:44706810-44706829 None:intergenic 45.0%
AGTAGAAGAAAGGGGACTTG+TGG - chr3_1:44706953-44706972 Msa0358860:intron 45.0%
AAAGGGGACTTGTGGAACAA+TGG - chr3_1:44706961-44706980 Msa0358860:intron 45.0%
TGTGGAACAATGGCTTGAAG+TGG - chr3_1:44706971-44706990 Msa0358860:intron 45.0%
TGACCAAGCTGTAGATTGCT+GGG + chr3_1:44707013-44707032 None:intergenic 45.0%
ATGACCAAGCTGTAGATTGC+TGG + chr3_1:44707014-44707033 None:intergenic 45.0%
!! TCACCGGTTTCACCCTTTAA+CGG + chr3_1:44707053-44707072 None:intergenic 45.0%
TTGGTGAATCAAACTGGGAG+AGG - chr3_1:44707212-44707231 Msa0358860:CDS 45.0%
AGAGGAAACATGTGAGTGCA+TGG - chr3_1:44707249-44707268 Msa0358860:intron 45.0%
GAAACATGTGAGTGCATGGT+GGG - chr3_1:44707253-44707272 Msa0358860:intron 45.0%
GGTGGGATGATATTAGTAGC+AGG - chr3_1:44707270-44707289 Msa0358860:intron 45.0%
AAGAGTTTCAGTTTGAGGGG+GGG - chr3_1:44707376-44707395 Msa0358860:CDS 45.0%
AAAGTTTACGGACCAGCCTA+TGG - chr3_1:44706214-44706233 Msa0358860:three_prime_UTR 45.0%
!! CTTTTTGGAGAACCATAGGC+TGG + chr3_1:44706229-44706248 None:intergenic 45.0%
CAGCCTATGGTTCTCCAAAA+AGG - chr3_1:44706227-44706246 Msa0358860:three_prime_UTR 45.0%
!! CACCCTTTTTGGAGAACCAT+AGG + chr3_1:44706233-44706252 None:intergenic 45.0%
! TGGTTCTCCAAAAAGGGTGT+TGG - chr3_1:44706234-44706253 Msa0358860:three_prime_UTR 45.0%
! ACCCGATTTTCTCAAACTGC+AGG - chr3_1:44706327-44706346 Msa0358860:exon 45.0%
ACAAGAGGAACCTCTCCAAA+AGG + chr3_1:44706437-44706456 None:intergenic 45.0%
GAGGTTCCTCTTGTTCAAGA+TGG - chr3_1:44706443-44706462 Msa0358860:CDS 45.0%
ATGAGGTGGCTAACCATAGA+GGG + chr3_1:44706477-44706496 None:intergenic 45.0%
TTATAACCCTCTCGTTCCCA+TGG + chr3_1:44706810-44706829 None:intergenic 45.0%
AGTAGAAGAAAGGGGACTTG+TGG - chr3_1:44706953-44706972 Msa0358860:intron 45.0%
AAAGGGGACTTGTGGAACAA+TGG - chr3_1:44706961-44706980 Msa0358860:intron 45.0%
TGTGGAACAATGGCTTGAAG+TGG - chr3_1:44706971-44706990 Msa0358860:intron 45.0%
TGACCAAGCTGTAGATTGCT+GGG + chr3_1:44707013-44707032 None:intergenic 45.0%
ATGACCAAGCTGTAGATTGC+TGG + chr3_1:44707014-44707033 None:intergenic 45.0%
!! TCACCGGTTTCACCCTTTAA+CGG + chr3_1:44707053-44707072 None:intergenic 45.0%
TTGGTGAATCAAACTGGGAG+AGG - chr3_1:44707212-44707231 Msa0358860:CDS 45.0%
AGAGGAAACATGTGAGTGCA+TGG - chr3_1:44707249-44707268 Msa0358860:intron 45.0%
GAAACATGTGAGTGCATGGT+GGG - chr3_1:44707253-44707272 Msa0358860:intron 45.0%
GGTGGGATGATATTAGTAGC+AGG - chr3_1:44707270-44707289 Msa0358860:intron 45.0%
AAGAGTTTCAGTTTGAGGGG+GGG - chr3_1:44707376-44707395 Msa0358860:CDS 45.0%
GATGAGGTGGCTAACCATAG+AGG + chr3_1:44706478-44706497 None:intergenic 50.0%
GGGAAGCAAAGATGCATGCA+GGG + chr3_1:44706626-44706645 None:intergenic 50.0%
AGGGAAGCAAAGATGCATGC+AGG + chr3_1:44706627-44706646 None:intergenic 50.0%
! ATTACCAAGGCCGCTTTCCA+TGG - chr3_1:44706790-44706809 Msa0358860:intron 50.0%
! TTACCAAGGCCGCTTTCCAT+GGG - chr3_1:44706791-44706810 Msa0358860:intron 50.0%
TCACCCAGCAATCTACAGCT+TGG - chr3_1:44707007-44707026 Msa0358860:intron 50.0%
GCACCGTTAAAGGGTGAAAC+CGG - chr3_1:44707047-44707066 Msa0358860:intron 50.0%
GGAAACATGTGAGTGCATGG+TGG - chr3_1:44707252-44707271 Msa0358860:intron 50.0%
TAGCAGGCCATCTTGGAAGA+AGG - chr3_1:44707286-44707305 Msa0358860:intron 50.0%
AGAGTTTCAGTTTGAGGGGG+GGG - chr3_1:44707377-44707396 Msa0358860:CDS 50.0%
GATGAGGTGGCTAACCATAG+AGG + chr3_1:44706478-44706497 None:intergenic 50.0%
GGGAAGCAAAGATGCATGCA+GGG + chr3_1:44706626-44706645 None:intergenic 50.0%
AGGGAAGCAAAGATGCATGC+AGG + chr3_1:44706627-44706646 None:intergenic 50.0%
! ATTACCAAGGCCGCTTTCCA+TGG - chr3_1:44706790-44706809 Msa0358860:intron 50.0%
! TTACCAAGGCCGCTTTCCAT+GGG - chr3_1:44706791-44706810 Msa0358860:intron 50.0%
TCACCCAGCAATCTACAGCT+TGG - chr3_1:44707007-44707026 Msa0358860:intron 50.0%
GCACCGTTAAAGGGTGAAAC+CGG - chr3_1:44707047-44707066 Msa0358860:intron 50.0%
GGAAACATGTGAGTGCATGG+TGG - chr3_1:44707252-44707271 Msa0358860:intron 50.0%
TAGCAGGCCATCTTGGAAGA+AGG - chr3_1:44707286-44707305 Msa0358860:intron 50.0%
AGAGTTTCAGTTTGAGGGGG+GGG - chr3_1:44707377-44707396 Msa0358860:CDS 50.0%
CCTCTCGTTCCCATGGAAAG+CGG + chr3_1:44706803-44706822 None:intergenic 55.0%
CGCTTTCCATGGGAACGAGA+GGG - chr3_1:44706801-44706820 Msa0358860:intron 55.0%
CCTCTCGTTCCCATGGAAAG+CGG + chr3_1:44706803-44706822 None:intergenic 55.0%
CGCTTTCCATGGGAACGAGA+GGG - chr3_1:44706801-44706820 Msa0358860:intron 55.0%
GTTCCCATGGAAAGCGGCCT+TGG + chr3_1:44706797-44706816 None:intergenic 60.0%
CCGCTTTCCATGGGAACGAG+AGG - chr3_1:44706800-44706819 Msa0358860:intron 60.0%
GTTCCCATGGAAAGCGGCCT+TGG + chr3_1:44706797-44706816 None:intergenic 60.0%
CCGCTTTCCATGGGAACGAG+AGG - chr3_1:44706800-44706819 Msa0358860:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 44706099 44707570 44706099 ID=Msa0358860;Name=Msa0358860
chr3_1 mRNA 44706099 44707570 44706099 ID=Msa0358860-mRNA-1;Parent=Msa0358860;Name=Msa0358860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=106|1|1|1|1|1|3|233|215
chr3_1 exon 44706099 44706786 44706099 ID=Msa0358860-mRNA-1:exon:7920;Parent=Msa0358860-mRNA-1
chr3_1 exon 44707187 44707235 44707187 ID=Msa0358860-mRNA-1:exon:7919;Parent=Msa0358860-mRNA-1
chr3_1 exon 44707321 44707570 44707321 ID=Msa0358860-mRNA-1:exon:7918;Parent=Msa0358860-mRNA-1
chr3_1 five_prime_UTR 44707465 44707570 44707465 ID=Msa0358860-mRNA-1:five_prime_utr;Parent=Msa0358860-mRNA-1
chr3_1 CDS 44707321 44707464 44707321 ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1 CDS 44707187 44707235 44707187 ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1 CDS 44706332 44706786 44706332 ID=Msa0358860-mRNA-1:cds;Parent=Msa0358860-mRNA-1
chr3_1 three_prime_UTR 44706099 44706331 44706099 ID=Msa0358860-mRNA-1:three_prime_utr;Parent=Msa0358860-mRNA-1
Gene Sequence

>Msa0358860

ATGGTTGTGAAAGTTTACGGACCAGCCTATGGTTCTCCAAAAAGGGTGTTGGTATGTCTTTTTGAGAAGGAGGTTGAGTTTGAAGCTGTTGATATTGATCTCTTCAAGGGAGAGCATAAACAACCCGATTTTCTCAAACTGCAGCCTTTTGGAGAGGTTCCTCTTGTTCAAGATGGTGATTATACCCTCTATGAATCTCGGGCAATAATCAGATACTATGCAGAAAAGTACAAGAACCAAGGAACCGATTTGTTAGGAAAGACAGTAGAAGAAAGGGGACTTGTGGAACAATGGCTTGAAGTGGAAGCACATAACTTTCACCCAGCAATCTACAGCTTGGTCATCAATGTTCTGTTTGCACCGTTAAAGGGTGAAACCGGTGACCAGAAAGTGATTGAAGAGAGTGATGAAAAGCTGAAGAAAGTGTTGGATATTTACGAGGAAAGGCTCTCAAAGACAAAGTACTTGGCTGGCGATTTCTTTAGTCTTGCTGATCTTAGCCATCTTGCATTTGGTCACTATTTGGTGAATCAAACTGGGAGAGGAAATTTGGTTAGAGAGAGGAAACATGTGAGTGCATGGTGGGATGATATTAGTAGCAGGCCATCTTGGAAGAAGGTTCTTGAACTATATAAATACCCAGTGTAA

Protein sequence

>Msa0358860

MVVKVYGPAYGSPKRVLVCLFEKEVEFEAVDIDLFKGEHKQPDFLKLQPFGEVPLVQDGDYTLYESRAIIRYYAEKYKNQGTDLLGKTVEERGLVEQWLEVEAHNFHPAIYSLVINVLFAPLKGETGDQKVIEESDEKLKKVLDIYEERLSKTKYLAGDFFSLADLSHLAFGHYLVNQTGRGNLVRERKHVSAWWDDISSRPSWKKVLELYKYPV*