AlfalfaGEDB | Msa0910960

M. sativa cultivar zhongmu-4 / Msa0910960

KEGG: -
GO: GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950
PFAM: PF01694.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910960	XP_013449941.1	94.479	326	3	1	1	311	1	326	0.0	616

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910960	sp\|Q9CAN1\|RBL2_ARATH	61.920	323	102	3	1	308	1	317	9.33e-133	382

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0910960	0.833020	6.777954e-56	-8.615850e-47
Msa0024400	Msa0910960	0.856612	2.859761e-62	-8.615850e-47
Msa0076290	Msa0910960	0.832582	8.708757e-56	-8.615850e-47
Msa0091730	Msa0910960	0.837637	4.621431e-57	-8.615850e-47
Msa0120280	Msa0910960	0.829214	5.834683e-55	-8.615850e-47
Msa0122530	Msa0910960	0.847782	9.299938e-60	-8.615850e-47
Msa0163510	Msa0910960	0.848918	4.511583e-60	-8.615850e-47
Msa0194920	Msa0910960	0.822027	2.949817e-53	-8.615850e-47
Msa0195640	Msa0910960	0.800040	1.736812e-48	-8.615850e-47
Msa0204960	Msa0910960	0.802477	5.507624e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910960	MtrunA17_Chr6g0472501	94.479	326	3	1	1	311	1	326	0.0	616
Msa0910960	MtrunA17_Chr4g0009841	58.896	326	107	5	6	308	8	329	2.45e-130	375
Msa0910960	MtrunA17_Chr1g0203681	59.509	326	97	5	4	311	10	318	8.36e-125	359
Msa0910960	MtrunA17_Chr2g0328271	59.259	297	100	3	34	311	43	337	2.73e-115	338
Msa0910960	MtrunA17_Chr7g0238701	57.627	295	104	4	34	311	25	315	1.17e-114	335
Msa0910960	MtrunA17_Chr2g0332941	52.899	276	107	4	34	287	30	304	6.88e-93	278
Msa0910960	MtrunA17_Chr3g0115331	40.878	296	150	3	37	310	42	334	1.75e-63	205
Msa0910960	MtrunA17_Chr2g0322601	38.953	172	81	4	136	305	18	167	5.73e-24	96.3
Msa0910960	MtrunA17_Chr2g0322611	40.860	93	40	1	90	167	1	93	2.96e-14	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910960	AT1G63120.1	61.920	323	102	3	1	308	1	317	9.49e-134	382
Msa0910960	AT5G07250.1	60.417	336	105	4	1	310	12	345	1.17e-128	370
Msa0910960	AT2G29050.1	60.133	301	98	4	29	311	48	344	1.29e-125	364
Msa0910960	AT1G12750.4	56.173	324	109	4	1	308	1	307	1.27e-123	356
Msa0910960	AT1G12750.7	56.173	324	109	4	1	308	1	307	1.27e-123	356
Msa0910960	AT1G12750.6	56.173	324	109	4	1	308	1	307	1.27e-123	356
Msa0910960	AT1G12750.3	56.173	324	109	4	1	308	1	307	1.27e-123	356
Msa0910960	AT1G12750.1	56.173	324	109	4	1	308	1	307	1.27e-123	356
Msa0910960	AT3G53780.2	50.147	341	130	5	3	309	13	347	1.17e-109	324
Msa0910960	AT2G29050.2	54.125	303	88	6	29	284	48	346	1.06e-103	307

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Find 91 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACGACAAGATCAGC+AGG	0.541526	6_2:-16103844	None:intergenic
AAACCTTGTACTTAGACTTG+AGG	0.651465	6_2:-16107382	None:intergenic
AACCAAATTGAGGACGGGGA+AGG	0.621571	6_2:-16107325	None:intergenic
AACCAACCAAATTGAGGACG+GGG	0.621889	6_2:-16107329	None:intergenic
AACCAAGGAGAAATCCTGTT+AGG	0.498873	6_2:-16107295	None:intergenic
AACCCTTACGTTTCAGAAGA+AGG	0.412425	6_2:-16104318	None:intergenic
AAGAGCACCGGAAGCACCAA+CGG	0.530069	6_2:-16106515	None:intergenic
AAGGAAAGTTTGGAAATTTA+TGG	0.166349	6_2:-16103970	None:intergenic
AATATATATCATATAGATAA+AGG	0.360493	6_2:+16108500	Msa0910960:three_prime_UTR
ACACGCTGGAATCATTCATT+TGG	0.450645	6_2:+16105984	Msa0910960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCCAAAAGAAGGAAAGTT+TGG	-	chr6_2:16103983-16104002	None:intergenic	30.0%
TTGAACCAATATCCAAAAGA+AGG	-	chr6_2:16103992-16104011	None:intergenic	30.0%
AGAGAAAAAGAAACATGTCT+GGG	+	chr6_2:16104031-16104050	Msa0910960:exon	30.0%
AAAAATGAGTCAATCCAATC+AGG	+	chr6_2:16104552-16104571	Msa0910960:intron	30.0%
AGCAATACCAAAATCATCAA+AGG	-	chr6_2:16104579-16104598	None:intergenic	30.0%
ATAAGCTGTTTATCCAAACA+GGG	-	chr6_2:16104608-16104627	None:intergenic	30.0%
AATAAGCTGTTTATCCAAAC+AGG	-	chr6_2:16104609-16104628	None:intergenic	30.0%
AACAGCTTATTTGTAGCTTA+AGG	+	chr6_2:16104618-16104637	Msa0910960:intron	30.0%
ACACAAATAAGAATCCATAC+AGG	+	chr6_2:16104831-16104850	Msa0910960:intron	30.0%
TGGTTTAGTGAATTGGATTT+GGG	+	chr6_2:16105241-16105260	Msa0910960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	16103791	16108580	16103791	ID=Msa0910960;Name=Msa0910960
chr6_2	mRNA	16103791	16108580	16103791	ID=Msa0910960-mRNA-1;Parent=Msa0910960;Name=Msa0910960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=254\|0.75\|0.8\|1\|1\|1\|5\|217\|311
chr6_2	exon	16103791	16104331	16103791	ID=Msa0910960-mRNA-1:exon:3566;Parent=Msa0910960-mRNA-1
chr6_2	exon	16105903	16106021	16105903	ID=Msa0910960-mRNA-1:exon:3567;Parent=Msa0910960-mRNA-1
chr6_2	exon	16106437	16106600	16106437	ID=Msa0910960-mRNA-1:exon:3568;Parent=Msa0910960-mRNA-1
chr6_2	exon	16107200	16107450	16107200	ID=Msa0910960-mRNA-1:exon:3569;Parent=Msa0910960-mRNA-1
chr6_2	exon	16108249	16108580	16108249	ID=Msa0910960-mRNA-1:exon:3570;Parent=Msa0910960-mRNA-1
chr6_2	five_prime_UTR	16103791	16104044	16103791	ID=Msa0910960-mRNA-1:five_prime_utr;Parent=Msa0910960-mRNA-1
chr6_2	CDS	16104045	16104331	16104045	ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1
chr6_2	CDS	16105903	16106021	16105903	ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1
chr6_2	CDS	16106437	16106600	16106437	ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1
chr6_2	CDS	16107200	16107450	16107200	ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1
chr6_2	CDS	16108249	16108363	16108249	ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1
chr6_2	three_prime_UTR	16108364	16108580	16108364	ID=Msa0910960-mRNA-1:three_prime_utr;Parent=Msa0910960-mRNA-1

Gene Sequence

>Msa0910960

ATGTCTGGGAGAGATCTAGAGAGAGATGGAGGGAACAAGAACAATAACAATCATGCATATGCTGTTCCACCAACTTCAAGTGGTTATGATCCAGAAACTAGTTGGACATCATGGCTTGTACCTATGTTTGTTGTGGCTAATCTTGTTGTTTTTGTTGTAGCTATGTATATTAATAATTGTCCTAGTAAAAATCTTGGTTTTGATGGTGCTTGTGTTTTGAAGTTTCTTGGGAGATTCTCTTTTCAGCCTTTGAAAGAGAATCCTTTGCTTGGTCCTTCTTCTGAAACACTAACGAAGATGGGAGCCCTTAAGTGGGATGCTGTTGTGAATCATCACCAAGGATGGAGACTTGTCTCATGCATTTGGTTACACGCTGGAATCATTCATTTGGCAGCAAACATGATCATGAGGATAGGAATCGTTTACCTAGTATCTGGATTTGGTGGGAGTATACTATCTGCTCTATTCATTAGAAAAAGCATCTCCGTTGGTGCTTCCGGTGCTCTTTTTGGACTTCTTGGAGCCATGCTTTCCGAACTTATCACAAACTGGAGTATTTACACCAATAAAGTAGCTGCTTTGATGACACTTCTGTTTATTATTGTCATCAATCTGGTGATTGGAATGTTGCCACATGTCGACAATTTTGCTCATATTGGGGGATTCCTAACAGGATTTCTCCTTGGTTTCATTTTCCTTCCCCGTCCTCAATTTGGTTGGTTAGCACAGCGACATGTTCCTGCTGGTGTTCGCCTCAAGTCTAAGTACAAGGTTTACCAATATGTTCTATGGGTTGTATCTCTCGTACTATTGATTGCCTGGTTATCCATTGGTTTAGTGATGCTATTGCGGGGTGAAAGCGGATACGACCACTGCCATTGGTGTCACTACCTGACATGTGTTCCAACTTCTAAATGGAAATGCGATGACAGTTAA

Protein sequence

>Msa0910960

MSGRDLERDGGNKNNNNHAYAVPPTSSGYDPETSWTSWLVPMFVVANLVVFVVAMYINNCPSKNLGFDGACVLKFLGRFSFQPLKENPLLGPSSETLTKMGALKWDAVVNHHQGWRLVSCIWLHAGIIHLAANMIMRIGIVYLVSGFGGSILSALFIRKSISVGASGALFGLLGAMLSELITNWSIYTNKVAALMTLLFIIVINLVIGMLPHVDNFAHIGGFLTGFLLGFIFLPRPQFGWLAQRHVPAGVRLKSKYKVYQYVLWVVSLVLLIAWLSIGLVMLLRGESGYDHCHWCHYLTCVPTSKWKCDDS*