Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910960 | XP_013449941.1 | 94.479 | 326 | 3 | 1 | 1 | 311 | 1 | 326 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910960 | sp|Q9CAN1|RBL2_ARATH | 61.920 | 323 | 102 | 3 | 1 | 308 | 1 | 317 | 9.33e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0910960 | 0.833020 | 6.777954e-56 | -8.615850e-47 |
| Msa0024400 | Msa0910960 | 0.856612 | 2.859761e-62 | -8.615850e-47 |
| Msa0076290 | Msa0910960 | 0.832582 | 8.708757e-56 | -8.615850e-47 |
| Msa0091730 | Msa0910960 | 0.837637 | 4.621431e-57 | -8.615850e-47 |
| Msa0120280 | Msa0910960 | 0.829214 | 5.834683e-55 | -8.615850e-47 |
| Msa0606080 | Msa0910960 | 0.832072 | 1.164198e-55 | -8.615850e-47 |
| Msa0619780 | Msa0910960 | 0.817804 | 2.726309e-52 | -8.615850e-47 |
| Msa0651560 | Msa0910960 | 0.854319 | 1.332670e-61 | -8.615850e-47 |
| Msa0690310 | Msa0910960 | 0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa0690540 | Msa0910960 | 0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0692980 | Msa0910960 | 0.810787 | 9.690053e-51 | -8.615850e-47 |
| Msa0702410 | Msa0910960 | 0.827566 | 1.457245e-54 | -8.615850e-47 |
| Msa0706230 | Msa0910960 | 0.823242 | 1.539526e-53 | -8.615850e-47 |
| Msa0828590 | Msa0910960 | 0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0122530 | Msa0910960 | 0.847782 | 9.299938e-60 | -8.615850e-47 |
| Msa0163510 | Msa0910960 | 0.848918 | 4.511583e-60 | -8.615850e-47 |
| Msa0194920 | Msa0910960 | 0.822027 | 2.949817e-53 | -8.615850e-47 |
| Msa0195640 | Msa0910960 | 0.800040 | 1.736812e-48 | -8.615850e-47 |
| Msa0204960 | Msa0910960 | 0.802477 | 5.507624e-49 | -8.615850e-47 |
| Msa0215990 | Msa0910960 | 0.842395 | 2.654066e-58 | -8.615850e-47 |
| Msa0217670 | Msa0910960 | 0.855040 | 8.234694e-62 | -8.615850e-47 |
| Msa0236920 | Msa0910960 | 0.808721 | 2.694443e-50 | -8.615850e-47 |
| Msa0237300 | Msa0910960 | 0.845774 | 3.291664e-59 | -8.615850e-47 |
| Msa0377820 | Msa0910960 | 0.829346 | 5.419038e-55 | -8.615850e-47 |
| Msa0385500 | Msa0910960 | 0.800036 | 1.739886e-48 | -8.615850e-47 |
| Msa0395980 | Msa0910960 | 0.809428 | 1.901736e-50 | -8.615850e-47 |
| Msa0426580 | Msa0910960 | 0.811595 | 6.471002e-51 | -8.615850e-47 |
| Msa0439960 | Msa0910960 | 0.846036 | 2.794029e-59 | -8.615850e-47 |
| Msa0440510 | Msa0910960 | 0.835219 | 1.905988e-56 | -8.615850e-47 |
| Msa0445750 | Msa0910960 | 0.816464 | 5.455310e-52 | -8.615850e-47 |
| Msa0472930 | Msa0910960 | 0.834240 | 3.359796e-56 | -8.615850e-47 |
| Msa0256140 | Msa0910960 | 0.812216 | 4.739569e-51 | -8.615850e-47 |
| Msa0274720 | Msa0910960 | 0.850346 | 1.801731e-60 | -8.615850e-47 |
| Msa0296790 | Msa0910960 | 0.815637 | 8.348414e-52 | -8.615850e-47 |
| Msa0315520 | Msa0910960 | 0.853563 | 2.200104e-61 | -8.615850e-47 |
| Msa0336450 | Msa0910960 | 0.803259 | 3.796713e-49 | -8.615850e-47 |
| Msa0336540 | Msa0910960 | 0.808307 | 3.303068e-50 | -8.615850e-47 |
| Msa0361850 | Msa0910960 | 0.800994 | 1.109650e-48 | -8.615850e-47 |
| Msa0362890 | Msa0910960 | 0.815760 | 7.836101e-52 | -8.615850e-47 |
| Msa0491000 | Msa0910960 | 0.823618 | 1.257054e-53 | -8.615850e-47 |
| Msa0515340 | Msa0910960 | 0.835397 | 1.718981e-56 | -8.615850e-47 |
| Msa0517590 | Msa0910960 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0527540 | Msa0910960 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0530300 | Msa0910960 | 0.812767 | 3.592910e-51 | -8.615850e-47 |
| Msa0576790 | Msa0910960 | 0.834049 | 3.752202e-56 | -8.615850e-47 |
| Msa0577680 | Msa0910960 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0577770 | Msa0910960 | 0.816034 | 6.809652e-52 | -8.615850e-47 |
| Msa0872250 | Msa0910960 | 0.806928 | 6.482637e-50 | -8.615850e-47 |
| Msa0882520 | Msa0910960 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
| Msa0891590 | Msa0910960 | 0.847662 | 1.003269e-59 | -8.615850e-47 |
| Msa0910960 | Msa0944020 | 0.803692 | 3.087458e-49 | -8.615850e-47 |
| Msa0910960 | Msa0980540 | 0.803292 | 3.737902e-49 | -8.615850e-47 |
| Msa0910960 | Msa0985180 | 0.802774 | 4.782479e-49 | -8.615850e-47 |
| Msa0910960 | Msa0992510 | 0.944809 | 9.833329e-104 | -8.615850e-47 |
| Msa0910960 | Msa1047760 | 0.823825 | 1.124551e-53 | -8.615850e-47 |
| Msa0910960 | Msa1118860 | 0.812762 | 3.602045e-51 | -8.615850e-47 |
| Msa0910960 | Msa1133590 | 0.820320 | 7.301681e-53 | -8.615850e-47 |
| Msa0910960 | Msa1178580 | 0.819323 | 1.233428e-52 | -8.615850e-47 |
| Msa0910960 | Msa1184230 | 0.815748 | 7.886921e-52 | -8.615850e-47 |
| Msa0910960 | Msa1190100 | -0.810098 | 1.364798e-50 | -8.615850e-47 |
| Msa0910960 | Msa1228040 | 0.856142 | 3.928093e-62 | -8.615850e-47 |
| Msa0910960 | Msa1233850 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0910960 | Msa1252970 | 0.801633 | 8.211183e-49 | -8.615850e-47 |
| Msa0910960 | Msa1258030 | -0.812857 | 3.432328e-51 | -8.615850e-47 |
| Msa0910960 | Msa1260220 | 0.823645 | 1.239262e-53 | -8.615850e-47 |
| Msa0910960 | Msa1271130 | 0.802066 | 6.690908e-49 | -8.615850e-47 |
| Msa0910960 | Msa1276150 | 0.819952 | 8.864201e-53 | -8.615850e-47 |
| Msa0910960 | Msa1292020 | 0.804396 | 2.203868e-49 | -8.615850e-47 |
| Msa0910960 | Msa1308220 | 0.819128 | 1.366364e-52 | -8.615850e-47 |
| Msa0910960 | Msa1327640 | 0.825224 | 5.267411e-54 | -8.615850e-47 |
| Msa0910960 | Msa1341300 | 0.827817 | 1.268607e-54 | -8.615850e-47 |
| Msa0910960 | Msa1356960 | 0.819386 | 1.193249e-52 | -8.615850e-47 |
| Msa0910960 | Msa1373850 | 0.829725 | 4.382916e-55 | -8.615850e-47 |
| Msa0910960 | Msa1392980 | 0.834414 | 3.038821e-56 | -8.615850e-47 |
| Msa0910960 | Msa1414820 | 0.845335 | 4.330696e-59 | -8.615850e-47 |
| Msa0910960 | Msa1419690 | 0.801433 | 9.026242e-49 | -8.615850e-47 |
| Msa0910960 | Msa1433700 | 0.833156 | 6.269760e-56 | -8.615850e-47 |
| Msa0910960 | Msa1440830 | 0.811758 | 5.965331e-51 | -8.615850e-47 |
| Msa0910960 | Msa1443180 | 0.827264 | 1.721921e-54 | -8.615850e-47 |
| Msa0910960 | Msa1458290 | 0.805245 | 1.465055e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910960 | MtrunA17_Chr6g0472501 | 94.479 | 326 | 3 | 1 | 1 | 311 | 1 | 326 | 0.0 | 616 |
| Msa0910960 | MtrunA17_Chr4g0009841 | 58.896 | 326 | 107 | 5 | 6 | 308 | 8 | 329 | 2.45e-130 | 375 |
| Msa0910960 | MtrunA17_Chr1g0203681 | 59.509 | 326 | 97 | 5 | 4 | 311 | 10 | 318 | 8.36e-125 | 359 |
| Msa0910960 | MtrunA17_Chr2g0328271 | 59.259 | 297 | 100 | 3 | 34 | 311 | 43 | 337 | 2.73e-115 | 338 |
| Msa0910960 | MtrunA17_Chr7g0238701 | 57.627 | 295 | 104 | 4 | 34 | 311 | 25 | 315 | 1.17e-114 | 335 |
| Msa0910960 | MtrunA17_Chr2g0332941 | 52.899 | 276 | 107 | 4 | 34 | 287 | 30 | 304 | 6.88e-93 | 278 |
| Msa0910960 | MtrunA17_Chr3g0115331 | 40.878 | 296 | 150 | 3 | 37 | 310 | 42 | 334 | 1.75e-63 | 205 |
| Msa0910960 | MtrunA17_Chr2g0322601 | 38.953 | 172 | 81 | 4 | 136 | 305 | 18 | 167 | 5.73e-24 | 96.3 |
| Msa0910960 | MtrunA17_Chr2g0322611 | 40.860 | 93 | 40 | 1 | 90 | 167 | 1 | 93 | 2.96e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910960 | AT1G63120.1 | 61.920 | 323 | 102 | 3 | 1 | 308 | 1 | 317 | 9.49e-134 | 382 |
| Msa0910960 | AT5G07250.1 | 60.417 | 336 | 105 | 4 | 1 | 310 | 12 | 345 | 1.17e-128 | 370 |
| Msa0910960 | AT2G29050.1 | 60.133 | 301 | 98 | 4 | 29 | 311 | 48 | 344 | 1.29e-125 | 364 |
| Msa0910960 | AT1G12750.4 | 56.173 | 324 | 109 | 4 | 1 | 308 | 1 | 307 | 1.27e-123 | 356 |
| Msa0910960 | AT1G12750.7 | 56.173 | 324 | 109 | 4 | 1 | 308 | 1 | 307 | 1.27e-123 | 356 |
| Msa0910960 | AT1G12750.6 | 56.173 | 324 | 109 | 4 | 1 | 308 | 1 | 307 | 1.27e-123 | 356 |
| Msa0910960 | AT1G12750.3 | 56.173 | 324 | 109 | 4 | 1 | 308 | 1 | 307 | 1.27e-123 | 356 |
| Msa0910960 | AT1G12750.1 | 56.173 | 324 | 109 | 4 | 1 | 308 | 1 | 307 | 1.27e-123 | 356 |
| Msa0910960 | AT3G53780.2 | 50.147 | 341 | 130 | 5 | 3 | 309 | 13 | 347 | 1.17e-109 | 324 |
| Msa0910960 | AT2G29050.2 | 54.125 | 303 | 88 | 6 | 29 | 284 | 48 | 346 | 1.06e-103 | 307 |
| Msa0910960 | AT3G53780.3 | 49.836 | 305 | 113 | 5 | 3 | 273 | 13 | 311 | 3.96e-92 | 276 |
| Msa0910960 | AT5G07250.2 | 49.405 | 336 | 95 | 5 | 1 | 310 | 12 | 298 | 9.88e-90 | 270 |
| Msa0910960 | AT1G52580.1 | 49.826 | 287 | 118 | 6 | 23 | 287 | 17 | 299 | 2.13e-88 | 267 |
| Msa0910960 | AT3G53780.1 | 53.744 | 227 | 88 | 2 | 100 | 311 | 1 | 225 | 7.03e-84 | 254 |
| Msa0910960 | AT4G23070.1 | 49.533 | 321 | 134 | 4 | 2 | 306 | 4 | 312 | 7.50e-83 | 253 |
| Msa0910960 | AT1G77860.1 | 40.741 | 297 | 148 | 4 | 37 | 310 | 48 | 339 | 1.20e-75 | 236 |
| Msa0910960 | AT1G77860.2 | 40.741 | 297 | 148 | 4 | 37 | 310 | 48 | 339 | 2.13e-75 | 236 |
| Msa0910960 | AT1G12750.2 | 54.067 | 209 | 64 | 3 | 1 | 194 | 1 | 192 | 5.68e-72 | 221 |
| Msa0910960 | AT1G12750.5 | 54.369 | 206 | 62 | 3 | 1 | 191 | 1 | 189 | 1.24e-71 | 221 |
| Msa0910960 | AT1G25290.2 | 30.128 | 156 | 92 | 3 | 104 | 243 | 157 | 311 | 1.29e-11 | 65.1 |
Find 91 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACTACACTCACTTTAT+TGG | 0.122578 | 6_2:-16106593 | None:intergenic |
| TTTCCAAACTTTCCTTCTTT+TGG | 0.166268 | 6_2:+16103977 | Msa0910960:five_prime_UTR |
| AAGGAAAGTTTGGAAATTTA+TGG | 0.166349 | 6_2:-16103970 | None:intergenic |
| AGGTTTACCAATATGTTCTA+TGG | 0.211456 | 6_2:+16107399 | Msa0910960:CDS |
| ATCAGTTATTAGTTTGTCTT+TGG | 0.242343 | 6_2:+16108451 | Msa0910960:three_prime_UTR |
| TTCCTTCCCCGTCCTCAATT+TGG | 0.259184 | 6_2:+16107323 | Msa0910960:CDS |
| AGCATCTCCGTTGGTGCTTC+CGG | 0.298447 | 6_2:+16106508 | Msa0910960:CDS |
| CATGATGTCCAACTAGTTTC+TGG | 0.304655 | 6_2:-16104135 | None:intergenic |
| TATCCAAAAGAAGGAAAGTT+TGG | 0.304895 | 6_2:-16103980 | None:intergenic |
| ACTAATAACTGATTCTTATA+AGG | 0.319688 | 6_2:-16108441 | None:intergenic |
| CATGTGTTCCAACTTCTAAA+TGG | 0.341794 | 6_2:+16108323 | Msa0910960:CDS |
| GGAATCGTTTACCTAGTATC+TGG | 0.345805 | 6_2:+16106445 | Msa0910960:CDS |
| GTTTATTATTGTCATCAATC+TGG | 0.356206 | 6_2:+16107223 | Msa0910960:CDS |
| AATATATATCATATAGATAA+AGG | 0.360493 | 6_2:+16108500 | Msa0910960:three_prime_UTR |
| GTTTACCTAGTATCTGGATT+TGG | 0.367101 | 6_2:+16106451 | Msa0910960:CDS |
| GAGAAGATGGGAAGTGGGTT+TGG | 0.375626 | 6_2:-16103930 | None:intergenic |
| GGAGACTTGTCTCATGCATT+TGG | 0.378901 | 6_2:+16105959 | Msa0910960:CDS |
| TCACAACAGCATCCCACTTA+AGG | 0.382515 | 6_2:-16105921 | None:intergenic |
| AGAGTGAGATATAGAGAAGA+TGG | 0.385708 | 6_2:-16103943 | None:intergenic |
| ATTGTCATCAATCTGGTGAT+TGG | 0.392947 | 6_2:+16107230 | Msa0910960:CDS |
| AACCCTTACGTTTCAGAAGA+AGG | 0.412425 | 6_2:-16104318 | None:intergenic |
| TCGCATTTCCATTTAGAAGT+TGG | 0.417696 | 6_2:-16108331 | None:intergenic |
| CTCTCGTACTATTGATTGCC+TGG | 0.425859 | 6_2:+16107429 | Msa0910960:CDS |
| TGGTTTAGTGATGCTATTGC+GGG | 0.429270 | 6_2:+16108258 | Msa0910960:CDS |
| TTCCTAACAGGATTTCTCCT+TGG | 0.430146 | 6_2:+16107293 | Msa0910960:CDS |
| CACAACAGCATCCCACTTAA+GGG | 0.436258 | 6_2:-16105920 | None:intergenic |
| ACTCCAGTTTGTGATAAGTT+CGG | 0.447369 | 6_2:-16106563 | None:intergenic |
| ACACGCTGGAATCATTCATT+TGG | 0.450645 | 6_2:+16105984 | Msa0910960:CDS |
| TACCTAGTATCTGGATTTGG+TGG | 0.452294 | 6_2:+16106454 | Msa0910960:CDS |
| AGATTTCACTCTTCTGCAAC+CGG | 0.452910 | 6_2:-16108566 | None:intergenic |
| GATATAGAGAAGATGGGAAG+TGG | 0.458170 | 6_2:-16103936 | None:intergenic |
| GCGATGACAGTTAAACGAAT+AGG | 0.466599 | 6_2:+16108350 | Msa0910960:exon |
| GAGTGAGATATAGAGAAGAT+GGG | 0.470429 | 6_2:-16103942 | None:intergenic |
| AGAGATCTAGAGAGAGATGG+AGG | 0.474513 | 6_2:+16104054 | Msa0910960:CDS |
| GGAAGTGGGTTTGGTGAGAG+AGG | 0.480292 | 6_2:-16103921 | None:intergenic |
| TTCCCCGTCCTCAATTTGGT+TGG | 0.484649 | 6_2:+16107327 | Msa0910960:CDS |
| TTTCCGAACTTATCACAAAC+TGG | 0.485212 | 6_2:+16106560 | Msa0910960:CDS |
| TAGAAGTTGGAACACATGTC+AGG | 0.485216 | 6_2:-16108318 | None:intergenic |
| ATATAGAGAAGATGGGAAGT+GGG | 0.486608 | 6_2:-16103935 | None:intergenic |
| GGTTTACCAATATGTTCTAT+GGG | 0.487504 | 6_2:+16107400 | Msa0910960:CDS |
| ATAGCTATACATAAAAGAAC+AGG | 0.488821 | 6_2:-16108384 | None:intergenic |
| TGGAAATTTGCAGTGAGGAT+AGG | 0.489071 | 6_2:+16106424 | Msa0910960:intron |
| TTGAAAGAGAATCCTTTGCT+TGG | 0.490540 | 6_2:+16104294 | Msa0910960:CDS |
| TTGAATGGTAGGTTATCCAT+TGG | 0.492130 | 6_2:+16108238 | Msa0910960:intron |
| ACCTAGTATCTGGATTTGGT+GGG | 0.495725 | 6_2:+16106455 | Msa0910960:CDS |
| CAGAAACTAGTTGGACATCA+TGG | 0.498180 | 6_2:+16104136 | Msa0910960:CDS |
| AACCAAGGAGAAATCCTGTT+AGG | 0.498873 | 6_2:-16107295 | None:intergenic |
| AGCAAAGGATTCTCTTTCAA+AGG | 0.499402 | 6_2:-16104291 | None:intergenic |
| ATACAACCCATAGAACATAT+TGG | 0.500183 | 6_2:-16107406 | None:intergenic |
| CGAAGATGGGAGCCCTTAAG+TGG | 0.502536 | 6_2:+16105908 | Msa0910960:CDS |
| TTGAACCAATATCCAAAAGA+AGG | 0.504240 | 6_2:-16103989 | None:intergenic |
| GACTTGAGGCGAACACCAGC+AGG | 0.504828 | 6_2:-16107368 | None:intergenic |
| GTTATGATCCAGAAACTAGT+TGG | 0.521904 | 6_2:+16104127 | Msa0910960:CDS |
| GCTTGTACCTATGTTTGTTG+TGG | 0.524538 | 6_2:+16104158 | Msa0910960:CDS |
| TTGTGAATCATCACCAAGGA+TGG | 0.525415 | 6_2:+16105938 | Msa0910960:CDS |
| AAGAGCACCGGAAGCACCAA+CGG | 0.530069 | 6_2:-16106515 | None:intergenic |
| ATGAGACAAGTCTCCATCCT+TGG | 0.532446 | 6_2:-16105951 | None:intergenic |
| GGATCATAACCACTTGAAGT+TGG | 0.535918 | 6_2:-16104114 | None:intergenic |
| GAAGTGGGTTTGGTGAGAGA+GGG | 0.537929 | 6_2:-16103920 | None:intergenic |
| GCGGATACGACCACTGCCAT+TGG | 0.539605 | 6_2:+16108287 | Msa0910960:CDS |
| AAAAGAACGACAAGATCAGC+AGG | 0.541526 | 6_2:-16103844 | None:intergenic |
| ACGACAAGATCAGCAGGTAG+TGG | 0.548594 | 6_2:-16103838 | None:intergenic |
| TCCCACCAAATCCAGATACT+AGG | 0.555103 | 6_2:-16106456 | None:intergenic |
| TCGCCTCAAGTCTAAGTACA+AGG | 0.555196 | 6_2:+16107379 | Msa0910960:CDS |
| TGTGATAAGTTCGGAAAGCA+TGG | 0.557185 | 6_2:-16106554 | None:intergenic |
| TAACCAACCAAATTGAGGAC+GGG | 0.559677 | 6_2:-16107330 | None:intergenic |
| AGGGATTGTTGAATCTGAAA+CGG | 0.568705 | 6_2:-16103901 | None:intergenic |
| GGTAGTGACACCAATGGCAG+TGG | 0.569166 | 6_2:-16108297 | None:intergenic |
| TTGGTTTAGTGATGCTATTG+CGG | 0.570398 | 6_2:+16108257 | Msa0910960:CDS |
| GCACAGCGACATGTTCCTGC+TGG | 0.570742 | 6_2:+16107353 | Msa0910960:CDS |
| AGATTAGCCACAACAAACAT+AGG | 0.571657 | 6_2:-16104165 | None:intergenic |
| TGTGCTAACCAACCAAATTG+AGG | 0.571688 | 6_2:-16107335 | None:intergenic |
| CAATAGCATCACTAAACCAA+TGG | 0.573374 | 6_2:-16108254 | None:intergenic |
| GGGAGAGATCTAGAGAGAGA+TGG | 0.574429 | 6_2:+16104051 | Msa0910960:CDS |
| TCATAACCACTTGAAGTTGG+TGG | 0.579347 | 6_2:-16104111 | None:intergenic |
| GCTGTTCCACCAACTTCAAG+TGG | 0.584755 | 6_2:+16104105 | Msa0910960:CDS |
| TCAGAAGAAGGACCAAGCAA+AGG | 0.588996 | 6_2:-16104306 | None:intergenic |
| ATGCTATTGCGGGGTGAAAG+CGG | 0.592655 | 6_2:+16108268 | Msa0910960:CDS |
| TAAAAGAACAGGAATAGCGC+AGG | 0.608845 | 6_2:-16108373 | None:intergenic |
| TCATGCATTTGGTTACACGC+TGG | 0.611101 | 6_2:+16105970 | Msa0910960:CDS |
| TGAGCAAAATTGTCGACATG+TGG | 0.620566 | 6_2:-16107260 | None:intergenic |
| AACCAAATTGAGGACGGGGA+AGG | 0.621571 | 6_2:-16107325 | None:intergenic |
| AACCAACCAAATTGAGGACG+GGG | 0.621889 | 6_2:-16107329 | None:intergenic |
| CTAACCAACCAAATTGAGGA+CGG | 0.644997 | 6_2:-16107331 | None:intergenic |
| AAACCTTGTACTTAGACTTG+AGG | 0.651465 | 6_2:-16107382 | None:intergenic |
| GGGGAAGGAAAATGAAACCA+AGG | 0.657876 | 6_2:-16107310 | None:intergenic |
| GAGATCTAGAGAGAGATGGA+GGG | 0.661813 | 6_2:+16104055 | Msa0910960:CDS |
| GAAGATGGGAGCCCTTAAGT+GGG | 0.681846 | 6_2:+16105909 | Msa0910960:CDS |
| ATGTCAGGTAGTGACACCAA+TGG | 0.701971 | 6_2:-16108303 | None:intergenic |
| GGTTTAGTGATGCTATTGCG+GGG | 0.740371 | 6_2:+16108259 | Msa0910960:CDS |
| GCTGTTGTGAATCATCACCA+AGG | 0.777652 | 6_2:+16105934 | Msa0910960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATCATATAGATAA+AGG | + | chr6_2:16108500-16108519 | Msa0910960:three_prime_UTR | 10.0% |
| !!! | ATTTCAATAATATATTTTAC+CGG | + | chr6_2:16108547-16108566 | Msa0910960:three_prime_UTR | 10.0% |
| !!! | TATTATTCATAAGTTTGTTA+AGG | + | chr6_2:16104433-16104452 | Msa0910960:intron | 15.0% |
| !!! | AGTTAAATTGTTTTTGTATA+TGG | + | chr6_2:16104679-16104698 | Msa0910960:intron | 15.0% |
| !! | TTGATATAAAAATAAGATCA+AGG | - | chr6_2:16105754-16105773 | None:intergenic | 15.0% |
| !!! | TTATTTTTATATCAATGACT+TGG | + | chr6_2:16105759-16105778 | Msa0910960:intron | 15.0% |
| !!! | ATTTTACACAAATATAGTAA+TGG | + | chr6_2:16106296-16106315 | Msa0910960:intron | 15.0% |
| !! | TAATATCATCGTTTAATAAT+AGG | - | chr6_2:16107764-16107783 | None:intergenic | 15.0% |
| !!! | TTACAAATTGTTTCTTTTTT+TGG | + | chr6_2:16108412-16108431 | Msa0910960:three_prime_UTR | 15.0% |
| !!! | TACATATCTGCATTTTTTTT+TGG | - | chr6_2:16105077-16105096 | None:intergenic | 20.0% |
| !!! | TTATGATTTTGTTTTAGCTT+AGG | + | chr6_2:16105196-16105215 | Msa0910960:intron | 20.0% |
| !!! | TATGATTTTGTTTTAGCTTA+GGG | + | chr6_2:16105197-16105216 | Msa0910960:intron | 20.0% |
| !!! | TTAGTGAAATTTTCAGTTTT+TGG | + | chr6_2:16105387-16105406 | Msa0910960:intron | 20.0% |
| !! | AAACATGAAAAACAAAACAT+GGG | - | chr6_2:16105454-16105473 | None:intergenic | 20.0% |
| !! | AAAACATGAAAAACAAAACA+TGG | - | chr6_2:16105455-16105474 | None:intergenic | 20.0% |
| !! | TATCAAAAACTAATATGTAG+TGG | + | chr6_2:16105573-16105592 | Msa0910960:intron | 20.0% |
| !!! | TTCGATTTTGTTTAAGATTA+GGG | + | chr6_2:16105666-16105685 | Msa0910960:intron | 20.0% |
| !! | TATAAAAATAAGATCAAGGT+AGG | - | chr6_2:16105750-16105769 | None:intergenic | 20.0% |
| !! | TTTGTGTAAAATTCACTAAA+TGG | - | chr6_2:16106288-16106307 | None:intergenic | 20.0% |
| !!! | CAAATTTCCAACAAATTTTT+TGG | - | chr6_2:16106414-16106433 | None:intergenic | 20.0% |
| !! | AAGTTAACAAAAGAAAAAGT+TGG | - | chr6_2:16106871-16106890 | None:intergenic | 20.0% |
| !! | ATATGACTTGAATTATTTAG+TGG | + | chr6_2:16106925-16106944 | Msa0910960:intron | 20.0% |
| !! | ACAACTAACAACAAAATTAT+AGG | - | chr6_2:16106968-16106987 | None:intergenic | 20.0% |
| !! | AAGATGTTTAATCAAATTAG+TGG | - | chr6_2:16107101-16107120 | None:intergenic | 20.0% |
| !! | TGATTAAACATCTTATATCT+AGG | + | chr6_2:16107107-16107126 | Msa0910960:intron | 20.0% |
| !! | TCGTTTAATAATAGGAATTT+GGG | - | chr6_2:16107756-16107775 | None:intergenic | 20.0% |
| !! | ATCGTTTAATAATAGGAATT+TGG | - | chr6_2:16107757-16107776 | None:intergenic | 20.0% |
| !! | ACAATTTATAAAACCTCTAA+AGG | - | chr6_2:16108116-16108135 | None:intergenic | 20.0% |
| !! | AATTGTCATTATCTATTGTT+AGG | + | chr6_2:16108130-16108149 | Msa0910960:intron | 20.0% |
| !! | TATCTATTGTTAGGAAAATA+AGG | + | chr6_2:16108139-16108158 | Msa0910960:intron | 20.0% |
| !!! | ACTAATAACTGATTCTTATA+AGG | - | chr6_2:16108444-16108463 | None:intergenic | 20.0% |
| ! | AAGGAAAGTTTGGAAATTTA+TGG | - | chr6_2:16103973-16103992 | None:intergenic | 25.0% |
| ! | AATTGTCCTAGTAAAAATCT+TGG | + | chr6_2:16104219-16104238 | Msa0910960:CDS | 25.0% |
| !! | TCAAAACCAAGATTTTTACT+AGG | - | chr6_2:16104228-16104247 | None:intergenic | 25.0% |
| !!! | AGTAAAAATCTTGGTTTTGA+TGG | + | chr6_2:16104228-16104247 | Msa0910960:CDS | 25.0% |
| !! | TTTTTGTATATGGTATAAGC+TGG | + | chr6_2:16104689-16104708 | Msa0910960:intron | 25.0% |
| ! | TCTCTACAATATCAATAATC+AGG | - | chr6_2:16104883-16104902 | None:intergenic | 25.0% |
| ! | CATAAAATACAATTATGTCG+TGG | + | chr6_2:16105130-16105149 | Msa0910960:intron | 25.0% |
| !!! | ATGATTTTGTTTTAGCTTAG+GGG | + | chr6_2:16105198-16105217 | Msa0910960:intron | 25.0% |
| ! | ATTAACATAAAAACCAGATC+AGG | - | chr6_2:16105290-16105309 | None:intergenic | 25.0% |
| ! | AATGTTATAGTACTTTGACT+TGG | + | chr6_2:16105307-16105326 | Msa0910960:intron | 25.0% |
| ! | ACTAAACAGGGTTTAAATAA+AGG | - | chr6_2:16105618-16105637 | None:intergenic | 25.0% |
| ! | CTAATCTTAAACAAAATCGA+AGG | - | chr6_2:16105667-16105686 | None:intergenic | 25.0% |
| !!! | CTTCGATTTTGTTTAAGATT+AGG | + | chr6_2:16105665-16105684 | Msa0910960:intron | 25.0% |
| !!! | TCGATTTTGTTTAAGATTAG+GGG | + | chr6_2:16105667-16105686 | Msa0910960:intron | 25.0% |
| !! | GAGTTACATGAAAATTTGTT+TGG | + | chr6_2:16105690-16105709 | Msa0910960:intron | 25.0% |
| ! | ATGTCAAATATCATCTATAG+TGG | - | chr6_2:16106177-16106196 | None:intergenic | 25.0% |
| ! | TTGTATTAAATAGCGTATTG+CGG | + | chr6_2:16106201-16106220 | Msa0910960:intron | 25.0% |
| ! | ATTAACTACACTCACTTTAT+TGG | - | chr6_2:16106596-16106615 | None:intergenic | 25.0% |
| ! | ATTGACAAAAGAAAAAGGAT+TGG | - | chr6_2:16106901-16106920 | None:intergenic | 25.0% |
| ! | TGTCAATTGACAAAAGAAAA+AGG | - | chr6_2:16106906-16106925 | None:intergenic | 25.0% |
| ! | CTTATTGACAATGTATCTTA+TGG | + | chr6_2:16107011-16107030 | Msa0910960:intron | 25.0% |
| ! | GTTTATTATTGTCATCAATC+TGG | + | chr6_2:16107223-16107242 | Msa0910960:CDS | 25.0% |
| ! | TTAATAATAGGAATTTGGGA+CGG | - | chr6_2:16107752-16107771 | None:intergenic | 25.0% |
| ! | ACCACATGTTAGTTAAATAA+AGG | + | chr6_2:16108004-16108023 | Msa0910960:intron | 25.0% |
| !! | TCCTTTATTTAACTAACATG+TGG | - | chr6_2:16108008-16108027 | None:intergenic | 25.0% |
| ! | AATTTAAATGTGACCTTTAG+AGG | + | chr6_2:16108100-16108119 | Msa0910960:intron | 25.0% |
| ! | ATAGCTATACATAAAAGAAC+AGG | - | chr6_2:16108387-16108406 | None:intergenic | 25.0% |
| !!! | ATCAGTTATTAGTTTGTCTT+TGG | + | chr6_2:16108451-16108470 | Msa0910960:three_prime_UTR | 25.0% |
| !! | GATTTTATGTGTATTTTGTG+TGG | + | chr6_2:16108473-16108492 | Msa0910960:three_prime_UTR | 25.0% |
| ! | TTTCCAAACTTTCCTTCTTT+TGG | + | chr6_2:16103977-16103996 | Msa0910960:five_prime_UTR | 30.0% |
| TATCCAAAAGAAGGAAAGTT+TGG | - | chr6_2:16103983-16104002 | None:intergenic | 30.0% | |
| ! | ACTTTCCTTCTTTTGGATAT+TGG | + | chr6_2:16103984-16104003 | Msa0910960:five_prime_UTR | 30.0% |
| TTGAACCAATATCCAAAAGA+AGG | - | chr6_2:16103992-16104011 | None:intergenic | 30.0% | |
| AGAGAAAAAGAAACATGTCT+GGG | + | chr6_2:16104031-16104050 | Msa0910960:exon | 30.0% | |
| !!! | CTTGTGTTTTGAAGTTTCTT+GGG | + | chr6_2:16104253-16104272 | Msa0910960:CDS | 30.0% |
| AAAAATGAGTCAATCCAATC+AGG | + | chr6_2:16104552-16104571 | Msa0910960:intron | 30.0% | |
| AGCAATACCAAAATCATCAA+AGG | - | chr6_2:16104579-16104598 | None:intergenic | 30.0% | |
| !! | ATGATTTTGGTATTGCTTTC+AGG | + | chr6_2:16104582-16104601 | Msa0910960:intron | 30.0% |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr6_2:16104608-16104627 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr6_2:16104609-16104628 | None:intergenic | 30.0% | |
| AACAGCTTATTTGTAGCTTA+AGG | + | chr6_2:16104618-16104637 | Msa0910960:intron | 30.0% | |
| ACACAAATAAGAATCCATAC+AGG | + | chr6_2:16104831-16104850 | Msa0910960:intron | 30.0% | |
| ! | CTAAACCAGACAAATTTTCA+TGG | - | chr6_2:16105229-16105248 | None:intergenic | 30.0% |
| ! | ATTTGTCTGGTTTAGTGAAT+TGG | + | chr6_2:16105234-16105253 | Msa0910960:intron | 30.0% |
| TGGTTTAGTGAATTGGATTT+GGG | + | chr6_2:16105241-16105260 | Msa0910960:intron | 30.0% | |
| GCATGATTATCTACTAAACA+GGG | - | chr6_2:16105630-16105649 | None:intergenic | 30.0% | |
| TGCATGATTATCTACTAAAC+AGG | - | chr6_2:16105631-16105650 | None:intergenic | 30.0% | |
| !! | CGATTTTGTTTAAGATTAGG+GGG | + | chr6_2:16105668-16105687 | Msa0910960:intron | 30.0% |
| ! | ATTTGTTTGGTTCAGTGAAT+TGG | + | chr6_2:16105703-16105722 | Msa0910960:intron | 30.0% |
| TCAGATATGAGTATCTAAAC+AGG | - | chr6_2:16105786-16105805 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGACTAACGAAGA+TGG | + | chr6_2:16105894-16105913 | Msa0910960:intron | 30.0% |
| !! | TTTTGAAGACTAACGAAGAT+GGG | + | chr6_2:16105895-16105914 | Msa0910960:intron | 30.0% |
| CTTGTACACATAAATTCATC+AGG | - | chr6_2:16106370-16106389 | None:intergenic | 30.0% | |
| GTTGTGACCAAAAAATTTGT+TGG | + | chr6_2:16106404-16106423 | Msa0910960:intron | 30.0% | |
| GAGATTCATCATAGTGAATT+GGG | - | chr6_2:16106810-16106829 | None:intergenic | 30.0% | |
| AACTTTGAGTATCAGAGAAA+TGG | - | chr6_2:16107069-16107088 | None:intergenic | 30.0% | |
| TTTGATTCTGTACACTATAG+TGG | + | chr6_2:16107135-16107154 | Msa0910960:intron | 30.0% | |
| TTGATTCTGTACACTATAGT+GGG | + | chr6_2:16107136-16107155 | Msa0910960:intron | 30.0% | |
| ACCTACAAGATACAGAAAAA+CGG | - | chr6_2:16107182-16107201 | None:intergenic | 30.0% | |
| ! | TCGACAATTTTGCTCATATT+GGG | + | chr6_2:16107267-16107286 | Msa0910960:CDS | 30.0% |
| AGGTTTACCAATATGTTCTA+TGG | + | chr6_2:16107399-16107418 | Msa0910960:CDS | 30.0% | |
| GGTTTACCAATATGTTCTAT+GGG | + | chr6_2:16107400-16107419 | Msa0910960:CDS | 30.0% | |
| ATACAACCCATAGAACATAT+TGG | - | chr6_2:16107409-16107428 | None:intergenic | 30.0% | |
| TAACAGTTATGTTGCTAATG+AGG | - | chr6_2:16107473-16107492 | None:intergenic | 30.0% | |
| TCATTAGCAACATAACTGTT+AGG | + | chr6_2:16107472-16107491 | Msa0910960:intron | 30.0% | |
| CATTAGCAACATAACTGTTA+GGG | + | chr6_2:16107473-16107492 | Msa0910960:intron | 30.0% | |
| TCATGAATAGTCCTAAACAA+GGG | - | chr6_2:16107550-16107569 | None:intergenic | 30.0% | |
| ATCATGAATAGTCCTAAACA+AGG | - | chr6_2:16107551-16107570 | None:intergenic | 30.0% | |
| ! | CTTTTACCAAACTGTTGTAA+TGG | - | chr6_2:16107602-16107621 | None:intergenic | 30.0% |
| ACCCGAATTGTATAAAAGTT+CGG | + | chr6_2:16107651-16107670 | Msa0910960:intron | 30.0% | |
| ! | ACCGAACTTTTATACAATTC+GGG | - | chr6_2:16107655-16107674 | None:intergenic | 30.0% |
| ! | CACCGAACTTTTATACAATT+CGG | - | chr6_2:16107656-16107675 | None:intergenic | 30.0% |
| CTAATATTCAGTCAAGTGTT+TGG | - | chr6_2:16107790-16107809 | None:intergenic | 30.0% | |
| CAAACACTTGACTGAATATT+AGG | + | chr6_2:16107788-16107807 | Msa0910960:intron | 30.0% | |
| ! | CTTCACAGTTTGATTCTTTT+CGG | - | chr6_2:16107841-16107860 | None:intergenic | 30.0% |
| CTATTGTTAGGAAAATAAGG+TGG | + | chr6_2:16108142-16108161 | Msa0910960:intron | 30.0% | |
| AGGGATTGTTGAATCTGAAA+CGG | - | chr6_2:16103904-16103923 | None:intergenic | 35.0% | |
| ATATAGAGAAGATGGGAAGT+GGG | - | chr6_2:16103938-16103957 | None:intergenic | 35.0% | |
| GAGTGAGATATAGAGAAGAT+GGG | - | chr6_2:16103945-16103964 | None:intergenic | 35.0% | |
| AGAGTGAGATATAGAGAAGA+TGG | - | chr6_2:16103946-16103965 | None:intergenic | 35.0% | |
| GAGAGAAAAAGAAACATGTC+TGG | + | chr6_2:16104030-16104049 | Msa0910960:exon | 35.0% | |
| GTTATGATCCAGAAACTAGT+TGG | + | chr6_2:16104127-16104146 | Msa0910960:CDS | 35.0% | |
| ! | AGATTAGCCACAACAAACAT+AGG | - | chr6_2:16104168-16104187 | None:intergenic | 35.0% |
| !!! | GCTTGTGTTTTGAAGTTTCT+TGG | + | chr6_2:16104252-16104271 | Msa0910960:CDS | 35.0% |
| AGCAAAGGATTCTCTTTCAA+AGG | - | chr6_2:16104294-16104313 | None:intergenic | 35.0% | |
| TTGAAAGAGAATCCTTTGCT+TGG | + | chr6_2:16104294-16104313 | Msa0910960:CDS | 35.0% | |
| AAATCATCAAAGGACCTGAT+TGG | - | chr6_2:16104569-16104588 | None:intergenic | 35.0% | |
| !! | ATCAGGTCCTTTGATGATTT+TGG | + | chr6_2:16104569-16104588 | Msa0910960:intron | 35.0% |
| TATTTGTAGCTTAAGGCACA+AGG | + | chr6_2:16104625-16104644 | Msa0910960:intron | 35.0% | |
| ATTTGTAGCTTAAGGCACAA+GGG | + | chr6_2:16104626-16104645 | Msa0910960:intron | 35.0% | |
| ATAAATTAGCCCACCTAAAC+TGG | - | chr6_2:16105019-16105038 | None:intergenic | 35.0% | |
| !! | TTTAGGTGGGCTAATTTATC+CGG | + | chr6_2:16105020-16105039 | Msa0910960:intron | 35.0% |
| ATAAATTAGCCCACCTAAAC+TGG | - | chr6_2:16105019-16105038 | None:intergenic | 35.0% | |
| !!! | ATTTTGTTTTAGCTTAGGGG+TGG | + | chr6_2:16105201-16105220 | Msa0910960:intron | 35.0% |
| TGGTTCCATGAAAATTTGTC+TGG | + | chr6_2:16105221-16105240 | Msa0910960:intron | 35.0% | |
| CTGGTTTAGTGAATTGGATT+TGG | + | chr6_2:16105240-16105259 | Msa0910960:intron | 35.0% | |
| GGTTTAGTGAATTGGATTTG+GGG | + | chr6_2:16105242-16105261 | Msa0910960:intron | 35.0% | |
| GTTTAGTGAATTGGATTTGG+GGG | + | chr6_2:16105243-16105262 | Msa0910960:intron | 35.0% | |
| ! | CTTTTAGTCGAAAACTGTCA+TGG | + | chr6_2:16105525-16105544 | Msa0910960:intron | 35.0% |
| TTGGTTCAGTGAATTGGATA+TGG | + | chr6_2:16105709-16105728 | Msa0910960:intron | 35.0% | |
| TGGTTCAGTGAATTGGATAT+GGG | + | chr6_2:16105710-16105729 | Msa0910960:intron | 35.0% | |
| TAGTACGGTAGCATAGATTT+AGG | + | chr6_2:16105836-16105855 | Msa0910960:intron | 35.0% | |
| ATTCGCCTTGAACAACAATT+TGG | + | chr6_2:16106039-16106058 | Msa0910960:intron | 35.0% | |
| TTCGCCTTGAACAACAATTT+GGG | + | chr6_2:16106040-16106059 | Msa0910960:intron | 35.0% | |
| ! | CTTGAACAACAATTTGGGTT+CGG | + | chr6_2:16106045-16106064 | Msa0910960:intron | 35.0% |
| TTTGTTGGAAATTTGCAGTG+AGG | + | chr6_2:16106419-16106438 | Msa0910960:intron | 35.0% | |
| GTTTACCTAGTATCTGGATT+TGG | + | chr6_2:16106451-16106470 | Msa0910960:CDS | 35.0% | |
| !! | ATTAGAAAAAGCATCTCCGT+TGG | + | chr6_2:16106499-16106518 | Msa0910960:CDS | 35.0% |
| TTTCCGAACTTATCACAAAC+TGG | + | chr6_2:16106560-16106579 | Msa0910960:CDS | 35.0% | |
| ACTCCAGTTTGTGATAAGTT+CGG | - | chr6_2:16106566-16106585 | None:intergenic | 35.0% | |
| !! | ATCAGATACTCGTATCGATT+GGG | - | chr6_2:16106750-16106769 | None:intergenic | 35.0% |
| GTATCTGATGTGTATCATTC+TGG | + | chr6_2:16106761-16106780 | Msa0910960:intron | 35.0% | |
| CGAGATTCATCATAGTGAAT+TGG | - | chr6_2:16106811-16106830 | None:intergenic | 35.0% | |
| GAGAAATGGTTATCGAATCA+CGG | - | chr6_2:16107055-16107074 | None:intergenic | 35.0% | |
| !! | ACCGTTTTTCTGTATCTTGT+AGG | + | chr6_2:16107178-16107197 | Msa0910960:intron | 35.0% |
| ATTGTCATCAATCTGGTGAT+TGG | + | chr6_2:16107230-16107249 | Msa0910960:CDS | 35.0% | |
| ! | GTCGACAATTTTGCTCATAT+TGG | + | chr6_2:16107266-16107285 | Msa0910960:CDS | 35.0% |
| ! | CGACAATTTTGCTCATATTG+GGG | + | chr6_2:16107268-16107287 | Msa0910960:CDS | 35.0% |
| ! | GACAATTTTGCTCATATTGG+GGG | + | chr6_2:16107269-16107288 | Msa0910960:CDS | 35.0% |
| AAACCTTGTACTTAGACTTG+AGG | - | chr6_2:16107385-16107404 | None:intergenic | 35.0% | |
| ! | TAAACCAGTAACCCTTGTTT+AGG | + | chr6_2:16107536-16107555 | Msa0910960:intron | 35.0% |
| GACTATTCATGATTCGTTTC+AGG | + | chr6_2:16107558-16107577 | Msa0910960:intron | 35.0% | |
| ! | ATTCATGATTCGTTTCAGGT+AGG | + | chr6_2:16107562-16107581 | Msa0910960:intron | 35.0% |
| ACTGTTGTAATGGTTCAGTT+TGG | - | chr6_2:16107592-16107611 | None:intergenic | 35.0% | |
| ACTGAACCATTACAACAGTT+TGG | + | chr6_2:16107593-16107612 | Msa0910960:intron | 35.0% | |
| GGTAAAAGCTGAACTGTTAA+TGG | + | chr6_2:16107614-16107633 | Msa0910960:intron | 35.0% | |
| ! | AAAGTAGTTCAGGTTAGGTT+CGG | - | chr6_2:16107695-16107714 | None:intergenic | 35.0% |
| ! | CAGTAAAAGTAGTTCAGGTT+AGG | - | chr6_2:16107700-16107719 | None:intergenic | 35.0% |
| GTTAGCAGTAAAAGTAGTTC+AGG | - | chr6_2:16107705-16107724 | None:intergenic | 35.0% | |
| CGAAAAGAATCAAACTGTGA+AGG | + | chr6_2:16107839-16107858 | Msa0910960:intron | 35.0% | |
| !!! | TTCACGAGTTCAGTTTTGTT+CGG | - | chr6_2:16107875-16107894 | None:intergenic | 35.0% |
| CTAAACTGACTAAACTGTGA+CGG | - | chr6_2:16107901-16107920 | None:intergenic | 35.0% | |
| !! | TCAGTTTAGTCTTTTCAGTG+CGG | + | chr6_2:16107912-16107931 | Msa0910960:intron | 35.0% |
| ! | TGGTTTAACGGTTCAGTTTT+TGG | + | chr6_2:16107937-16107956 | Msa0910960:intron | 35.0% |
| ! | CACTGTATTCGTTTGTTGAA+TGG | + | chr6_2:16108223-16108242 | Msa0910960:intron | 35.0% |
| ! | GTATTCGTTTGTTGAATGGT+AGG | + | chr6_2:16108227-16108246 | Msa0910960:intron | 35.0% |
| TTGAATGGTAGGTTATCCAT+TGG | + | chr6_2:16108238-16108257 | Msa0910960:intron | 35.0% | |
| CAATAGCATCACTAAACCAA+TGG | - | chr6_2:16108257-16108276 | None:intergenic | 35.0% | |
| TTGGTTTAGTGATGCTATTG+CGG | + | chr6_2:16108257-16108276 | Msa0910960:CDS | 35.0% | |
| CATGTGTTCCAACTTCTAAA+TGG | + | chr6_2:16108323-16108342 | Msa0910960:CDS | 35.0% | |
| TCGCATTTCCATTTAGAAGT+TGG | - | chr6_2:16108334-16108353 | None:intergenic | 35.0% | |
| AAAAGAACGACAAGATCAGC+AGG | - | chr6_2:16103847-16103866 | None:intergenic | 40.0% | |
| GATATAGAGAAGATGGGAAG+TGG | - | chr6_2:16103939-16103958 | None:intergenic | 40.0% | |
| TCATAACCACTTGAAGTTGG+TGG | - | chr6_2:16104114-16104133 | None:intergenic | 40.0% | |
| GGATCATAACCACTTGAAGT+TGG | - | chr6_2:16104117-16104136 | None:intergenic | 40.0% | |
| ! | CATGATGTCCAACTAGTTTC+TGG | - | chr6_2:16104138-16104157 | None:intergenic | 40.0% |
| CAGAAACTAGTTGGACATCA+TGG | + | chr6_2:16104136-16104155 | Msa0910960:CDS | 40.0% | |
| ! | GCTTGTACCTATGTTTGTTG+TGG | + | chr6_2:16104158-16104177 | Msa0910960:CDS | 40.0% |
| !! | GTCCTTCTTCTGAAACGTAA+GGG | + | chr6_2:16104316-16104335 | Msa0910960:intron | 40.0% |
| AACCCTTACGTTTCAGAAGA+AGG | - | chr6_2:16104321-16104340 | None:intergenic | 40.0% | |
| AAGAATCCATACAGGCTAGT+TGG | + | chr6_2:16104839-16104858 | Msa0910960:intron | 40.0% | |
| AGATATGTAGCTAACCCACT+TGG | + | chr6_2:16104918-16104937 | Msa0910960:intron | 40.0% | |
| GATATGTAGCTAACCCACTT+GGG | + | chr6_2:16104919-16104938 | Msa0910960:intron | 40.0% | |
| ! | AATTTATCCGGTGCCAGTTT+AGG | + | chr6_2:16105032-16105051 | Msa0910960:intron | 40.0% |
| TGTCATGGCAGTCTTAAATG+TGG | + | chr6_2:16105540-16105559 | Msa0910960:intron | 40.0% | |
| !! | AAATCGAAGGCACTTCTACT+AGG | - | chr6_2:16105654-16105673 | None:intergenic | 40.0% |
| GGTTCAGTGAATTGGATATG+GGG | + | chr6_2:16105711-16105730 | Msa0910960:intron | 40.0% | |
| GCCTGAATTCTTGTGTAGTA+CGG | + | chr6_2:16105821-16105840 | Msa0910960:intron | 40.0% | |
| ACCGTACTACACAAGAATTC+AGG | - | chr6_2:16105825-16105844 | None:intergenic | 40.0% | |
| TTGTGAATCATCACCAAGGA+TGG | + | chr6_2:16105938-16105957 | Msa0910960:CDS | 40.0% | |
| ACACGCTGGAATCATTCATT+TGG | + | chr6_2:16105984-16106003 | Msa0910960:CDS | 40.0% | |
| ! | ATGATCAGTCTGGTCTTCAT+TGG | + | chr6_2:16106015-16106034 | Msa0910960:intron | 40.0% |
| ! | CGAACCCAAATTGTTGTTCA+AGG | - | chr6_2:16106047-16106066 | None:intergenic | 40.0% |
| CCTTTCAGTGTCGTCAATTA+CGG | + | chr6_2:16106106-16106125 | Msa0910960:intron | 40.0% | |
| TTACGGATCGGTGAAAATAG+CGG | + | chr6_2:16106123-16106142 | Msa0910960:intron | 40.0% | |
| ATAGTGGCACTAAAGTGTAG+CGG | - | chr6_2:16106161-16106180 | None:intergenic | 40.0% | |
| GGTAAATAAGCTTTGCAGAC+AGG | - | chr6_2:16106349-16106368 | None:intergenic | 40.0% | |
| TGGAAATTTGCAGTGAGGAT+AGG | + | chr6_2:16106424-16106443 | Msa0910960:intron | 40.0% | |
| GGAATCGTTTACCTAGTATC+TGG | + | chr6_2:16106445-16106464 | Msa0910960:CDS | 40.0% | |
| TACCTAGTATCTGGATTTGG+TGG | + | chr6_2:16106454-16106473 | Msa0910960:CDS | 40.0% | |
| ! | ACCTAGTATCTGGATTTGGT+GGG | + | chr6_2:16106455-16106474 | Msa0910960:CDS | 40.0% |
| ! | AAGAAGTCCAAAAAGAGCAC+CGG | - | chr6_2:16106530-16106549 | None:intergenic | 40.0% |
| TGTGATAAGTTCGGAAAGCA+TGG | - | chr6_2:16106557-16106576 | None:intergenic | 40.0% | |
| CAGAGAGCGATAATTAGACA+TGG | - | chr6_2:16106634-16106653 | None:intergenic | 40.0% | |
| ! | CATCAGATACTCGTATCGAT+TGG | - | chr6_2:16106751-16106770 | None:intergenic | 40.0% |
| TGAGCAAAATTGTCGACATG+TGG | - | chr6_2:16107263-16107282 | None:intergenic | 40.0% | |
| TTCCTAACAGGATTTCTCCT+TGG | + | chr6_2:16107293-16107312 | Msa0910960:CDS | 40.0% | |
| AACCAAGGAGAAATCCTGTT+AGG | - | chr6_2:16107298-16107317 | None:intergenic | 40.0% | |
| TAACCAACCAAATTGAGGAC+GGG | - | chr6_2:16107333-16107352 | None:intergenic | 40.0% | |
| CTAACCAACCAAATTGAGGA+CGG | - | chr6_2:16107334-16107353 | None:intergenic | 40.0% | |
| TGTGCTAACCAACCAAATTG+AGG | - | chr6_2:16107338-16107357 | None:intergenic | 40.0% | |
| ATTCGAGAAAGGAACTTACC+AGG | - | chr6_2:16107450-16107469 | None:intergenic | 40.0% | |
| TGCTAATGAGGATTCGAGAA+AGG | - | chr6_2:16107461-16107480 | None:intergenic | 40.0% | |
| !! | AGCCTTGTTCAGTAAAGTAG+AGG | + | chr6_2:16107499-16107518 | Msa0910960:intron | 40.0% |
| ! | GCCTTGTTCAGTAAAGTAGA+GGG | + | chr6_2:16107500-16107519 | Msa0910960:intron | 40.0% |
| TCCCTCTACTTTACTGAACA+AGG | - | chr6_2:16107504-16107523 | None:intergenic | 40.0% | |
| TTGTTCAGTAAAGTAGAGGG+AGG | + | chr6_2:16107503-16107522 | Msa0910960:intron | 40.0% | |
| TGTTCAGTAAAGTAGAGGGA+GGG | + | chr6_2:16107504-16107523 | Msa0910960:intron | 40.0% | |
| TAGTCCTAAACAAGGGTTAC+TGG | - | chr6_2:16107543-16107562 | None:intergenic | 40.0% | |
| !! | TGTATAAAAGTTCGGTGCAC+CGG | + | chr6_2:16107659-16107678 | Msa0910960:intron | 40.0% |
| !! | TTAGTCTTTTCAGTGCGGTT+TGG | + | chr6_2:16107917-16107936 | Msa0910960:intron | 40.0% |
| !! | TTCAGTGCGGTTTGGTTTAA+CGG | + | chr6_2:16107925-16107944 | Msa0910960:intron | 40.0% |
| TGGTTTAGTGATGCTATTGC+GGG | + | chr6_2:16108258-16108277 | Msa0910960:CDS | 40.0% | |
| TAGAAGTTGGAACACATGTC+AGG | - | chr6_2:16108321-16108340 | None:intergenic | 40.0% | |
| GCGATGACAGTTAAACGAAT+AGG | + | chr6_2:16108350-16108369 | Msa0910960:exon | 40.0% | |
| TAAAAGAACAGGAATAGCGC+AGG | - | chr6_2:16108376-16108395 | None:intergenic | 40.0% | |
| AGAGATCTAGAGAGAGATGG+AGG | + | chr6_2:16104054-16104073 | Msa0910960:CDS | 45.0% | |
| GAGATCTAGAGAGAGATGGA+GGG | + | chr6_2:16104055-16104074 | Msa0910960:CDS | 45.0% | |
| TCAGAAGAAGGACCAAGCAA+AGG | - | chr6_2:16104309-16104328 | None:intergenic | 45.0% | |
| !! | GGTCCTTCTTCTGAAACGTA+AGG | + | chr6_2:16104315-16104334 | Msa0910960:intron | 45.0% |
| TATTGCTTTCAGGCCCTGTT+TGG | + | chr6_2:16104592-16104611 | Msa0910960:intron | 45.0% | |
| ! | GCTGGTTTCGTAAGCTATCA+TGG | + | chr6_2:16104707-16104726 | Msa0910960:intron | 45.0% |
| ! | TGGTTTCCAACTAGCCTGTA+TGG | - | chr6_2:16104848-16104867 | None:intergenic | 45.0% |
| GTTGGAAACCATCATAGCTG+CGG | + | chr6_2:16104857-16104876 | Msa0910960:intron | 45.0% | |
| GATCACAAGCCAATACCACT+AGG | - | chr6_2:16104949-16104968 | None:intergenic | 45.0% | |
| !! | AGTGGTATTGGCTTGTGATC+TGG | + | chr6_2:16104949-16104968 | Msa0910960:intron | 45.0% |
| !! | GTGGTATTGGCTTGTGATCT+GGG | + | chr6_2:16104950-16104969 | Msa0910960:intron | 45.0% |
| CTATAATTGCAATCGCGCTC+TGG | + | chr6_2:16105098-16105117 | Msa0910960:intron | 45.0% | |
| ATATGTAGTGGCCAAGATCG+CGG | + | chr6_2:16105585-16105604 | Msa0910960:intron | 45.0% | |
| CACAACAGCATCCCACTTAA+GGG | - | chr6_2:16105923-16105942 | None:intergenic | 45.0% | |
| TCACAACAGCATCCCACTTA+AGG | - | chr6_2:16105924-16105943 | None:intergenic | 45.0% | |
| GCTGTTGTGAATCATCACCA+AGG | + | chr6_2:16105934-16105953 | Msa0910960:CDS | 45.0% | |
| ATGAGACAAGTCTCCATCCT+TGG | - | chr6_2:16105954-16105973 | None:intergenic | 45.0% | |
| GGAGACTTGTCTCATGCATT+TGG | + | chr6_2:16105959-16105978 | Msa0910960:CDS | 45.0% | |
| TCATGCATTTGGTTACACGC+TGG | + | chr6_2:16105970-16105989 | Msa0910960:CDS | 45.0% | |
| CCGTAATTGACGACACTGAA+AGG | - | chr6_2:16106109-16106128 | None:intergenic | 45.0% | |
| CAGTGTCGTCAATTACGGAT+CGG | + | chr6_2:16106111-16106130 | Msa0910960:intron | 45.0% | |
| ATAGCGAGGCTATAGTGAAG+CGG | - | chr6_2:16106250-16106269 | None:intergenic | 45.0% | |
| ACCAGTGTTGTCAAATAGCG+AGG | - | chr6_2:16106264-16106283 | None:intergenic | 45.0% | |
| TCCCACCAAATCCAGATACT+AGG | - | chr6_2:16106459-16106478 | None:intergenic | 45.0% | |
| ! | GGTGCTCTTTTTGGACTTCT+TGG | + | chr6_2:16106529-16106548 | Msa0910960:CDS | 45.0% |
| CATATTGGGGGATTCCTAAC+AGG | + | chr6_2:16107281-16107300 | Msa0910960:CDS | 45.0% | |
| GGGGAAGGAAAATGAAACCA+AGG | - | chr6_2:16107313-16107332 | None:intergenic | 45.0% | |
| AACCAACCAAATTGAGGACG+GGG | - | chr6_2:16107332-16107351 | None:intergenic | 45.0% | |
| TCGCCTCAAGTCTAAGTACA+AGG | + | chr6_2:16107379-16107398 | Msa0910960:CDS | 45.0% | |
| ! | CTCTCGTACTATTGATTGCC+TGG | + | chr6_2:16107429-16107448 | Msa0910960:CDS | 45.0% |
| TAGGTTCGGAAACACAGAAC+CGG | - | chr6_2:16107681-16107700 | None:intergenic | 45.0% | |
| TGGGACGGTTCAGTTCAAAA+AGG | - | chr6_2:16107737-16107756 | None:intergenic | 45.0% | |
| ACTCGCGTTATAACACGAGT+TGG | - | chr6_2:16107973-16107992 | None:intergenic | 45.0% | |
| GGTTTAGTGATGCTATTGCG+GGG | + | chr6_2:16108259-16108278 | Msa0910960:CDS | 45.0% | |
| ATGTCAGGTAGTGACACCAA+TGG | - | chr6_2:16108306-16108325 | None:intergenic | 45.0% | |
| ACGACAAGATCAGCAGGTAG+TGG | - | chr6_2:16103841-16103860 | None:intergenic | 50.0% | |
| !! | GAAGTGGGTTTGGTGAGAGA+GGG | - | chr6_2:16103923-16103942 | None:intergenic | 50.0% |
| ! | GAGAAGATGGGAAGTGGGTT+TGG | - | chr6_2:16103933-16103952 | None:intergenic | 50.0% |
| GGGAGAGATCTAGAGAGAGA+TGG | + | chr6_2:16104051-16104070 | Msa0910960:CDS | 50.0% | |
| GCTGTTCCACCAACTTCAAG+TGG | + | chr6_2:16104105-16104124 | Msa0910960:CDS | 50.0% | |
| TAATCAGGCCGCAGCTATGA+TGG | - | chr6_2:16104868-16104887 | None:intergenic | 50.0% | |
| TGTAGCTAACCCACTTGGGT+TGG | + | chr6_2:16104923-16104942 | Msa0910960:intron | 50.0% | |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr6_2:16104937-16104956 | Msa0910960:intron | 50.0% |
| GAATCGAACCTGAGACCTCA+AGG | - | chr6_2:16104987-16105006 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | + | chr6_2:16104991-16105010 | Msa0910960:intron | 50.0% | |
| ! | ATTCTCTCCGGTGCCAGTTT+AGG | + | chr6_2:16105003-16105022 | Msa0910960:intron | 50.0% |
| ! | TTATCCGGTGCCAGTTTAGG+TGG | + | chr6_2:16105035-16105054 | Msa0910960:intron | 50.0% |
| ! | TATCCGGTGCCAGTTTAGGT+GGG | + | chr6_2:16105036-16105055 | Msa0910960:intron | 50.0% |
| CAATTATGTCGTGGCCCAGA+TGG | + | chr6_2:16105139-16105158 | Msa0910960:intron | 50.0% | |
| GGACTGAACCAGGAAAAACC+AGG | - | chr6_2:16105269-16105288 | None:intergenic | 50.0% | |
| TTCCTGGTTCAGTCCTGATC+TGG | + | chr6_2:16105274-16105293 | Msa0910960:intron | 50.0% | |
| AACCAGATCAGGACTGAACC+AGG | - | chr6_2:16105279-16105298 | None:intergenic | 50.0% | |
| GAAGATGGGAGCCCTTAAGT+GGG | + | chr6_2:16105909-16105928 | Msa0910960:CDS | 50.0% | |
| GGCAGCAAACATGATCAGTC+TGG | + | chr6_2:16106005-16106024 | Msa0910960:intron | 50.0% | |
| GCCTCGCTATTTGACAACAC+TGG | + | chr6_2:16106260-16106279 | Msa0910960:intron | 50.0% | |
| TTCCTTCCCCGTCCTCAATT+TGG | + | chr6_2:16107323-16107342 | Msa0910960:CDS | 50.0% | |
| AACCAAATTGAGGACGGGGA+AGG | - | chr6_2:16107328-16107347 | None:intergenic | 50.0% | |
| TTCCCCGTCCTCAATTTGGT+TGG | + | chr6_2:16107327-16107346 | Msa0910960:CDS | 50.0% | |
| ATGCTATTGCGGGGTGAAAG+CGG | + | chr6_2:16108268-16108287 | Msa0910960:CDS | 50.0% | |
| !! | GGAAGTGGGTTTGGTGAGAG+AGG | - | chr6_2:16103924-16103943 | None:intergenic | 55.0% |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr6_2:16104935-16104954 | None:intergenic | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr6_2:16104936-16104955 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTCAAGG+AGG | - | chr6_2:16104984-16105003 | None:intergenic | 55.0% | |
| ! | TCTCCGGTGCCAGTTTAGGT+GGG | + | chr6_2:16105007-16105026 | Msa0910960:intron | 55.0% |
| TAGCCCACCTAAACTGGCAC+CGG | - | chr6_2:16105013-16105032 | None:intergenic | 55.0% | |
| TAGCCCACCTAAACTGGCAC+CGG | - | chr6_2:16105013-16105032 | None:intergenic | 55.0% | |
| TTATGTCGTGGCCCAGATGG+CGG | + | chr6_2:16105142-16105161 | Msa0910960:intron | 55.0% | |
| AACGTTCGCAACCGCCATCT+GGG | - | chr6_2:16105173-16105192 | None:intergenic | 55.0% | |
| AAACGTTCGCAACCGCCATC+TGG | - | chr6_2:16105174-16105193 | None:intergenic | 55.0% | |
| GTGAATTGGATTTGGGGGCC+TGG | + | chr6_2:16105248-16105267 | Msa0910960:intron | 55.0% | |
| !! | TTTGGGGGCCTGGTTTTTCC+TGG | + | chr6_2:16105258-16105277 | Msa0910960:intron | 55.0% |
| AAGGTCAGCAACCGCGATCT+TGG | - | chr6_2:16105599-16105618 | None:intergenic | 55.0% | |
| CGAAGATGGGAGCCCTTAAG+TGG | + | chr6_2:16105908-16105927 | Msa0910960:CDS | 55.0% | |
| ! | AGCATCTCCGTTGGTGCTTC+CGG | + | chr6_2:16106508-16106527 | Msa0910960:CDS | 55.0% |
| !! | AAGAGCACCGGAAGCACCAA+CGG | - | chr6_2:16106518-16106537 | None:intergenic | 55.0% |
| ! | GGTGCTTCCGGTGCTCTTTT+TGG | + | chr6_2:16106520-16106539 | Msa0910960:CDS | 55.0% |
| GGTAGTGACACCAATGGCAG+TGG | - | chr6_2:16108300-16108319 | None:intergenic | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr6_2:16104931-16104950 | Msa0910960:intron | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | + | chr6_2:16104969-16104988 | Msa0910960:intron | 60.0% |
| GTGCTCCTCCTTGAGGTCTC+AGG | + | chr6_2:16104976-16104995 | Msa0910960:intron | 60.0% | |
| ! | CTCTCCGGTGCCAGTTTAGG+TGG | + | chr6_2:16105006-16105025 | Msa0910960:intron | 60.0% |
| GCACAGCGACATGTTCCTGC+TGG | + | chr6_2:16107353-16107372 | Msa0910960:CDS | 60.0% | |
| GACTTGAGGCGAACACCAGC+AGG | - | chr6_2:16107371-16107390 | None:intergenic | 60.0% | |
| GCGGATACGACCACTGCCAT+TGG | + | chr6_2:16108287-16108306 | Msa0910960:CDS | 60.0% | |
| TCTGGGCGCAACCGCCATCT+GGG | - | chr6_2:16105156-16105175 | None:intergenic | 65.0% | |
| ATCTGGGCGCAACCGCCATC+TGG | - | chr6_2:16105157-16105176 | None:intergenic | 65.0% | |
| ! | AGATGGCGGTTGCGCCCAGA+TGG | + | chr6_2:16105156-16105175 | Msa0910960:intron | 65.0% |
| TGGCGGTTGCGCCCAGATGG+CGG | + | chr6_2:16105159-16105178 | Msa0910960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 16103791 | 16108580 | 16103791 | ID=Msa0910960;Name=Msa0910960 |
| chr6_2 | mRNA | 16103791 | 16108580 | 16103791 | ID=Msa0910960-mRNA-1;Parent=Msa0910960;Name=Msa0910960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=254|0.75|0.8|1|1|1|5|217|311 |
| chr6_2 | exon | 16103791 | 16104331 | 16103791 | ID=Msa0910960-mRNA-1:exon:3566;Parent=Msa0910960-mRNA-1 |
| chr6_2 | exon | 16105903 | 16106021 | 16105903 | ID=Msa0910960-mRNA-1:exon:3567;Parent=Msa0910960-mRNA-1 |
| chr6_2 | exon | 16106437 | 16106600 | 16106437 | ID=Msa0910960-mRNA-1:exon:3568;Parent=Msa0910960-mRNA-1 |
| chr6_2 | exon | 16107200 | 16107450 | 16107200 | ID=Msa0910960-mRNA-1:exon:3569;Parent=Msa0910960-mRNA-1 |
| chr6_2 | exon | 16108249 | 16108580 | 16108249 | ID=Msa0910960-mRNA-1:exon:3570;Parent=Msa0910960-mRNA-1 |
| chr6_2 | five_prime_UTR | 16103791 | 16104044 | 16103791 | ID=Msa0910960-mRNA-1:five_prime_utr;Parent=Msa0910960-mRNA-1 |
| chr6_2 | CDS | 16104045 | 16104331 | 16104045 | ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1 |
| chr6_2 | CDS | 16105903 | 16106021 | 16105903 | ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1 |
| chr6_2 | CDS | 16106437 | 16106600 | 16106437 | ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1 |
| chr6_2 | CDS | 16107200 | 16107450 | 16107200 | ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1 |
| chr6_2 | CDS | 16108249 | 16108363 | 16108249 | ID=Msa0910960-mRNA-1:cds;Parent=Msa0910960-mRNA-1 |
| chr6_2 | three_prime_UTR | 16108364 | 16108580 | 16108364 | ID=Msa0910960-mRNA-1:three_prime_utr;Parent=Msa0910960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
