AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872250 MtrunA17_Chr6g0453531 68.129 433 60 11 1 416 1 372 5.17e-132 384
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872250 AT3G29075.1 55.245 143 44 5 1 142 1 124 1.72e-33 127
Msa0872250 AT1G11440.1 56.000 50 22 0 3 52 117 166 1.64e-11 65.9

Find 210 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCCATATTCAGATTTC+TGG 0.035929 6_1:-7662185 None:intergenic
CTTTATTTAGTAGGTAATTA+TGG 0.163812 6_1:-7664725 None:intergenic
AGGAAGCAAGATTCTGAATT+TGG 0.188299 6_1:+7662066 Msa0872250:CDS
AGAGCAACATTAACCTATTA+AGG 0.236673 6_1:+7665080 Msa0872250:three_prime_UTR
AAGAATGAGGAAAGTGAATA+TGG 0.238375 6_1:+7662105 Msa0872250:CDS
AAGAATGAGGAAAGTGAATA+TGG 0.238375 6_1:+7662207 Msa0872250:CDS
CATAATTACCTACTAAATAA+AGG 0.239439 6_1:+7664726 Msa0872250:three_prime_UTR
CTGCTTATAACAAACTTCTT+TGG 0.255755 6_1:-7665016 None:intergenic
AGGAGGAGAGTGAGGGTTAT+GGG 0.265325 6_1:+7662256 Msa0872250:CDS
TGATATCTTCCTTTCTTGTT+TGG 0.267494 6_1:+7664763 Msa0872250:three_prime_UTR
TATGCTCAACCTTCTGCTTA+TGG 0.272182 6_1:+7661751 Msa0872250:CDS
GAGGAGGAGAGTGAGGGTTA+TGG 0.279009 6_1:+7662255 Msa0872250:CDS
CGATCTAGTACAACCTTAAT+AGG 0.291015 6_1:-7665093 None:intergenic
TGGTGGTGGTGGGGCTCAGG+AGG 0.292035 6_1:+7662017 Msa0872250:CDS
GGGGCCCAGGAGGGTGAATA+TGG 0.303637 6_1:+7661985 Msa0872250:CDS
GGGGCTCAGGAGGGTGAATA+TGG 0.303637 6_1:+7662027 Msa0872250:CDS
GGATCTGGGTATGGTGGTGG+TGG 0.312300 6_1:+7661964 Msa0872250:CDS
GGATCTGGGTATGGTGGTGG+TGG 0.312300 6_1:+7662006 Msa0872250:CDS
TCTTGAGCTTTCAGAACTAT+TGG 0.315272 6_1:+7664800 Msa0872250:three_prime_UTR
GGGGCCCAGAAATCTGAATA+TGG 0.319510 6_1:+7662180 Msa0872250:CDS
AGGAAGCAAGAGGGTGAATA+TGG 0.323037 6_1:+7661943 Msa0872250:CDS
AGGAAGCAAGAATCTGGATA+TGG 0.323483 6_1:+7662144 Msa0872250:CDS
GGGAGGAAGAAGAGTGGTTA+TGG 0.325487 6_1:+7662321 Msa0872250:CDS
TTACACTATTTCTCTCTGTT+TGG 0.329174 6_1:+7664891 Msa0872250:three_prime_UTR
GTATGGTGGTGGTGGGGCTC+AGG 0.334977 6_1:+7662014 Msa0872250:CDS
GAGGAAGAAGGGTATGGAGG+AGG 0.335243 6_1:+7662345 Msa0872250:CDS
CAAGATTCTGAATTTGGATC+TGG 0.338180 6_1:+7662072 Msa0872250:CDS
CAAGAATCTGAAATTGGATC+TGG 0.346947 6_1:+7661910 Msa0872250:CDS
GTGGTGGTGGTGGGTATGGG+AGG 0.347122 6_1:+7661863 Msa0872250:CDS
GTATGGTGGTGGTGGGGCCC+AGG 0.347593 6_1:+7661972 Msa0872250:CDS
AAACTAAATGTATTGCTGTT+TGG 0.348124 6_1:+7664826 Msa0872250:three_prime_UTR
TCTGGATATGGGTCAGGATA+TGG 0.350847 6_1:+7662156 Msa0872250:CDS
TCTCCCATATTCAGATTTCT+GGG 0.356239 6_1:-7662184 None:intergenic
TTTATTTAGTAGGTAATTAT+GGG 0.359554 6_1:-7664724 None:intergenic
AACACAACAACTCAAACATT+AGG 0.363929 6_1:-7664870 None:intergenic
TGGTGGTGGTGGGGCCCAGG+AGG 0.366945 6_1:+7661975 Msa0872250:CDS
GGTGGTCAAGAATCTGAAAT+TGG 0.368013 6_1:+7661904 Msa0872250:CDS
AGTGAATATGGGTCCGGTTA+TGG 0.374460 6_1:+7662117 Msa0872250:CDS
CTAGGAGCAGGTCTAGGTTT+AGG 0.380180 6_1:-7661814 None:intergenic
ATCTGGGTATGGTGGTGGTG+GGG 0.380832 6_1:+7661966 Msa0872250:CDS
GGAGGAAGAAGAGTGGTTAT+GGG 0.383424 6_1:+7662322 Msa0872250:CDS
TTGCTTCCTTCCACCATAAC+CGG 0.386323 6_1:-7662130 None:intergenic
GTTTCATCGGAAGGTGGAAT+TGG 0.386796 6_1:-7661667 None:intergenic
CAAGAGGGTGAATATGGATC+TGG 0.396904 6_1:+7661949 Msa0872250:CDS
GAGTCAACCCTTTATTTAGT+AGG 0.398541 6_1:-7664734 None:intergenic
GAGGAAAGTGAATATGGGTC+TGG 0.403504 6_1:+7662213 Msa0872250:CDS
ATCTGGGTATGGTGGTGGTG+GGG 0.404159 6_1:+7662008 Msa0872250:CDS
GGTGGAAGGAAGCAAGAATC+TGG 0.407062 6_1:+7662138 Msa0872250:CDS
ACACAACAACTCAAACATTA+GGG 0.410366 6_1:-7664869 None:intergenic
GGGGAGGAAGAAGGGTATGG+AGG 0.410870 6_1:+7662342 Msa0872250:CDS
GAGAGTGGTGGATCGGAGTA+TGG 0.413090 6_1:+7662294 Msa0872250:CDS
CAGGAGGGTGAATATGGATC+TGG 0.414879 6_1:+7662033 Msa0872250:CDS
CAAAGAAGTTTGTTATAAGC+AGG 0.415186 6_1:+7665017 Msa0872250:three_prime_UTR
CCTGAATCTGGTGGTGGTGG+TGG 0.415997 6_1:+7661847 Msa0872250:CDS
GATCTGGGTATGGTGGTGGT+GGG 0.416482 6_1:+7661965 Msa0872250:CDS
AGTGGTTATGGGGAGGAAGA+AGG 0.417130 6_1:+7662333 Msa0872250:CDS
TATGGATCTGGGTATGGTGG+TGG 0.422719 6_1:+7661961 Msa0872250:CDS
TATGGATCTGGGTATGGTGG+TGG 0.422719 6_1:+7662003 Msa0872250:CDS
GATCTGGGTATGGTGGTGGT+GGG 0.423527 6_1:+7662007 Msa0872250:CDS
AGGAAGAAGGGTATGGAGGA+GGG 0.425811 6_1:+7662346 Msa0872250:CDS
CAGGAGGGTGAATATGGATC+TGG 0.427850 6_1:+7661991 Msa0872250:CDS
TCTGAATTTGGATCTGGGTA+TGG 0.428612 6_1:+7662078 Msa0872250:CDS
AAAGAATGAGGAGGAGAGTG+AGG 0.433066 6_1:+7662248 Msa0872250:CDS
ATAATTACCTACTAAATAAA+GGG 0.436075 6_1:+7664727 Msa0872250:three_prime_UTR
AGTGAATATGGGTCTGGGTA+TGG 0.440801 6_1:+7662219 Msa0872250:CDS
GACTGTCGTTGCTGTTTGAA+TGG 0.441452 6_1:+7664694 Msa0872250:three_prime_UTR
GTGGTTATGGGGAGGAAGAA+GGG 0.452123 6_1:+7662334 Msa0872250:CDS
GGTGGTGGTGGGGCCCAGGA+GGG 0.455266 6_1:+7661976 Msa0872250:CDS
CAGATCCATATTCACCCTCC+TGG 0.458005 6_1:-7661990 None:intergenic
GAGGAGGAGAAGCCGAGCTA+TGG 0.460470 6_1:+7662462 Msa0872250:CDS
TATGGGAGGAAACAAGGATC+TGG 0.464076 6_1:+7661877 Msa0872250:CDS
CATCTGTGGGATGCATTAGC+AGG 0.466729 6_1:-7664950 None:intergenic
CTGAATTTGGATCTGGGTAT+GGG 0.471206 6_1:+7662079 Msa0872250:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.471950 6_1:+7662597 Msa0872250:CDS
GAGGAAGAAGAGTGGTTATG+GGG 0.472853 6_1:+7662323 Msa0872250:CDS
GAATATGGGTCTGGGTATGG+TGG 0.474948 6_1:+7662222 Msa0872250:CDS
GGTGGATCGGAGTATGGATC+GGG 0.478743 6_1:+7662300 Msa0872250:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.479965 6_1:+7662411 Msa0872250:CDS
TGAGCATAAGATTCAAATTG+AGG 0.480996 6_1:-7661736 None:intergenic
TACTTCACTCGTGGCGGAAA+CGG 0.482929 6_1:+7661562 Msa0872250:CDS
GGTGGTGGTGGGGCTCAGGA+GGG 0.488692 6_1:+7662018 Msa0872250:CDS
AGGAAAGTGAATATGGGTCT+GGG 0.488765 6_1:+7662214 Msa0872250:CDS
GATGAGGAGAAGCCAAGCTA+TGG 0.490330 6_1:+7662528 Msa0872250:CDS
GATGAAACATGTTACCCATC+AGG 0.490672 6_1:+7661682 Msa0872250:CDS
GGTGAATATGGATCTGGGTA+TGG 0.490996 6_1:+7661997 Msa0872250:CDS
GGTGAATATGGATCTGGGTA+TGG 0.490996 6_1:+7662039 Msa0872250:CDS
GAATATGGATCTGGGTATGG+TGG 0.492676 6_1:+7661958 Msa0872250:CDS
GAATATGGATCTGGGTATGG+TGG 0.492676 6_1:+7662000 Msa0872250:CDS
AGGAGGAGAAGCCGAGCTAT+GGG 0.492768 6_1:+7662463 Msa0872250:CDS
GAGGGAGGAGTGAGTATGAG+AGG 0.495733 6_1:+7662364 Msa0872250:CDS
CAAGAATCTGGATATGGGTC+AGG 0.495914 6_1:+7662150 Msa0872250:CDS
ATGGATCTGGGTATGGTGGA+AGG 0.498189 6_1:+7662046 Msa0872250:CDS
TGAGTATGAGAGTGGTGGAT+CGG 0.501641 6_1:+7662287 Msa0872250:CDS
TCATCACTCCTTCCATAGCT+AGG 0.506102 6_1:-7662507 None:intergenic
TCATCACTCCTTCCATAGCT+AGG 0.506102 6_1:-7662576 None:intergenic
TATGGGGAGGAAGAAGGGTA+TGG 0.507252 6_1:+7662339 Msa0872250:CDS
TACTCAGTCCTCCCATAGCT+CGG 0.510767 6_1:-7662474 None:intergenic
ATGAGGAGAAGCCGAGCTAT+GGG 0.513016 6_1:+7662598 Msa0872250:CDS
GAATATGGATCTGGGTATGG+TGG 0.514465 6_1:+7662042 Msa0872250:CDS
TCAGTAGTCCTCCCATAGCT+TGG 0.514716 6_1:-7662540 None:intergenic
ATGAGGAGAAGCCGAGCTAT+GGG 0.515456 6_1:+7662412 Msa0872250:CDS
TGGTGGATCGGAGTATGGAT+CGG 0.521545 6_1:+7662299 Msa0872250:CDS
CATCCTGAATCTGGTGGTGG+TGG 0.525129 6_1:+7661844 Msa0872250:CDS
GGTGAATATGGATCTGGGTA+TGG 0.528384 6_1:+7661955 Msa0872250:CDS
TCGTCACTCCTTCCATAGCT+AGG 0.528757 6_1:-7662390 None:intergenic
GATGATGATGATGAGGGATA+TGG 0.533909 6_1:+7662684 Msa0872250:CDS
ACCATGCAGGGAGGAGATGA+AGG 0.536404 6_1:+7664591 Msa0872250:intron
GAGGAAAGTGAATATGGGTC+CGG 0.536496 6_1:+7662111 Msa0872250:CDS
TAATATAGTCCAAACAAGAA+AGG 0.537089 6_1:-7664772 None:intergenic
AGGAAACAAGGATCTGGGTA+TGG 0.537850 6_1:+7661883 Msa0872250:CDS
CTTCCTCCCCTCATCATCAT+CGG 0.538297 6_1:-7664616 None:intergenic
GGTGGGTATGGGAGGAAACA+AGG 0.539324 6_1:+7661871 Msa0872250:CDS
AAGAATGAGTATGAGAGTGG+TGG 0.540072 6_1:+7662282 Msa0872250:CDS
AAACAAGCATGGTGCATCTG+TGG 0.541420 6_1:-7664964 None:intergenic
GGGCCCAGAAATCTGAATAT+GGG 0.541847 6_1:+7662181 Msa0872250:CDS
AATATGGGTCTGGGTATGGT+GGG 0.543254 6_1:+7662223 Msa0872250:CDS
GTTTGTTATAAGCAGGAGTG+AGG 0.544454 6_1:+7665024 Msa0872250:three_prime_UTR
AGAATGAGGAAAGTGAATAT+GGG 0.544489 6_1:+7662208 Msa0872250:CDS
TATGAGAGGAAGCCTAGCTA+TGG 0.544851 6_1:+7662378 Msa0872250:CDS
GGATATGGGTCAGGATATGG+TGG 0.546513 6_1:+7662159 Msa0872250:CDS
GGAAGCAAGAATCTGGATAT+GGG 0.547754 6_1:+7662145 Msa0872250:CDS
TATCCACCACCGTATGGTGT+TGG 0.548698 6_1:-7661619 None:intergenic
ATGAGGAGAAGCCAAGCTAT+GGG 0.551651 6_1:+7662529 Msa0872250:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.553310 6_1:+7662615 Msa0872250:CDS
AGAATGAGGAAAGTGAATAT+GGG 0.554359 6_1:+7662106 Msa0872250:CDS
AAGATTCTGAATTTGGATCT+GGG 0.554398 6_1:+7662073 Msa0872250:CDS
TTTCATCCTGAATCTGGTGG+TGG 0.554661 6_1:+7661841 Msa0872250:CDS
TGTTTGAATTTGATTACACC+TGG 0.555743 6_1:+7664917 Msa0872250:three_prime_UTR
AAATTGGATCTGGGTATGGT+GGG 0.556092 6_1:+7661920 Msa0872250:CDS
TTGGATCTGGGTATGGTGGG+AGG 0.557126 6_1:+7661923 Msa0872250:CDS
AAACCACTAGGAGCAGGTCT+AGG 0.558052 6_1:-7661820 None:intergenic
GGATGAAAACCACTAGGAGC+AGG 0.558809 6_1:-7661826 None:intergenic
GAATTGGTCTACCGTAGGTA+AGG 0.559097 6_1:-7661651 None:intergenic
TGAAGGCTCCGATGATGATG+AGG 0.563468 6_1:+7664608 Msa0872250:CDS
AGGAGAGTGAGGGTTATGGG+AGG 0.563885 6_1:+7662259 Msa0872250:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_1:+7662512 Msa0872250:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_1:+7662581 Msa0872250:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_1:+7662632 Msa0872250:CDS
TGGGTATGGGAGAAAGAATG+AGG 0.565655 6_1:+7662092 Msa0872250:CDS
TGAATATGGGAGAAAGAATG+AGG 0.565883 6_1:+7662194 Msa0872250:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.570080 6_1:+7662249 Msa0872250:CDS
GAAATTGGATCTGGGTATGG+TGG 0.570260 6_1:+7661919 Msa0872250:CDS
AAGAATCTGAAATTGGATCT+GGG 0.570455 6_1:+7661911 Msa0872250:CDS
GAAGGCTCCGATGATGATGA+GGG 0.571314 6_1:+7664609 Msa0872250:CDS
TATGAGAGGAAACCTAGCTA+TGG 0.572094 6_1:+7662495 Msa0872250:CDS
AGATCCATATTCACCCTCCT+GGG 0.572216 6_1:-7661989 None:intergenic
ACTCGTCATCATAACTCTTG+CGG 0.572679 6_1:-7664662 None:intergenic
ATGGGTCCGGTTATGGTGGA+AGG 0.574581 6_1:+7662124 Msa0872250:CDS
GATATGGGTCAGGATATGGT+GGG 0.574963 6_1:+7662160 Msa0872250:CDS
GGGTAACATGTTTCATCGGA+AGG 0.578559 6_1:-7661676 None:intergenic
GATGAGGAGAAACCGAGCTA+TGG 0.578916 6_1:+7662648 Msa0872250:CDS
GAAGAAGAGTGGTTATGGGG+AGG 0.579031 6_1:+7662326 Msa0872250:CDS
AGGAGGGTGAATATGGATCT+GGG 0.579400 6_1:+7662034 Msa0872250:CDS
TACGAGAGGAAACCTAGCTA+TGG 0.580456 6_1:+7662564 Msa0872250:CDS
AAGAGGGTGAATATGGATCT+GGG 0.581883 6_1:+7661950 Msa0872250:CDS
AGGAGGGTGAATATGGATCT+GGG 0.581883 6_1:+7661992 Msa0872250:CDS
AAGAAGGGTATGGAGGAGGG+AGG 0.581914 6_1:+7662349 Msa0872250:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.582880 6_1:+7662429 Msa0872250:CDS
TCTGAAATTGGATCTGGGTA+TGG 0.586258 6_1:+7661916 Msa0872250:CDS
TATGGTGGGAGGAAGCAAGA+GGG 0.587340 6_1:+7661934 Msa0872250:CDS
GATCCAACACCATACGGTGG+TGG 0.587938 6_1:+7661616 Msa0872250:CDS
CACCTCTCATAACCATAGCT+CGG 0.588671 6_1:-7662660 None:intergenic
GAATATGGGTCCGGTTATGG+TGG 0.593625 6_1:+7662120 Msa0872250:CDS
AATTAAATATTAAACAAGCA+TGG 0.599782 6_1:-7664975 None:intergenic
ATGGGAGGAAACAAGGATCT+GGG 0.600433 6_1:+7661878 Msa0872250:CDS
TACGACATTCACCTTACCTA+CGG 0.602527 6_1:+7661640 Msa0872250:CDS
ATGGGAGGACTGAGTATGAG+AGG 0.603391 6_1:+7662481 Msa0872250:CDS
ATGTCGTATCCACCACCGTA+TGG 0.603594 6_1:-7661625 None:intergenic
TGATGGGTAACATGTTTCAT+CGG 0.604030 6_1:-7661680 None:intergenic
GGAGGAAAACTAGCTATGGA+AGG 0.608209 6_1:+7662619 Msa0872250:CDS
GAATACGATCCAACACCATA+CGG 0.609449 6_1:+7661610 Msa0872250:CDS
AGAGGAAGCCTAGCTATGGA+AGG 0.611158 6_1:+7662382 Msa0872250:CDS
GTATGGTGGGAGAAAGAATG+AGG 0.613761 6_1:+7662236 Msa0872250:CDS
CGTCATCATAACTCTTGCGG+TGG 0.615697 6_1:-7664659 None:intergenic
AACAAGCATGGTGCATCTGT+GGG 0.617266 6_1:-7664963 None:intergenic
GTATGGTGGGAGGAAGCAAG+AGG 0.619865 6_1:+7661933 Msa0872250:CDS
TCTTGCGGTGGTGACTCTTG+TGG 0.620902 6_1:-7664647 None:intergenic
AGAGGAAACCTAGCTATGGA+AGG 0.622082 6_1:+7662499 Msa0872250:CDS
ATATGGGTCAGGATATGGTG+GGG 0.627503 6_1:+7662161 Msa0872250:CDS
TTAGCAGGCAATATCATACC+AGG 0.628023 6_1:-7664935 None:intergenic
CTATGGACGGAGTGATGAGG+AGG 0.628211 6_1:+7662446 Msa0872250:CDS
TGGTGGGAGAAAGAATGAGG+AGG 0.629744 6_1:+7662239 Msa0872250:CDS
AAACAAGGATCTGGGTATGG+TGG 0.631712 6_1:+7661886 Msa0872250:CDS
TAACATGTTTCATCGGAAGG+TGG 0.634933 6_1:-7661673 None:intergenic
CATTGTTTGATGAACCTGAT+GGG 0.635614 6_1:-7661696 None:intergenic
GCTTCATCACCATAAGCAGA+AGG 0.635872 6_1:-7661760 None:intergenic
AGAGGAAACCTAGCTATGGA+AGG 0.637235 6_1:+7662568 Msa0872250:CDS
CTATGGAAGGAGTGACGATG+AGG 0.639792 6_1:+7662395 Msa0872250:CDS
ATGTCATACTTCACTCGTGG+CGG 0.640823 6_1:+7661556 Msa0872250:CDS
AGGTGGAATTGGTCTACCGT+AGG 0.641004 6_1:-7661656 None:intergenic
AGGAAGAATGAGTATGAGAG+TGG 0.642217 6_1:+7662279 Msa0872250:CDS
AACCGAGCTATGGTTATGAG+AGG 0.643563 6_1:+7662658 Msa0872250:CDS
GGATCGGGGAGGAAGAAGAG+TGG 0.646806 6_1:+7662315 Msa0872250:CDS
TAGCTATGGACGGAGTGATG+AGG 0.653663 6_1:+7662443 Msa0872250:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.655067 6_1:+7662466 Msa0872250:CDS
GAGGTGTGATGATGATGATG+AGG 0.656869 6_1:+7662677 Msa0872250:CDS
GGAGGAAAACTAGCTATGGA+CGG 0.657547 6_1:+7662433 Msa0872250:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 6_1:+7662415 Msa0872250:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 6_1:+7662601 Msa0872250:CDS
GATTCAGGATGAAAACCACT+AGG 0.664066 6_1:-7661832 None:intergenic
GCTCCGATGATGATGAGGGG+AGG 0.668807 6_1:+7664613 Msa0872250:CDS
TCATTGTTTGATGAACCTGA+TGG 0.670564 6_1:-7661697 None:intergenic
AGGAGAAGCCAAGCTATGGG+AGG 0.672917 6_1:+7662532 Msa0872250:CDS
AAAATGTCATACTTCACTCG+TGG 0.675477 6_1:+7661553 None:intergenic
AAGGCTCCGATGATGATGAG+GGG 0.691166 6_1:+7664610 Msa0872250:CDS
GGAGGACTACTGAGTACGAG+AGG 0.692772 6_1:+7662550 Msa0872250:CDS
AAACCTAGACCTGCTCCTAG+TGG 0.693441 6_1:+7661817 Msa0872250:CDS
TACGATCCAACACCATACGG+TGG 0.709648 6_1:+7661613 Msa0872250:CDS
GTGGATCGGAGTATGGATCG+GGG 0.734380 6_1:+7662301 Msa0872250:CDS
GATCGGAGTATGGATCGGGG+AGG 0.756469 6_1:+7662304 Msa0872250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTGTTTTCATATATA+TGG + chr6_1:7662811-7662830 Msa0872250:intron 15.0%
!!! TATGTTGTTTTCATATATAT+GGG + chr6_1:7662812-7662831 Msa0872250:intron 15.0%
!! TGAATTAATAATCACAAAAT+TGG + chr6_1:7663016-7663035 Msa0872250:intron 15.0%
!! TACTCATAAATAATAATCAA+AGG - chr6_1:7663579-7663598 None:intergenic 15.0%
!! TAGAAGATTTAAGAAATTAA+AGG - chr6_1:7663604-7663623 None:intergenic 15.0%
!!! ATAAATCTTTGAAATTATCA+GGG + chr6_1:7663991-7664010 Msa0872250:intron 15.0%
!! TTTATTTAGTAGGTAATTAT+GGG - chr6_1:7664727-7664746 None:intergenic 15.0%
!! ATAATTACCTACTAAATAAA+GGG + chr6_1:7664727-7664746 Msa0872250:three_prime_UTR 15.0%
!! AATTAAATATTAAACAAGCA+TGG - chr6_1:7664978-7664997 None:intergenic 15.0%
!!! TATTCTTACTTATGGTTTTA+TGG + chr6_1:7662725-7662744 Msa0872250:intron 20.0%
!! TGTTTAATCTTCTAATTTAG+AGG + chr6_1:7662769-7662788 Msa0872250:intron 20.0%
!! CACTATAATAATGATTTATG+AGG - chr6_1:7663123-7663142 None:intergenic 20.0%
!! TACAGTTACAATTTAAAAAC+GGG - chr6_1:7663467-7663486 None:intergenic 20.0%
!! CTACAGTTACAATTTAAAAA+CGG - chr6_1:7663468-7663487 None:intergenic 20.0%
!!! TTCTTAAATCTTCTATTTTG+AGG + chr6_1:7663609-7663628 Msa0872250:intron 20.0%
!! AAGCTGTATATCATATATTA+CGG - chr6_1:7663793-7663812 None:intergenic 20.0%
!!! GATAAATCTTTGAAATTATC+AGG + chr6_1:7663990-7664009 Msa0872250:intron 20.0%
!!! TAAATCTTTGAAATTATCAG+GGG + chr6_1:7663992-7664011 Msa0872250:intron 20.0%
!!! AAGTCAAAACAATTTTGAAA+TGG - chr6_1:7664304-7664323 None:intergenic 20.0%
!!! CTTTATTTAGTAGGTAATTA+TGG - chr6_1:7664728-7664747 None:intergenic 20.0%
!! CATAATTACCTACTAAATAA+AGG + chr6_1:7664726-7664745 Msa0872250:three_prime_UTR 20.0%
! TATGTGAGTATTCTTACTTA+TGG + chr6_1:7662717-7662736 Msa0872250:intron 25.0%
! CTTTGAATTCTTGAGAAAAT+TGG + chr6_1:7663043-7663062 Msa0872250:intron 25.0%
! GTGTAATTATGTGAACTAAT+TGG + chr6_1:7663140-7663159 Msa0872250:intron 25.0%
!! ATGTGAACTAATTGGTAATT+TGG + chr6_1:7663148-7663167 Msa0872250:intron 25.0%
! TGCATAATAGCATTAGAATT+AGG - chr6_1:7663401-7663420 None:intergenic 25.0%
!!! ATTTTGAGGTTTAATGTGTA+TGG + chr6_1:7663623-7663642 Msa0872250:intron 25.0%
! TAGATATAATTGAGTTTGAG+TGG + chr6_1:7663912-7663931 Msa0872250:intron 25.0%
! AAAGATTTATCAGAGTAAGT+TGG - chr6_1:7663981-7664000 None:intergenic 25.0%
!!! CATTTACCTATTTTTCTTCT+CGG - chr6_1:7664137-7664156 None:intergenic 25.0%
! GAGAAGAAAAATAGGTAAAT+GGG + chr6_1:7664136-7664155 Msa0872250:intron 25.0%
!!! TCAAAATTGTTTTGACTTGT+TGG + chr6_1:7664306-7664325 Msa0872250:intron 25.0%
! CGATATATGGATTTAATGTT+TGG + chr6_1:7664401-7664420 Msa0872250:intron 25.0%
!! TTCCAACAATGTACATTTTA+TGG + chr6_1:7664502-7664521 Msa0872250:intron 25.0%
! ATCCATAAAATGTACATTGT+TGG - chr6_1:7664507-7664526 None:intergenic 25.0%
!! TACATTTTATGGATTTTGCA+AGG + chr6_1:7664513-7664532 Msa0872250:intron 25.0%
! TAATATAGTCCAAACAAGAA+AGG - chr6_1:7664775-7664794 None:intergenic 25.0%
!! AAACTAAATGTATTGCTGTT+TGG + chr6_1:7664826-7664845 Msa0872250:three_prime_UTR 25.0%
TGAGCATAAGATTCAAATTG+AGG - chr6_1:7661739-7661758 None:intergenic 30.0%
! AAGAATCTGAAATTGGATCT+GGG + chr6_1:7661911-7661930 Msa0872250:CDS 30.0%
AAGATTCTGAATTTGGATCT+GGG + chr6_1:7662073-7662092 Msa0872250:CDS 30.0%
AAGAATGAGGAAAGTGAATA+TGG + chr6_1:7662105-7662124 Msa0872250:CDS 30.0%
AGAATGAGGAAAGTGAATAT+GGG + chr6_1:7662106-7662125 Msa0872250:CDS 30.0%
AAGAATGAGGAAAGTGAATA+TGG + chr6_1:7662105-7662124 Msa0872250:CDS 30.0%
AGAATGAGGAAAGTGAATAT+GGG + chr6_1:7662106-7662125 Msa0872250:CDS 30.0%
TCAAACTCTATATCCTACTT+AGG - chr6_1:7662985-7663004 None:intergenic 30.0%
AGGTACATATAATATCAGAG+TGG - chr6_1:7663103-7663122 None:intergenic 30.0%
AAGTTTCACACAATTGTTGA+TGG + chr6_1:7663224-7663243 Msa0872250:intron 30.0%
! CAATTGTTGATGGAAATATG+TGG + chr6_1:7663234-7663253 Msa0872250:intron 30.0%
GATTGTTACTACAACCAATA+GGG - chr6_1:7663273-7663292 None:intergenic 30.0%
AGATTGTTACTACAACCAAT+AGG - chr6_1:7663274-7663293 None:intergenic 30.0%
TAGCATTAGAATTAGGCATT+AGG - chr6_1:7663394-7663413 None:intergenic 30.0%
AGAGTGAACAACTATAAGTT+GGG - chr6_1:7663534-7663553 None:intergenic 30.0%
GTTTAATGTGTATGGTACTA+TGG + chr6_1:7663631-7663650 Msa0872250:intron 30.0%
TGTGGTATGATTGAAGTTTA+GGG - chr6_1:7663677-7663696 None:intergenic 30.0%
ACTACATGATAGCTGATATA+CGG + chr6_1:7663696-7663715 Msa0872250:intron 30.0%
TATCAGTGTAGACAATAAAG+TGG - chr6_1:7663852-7663871 None:intergenic 30.0%
TAAAGAAATAATGCAGCTAG+CGG - chr6_1:7663890-7663909 None:intergenic 30.0%
! ATTTTTCTTCTCGGCAAATT+GGG - chr6_1:7664128-7664147 None:intergenic 30.0%
! TATTTTTCTTCTCGGCAAAT+TGG - chr6_1:7664129-7664148 None:intergenic 30.0%
AATTTGCCGAGAAGAAAAAT+AGG + chr6_1:7664128-7664147 Msa0872250:intron 30.0%
CGAGAAGAAAAATAGGTAAA+TGG + chr6_1:7664135-7664154 Msa0872250:intron 30.0%
GTGATAGAATGAATGAGAAT+GGG - chr6_1:7664185-7664204 None:intergenic 30.0%
AGTGATAGAATGAATGAGAA+TGG - chr6_1:7664186-7664205 None:intergenic 30.0%
ATGTACATTGTTGGAATGTT+AGG - chr6_1:7664498-7664517 None:intergenic 30.0%
TGATATCTTCCTTTCTTGTT+TGG + chr6_1:7664763-7664782 Msa0872250:three_prime_UTR 30.0%
ACACAACAACTCAAACATTA+GGG - chr6_1:7664872-7664891 None:intergenic 30.0%
AACACAACAACTCAAACATT+AGG - chr6_1:7664873-7664892 None:intergenic 30.0%
! TTACACTATTTCTCTCTGTT+TGG + chr6_1:7664891-7664910 Msa0872250:three_prime_UTR 30.0%
TGTTTGAATTTGATTACACC+TGG + chr6_1:7664917-7664936 Msa0872250:three_prime_UTR 30.0%
CTGCTTATAACAAACTTCTT+TGG - chr6_1:7665019-7665038 None:intergenic 30.0%
!! CAAAGAAGTTTGTTATAAGC+AGG + chr6_1:7665017-7665036 Msa0872250:three_prime_UTR 30.0%
AGAGCAACATTAACCTATTA+AGG + chr6_1:7665080-7665099 Msa0872250:three_prime_UTR 30.0%
! TGATGGGTAACATGTTTCAT+CGG - chr6_1:7661683-7661702 None:intergenic 35.0%
CATTGTTTGATGAACCTGAT+GGG - chr6_1:7661699-7661718 None:intergenic 35.0%
TCATTGTTTGATGAACCTGA+TGG - chr6_1:7661700-7661719 None:intergenic 35.0%
! CAAGAATCTGAAATTGGATC+TGG + chr6_1:7661910-7661929 Msa0872250:CDS 35.0%
AGGAAGCAAGATTCTGAATT+TGG + chr6_1:7662066-7662085 Msa0872250:CDS 35.0%
CAAGATTCTGAATTTGGATC+TGG + chr6_1:7662072-7662091 Msa0872250:CDS 35.0%
TCTCCCATATTCAGATTTCT+GGG - chr6_1:7662187-7662206 None:intergenic 35.0%
TTCTCCCATATTCAGATTTC+TGG - chr6_1:7662188-7662207 None:intergenic 35.0%
TGAATATGGGAGAAAGAATG+AGG + chr6_1:7662194-7662213 Msa0872250:CDS 35.0%
!! GAATATTTTTGCCCTTTGCT+AGG + chr6_1:7662857-7662876 Msa0872250:intron 35.0%
GATCATAAGATCCTAGCAAA+GGG - chr6_1:7662871-7662890 None:intergenic 35.0%
AGATCATAAGATCCTAGCAA+AGG - chr6_1:7662872-7662891 None:intergenic 35.0%
CTCTATATCCTACTTAGGAT+CGG - chr6_1:7662980-7662999 None:intergenic 35.0%
! AGTGAACAACTATAAGTTGG+GGG - chr6_1:7663532-7663551 None:intergenic 35.0%
GAGTGAACAACTATAAGTTG+GGG - chr6_1:7663533-7663552 None:intergenic 35.0%
CAGAGTGAACAACTATAAGT+TGG - chr6_1:7663535-7663554 None:intergenic 35.0%
TGGTATGATTGAAGTTTAGG+GGG - chr6_1:7663675-7663694 None:intergenic 35.0%
GTGGTATGATTGAAGTTTAG+GGG - chr6_1:7663676-7663695 None:intergenic 35.0%
GTGTGGTATGATTGAAGTTT+AGG - chr6_1:7663678-7663697 None:intergenic 35.0%
ATATCAGCTATCATGTAGTG+TGG - chr6_1:7663695-7663714 None:intergenic 35.0%
CACTTAAGCTGTGTAGTAAA+TGG - chr6_1:7663745-7663764 None:intergenic 35.0%
AAAGAAATAATGCAGCTAGC+GGG - chr6_1:7663889-7663908 None:intergenic 35.0%
TTGAAATTATCAGGGGTGAT+AGG + chr6_1:7663999-7664018 Msa0872250:intron 35.0%
!! TGAACTAGTCTGACTTTTAC+TGG + chr6_1:7664087-7664106 Msa0872250:intron 35.0%
! TTTTTCTTCTCGGCAAATTG+GGG - chr6_1:7664127-7664146 None:intergenic 35.0%
AATAGGTAAATGGGATGCTA+TGG + chr6_1:7664145-7664164 Msa0872250:intron 35.0%
ATGAGAATGGGAATGGTAAT+GGG - chr6_1:7664173-7664192 None:intergenic 35.0%
AATGAGAATGGGAATGGTAA+TGG - chr6_1:7664174-7664193 None:intergenic 35.0%
AGAATGAATGAGAATGGGAA+TGG - chr6_1:7664180-7664199 None:intergenic 35.0%
ACTTAGGACTTTCATGTATG+AGG - chr6_1:7664361-7664380 None:intergenic 35.0%
GAAAACTGCAACATGTACTT+AGG - chr6_1:7664377-7664396 None:intergenic 35.0%
! GCAGTTTTCAAAGCGATATA+TGG + chr6_1:7664388-7664407 Msa0872250:intron 35.0%
! GAGTCAACCCTTTATTTAGT+AGG - chr6_1:7664737-7664756 None:intergenic 35.0%
TCTTGAGCTTTCAGAACTAT+TGG + chr6_1:7664800-7664819 Msa0872250:three_prime_UTR 35.0%
GAATACGATCCAACACCATA+CGG + chr6_1:7661610-7661629 Msa0872250:CDS 40.0%
TACGACATTCACCTTACCTA+CGG + chr6_1:7661640-7661659 Msa0872250:CDS 40.0%
TAACATGTTTCATCGGAAGG+TGG - chr6_1:7661676-7661695 None:intergenic 40.0%
GATGAAACATGTTACCCATC+AGG + chr6_1:7661682-7661701 Msa0872250:CDS 40.0%
TATGCTCAACCTTCTGCTTA+TGG + chr6_1:7661751-7661770 Msa0872250:CDS 40.0%
GATTCAGGATGAAAACCACT+AGG - chr6_1:7661835-7661854 None:intergenic 40.0%
! AGTGGTTTTCATCCTGAATC+TGG + chr6_1:7661835-7661854 Msa0872250:CDS 40.0%
! GGTGGTCAAGAATCTGAAAT+TGG + chr6_1:7661904-7661923 Msa0872250:CDS 40.0%
! TCTGAAATTGGATCTGGGTA+TGG + chr6_1:7661916-7661935 Msa0872250:CDS 40.0%
AAATTGGATCTGGGTATGGT+GGG + chr6_1:7661920-7661939 Msa0872250:CDS 40.0%
AAGAGGGTGAATATGGATCT+GGG + chr6_1:7661950-7661969 Msa0872250:CDS 40.0%
TCTGAATTTGGATCTGGGTA+TGG + chr6_1:7662078-7662097 Msa0872250:CDS 40.0%
CTGAATTTGGATCTGGGTAT+GGG + chr6_1:7662079-7662098 Msa0872250:CDS 40.0%
AGGAAGCAAGAATCTGGATA+TGG + chr6_1:7662144-7662163 Msa0872250:CDS 40.0%
GGAAGCAAGAATCTGGATAT+GGG + chr6_1:7662145-7662164 Msa0872250:CDS 40.0%
AGGAAAGTGAATATGGGTCT+GGG + chr6_1:7662214-7662233 Msa0872250:CDS 40.0%
AGGAAGAATGAGTATGAGAG+TGG + chr6_1:7662279-7662298 Msa0872250:CDS 40.0%
AAGAATGAGTATGAGAGTGG+TGG + chr6_1:7662282-7662301 Msa0872250:CDS 40.0%
TATGGGAGGAAAACTAGCTA+TGG + chr6_1:7662429-7662448 Msa0872250:CDS 40.0%
TATGAGAGGAAACCTAGCTA+TGG + chr6_1:7662495-7662514 Msa0872250:CDS 40.0%
TATGGGAGGAAAACTAGCTA+TGG + chr6_1:7662429-7662448 Msa0872250:CDS 40.0%
! AGGTGTGATGATGATGATGA+GGG + chr6_1:7662678-7662697 Msa0872250:CDS 40.0%
! GATGATGATGATGAGGGATA+TGG + chr6_1:7662684-7662703 Msa0872250:CDS 40.0%
TATCCTACTTAGGATCGGAA+GGG - chr6_1:7662975-7662994 None:intergenic 40.0%
ATATCCTACTTAGGATCGGA+AGG - chr6_1:7662976-7662995 None:intergenic 40.0%
ACTATTGTCTAGTAGGCAAG+GGG - chr6_1:7663075-7663094 None:intergenic 40.0%
CACTATTGTCTAGTAGGCAA+GGG - chr6_1:7663076-7663095 None:intergenic 40.0%
ACACTATTGTCTAGTAGGCA+AGG - chr6_1:7663077-7663096 None:intergenic 40.0%
GGAGTACACTATTGTCTAGT+AGG - chr6_1:7663082-7663101 None:intergenic 40.0%
ACTACAACCAATAGGGAACA+AGG - chr6_1:7663266-7663285 None:intergenic 40.0%
TCCATAGTTGCATTGCATAG+TGG + chr6_1:7663422-7663441 Msa0872250:intron 40.0%
TCCACTATGCAATGCAACTA+TGG - chr6_1:7663426-7663445 None:intergenic 40.0%
ACAAGAGCTTCCCTATATAG+CGG - chr6_1:7663494-7663513 None:intergenic 40.0%
GGTATGATTGAAGTTTAGGG+GGG - chr6_1:7663674-7663693 None:intergenic 40.0%
! CCTAAAGGGCATGTTTGTAT+TGG - chr6_1:7664214-7664233 None:intergenic 40.0%
CCAATACAAACATGCCCTTT+AGG + chr6_1:7664211-7664230 Msa0872250:intron 40.0%
TAAGAAACCGCAAGCCTAAA+GGG - chr6_1:7664228-7664247 None:intergenic 40.0%
TTAAGAAACCGCAAGCCTAA+AGG - chr6_1:7664229-7664248 None:intergenic 40.0%
! ATGATGTTTTCGTACCATGC+AGG + chr6_1:7664578-7664597 Msa0872250:intron 40.0%
! TGATGTTTTCGTACCATGCA+GGG + chr6_1:7664579-7664598 Msa0872250:intron 40.0%
ACTCGTCATCATAACTCTTG+CGG - chr6_1:7664665-7664684 None:intergenic 40.0%
TTAGCAGGCAATATCATACC+AGG - chr6_1:7664938-7664957 None:intergenic 40.0%
!! GTTTGTTATAAGCAGGAGTG+AGG + chr6_1:7665024-7665043 Msa0872250:three_prime_UTR 40.0%
! AGCAGGAGTGAGGTAATTTT+AGG + chr6_1:7665034-7665053 Msa0872250:three_prime_UTR 40.0%
ATGTCATACTTCACTCGTGG+CGG + chr6_1:7661556-7661575 Msa0872250:CDS 45.0%
! GAATTGGTCTACCGTAGGTA+AGG - chr6_1:7661654-7661673 None:intergenic 45.0%
GTTTCATCGGAAGGTGGAAT+TGG - chr6_1:7661670-7661689 None:intergenic 45.0%
GGGTAACATGTTTCATCGGA+AGG - chr6_1:7661679-7661698 None:intergenic 45.0%
GCTTCATCACCATAAGCAGA+AGG - chr6_1:7661763-7661782 None:intergenic 45.0%
! GGTTTTCATCCTGAATCTGG+TGG + chr6_1:7661838-7661857 Msa0872250:CDS 45.0%
TTTCATCCTGAATCTGGTGG+TGG + chr6_1:7661841-7661860 Msa0872250:CDS 45.0%
TATGGGAGGAAACAAGGATC+TGG + chr6_1:7661877-7661896 Msa0872250:CDS 45.0%
ATGGGAGGAAACAAGGATCT+GGG + chr6_1:7661878-7661897 Msa0872250:CDS 45.0%
AGGAAACAAGGATCTGGGTA+TGG + chr6_1:7661883-7661902 Msa0872250:CDS 45.0%
AAACAAGGATCTGGGTATGG+TGG + chr6_1:7661886-7661905 Msa0872250:CDS 45.0%
GAAATTGGATCTGGGTATGG+TGG + chr6_1:7661919-7661938 Msa0872250:CDS 45.0%
AGGAAGCAAGAGGGTGAATA+TGG + chr6_1:7661943-7661962 Msa0872250:CDS 45.0%
CAAGAGGGTGAATATGGATC+TGG + chr6_1:7661949-7661968 Msa0872250:CDS 45.0%
GGTGAATATGGATCTGGGTA+TGG + chr6_1:7661955-7661974 Msa0872250:CDS 45.0%
GAATATGGATCTGGGTATGG+TGG + chr6_1:7661958-7661977 Msa0872250:CDS 45.0%
AGATCCATATTCACCCTCCT+GGG - chr6_1:7661992-7662011 None:intergenic 45.0%
AGGAGGGTGAATATGGATCT+GGG + chr6_1:7661992-7662011 Msa0872250:CDS 45.0%
GGTGAATATGGATCTGGGTA+TGG + chr6_1:7661955-7661974 Msa0872250:CDS 45.0%
GAATATGGATCTGGGTATGG+TGG + chr6_1:7661958-7661977 Msa0872250:CDS 45.0%
AGGAGGGTGAATATGGATCT+GGG + chr6_1:7661992-7662011 Msa0872250:CDS 45.0%
GGTGAATATGGATCTGGGTA+TGG + chr6_1:7661955-7661974 Msa0872250:CDS 45.0%
GAATATGGATCTGGGTATGG+TGG + chr6_1:7661958-7661977 Msa0872250:CDS 45.0%
TGGGTATGGGAGAAAGAATG+AGG + chr6_1:7662092-7662111 Msa0872250:CDS 45.0%
GAGGAAAGTGAATATGGGTC+CGG + chr6_1:7662111-7662130 Msa0872250:CDS 45.0%
AGTGAATATGGGTCCGGTTA+TGG + chr6_1:7662117-7662136 Msa0872250:CDS 45.0%
TTGCTTCCTTCCACCATAAC+CGG - chr6_1:7662133-7662152 None:intergenic 45.0%
CAAGAATCTGGATATGGGTC+AGG + chr6_1:7662150-7662169 Msa0872250:CDS 45.0%
TCTGGATATGGGTCAGGATA+TGG + chr6_1:7662156-7662175 Msa0872250:CDS 45.0%
GATATGGGTCAGGATATGGT+GGG + chr6_1:7662160-7662179 Msa0872250:CDS 45.0%
ATATGGGTCAGGATATGGTG+GGG + chr6_1:7662161-7662180 Msa0872250:CDS 45.0%
GGGCCCAGAAATCTGAATAT+GGG + chr6_1:7662181-7662200 Msa0872250:CDS 45.0%
GAGGAAAGTGAATATGGGTC+TGG + chr6_1:7662111-7662130 Msa0872250:CDS 45.0%
AGTGAATATGGGTCTGGGTA+TGG + chr6_1:7662219-7662238 Msa0872250:CDS 45.0%
AATATGGGTCTGGGTATGGT+GGG + chr6_1:7662223-7662242 Msa0872250:CDS 45.0%
! GTATGGTGGGAGAAAGAATG+AGG + chr6_1:7662236-7662255 Msa0872250:CDS 45.0%
AAAGAATGAGGAGGAGAGTG+AGG + chr6_1:7662248-7662267 Msa0872250:CDS 45.0%
AAGAATGAGGAGGAGAGTGA+GGG + chr6_1:7662249-7662268 Msa0872250:CDS 45.0%
!! TGAGTATGAGAGTGGTGGAT+CGG + chr6_1:7662287-7662306 Msa0872250:CDS 45.0%
GGAGGAAGAAGAGTGGTTAT+GGG + chr6_1:7662322-7662341 Msa0872250:CDS 45.0%
GAGGAAGAAGAGTGGTTATG+GGG + chr6_1:7662323-7662342 Msa0872250:CDS 45.0%
TATGAGAGGAAGCCTAGCTA+TGG + chr6_1:7662378-7662397 Msa0872250:CDS 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG - chr6_1:7662426-7662445 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+CGG + chr6_1:7662433-7662452 Msa0872250:CDS 45.0%
AGAGGAAACCTAGCTATGGA+AGG + chr6_1:7662499-7662518 Msa0872250:CDS 45.0%
TCATCACTCCTTCCATAGCT+AGG - chr6_1:7662510-7662529 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG + chr6_1:7662512-7662531 Msa0872250:CDS 45.0%
ATGAGGAGAAGCCAAGCTAT+GGG + chr6_1:7662529-7662548 Msa0872250:CDS 45.0%
TACGAGAGGAAACCTAGCTA+TGG + chr6_1:7662564-7662583 Msa0872250:CDS 45.0%
AGAGGAAACCTAGCTATGGA+AGG + chr6_1:7662499-7662518 Msa0872250:CDS 45.0%
TCATCACTCCTTCCATAGCT+AGG - chr6_1:7662510-7662529 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG + chr6_1:7662512-7662531 Msa0872250:CDS 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG - chr6_1:7662426-7662445 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+AGG + chr6_1:7662433-7662452 Msa0872250:CDS 45.0%
! CTATGGAAGGAGTGATGATG+AGG + chr6_1:7662512-7662531 Msa0872250:CDS 45.0%
AACCGAGCTATGGTTATGAG+AGG + chr6_1:7662658-7662677 Msa0872250:CDS 45.0%
CACCTCTCATAACCATAGCT+CGG - chr6_1:7662663-7662682 None:intergenic 45.0%
! GAGGTGTGATGATGATGATG+AGG + chr6_1:7662677-7662696 Msa0872250:CDS 45.0%
ATCCTACTTAGGATCGGAAG+GGG - chr6_1:7662974-7662993 None:intergenic 45.0%
CTATTGTCTAGTAGGCAAGG+GGG - chr6_1:7663074-7663093 None:intergenic 45.0%
! GCGTTTTCCTTGTTCCCTAT+TGG + chr6_1:7663256-7663275 Msa0872250:intron 45.0%
GTTGCTGCAATTGAAGAGTG+TGG - chr6_1:7663310-7663329 None:intergenic 45.0%
!! TGCATTGCATAGTGGATCCT+AGG + chr6_1:7663430-7663449 Msa0872250:intron 45.0%
AACTGTAGCGACCGCTATAT+AGG + chr6_1:7663480-7663499 Msa0872250:intron 45.0%
ACTGTAGCGACCGCTATATA+GGG + chr6_1:7663481-7663500 Msa0872250:intron 45.0%
GGCAAATTGGGGTTAAGGAA+TGG - chr6_1:7664116-7664135 None:intergenic 45.0%
TTCTCGGCAAATTGGGGTTA+AGG - chr6_1:7664121-7664140 None:intergenic 45.0%
AAACATGCCCTTTAGGCTTG+CGG + chr6_1:7664218-7664237 Msa0872250:intron 45.0%
!! GACTGTCGTTGCTGTTTGAA+TGG + chr6_1:7664694-7664713 Msa0872250:three_prime_UTR 45.0%
AACAAGCATGGTGCATCTGT+GGG - chr6_1:7664966-7664985 None:intergenic 45.0%
AAACAAGCATGGTGCATCTG+TGG - chr6_1:7664967-7664986 None:intergenic 45.0%
! TACTTCACTCGTGGCGGAAA+CGG + chr6_1:7661562-7661581 Msa0872250:CDS 50.0%
TACGATCCAACACCATACGG+TGG + chr6_1:7661613-7661632 Msa0872250:CDS 50.0%
TATCCACCACCGTATGGTGT+TGG - chr6_1:7661622-7661641 None:intergenic 50.0%
ATGTCGTATCCACCACCGTA+TGG - chr6_1:7661628-7661647 None:intergenic 50.0%
! AGGTGGAATTGGTCTACCGT+AGG - chr6_1:7661659-7661678 None:intergenic 50.0%
CTAGGAGCAGGTCTAGGTTT+AGG - chr6_1:7661817-7661836 None:intergenic 50.0%
AAACCTAGACCTGCTCCTAG+TGG + chr6_1:7661817-7661836 Msa0872250:CDS 50.0%
AAACCACTAGGAGCAGGTCT+AGG - chr6_1:7661823-7661842 None:intergenic 50.0%
GGATGAAAACCACTAGGAGC+AGG - chr6_1:7661829-7661848 None:intergenic 50.0%
! TATGGTGGGAGGAAGCAAGA+GGG + chr6_1:7661934-7661953 Msa0872250:CDS 50.0%
TATGGATCTGGGTATGGTGG+TGG + chr6_1:7661961-7661980 Msa0872250:CDS 50.0%
CAGATCCATATTCACCCTCC+TGG - chr6_1:7661993-7662012 None:intergenic 50.0%
CAGGAGGGTGAATATGGATC+TGG + chr6_1:7661991-7662010 Msa0872250:CDS 50.0%
TATGGATCTGGGTATGGTGG+TGG + chr6_1:7661961-7661980 Msa0872250:CDS 50.0%
CAGGAGGGTGAATATGGATC+TGG + chr6_1:7661991-7662010 Msa0872250:CDS 50.0%
! ATGGATCTGGGTATGGTGGA+AGG + chr6_1:7662046-7662065 Msa0872250:CDS 50.0%
GAATATGGGTCCGGTTATGG+TGG + chr6_1:7662120-7662139 Msa0872250:CDS 50.0%
GGTGGAAGGAAGCAAGAATC+TGG + chr6_1:7662138-7662157 Msa0872250:CDS 50.0%
GGATATGGGTCAGGATATGG+TGG + chr6_1:7662159-7662178 Msa0872250:CDS 50.0%
GGGGCCCAGAAATCTGAATA+TGG + chr6_1:7662180-7662199 Msa0872250:CDS 50.0%
GAATATGGGTCTGGGTATGG+TGG + chr6_1:7662222-7662241 Msa0872250:CDS 50.0%
TGGTGGGAGAAAGAATGAGG+AGG + chr6_1:7662239-7662258 Msa0872250:CDS 50.0%
AGGAGGAGAGTGAGGGTTAT+GGG + chr6_1:7662256-7662275 Msa0872250:CDS 50.0%
! TGGTGGATCGGAGTATGGAT+CGG + chr6_1:7662299-7662318 Msa0872250:CDS 50.0%
GGGAGGAAGAAGAGTGGTTA+TGG + chr6_1:7662321-7662340 Msa0872250:CDS 50.0%
GAAGAAGAGTGGTTATGGGG+AGG + chr6_1:7662326-7662345 Msa0872250:CDS 50.0%
AGTGGTTATGGGGAGGAAGA+AGG + chr6_1:7662333-7662352 Msa0872250:CDS 50.0%
GTGGTTATGGGGAGGAAGAA+GGG + chr6_1:7662334-7662353 Msa0872250:CDS 50.0%
TATGGGGAGGAAGAAGGGTA+TGG + chr6_1:7662339-7662358 Msa0872250:CDS 50.0%
! AGGAAGAAGGGTATGGAGGA+GGG + chr6_1:7662346-7662365 Msa0872250:CDS 50.0%
AGAGGAAGCCTAGCTATGGA+AGG + chr6_1:7662382-7662401 Msa0872250:CDS 50.0%
TCGTCACTCCTTCCATAGCT+AGG - chr6_1:7662393-7662412 None:intergenic 50.0%
CTATGGAAGGAGTGACGATG+AGG + chr6_1:7662395-7662414 Msa0872250:CDS 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG + chr6_1:7662412-7662431 Msa0872250:CDS 50.0%
TAGCTATGGACGGAGTGATG+AGG + chr6_1:7662443-7662462 Msa0872250:CDS 50.0%
TACTCAGTCCTCCCATAGCT+CGG - chr6_1:7662477-7662496 None:intergenic 50.0%
ATGGGAGGACTGAGTATGAG+AGG + chr6_1:7662481-7662500 Msa0872250:CDS 50.0%
GATGAGGAGAAGCCAAGCTA+TGG + chr6_1:7662528-7662547 Msa0872250:CDS 50.0%
TCAGTAGTCCTCCCATAGCT+TGG - chr6_1:7662543-7662562 None:intergenic 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG + chr6_1:7662412-7662431 Msa0872250:CDS 50.0%
GATGAGGAGAAACCGAGCTA+TGG + chr6_1:7662648-7662667 Msa0872250:CDS 50.0%
! GGGCTGTAACTTGTCACACA+AGG - chr6_1:7662954-7662973 None:intergenic 50.0%
! TGTTTTCGTACCATGCAGGG+AGG + chr6_1:7664582-7664601 Msa0872250:intron 50.0%
! TGAAGGCTCCGATGATGATG+AGG + chr6_1:7664608-7664627 Msa0872250:CDS 50.0%
! GAAGGCTCCGATGATGATGA+GGG + chr6_1:7664609-7664628 Msa0872250:CDS 50.0%
! AAGGCTCCGATGATGATGAG+GGG + chr6_1:7664610-7664629 Msa0872250:CDS 50.0%
CTTCCTCCCCTCATCATCAT+CGG - chr6_1:7664619-7664638 None:intergenic 50.0%
CGTCATCATAACTCTTGCGG+TGG - chr6_1:7664662-7664681 None:intergenic 50.0%
CATCTGTGGGATGCATTAGC+AGG - chr6_1:7664953-7664972 None:intergenic 50.0%
GATCCAACACCATACGGTGG+TGG + chr6_1:7661616-7661635 Msa0872250:CDS 55.0%
!! CATCCTGAATCTGGTGGTGG+TGG + chr6_1:7661844-7661863 Msa0872250:CDS 55.0%
GGTGGGTATGGGAGGAAACA+AGG + chr6_1:7661871-7661890 Msa0872250:CDS 55.0%
! TTGGATCTGGGTATGGTGGG+AGG + chr6_1:7661923-7661942 Msa0872250:CDS 55.0%
! GTATGGTGGGAGGAAGCAAG+AGG + chr6_1:7661933-7661952 Msa0872250:CDS 55.0%
!! GATCTGGGTATGGTGGTGGT+GGG + chr6_1:7661965-7661984 Msa0872250:CDS 55.0%
!! ATCTGGGTATGGTGGTGGTG+GGG + chr6_1:7661966-7661985 Msa0872250:CDS 55.0%
!! GATCTGGGTATGGTGGTGGT+GGG + chr6_1:7661965-7661984 Msa0872250:CDS 55.0%
!! ATCTGGGTATGGTGGTGGTG+GGG + chr6_1:7661966-7661985 Msa0872250:CDS 55.0%
! ATGGGTCCGGTTATGGTGGA+AGG + chr6_1:7662124-7662143 Msa0872250:CDS 55.0%
GAGGAGGAGAGTGAGGGTTA+TGG + chr6_1:7662255-7662274 Msa0872250:CDS 55.0%
AGGAGAGTGAGGGTTATGGG+AGG + chr6_1:7662259-7662278 Msa0872250:CDS 55.0%
!! GAGAGTGGTGGATCGGAGTA+TGG + chr6_1:7662294-7662313 Msa0872250:CDS 55.0%
GGTGGATCGGAGTATGGATC+GGG + chr6_1:7662300-7662319 Msa0872250:CDS 55.0%
GTGGATCGGAGTATGGATCG+GGG + chr6_1:7662301-7662320 Msa0872250:CDS 55.0%
! GAGGAAGAAGGGTATGGAGG+AGG + chr6_1:7662345-7662364 Msa0872250:CDS 55.0%
! AAGAAGGGTATGGAGGAGGG+AGG + chr6_1:7662349-7662368 Msa0872250:CDS 55.0%
GAGGGAGGAGTGAGTATGAG+AGG + chr6_1:7662364-7662383 Msa0872250:CDS 55.0%
GATGAGGAGAAGCCGAGCTA+TGG + chr6_1:7662411-7662430 Msa0872250:CDS 55.0%
CTATGGACGGAGTGATGAGG+AGG + chr6_1:7662446-7662465 Msa0872250:CDS 55.0%
AGGAGGAGAAGCCGAGCTAT+GGG + chr6_1:7662463-7662482 Msa0872250:CDS 55.0%
AGGAGAAGCCAAGCTATGGG+AGG + chr6_1:7662532-7662551 Msa0872250:CDS 55.0%
GGAGGACTACTGAGTACGAG+AGG + chr6_1:7662550-7662569 Msa0872250:CDS 55.0%
GATGAGGAGAAGCCGAGCTA+TGG + chr6_1:7662411-7662430 Msa0872250:CDS 55.0%
AGCCCCTTCCGATCCTAAGT+AGG + chr6_1:7662969-7662988 Msa0872250:intron 55.0%
! AACGGGTTCGTGTAGCACCT+AGG - chr6_1:7663450-7663469 None:intergenic 55.0%
ACCATGCAGGGAGGAGATGA+AGG + chr6_1:7664591-7664610 Msa0872250:intron 55.0%
TCTTGCGGTGGTGACTCTTG+TGG - chr6_1:7664650-7664669 None:intergenic 55.0%
CCACCACCACCACCAGATTC+AGG - chr6_1:7661850-7661869 None:intergenic 60.0%
!! CCTGAATCTGGTGGTGGTGG+TGG + chr6_1:7661847-7661866 Msa0872250:CDS 60.0%
!! GAATCTGGTGGTGGTGGTGG+TGG + chr6_1:7661850-7661869 Msa0872250:CDS 60.0%
!! GTGGTGGTGGTGGTGGGTAT+GGG + chr6_1:7661860-7661879 Msa0872250:CDS 60.0%
!! GGATCTGGGTATGGTGGTGG+TGG + chr6_1:7661964-7661983 Msa0872250:CDS 60.0%
!! GGATCTGGGTATGGTGGTGG+TGG + chr6_1:7661964-7661983 Msa0872250:CDS 60.0%
GGGGCTCAGGAGGGTGAATA+TGG + chr6_1:7662027-7662046 Msa0872250:CDS 60.0%
GATCGGAGTATGGATCGGGG+AGG + chr6_1:7662304-7662323 Msa0872250:CDS 60.0%
GGATCGGGGAGGAAGAAGAG+TGG + chr6_1:7662315-7662334 Msa0872250:CDS 60.0%
! GGGGAGGAAGAAGGGTATGG+AGG + chr6_1:7662342-7662361 Msa0872250:CDS 60.0%
AGGAGAAGCCGAGCTATGGG+AGG + chr6_1:7662415-7662434 Msa0872250:CDS 60.0%
GAGGAGGAGAAGCCGAGCTA+TGG + chr6_1:7662462-7662481 Msa0872250:CDS 60.0%
AGGAGAAGCCGAGCTATGGG+AGG + chr6_1:7662415-7662434 Msa0872250:CDS 60.0%
AGGAGAAGCCGAGCTATGGG+AGG + chr6_1:7662415-7662434 Msa0872250:CDS 60.0%
GCCTTCATCTCCTCCCTGCA+TGG - chr6_1:7664595-7664614 None:intergenic 60.0%
! GCTCCGATGATGATGAGGGG+AGG + chr6_1:7664613-7664632 Msa0872250:CDS 60.0%
!! TCTGGTGGTGGTGGTGGTGG+TGG + chr6_1:7661853-7661872 Msa0872250:CDS 65.0%
!! CTGGTGGTGGTGGTGGTGGT+GGG + chr6_1:7661854-7661873 Msa0872250:CDS 65.0%
!! GGTGGTGGTGGTGGTGGGTA+TGG + chr6_1:7661859-7661878 Msa0872250:CDS 65.0%
!! GTGGTGGTGGTGGGTATGGG+AGG + chr6_1:7661863-7661882 Msa0872250:CDS 65.0%
GGGGCCCAGGAGGGTGAATA+TGG + chr6_1:7661985-7662004 Msa0872250:CDS 65.0%
!! GTATGGTGGTGGTGGGGCTC+AGG + chr6_1:7662014-7662033 Msa0872250:CDS 65.0%
!! GTATGGTGGTGGTGGGGCCC+AGG + chr6_1:7661972-7661991 Msa0872250:CDS 70.0%
!! TGGTGGTGGTGGGGCTCAGG+AGG + chr6_1:7662017-7662036 Msa0872250:CDS 70.0%
!! GGTGGTGGTGGGGCTCAGGA+GGG + chr6_1:7662018-7662037 Msa0872250:CDS 70.0%
!! TGGTGGTGGTGGGGCCCAGG+AGG + chr6_1:7661975-7661994 Msa0872250:CDS 75.0%
!! GGTGGTGGTGGGGCCCAGGA+GGG + chr6_1:7661976-7661995 Msa0872250:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 7661556 7665111 7661556 ID=Msa0872250;Name=Msa0872250
chr6_1 mRNA 7661556 7665111 7661556 ID=Msa0872250-mRNA-1;Parent=Msa0872250;Name=Msa0872250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|425|416
chr6_1 exon 7661556 7662719 7661556 ID=Msa0872250-mRNA-1:exon:2306;Parent=Msa0872250-mRNA-1
chr6_1 exon 7664600 7665111 7664600 ID=Msa0872250-mRNA-1:exon:2307;Parent=Msa0872250-mRNA-1
chr6_1 CDS 7661556 7662719 7661556 ID=Msa0872250-mRNA-1:cds;Parent=Msa0872250-mRNA-1
chr6_1 CDS 7664600 7664686 7664600 ID=Msa0872250-mRNA-1:cds;Parent=Msa0872250-mRNA-1
chr6_1 three_prime_UTR 7664687 7665111 7664687 ID=Msa0872250-mRNA-1:three_prime_utr;Parent=Msa0872250-mRNA-1
Gene Sequence

>Msa0872250

ATGTCATACTTCACTCGTGGCGGAAACGGCGACGAAAGCGTCGACGATTTCGACGAATACGATCCAACACCATACGGTGGTGGATACGACATTCACCTTACCTACGGTAGACCAATTCCACCTTCCGATGAAACATGTTACCCATCAGGTTCATCAAACAATGATTTTGATTATGATCGTCCTCAATTTGAATCTTATGCTCAACCTTCTGCTTATGGTGATGAAGCTCTTGCTACTGAGTATAGTAGCTATTCTAGACCTAAACCTAGACCTGCTCCTAGTGGTTTTCATCCTGAATCTGGTGGTGGTGGTGGTGGTGGGTATGGGAGGAAACAAGGATCTGGGTATGGTGGTCAAGAATCTGAAATTGGATCTGGGTATGGTGGGAGGAAGCAAGAGGGTGAATATGGATCTGGGTATGGTGGTGGTGGGGCCCAGGAGGGTGAATATGGATCTGGGTATGGTGGTGGTGGGGCTCAGGAGGGTGAATATGGATCTGGGTATGGTGGAAGGAAGCAAGATTCTGAATTTGGATCTGGGTATGGGAGAAAGAATGAGGAAAGTGAATATGGGTCCGGTTATGGTGGAAGGAAGCAAGAATCTGGATATGGGTCAGGATATGGTGGGGCCCAGAAATCTGAATATGGGAGAAAGAATGAGGAAAGTGAATATGGGTCTGGGTATGGTGGGAGAAAGAATGAGGAGGAGAGTGAGGGTTATGGGAGGAAGAATGAGTATGAGAGTGGTGGATCGGAGTATGGATCGGGGAGGAAGAAGAGTGGTTATGGGGAGGAAGAAGGGTATGGAGGAGGGAGGAGTGAGTATGAGAGGAAGCCTAGCTATGGAAGGAGTGACGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGACGGAGTGATGAGGAGGAGAAGCCGAGCTATGGGAGGACTGAGTATGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCAAGCTATGGGAGGACTACTGAGTACGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGAAGGAGTGATGATGAGGAGAAACCGAGCTATGGTTATGAGAGGTGTGATGATGATGATGAGGGATATGGTCGTAAGAAATATGGAGGAGATGAAGGCTCCGATGATGATGAGGGGAGGAAGAAGCATCACCACAAGAGTCACCACCGCAAGAGTTATGATGACGAGTAA
Protein sequence

>Msa0872250

MSYFTRGGNGDESVDDFDEYDPTPYGGGYDIHLTYGRPIPPSDETCYPSGSSNNDFDYDRPQFESYAQPSAYGDEALATEYSSYSRPKPRPAPSGFHPESGGGGGGGYGRKQGSGYGGQESEIGSGYGGRKQEGEYGSGYGGGGAQEGEYGSGYGGGGAQEGEYGSGYGGRKQDSEFGSGYGRKNEESEYGSGYGGRKQESGYGSGYGGAQKSEYGRKNEESEYGSGYGGRKNEEESEGYGRKNEYESGGSEYGSGRKKSGYGEEEGYGGGRSEYERKPSYGRSDDEEKPSYGRKTSYGRSDEEEKPSYGRTEYERKPSYGRSDDEEKPSYGRTTEYERKPSYGRSDDEEKPSYGRKTSYGRSDDEEKPSYGYERCDDDDEGYGRKKYGGDEGSDDDEGRKKHHHKSHHRKSYDDE*