AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1392980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392980 MtrunA17_Chr1g0182571 86.261 444 14 3 1 397 38 481 0.0 754
Msa1392980 MtrunA17_Chr7g0262921 52.506 419 96 12 1 360 38 412 5.21e-122 360
Msa1392980 MtrunA17_Chr8g0366741 48.000 50 26 0 1 50 44 93 3.74e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392980 AT2G37550.2 50.110 455 133 9 1 397 38 456 1.24e-123 365
Msa1392980 AT2G37550.1 50.110 455 133 9 1 397 38 456 1.24e-123 365
Msa1392980 AT3G53710.1 50.652 460 126 14 1 397 38 459 5.33e-119 353
Msa1392980 AT3G53710.3 50.652 460 126 14 1 397 38 459 5.33e-119 353
Msa1392980 AT3G53710.2 50.652 460 126 14 1 397 38 459 5.33e-119 353
Msa1392980 AT2G35210.1 52.000 50 24 0 1 50 44 93 3.24e-12 68.2
Msa1392980 AT2G35210.2 52.000 50 24 0 1 50 44 93 4.24e-12 67.4

Find 155 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGAAGAATTAAGATT+TGG 0.281660 tig0021591:+18389 None:intergenic
CTTCTTAATTTAACTTTGTA+TGG 0.293258 tig0021591:-18301 Msa1392980:three_prime_UTR
TGGGATAGGGAAGGAGGTTC+GGG 0.309762 tig0021591:-21361 Msa1392980:CDS
AAGAAAGCTGCTGGACATAA+TGG 0.311171 tig0021591:-19369 Msa1392980:CDS
CACAAAAGAGATTACTTCTA+AGG 0.329121 tig0021591:-20794 Msa1392980:intron
CTCAAACTCTTGGGACGATT+GGG 0.331416 tig0021591:-19625 Msa1392980:CDS
TATTTATACGCGGTCGCAAT+TGG 0.334644 tig0021591:-21254 Msa1392980:CDS
TTGGGATAGGGAAGGAGGTT+CGG 0.345457 tig0021591:-21362 Msa1392980:CDS
ATCCCAGCTCTTGGGATGAT+TGG 0.345579 tig0021591:-19521 Msa1392980:CDS
ATGATGCTGGTTGGGCTGGC+TGG 0.346920 tig0021591:-19443 Msa1392980:CDS
CAAATTCGACTACTAATAAC+TGG 0.372531 tig0021591:-19764 Msa1392980:CDS
CCGGTTGTGAAGGAGAATTT+AGG 0.374910 tig0021591:-21445 Msa1392980:CDS
GGAGTTGATCCTTTATTAGT+AGG 0.375169 tig0021591:+19576 None:intergenic
ATGATTCCGGCTGGGATGAT+TGG 0.384077 tig0021591:-21381 Msa1392980:CDS
TATTCATCTGGTGGGCAGTC+TGG 0.394756 tig0021591:-19552 Msa1392980:CDS
CTTCCTTCCTAGAATCTTTG+TGG 0.398078 tig0021591:+19496 None:intergenic
AAGGGAGAACCTACTAATAA+AGG 0.401153 tig0021591:-19585 Msa1392980:CDS
GACTGCCCACCAGATGAATA+AGG 0.405430 tig0021591:+19555 None:intergenic
GCTCTGAAGAATTAAGATTT+GGG 0.409035 tig0021591:+18390 None:intergenic
TGATAGAAATGGCTACTATC+AGG 0.410799 tig0021591:-19727 Msa1392980:CDS
GCTCAAACTCTTGGGACGAT+TGG 0.416102 tig0021591:-19626 Msa1392980:CDS
ATTGGGACCACAAAGATTCT+AGG 0.416709 tig0021591:-19503 Msa1392980:CDS
CCACAATAATGATGCTGGTT+GGG 0.420450 tig0021591:-19451 Msa1392980:CDS
TCCCAGCTCTTGGGATGATT+GGG 0.422693 tig0021591:-19520 Msa1392980:CDS
CGCCGATGGGGCAGAGTCGC+CGG 0.424686 tig0021591:-21408 Msa1392980:CDS
CGAAATGAGAATGATAGAAA+TGG 0.430727 tig0021591:-19738 Msa1392980:CDS
AAACTCAAAGCTCAAACTCT+TGG 0.431090 tig0021591:-19635 Msa1392980:CDS
AATAATGATGCTGGTTGGGC+TGG 0.431540 tig0021591:-19447 Msa1392980:CDS
TCGGTCGTGGCGTGATCCTC+CGG 0.431712 tig0021591:-21464 Msa1392980:CDS
TTCCTTCGGAATAGAATACT+TGG 0.434318 tig0021591:+21560 None:intergenic
TGATTCCGGCTGGGATGATT+GGG 0.435890 tig0021591:-21380 Msa1392980:CDS
TACTATCAGGATTTCAATCA+AGG 0.437121 tig0021591:-19714 Msa1392980:CDS
TACTCACAATCCCAGCTCTT+GGG 0.438114 tig0021591:-19529 Msa1392980:CDS
GGATCAACTCCTTATTCATC+TGG 0.439382 tig0021591:-19564 Msa1392980:CDS
GGAAGAGAACAATCTTCATC+AGG 0.440220 tig0021591:-19666 Msa1392980:CDS
AAATCAGATGACGCTTGGAC+AGG 0.441545 tig0021591:-19345 Msa1392980:CDS
GGGGATTGGTAAGTTGTCAT+TGG 0.442974 tig0021591:-20851 Msa1392980:CDS
ATTTACAAGTGTTGAAAGAA+AGG 0.443584 tig0021591:-18421 Msa1392980:three_prime_UTR
AGAAAGCTGCTGGACATAAT+GGG 0.444118 tig0021591:-19368 Msa1392980:CDS
TGCGACGGTGGAAGTCCTTC+CGG 0.444137 tig0021591:+21170 None:intergenic
CCTAAATTCTCCTTCACAAC+CGG 0.446662 tig0021591:+21445 None:intergenic
TCCGGAAAACACCGTGGTCT+CGG 0.447372 tig0021591:-21687 Msa1392980:CDS
AACTCAAAGCTCAAACTCTT+GGG 0.448408 tig0021591:-19634 Msa1392980:CDS
TGGGGAGCTGATGCTTTAGC+TGG 0.452701 tig0021591:+19471 None:intergenic
CATGGCTTTGGCTTCACAGA+AGG 0.454790 tig0021591:-19811 Msa1392980:CDS
AAGGAGAATTTAGGTTCAAA+GGG 0.460070 tig0021591:-21436 Msa1392980:CDS
AAAGGAGGTAATTCTTCTAC+TGG 0.461732 tig0021591:-19687 Msa1392980:CDS
CGGATTCAGGCTTTGTCGGA+AGG 0.463866 tig0021591:-21487 Msa1392980:intron
GTCCCAATCATCCCAAGAGC+TGG 0.464845 tig0021591:+19518 None:intergenic
TGATCGGATTCAGGCTTTGT+CGG 0.466457 tig0021591:-21491 Msa1392980:intron
GTAACAATATCCGTTTCCTT+CGG 0.466590 tig0021591:+21546 None:intergenic
TTCAAAGGGAAGGCCGCCGA+TGG 0.468886 tig0021591:-21422 Msa1392980:CDS
AATCAGATGACGCTTGGACA+GGG 0.470359 tig0021591:-19344 Msa1392980:CDS
CAGTCTCGAGATTGTTCCAT+TGG 0.470757 tig0021591:-18683 Msa1392980:three_prime_UTR
TGATGCTGGTTGGGCTGGCT+GGG 0.473809 tig0021591:-19442 Msa1392980:CDS
GTACTCACAATCCCAGCTCT+TGG 0.474135 tig0021591:-19530 Msa1392980:CDS
GAAGGAGAATTTAGGTTCAA+AGG 0.482185 tig0021591:-21437 Msa1392980:CDS
AGCTTCTGCGGCGGGTAAAG+AGG 0.482654 tig0021591:-21230 Msa1392980:CDS
CAGAGATTGGTCAAAGGACA+TGG 0.483037 tig0021591:-19851 Msa1392980:CDS
CCCAACCAGCATCATTATTG+TGG 0.485486 tig0021591:+19451 None:intergenic
TTTGAACGGCGGTGGTGCAC+CGG 0.486910 tig0021591:-21299 Msa1392980:CDS
ATTTAATTATCACAGGGGAT+TGG 0.494169 tig0021591:-20865 Msa1392980:intron
AGTCGCCGGAGTAATGATTC+CGG 0.494324 tig0021591:-21394 Msa1392980:CDS
AAGGACATGGGGTTTAATGA+AGG 0.494662 tig0021591:-19838 Msa1392980:CDS
TCATCTAATAAGAAAGCTGC+TGG 0.498028 tig0021591:-19378 Msa1392980:CDS
TCAAAGGGAAGGCCGCCGAT+GGG 0.498527 tig0021591:-21421 Msa1392980:CDS
CAGTCCTTTCACATGCATAG+TGG 0.500156 tig0021591:+18597 None:intergenic
GATAGGGAAGGAGGTTCGGG+TGG 0.503166 tig0021591:-21358 Msa1392980:CDS
GCCGGAGTAATGATTCCGGC+TGG 0.503400 tig0021591:-21390 Msa1392980:CDS
GCTGCTAATGCTGTTCAGAC+TGG 0.505364 tig0021591:-20817 Msa1392980:CDS
GGAAGGCGGTTATGATCAAA+AGG 0.509923 tig0021591:-19910 Msa1392980:CDS
CCCACAATAATGATGCTGGT+TGG 0.515926 tig0021591:-19452 Msa1392980:CDS
TTTGGCTTCACAGAAGGTTG+AGG 0.518131 tig0021591:-19805 Msa1392980:CDS
CAATTGGAAGCTTCTGCGGC+GGG 0.519075 tig0021591:-21238 Msa1392980:CDS
CTTTGTCGGAAGGTCGGTCG+TGG 0.519720 tig0021591:-21477 Msa1392980:CDS
CCAACCAGCATCATTATTGT+GGG 0.519854 tig0021591:+19452 None:intergenic
ACTCAAAAGACATCAGAGAT+TGG 0.520352 tig0021591:-19864 Msa1392980:CDS
ATGGGAAATCAGATGACGCT+TGG 0.522747 tig0021591:-19350 Msa1392980:CDS
GATCCGTCACCATGGATGCT+TGG 0.527744 tig0021591:-21644 Msa1392980:CDS
GATTTCGGACCAAGCATCCA+TGG 0.529426 tig0021591:+21635 None:intergenic
CCGGCTGGGATGATTGGGAT+AGG 0.534746 tig0021591:-21375 Msa1392980:CDS
GAACTGCTTATTCAACATCA+AGG 0.544748 tig0021591:+18270 None:intergenic
TTCAGGCTTTGTCGGAAGGT+CGG 0.544881 tig0021591:-21483 Msa1392980:intron
CTCCGGCGACTCTGCCCCAT+CGG 0.545912 tig0021591:+21406 None:intergenic
TTTAGGAATTTGAACGGCGG+TGG 0.547735 tig0021591:-21307 Msa1392980:CDS
GCTCCCCACAATAATGATGC+TGG 0.549107 tig0021591:-19456 Msa1392980:CDS
GTATTCTATTCCGAAGGAAA+CGG 0.550054 tig0021591:-21556 Msa1392980:CDS
CTCGAGACTGGTAATGCGGA+TGG 0.554512 tig0021591:+18696 None:intergenic
GCTTCTGCGGCGGGTAAAGA+GGG 0.555155 tig0021591:-21229 Msa1392980:CDS
CAATGGAACAATCTCGAGAC+TGG 0.558227 tig0021591:+18684 None:intergenic
AAACAATTCTTCCTGCACAT+AGG 0.561143 tig0021591:+18529 None:intergenic
CTTTCGGACTGATGACATGC+AGG 0.562108 tig0021591:-18642 Msa1392980:three_prime_UTR
GCGTGATCCTCCGGTTGTGA+AGG 0.563730 tig0021591:-21455 Msa1392980:CDS
TCCGTCGACCTCGATCTCGC+CGG 0.565057 tig0021591:+21280 None:intergenic
ATCAGATGACGCTTGGACAG+GGG 0.565298 tig0021591:-19343 Msa1392980:CDS
TGCCAAGTATTCTATTCCGA+AGG 0.565535 tig0021591:-21562 Msa1392980:CDS
TCTTTGTTTCAGGTCAAGGA+AGG 0.567944 tig0021591:-19927 Msa1392980:intron
TACTTCCCACCTTGCGACGG+TGG 0.568939 tig0021591:+21158 None:intergenic
GTCGCAATTGGAAGCTTCTG+CGG 0.569797 tig0021591:-21242 Msa1392980:CDS
CAAAGGGAAGGCCGCCGATG+GGG 0.571024 tig0021591:-21420 Msa1392980:CDS
AGAATTTAGGTTCAAAGGGA+AGG 0.577046 tig0021591:-21432 Msa1392980:CDS
TCAACTCCTTATTCATCTGG+TGG 0.577122 tig0021591:-19561 Msa1392980:CDS
CGGCTGGGATGATTGGGATA+GGG 0.577559 tig0021591:-21374 Msa1392980:CDS
TCGGAATAGAATACTTGGCA+AGG 0.577709 tig0021591:+21565 None:intergenic
TCCCAATCATCCCAAGAGCT+GGG 0.579490 tig0021591:+19519 None:intergenic
TTCATGTGCTTAGAATGCTC+CGG 0.579995 tig0021591:-21705 Msa1392980:CDS
GAAGGACTTCCACCGTCGCA+AGG 0.582983 tig0021591:-21167 Msa1392980:intron
TGGGATAATGCAAAAGATGA+TGG 0.583815 tig0021591:-19423 Msa1392980:CDS
GAGTTCCCAAAATGTTACAT+AGG 0.584773 tig0021591:+18467 None:intergenic
CCTATCCCAATCATCCCAGC+CGG 0.584873 tig0021591:+21375 None:intergenic
CCGGAGTAATGATTCCGGCT+GGG 0.585313 tig0021591:-21389 Msa1392980:CDS
TCAGATGACGCTTGGACAGG+GGG 0.587832 tig0021591:-19342 Msa1392980:CDS
GAGGTTCGGGTGGTGATGTG+AGG 0.591884 tig0021591:-21348 Msa1392980:CDS
GATGTGAGGAGTAAGTCGAC+GGG 0.593326 tig0021591:-21334 Msa1392980:CDS
TCAAACTCTTGGGACGATTG+GGG 0.596473 tig0021591:-19624 Msa1392980:CDS
TGGCGGAGAATGAGTCAAGC+CGG 0.597511 tig0021591:-21189 Msa1392980:CDS
AGGACATGGGGTTTAATGAA+GGG 0.599160 tig0021591:-19837 Msa1392980:CDS
GTGGTGCACCGGCGAGATCG+AGG 0.600418 tig0021591:-21288 Msa1392980:CDS
CCCAGCCGGAATCATTACTC+CGG 0.606336 tig0021591:+21389 None:intergenic
GCAATTGGAAGCTTCTGCGG+CGG 0.607693 tig0021591:-21239 Msa1392980:CDS
AAGCATCCATGGTGACGGAT+CGG 0.610332 tig0021591:+21646 None:intergenic
TTGTTTCAGGTCAAGGAAGG+CGG 0.612416 tig0021591:-19924 Msa1392980:intron
TTCAATCAAGGGAACAAAGG+AGG 0.615582 tig0021591:-19702 Msa1392980:CDS
AGAGATTGGTCAAAGGACAT+GGG 0.615964 tig0021591:-19850 Msa1392980:CDS
GGACATGGGGTTTAATGAAG+GGG 0.616409 tig0021591:-19836 Msa1392980:CDS
GATTTCAATCAAGGGAACAA+AGG 0.616794 tig0021591:-19705 Msa1392980:CDS
GGACCAAGCATCCATGGTGA+CGG 0.618778 tig0021591:+21641 None:intergenic
CATGGTGACGGATCGGACGA+AGG 0.619426 tig0021591:+21653 None:intergenic
CGGCGACTCTGCCCCATCGG+CGG 0.622822 tig0021591:+21409 None:intergenic
TGATGTGAGGAGTAAGTCGA+CGG 0.623072 tig0021591:-21335 Msa1392980:CDS
CAATCTCGAGACTGGTAATG+CGG 0.626963 tig0021591:+18692 None:intergenic
CTTCGTCCGATCCGTCACCA+TGG 0.629444 tig0021591:-21652 Msa1392980:CDS
AAAACCACTATGCATGTGAA+AGG 0.630270 tig0021591:-18601 Msa1392980:three_prime_UTR
ACATACTTCCCACCTTGCGA+CGG 0.631937 tig0021591:+21155 None:intergenic
GATGATTGGGATAGGGAAGG+AGG 0.632481 tig0021591:-21367 Msa1392980:CDS
AGACATCAGAGATTGGTCAA+AGG 0.632664 tig0021591:-19857 Msa1392980:CDS
CAACTCCTTATTCATCTGGT+GGG 0.634524 tig0021591:-19560 Msa1392980:CDS
GGACCACAAAGATTCTAGGA+AGG 0.638994 tig0021591:-19499 Msa1392980:CDS
GGAGAATGAGTCAAGCCGGA+AGG 0.644382 tig0021591:-21185 Msa1392980:CDS
ACTATCAGGATTTCAATCAA+GGG 0.645448 tig0021591:-19713 Msa1392980:CDS
GAGATTGGTCAAAGGACATG+GGG 0.646826 tig0021591:-19849 Msa1392980:CDS
GAAGAGAACAATCTTCATCA+GGG 0.647329 tig0021591:-19665 Msa1392980:CDS
GGCGAGATCGAGGTCGACGG+AGG 0.649649 tig0021591:-21278 Msa1392980:CDS
CAACCAGCATCATTATTGTG+GGG 0.653135 tig0021591:+19453 None:intergenic
ACCGGCGAGATCGAGGTCGA+CGG 0.653631 tig0021591:-21281 Msa1392980:CDS
TGGGATGATTGGGATAGGGA+AGG 0.657232 tig0021591:-21370 Msa1392980:CDS
AACTATGAGAGACACAACGA+AGG 0.658598 tig0021591:+18245 None:intergenic
ATGACATGCAGGCAAAGCCA+TGG 0.659819 tig0021591:-18631 Msa1392980:three_prime_UTR
AGATGTGAACACCGAGACCA+CGG 0.664997 tig0021591:+21676 None:intergenic
AAATTCTCCTTCACAACCGG+AGG 0.674563 tig0021591:+21448 None:intergenic
GACATGGGGTTTAATGAAGG+GGG 0.697882 tig0021591:-19835 Msa1392980:CDS
ATGTGAGGAGTAAGTCGACG+GGG 0.706562 tig0021591:-21333 Msa1392980:CDS
GAATGCTCCGGAAAACACCG+TGG 0.731228 tig0021591:-21693 Msa1392980:CDS
TGTGAGGAGTAAGTCGACGG+GGG 0.747661 tig0021591:-21332 Msa1392980:CDS
CGACGGAGGATATTTATACG+CGG 0.767034 tig0021591:-21264 Msa1392980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGTATTTAATTATCAC+AGG - tig0021591:19085-19104 Msa1392980:intron 15.0%
!! TATTGTATTTAATTATCACA+GGG - tig0021591:19086-19105 Msa1392980:intron 15.0%
!! AAAGAGCAAAAAAAAAAATT+AGG + tig0021591:20015-20034 None:intergenic 15.0%
!!! TTATCAGTGTTATAATTTTT+TGG - tig0021591:20895-20914 Msa1392980:intron 15.0%
!!! TATCAGTGTTATAATTTTTT+GGG - tig0021591:20896-20915 Msa1392980:intron 15.0%
!! TTATCTATTAAGGAAATAAA+TGG - tig0021591:21090-21109 Msa1392980:intron 15.0%
!!! TGATATTTTTATTTCAAATG+AGG + tig0021591:21219-21238 None:intergenic 15.0%
!!! CATTTTTTTGATTTGGATTT+CGG + tig0021591:18340-18359 None:intergenic 20.0%
!! ATTGTATTTAATTATCACAG+GGG - tig0021591:19087-19106 Msa1392980:intron 20.0%
!!! TATTTGGATTATTTTGTTCA+TGG - tig0021591:19186-19205 Msa1392980:intron 20.0%
!!! ATTTGGATTATTTTGTTCAT+GGG - tig0021591:19187-19206 Msa1392980:intron 20.0%
!! GAAAATTTGTATTTGTTTCA+CGG - tig0021591:19241-19260 Msa1392980:intron 20.0%
!!! TTCATTTATTTCTTTTTAGC+TGG + tig0021591:19550-19569 None:intergenic 20.0%
!! AGCTAAAAAGAAATAAATGA+AGG - tig0021591:19549-19568 Msa1392980:CDS 20.0%
!! GCTAAAAAGAAATAAATGAA+GGG - tig0021591:19550-19569 Msa1392980:CDS 20.0%
!!! TGTATTGATAATGTATTTGT+GGG - tig0021591:19605-19624 Msa1392980:CDS 20.0%
!! AAAAAAGGAAAGAAACTAAT+TGG + tig0021591:19875-19894 None:intergenic 20.0%
!! TATACCAATTAATGCAAAAA+AGG + tig0021591:19890-19909 None:intergenic 20.0%
!! AAATTAGGCAAAGAAAAAAT+GGG + tig0021591:20000-20019 None:intergenic 20.0%
!! AAAATTAGGCAAAGAAAAAA+TGG + tig0021591:20001-20020 None:intergenic 20.0%
!! CATTTACAAAATGTTAAGTA+GGG + tig0021591:20782-20801 None:intergenic 20.0%
!! TCATTTACAAAATGTTAAGT+AGG + tig0021591:20783-20802 None:intergenic 20.0%
!!! TTTTTTCCTATGTAACATTT+TGG - tig0021591:21484-21503 Msa1392980:intron 20.0%
!!! TTTTTCCTATGTAACATTTT+GGG - tig0021591:21485-21504 Msa1392980:intron 20.0%
!!! CTTCTTAATTTAACTTTGTA+TGG - tig0021591:21656-21675 Msa1392980:CDS 20.0%
! CGAAATCCAAATCAAAAAAA+TGG - tig0021591:18338-18357 Msa1392980:three_prime_UTR 25.0%
!! GAAAAATAATCATTTTGCTG+TGG + tig0021591:18868-18887 None:intergenic 25.0%
!!! TTATTTTTCTGTTGTTTCAC+AGG - tig0021591:18879-18898 Msa1392980:intron 25.0%
! TTGAATGTAATCAAATGTGT+CGG + tig0021591:18979-18998 None:intergenic 25.0%
! TGATTACATTCAATTACTAC+CGG - tig0021591:18986-19005 Msa1392980:intron 25.0%
!!! TTTGGATTATTTTGTTCATG+GGG - tig0021591:19188-19207 Msa1392980:intron 25.0%
! CAACAAATTGAACTAATACA+TGG + tig0021591:19290-19309 None:intergenic 25.0%
!! CTATTTGATAACACTTATCT+CGG + tig0021591:19401-19420 None:intergenic 25.0%
! TGACTGCATTAAAAAGATAA+CGG + tig0021591:19511-19530 None:intergenic 25.0%
!!! GTGTATTGATAATGTATTTG+TGG - tig0021591:19604-19623 Msa1392980:CDS 25.0%
!!! TGATTTTATTTCAATTGCAC+TGG + tig0021591:19834-19853 None:intergenic 25.0%
!!! CTTTCCTTTTTTGCATTAAT+TGG - tig0021591:19883-19902 Msa1392980:CDS 25.0%
!!! TTTTTTTTGCTCTTTGTTTC+AGG - tig0021591:20020-20039 Msa1392980:intron 25.0%
!!! GGATTTGATAACTTTTATGA+AGG - tig0021591:20555-20574 Msa1392980:intron 25.0%
! TTTCCTTAATAGATAACCAA+CGG + tig0021591:21086-21105 None:intergenic 25.0%
!!! AATATCATAATTTTTGGACC+AGG - tig0021591:21232-21251 Msa1392980:CDS 25.0%
!!! AGGAAGAATTGTTTTTTTTG+AGG - tig0021591:21437-21456 Msa1392980:CDS 25.0%
! ACATAGGAAAAAATTACAAG+TGG + tig0021591:21477-21496 None:intergenic 25.0%
!! TAGAACTATATTTTTCCAAC+CGG + tig0021591:21515-21534 None:intergenic 25.0%
!!! ATTTACAAGTGTTGAAAGAA+AGG - tig0021591:21536-21555 Msa1392980:intron 25.0%
!!! CAGCTTCCATTTTTTTGATT+TGG + tig0021591:18347-18366 None:intergenic 30.0%
CAAATCAAAAAAATGGAAGC+TGG - tig0021591:18345-18364 Msa1392980:three_prime_UTR 30.0%
! AAGGAGAATTTAGGTTCAAA+GGG - tig0021591:18521-18540 Msa1392980:three_prime_UTR 30.0%
CATGCTTTATAGTTGATTAG+TGG - tig0021591:19039-19058 Msa1392980:intron 30.0%
ATTTAATTATCACAGGGGAT+TGG - tig0021591:19092-19111 Msa1392980:intron 30.0%
CACAAAAGAGATTACTTCTA+AGG - tig0021591:19163-19182 Msa1392980:intron 30.0%
!! GAGATTACTTCTAAGGTATT+TGG - tig0021591:19170-19189 Msa1392980:intron 30.0%
!! GGGAATTGATAATGTTAACT+TGG - tig0021591:19625-19644 Msa1392980:CDS 30.0%
! TTATGACTTTTAGCATAGTG+TGG - tig0021591:19764-19783 Msa1392980:CDS 30.0%
! TATGACTTTTAGCATAGTGT+GGG - tig0021591:19765-19784 Msa1392980:CDS 30.0%
CAAATTCGACTACTAATAAC+TGG - tig0021591:20193-20212 Msa1392980:intron 30.0%
CGAAATGAGAATGATAGAAA+TGG - tig0021591:20219-20238 Msa1392980:intron 30.0%
TACTATCAGGATTTCAATCA+AGG - tig0021591:20243-20262 Msa1392980:intron 30.0%
ACTATCAGGATTTCAATCAA+GGG - tig0021591:20244-20263 Msa1392980:intron 30.0%
! AGATCATGCAAATCTTTTGT+AGG - tig0021591:20658-20677 Msa1392980:intron 30.0%
!! AGGCTTTCACATTTTATTTC+TGG - tig0021591:20678-20697 Msa1392980:intron 30.0%
GTTAAGTAGGGATAAAGATT+GGG + tig0021591:20770-20789 None:intergenic 30.0%
TGTTAAGTAGGGATAAAGAT+TGG + tig0021591:20771-20790 None:intergenic 30.0%
!!! GTGTTATAATTTTTTGGGAG+TGG - tig0021591:20901-20920 Msa1392980:intron 30.0%
TGGAATTATTTAACACGACA+AGG + tig0021591:20954-20973 None:intergenic 30.0%
TAAATAATTCCAGCTAAGTG+CGG - tig0021591:20962-20981 Msa1392980:intron 30.0%
! CAATTTTATAGGTTAGTGAG+TGG + tig0021591:21059-21078 None:intergenic 30.0%
TTAGATACTTTAACCTGACA+TGG - tig0021591:21114-21133 Msa1392980:intron 30.0%
ACAAAAATTACTGCAGCTTT+CGG - tig0021591:21299-21318 Msa1392980:CDS 30.0%
!! GCTCTGAAGAATTAAGATTT+GGG + tig0021591:21570-21589 None:intergenic 30.0%
!! TGCTCTGAAGAATTAAGATT+TGG + tig0021591:21571-21590 None:intergenic 30.0%
ATCAAAAAAATGGAAGCTGG+TGG - tig0021591:18348-18367 Msa1392980:three_prime_UTR 35.0%
TTCCTTCGGAATAGAATACT+TGG + tig0021591:18400-18419 None:intergenic 35.0%
GTATTCTATTCCGAAGGAAA+CGG - tig0021591:18401-18420 Msa1392980:three_prime_UTR 35.0%
GTAACAATATCCGTTTCCTT+CGG + tig0021591:18414-18433 None:intergenic 35.0%
! GAAGGAGAATTTAGGTTCAA+AGG - tig0021591:18520-18539 Msa1392980:three_prime_UTR 35.0%
! AGAATTTAGGTTCAAAGGGA+AGG - tig0021591:18525-18544 Msa1392980:three_prime_UTR 35.0%
!! GGGGATTTTAGGAATTTGAA+CGG - tig0021591:18644-18663 Msa1392980:three_prime_UTR 35.0%
!! GATTTTAGGAATTTGAACGG+CGG - tig0021591:18647-18666 Msa1392980:three_prime_UTR 35.0%
!!! ATTTTTTGCGAAGAAGATGG+CGG - tig0021591:18751-18770 Msa1392980:intron 35.0%
ACATGGTAGAAATATCCCTA+AGG + tig0021591:19273-19292 None:intergenic 35.0%
!!! TAGCTGTTTTTCGAATTCCA+CGG + tig0021591:19357-19376 None:intergenic 35.0%
TGATGTGTGATTGACAATAC+TGG - tig0021591:19481-19500 Msa1392980:CDS 35.0%
TCAGAACAGTGGATGTTAAT+TGG - tig0021591:19721-19740 Msa1392980:CDS 35.0%
ACAGTGGATGTTAATTGGAT+CGG - tig0021591:19726-19745 Msa1392980:CDS 35.0%
! ATGACTTTTAGCATAGTGTG+GGG - tig0021591:19766-19785 Msa1392980:CDS 35.0%
!! TGCTAACTGTTTGCTTTTCA+CGG - tig0021591:19961-19980 Msa1392980:intron 35.0%
ACTCAAAAGACATCAGAGAT+TGG - tig0021591:20093-20112 Msa1392980:intron 35.0%
TGATAGAAATGGCTACTATC+AGG - tig0021591:20230-20249 Msa1392980:intron 35.0%
GATTTCAATCAAGGGAACAA+AGG - tig0021591:20252-20271 Msa1392980:intron 35.0%
AAAGGAGGTAATTCTTCTAC+TGG - tig0021591:20270-20289 Msa1392980:intron 35.0%
GAAGAGAACAATCTTCATCA+GGG - tig0021591:20292-20311 Msa1392980:intron 35.0%
AAACTCAAAGCTCAAACTCT+TGG - tig0021591:20322-20341 Msa1392980:intron 35.0%
AACTCAAAGCTCAAACTCTT+GGG - tig0021591:20323-20342 Msa1392980:intron 35.0%
AAGGGAGAACCTACTAATAA+AGG - tig0021591:20372-20391 Msa1392980:intron 35.0%
! GGAGTTGATCCTTTATTAGT+AGG + tig0021591:20384-20403 None:intergenic 35.0%
TGGGATAATGCAAAAGATGA+TGG - tig0021591:20534-20553 Msa1392980:intron 35.0%
TCATCTAATAAGAAAGCTGC+TGG - tig0021591:20579-20598 Msa1392980:intron 35.0%
CCTCTCATATACACAGTTAT+AGG + tig0021591:20710-20729 None:intergenic 35.0%
CCTATAACTGTGTATATGAG+AGG - tig0021591:20707-20726 Msa1392980:intron 35.0%
ATATTAAAGGGAGAGATGAG+AGG + tig0021591:20929-20948 None:intergenic 35.0%
CACGACAAGGTCATATTAAA+GGG + tig0021591:20941-20960 None:intergenic 35.0%
ACACGACAAGGTCATATTAA+AGG + tig0021591:20942-20961 None:intergenic 35.0%
! TGACCGTTGGTTATCTATTA+AGG - tig0021591:21080-21099 Msa1392980:intron 35.0%
! GCAGTAATTTTTGTCACCAA+TGG + tig0021591:21293-21312 None:intergenic 35.0%
!! TCACATGCATAGTGGTTTTA+GGG + tig0021591:21355-21374 None:intergenic 35.0%
! TTCACATGCATAGTGGTTTT+AGG + tig0021591:21356-21375 None:intergenic 35.0%
AAAACCACTATGCATGTGAA+AGG - tig0021591:21356-21375 Msa1392980:CDS 35.0%
AAACTCAAAAACCTATGTGC+AGG - tig0021591:21417-21436 Msa1392980:CDS 35.0%
AAACAATTCTTCCTGCACAT+AGG + tig0021591:21431-21450 None:intergenic 35.0%
GAGTTCCCAAAATGTTACAT+AGG + tig0021591:21493-21512 None:intergenic 35.0%
!! ATGTAACATTTTGGGAACTC+CGG - tig0021591:21493-21512 Msa1392980:intron 35.0%
GAACTGCTTATTCAACATCA+AGG + tig0021591:21690-21709 None:intergenic 35.0%
TCGGAATAGAATACTTGGCA+AGG + tig0021591:18395-18414 None:intergenic 40.0%
TGCCAAGTATTCTATTCCGA+AGG - tig0021591:18395-18414 Msa1392980:three_prime_UTR 40.0%
CCTAAATTCTCCTTCACAAC+CGG + tig0021591:18515-18534 None:intergenic 40.0%
TATTTATACGCGGTCGCAAT+TGG - tig0021591:18703-18722 Msa1392980:three_prime_UTR 40.0%
!!! GGGATTTTTTGCGAAGAAGA+TGG - tig0021591:18748-18767 Msa1392980:intron 40.0%
CATGACTCGTCGAAAAACAA+AGG + tig0021591:18924-18943 None:intergenic 40.0%
GCTATCTGATAACACTGTAG+TGG + tig0021591:19326-19345 None:intergenic 40.0%
CTAGTATGCTATAGCACTAC+AGG + tig0021591:19431-19450 None:intergenic 40.0%
TAGAGGAAAGCTGTTGAATG+AGG - tig0021591:19789-19808 Msa1392980:CDS 40.0%
AGCTGTTGAATGAGGTCAAT+AGG - tig0021591:19797-19816 Msa1392980:CDS 40.0%
GCTGTTGAATGAGGTCAATA+GGG - tig0021591:19798-19817 Msa1392980:CDS 40.0%
AGTACCTTCATGATTGTCTC+TGG - tig0021591:19924-19943 Msa1392980:intron 40.0%
!! GCTTTTCACGGTATTTTTGC+TGG - tig0021591:19973-19992 Msa1392980:intron 40.0%
! TTGCTCTTTGTTTCAGGTCA+AGG - tig0021591:20026-20045 Msa1392980:intron 40.0%
! TCTTTGTTTCAGGTCAAGGA+AGG - tig0021591:20030-20049 Msa1392980:intron 40.0%
! AGACATCAGAGATTGGTCAA+AGG - tig0021591:20100-20119 Msa1392980:intron 40.0%
! AGAGATTGGTCAAAGGACAT+GGG - tig0021591:20107-20126 Msa1392980:intron 40.0%
AAGGACATGGGGTTTAATGA+AGG - tig0021591:20119-20138 Msa1392980:intron 40.0%
AGGACATGGGGTTTAATGAA+GGG - tig0021591:20120-20139 Msa1392980:intron 40.0%
TTCAATCAAGGGAACAAAGG+AGG - tig0021591:20255-20274 Msa1392980:intron 40.0%
GGAAGAGAACAATCTTCATC+AGG - tig0021591:20291-20310 Msa1392980:intron 40.0%
ATTGGGGCCAAAAAGATAGT+TGG - tig0021591:20349-20368 Msa1392980:intron 40.0%
GGCCAAAAAGATAGTTGGAA+GGG - tig0021591:20354-20373 Msa1392980:intron 40.0%
! CTCCCTTCCAACTATCTTTT+TGG + tig0021591:20359-20378 None:intergenic 40.0%
GGATCAACTCCTTATTCATC+TGG - tig0021591:20393-20412 Msa1392980:intron 40.0%
TCAACTCCTTATTCATCTGG+TGG - tig0021591:20396-20415 Msa1392980:intron 40.0%
CAACTCCTTATTCATCTGGT+GGG - tig0021591:20397-20416 Msa1392980:intron 40.0%
ATTGGGACCACAAAGATTCT+AGG - tig0021591:20454-20473 Msa1392980:intron 40.0%
CTTCCTTCCTAGAATCTTTG+TGG + tig0021591:20464-20483 None:intergenic 40.0%
CAACCAGCATCATTATTGTG+GGG + tig0021591:20507-20526 None:intergenic 40.0%
CCAACCAGCATCATTATTGT+GGG + tig0021591:20508-20527 None:intergenic 40.0%
! CCACAATAATGATGCTGGTT+GGG - tig0021591:20506-20525 Msa1392980:intron 40.0%
AAGAAAGCTGCTGGACATAA+TGG - tig0021591:20588-20607 Msa1392980:intron 40.0%
AGAAAGCTGCTGGACATAAT+GGG - tig0021591:20589-20608 Msa1392980:intron 40.0%
! TTTTGCCCAATCTCTTCTCT+TGG - tig0021591:20808-20827 Msa1392980:CDS 40.0%
TGAAGTTCAGTGGTCATGTA+GGG + tig0021591:20842-20861 None:intergenic 40.0%
GGATTATTCCTGAAGTTCAG+TGG + tig0021591:20852-20871 None:intergenic 40.0%
CAGGAATAATCCATGCTACT+TGG - tig0021591:20860-20879 Msa1392980:intron 40.0%
! TAATCCATGCTACTTGGAGT+TGG - tig0021591:20866-20885 Msa1392980:intron 40.0%
ATTTCCAACTCCAAGTAGCA+TGG + tig0021591:20873-20892 None:intergenic 40.0%
!! AGAATGCTTCTAGCTTTGAG+TGG - tig0021591:20985-21004 Msa1392980:intron 40.0%
TGACATTGCAGACAAGTAGA+AGG - tig0021591:21016-21035 Msa1392980:intron 40.0%
GACATTGCAGACAAGTAGAA+GGG - tig0021591:21017-21036 Msa1392980:intron 40.0%
! CCAACGGTCAGCAATTTTAT+AGG + tig0021591:21070-21089 None:intergenic 40.0%
CCTATAAAATTGCTGACCGT+TGG - tig0021591:21067-21086 Msa1392980:intron 40.0%
!!! CACATGCATAGTGGTTTTAG+GGG + tig0021591:21354-21373 None:intergenic 40.0%
!! AGCAGCGTTGGTGTTATACT+TGG + tig0021591:18436-18455 None:intergenic 45.0%
GCTGCTTCGTTTATCGTGAT+CGG - tig0021591:18450-18469 Msa1392980:three_prime_UTR 45.0%
CGTTTATCGTGATCGGATTC+AGG - tig0021591:18457-18476 Msa1392980:three_prime_UTR 45.0%
! TGATCGGATTCAGGCTTTGT+CGG - tig0021591:18466-18485 Msa1392980:three_prime_UTR 45.0%
AAATTCTCCTTCACAACCGG+AGG + tig0021591:18512-18531 None:intergenic 45.0%
CCGGTTGTGAAGGAGAATTT+AGG - tig0021591:18512-18531 Msa1392980:three_prime_UTR 45.0%
TGATGTGAGGAGTAAGTCGA+CGG - tig0021591:18622-18641 Msa1392980:three_prime_UTR 45.0%
TTTAGGAATTTGAACGGCGG+TGG - tig0021591:18650-18669 Msa1392980:three_prime_UTR 45.0%
CGACGGAGGATATTTATACG+CGG - tig0021591:18693-18712 Msa1392980:three_prime_UTR 45.0%
! GGGGATTGGTAAGTTGTCAT+TGG - tig0021591:19106-19125 Msa1392980:intron 45.0%
TGTTTCACGGAATGCACCTT+AGG - tig0021591:19254-19273 Msa1392980:intron 45.0%
GTTTCACGGAATGCACCTTA+GGG - tig0021591:19255-19274 Msa1392980:intron 45.0%
TCAGATAGCTGATATAGCCG+TGG - tig0021591:19337-19356 Msa1392980:CDS 45.0%
TCTCGGCATATCACAAATCG+TGG + tig0021591:19384-19403 None:intergenic 45.0%
TTTAGCATAGTGTGGGGTAG+AGG - tig0021591:19772-19791 Msa1392980:CDS 45.0%
GATGCCAGAGACAATCATGA+AGG + tig0021591:19931-19950 None:intergenic 45.0%
! TTGTTTCAGGTCAAGGAAGG+CGG - tig0021591:20033-20052 Msa1392980:intron 45.0%
GGAAGGCGGTTATGATCAAA+AGG - tig0021591:20047-20066 Msa1392980:intron 45.0%
! CAGAGATTGGTCAAAGGACA+TGG - tig0021591:20106-20125 Msa1392980:intron 45.0%
! GAGATTGGTCAAAGGACATG+GGG - tig0021591:20108-20127 Msa1392980:intron 45.0%
GGACATGGGGTTTAATGAAG+GGG - tig0021591:20121-20140 Msa1392980:intron 45.0%
GACATGGGGTTTAATGAAGG+GGG - tig0021591:20122-20141 Msa1392980:intron 45.0%
! TTTGGCTTCACAGAAGGTTG+AGG - tig0021591:20152-20171 Msa1392980:intron 45.0%
CTCAAACTCTTGGGACGATT+GGG - tig0021591:20332-20351 Msa1392980:intron 45.0%
TCAAACTCTTGGGACGATTG+GGG - tig0021591:20333-20352 Msa1392980:intron 45.0%
GGGCCAAAAAGATAGTTGGA+AGG - tig0021591:20353-20372 Msa1392980:intron 45.0%
TACTCACAATCCCAGCTCTT+GGG - tig0021591:20428-20447 Msa1392980:intron 45.0%
! GGACCACAAAGATTCTAGGA+AGG - tig0021591:20458-20477 Msa1392980:intron 45.0%
CCCACAATAATGATGCTGGT+TGG - tig0021591:20505-20524 Msa1392980:intron 45.0%
CCCAACCAGCATCATTATTG+TGG + tig0021591:20509-20528 None:intergenic 45.0%
! AATAATGATGCTGGTTGGGC+TGG - tig0021591:20510-20529 Msa1392980:intron 45.0%
ATGGGAAATCAGATGACGCT+TGG - tig0021591:20607-20626 Msa1392980:intron 45.0%
AAATCAGATGACGCTTGGAC+AGG - tig0021591:20612-20631 Msa1392980:intron 45.0%
AATCAGATGACGCTTGGACA+GGG - tig0021591:20613-20632 Msa1392980:intron 45.0%
CGAGACCAAGAGAAGAGATT+GGG + tig0021591:20816-20835 None:intergenic 45.0%
ACGAGACCAAGAGAAGAGAT+TGG + tig0021591:20817-20836 None:intergenic 45.0%
CTGAAGTTCAGTGGTCATGT+AGG + tig0021591:20843-20862 None:intergenic 45.0%
CTACATGACCACTGAACTTC+AGG - tig0021591:20841-20860 Msa1392980:CDS 45.0%
!! TGCTTCTAGCTTTGAGTGGA+AGG - tig0021591:20989-21008 Msa1392980:intron 45.0%
!! TCTAGCTTTGAGTGGAAGGT+AGG - tig0021591:20993-21012 Msa1392980:intron 45.0%
CTGCATCATATGACCATGTC+AGG + tig0021591:21130-21149 None:intergenic 45.0%
TAATGCGGATGGATGAAACC+TGG + tig0021591:21253-21272 None:intergenic 45.0%
! CAATCTCGAGACTGGTAATG+CGG + tig0021591:21268-21287 None:intergenic 45.0%
CAATGGAACAATCTCGAGAC+TGG + tig0021591:21276-21295 None:intergenic 45.0%
CAGTCTCGAGATTGTTCCAT+TGG - tig0021591:21274-21293 Msa1392980:CDS 45.0%
CAGTCCTTTCACATGCATAG+TGG + tig0021591:21363-21382 None:intergenic 45.0%
!! AACATTTTGGGAACTCCGGT+TGG - tig0021591:21497-21516 Msa1392980:intron 45.0%
!!! AATAAAAATATCATAATTTT+TGG - tig0021591:21226-21245 Msa1392980:CDS 5.0%
AGATGTGAACACCGAGACCA+CGG + tig0021591:18284-18303 None:intergenic 50.0%
!! AAGCATCCATGGTGACGGAT+CGG + tig0021591:18314-18333 None:intergenic 50.0%
GATTTCGGACCAAGCATCCA+TGG + tig0021591:18325-18344 None:intergenic 50.0%
CACGATAAACGAAGCAGCGT+TGG + tig0021591:18448-18467 None:intergenic 50.0%
! TTCAGGCTTTGTCGGAAGGT+CGG - tig0021591:18474-18493 Msa1392980:three_prime_UTR 50.0%
AGTCGCCGGAGTAATGATTC+CGG - tig0021591:18563-18582 Msa1392980:three_prime_UTR 50.0%
ATGATTCCGGCTGGGATGAT+TGG - tig0021591:18576-18595 Msa1392980:three_prime_UTR 50.0%
TGATTCCGGCTGGGATGATT+GGG - tig0021591:18577-18596 Msa1392980:three_prime_UTR 50.0%
TGGGATGATTGGGATAGGGA+AGG - tig0021591:18587-18606 Msa1392980:three_prime_UTR 50.0%
GATGATTGGGATAGGGAAGG+AGG - tig0021591:18590-18609 Msa1392980:three_prime_UTR 50.0%
TTGGGATAGGGAAGGAGGTT+CGG - tig0021591:18595-18614 Msa1392980:three_prime_UTR 50.0%
GATGTGAGGAGTAAGTCGAC+GGG - tig0021591:18623-18642 Msa1392980:three_prime_UTR 50.0%
ATGTGAGGAGTAAGTCGACG+GGG - tig0021591:18624-18643 Msa1392980:three_prime_UTR 50.0%
! GTAAGTCGACGGGGGATTTT+AGG - tig0021591:18633-18652 Msa1392980:three_prime_UTR 50.0%
GTCGCAATTGGAAGCTTCTG+CGG - tig0021591:18715-18734 Msa1392980:intron 50.0%
ACATACTTCCCACCTTGCGA+CGG + tig0021591:18805-18824 None:intergenic 50.0%
! TCGCAAGGTGGGAAGTATGT+TGG - tig0021591:18805-18824 Msa1392980:intron 50.0%
! CGCAAGGTGGGAAGTATGTT+GGG - tig0021591:18806-18825 Msa1392980:intron 50.0%
! GGTGGGAAGTATGTTGGGTT+CGG - tig0021591:18811-18830 Msa1392980:intron 50.0%
! TTGCTCCTCTGTGAAGGCAT+CGG + tig0021591:18844-18863 None:intergenic 50.0%
! TGTGGATTGCTCCTCTGTGA+AGG + tig0021591:18850-18869 None:intergenic 50.0%
GCTGCTAATGCTGTTCAGAC+TGG - tig0021591:19140-19159 Msa1392980:intron 50.0%
! ATCCACTGTTCTGAGCAACG+AGG + tig0021591:19715-19734 None:intergenic 50.0%
GGGTTTAATGAAGGGGGTCA+TGG - tig0021591:20128-20147 Msa1392980:intron 50.0%
AATGAAGGGGGTCATGGCTT+TGG - tig0021591:20134-20153 Msa1392980:intron 50.0%
!! CATGGCTTTGGCTTCACAGA+AGG - tig0021591:20146-20165 Msa1392980:intron 50.0%
GCTCAAACTCTTGGGACGAT+TGG - tig0021591:20331-20350 Msa1392980:intron 50.0%
GACTGCCCACCAGATGAATA+AGG + tig0021591:20405-20424 None:intergenic 50.0%
! TATTCATCTGGTGGGCAGTC+TGG - tig0021591:20405-20424 Msa1392980:intron 50.0%
GTACTCACAATCCCAGCTCT+TGG - tig0021591:20427-20446 Msa1392980:intron 50.0%
ATCCCAGCTCTTGGGATGAT+TGG - tig0021591:20436-20455 Msa1392980:intron 50.0%
TCCCAGCTCTTGGGATGATT+GGG - tig0021591:20437-20456 Msa1392980:intron 50.0%
TCCCAATCATCCCAAGAGCT+GGG + tig0021591:20441-20460 None:intergenic 50.0%
GCTCCCCACAATAATGATGC+TGG - tig0021591:20501-20520 Msa1392980:intron 50.0%
ATCAGATGACGCTTGGACAG+GGG - tig0021591:20614-20633 Msa1392980:intron 50.0%
AAGCATTCTCCGCACTTAGC+TGG + tig0021591:20974-20993 None:intergenic 50.0%
CTTTCGGACTGATGACATGC+AGG - tig0021591:21315-21334 Msa1392980:CDS 50.0%
ATGACATGCAGGCAAAGCCA+TGG - tig0021591:21326-21345 Msa1392980:CDS 50.0%
!!! TAGTGGTTTTAGGGGCACCA+TGG + tig0021591:21346-21365 None:intergenic 50.0%
GAATGCTCCGGAAAACACCG+TGG - tig0021591:18264-18283 Msa1392980:three_prime_UTR 55.0%
TCCGGAAAACACCGTGGTCT+CGG - tig0021591:18270-18289 Msa1392980:three_prime_UTR 55.0%
! ACCGAGACCACGGTGTTTTC+CGG + tig0021591:18274-18293 None:intergenic 55.0%
GATCCGTCACCATGGATGCT+TGG - tig0021591:18313-18332 Msa1392980:three_prime_UTR 55.0%
GGACCAAGCATCCATGGTGA+CGG + tig0021591:18319-18338 None:intergenic 55.0%
! CGGATTCAGGCTTTGTCGGA+AGG - tig0021591:18470-18489 Msa1392980:three_prime_UTR 55.0%
CCCAGCCGGAATCATTACTC+CGG + tig0021591:18571-18590 None:intergenic 55.0%
CCGGAGTAATGATTCCGGCT+GGG - tig0021591:18568-18587 Msa1392980:three_prime_UTR 55.0%
CCTATCCCAATCATCCCAGC+CGG + tig0021591:18585-18604 None:intergenic 55.0%
CGGCTGGGATGATTGGGATA+GGG - tig0021591:18583-18602 Msa1392980:three_prime_UTR 55.0%
TGGGATAGGGAAGGAGGTTC+GGG - tig0021591:18596-18615 Msa1392980:three_prime_UTR 55.0%
TGTGAGGAGTAAGTCGACGG+GGG - tig0021591:18625-18644 Msa1392980:three_prime_UTR 55.0%
GCAATTGGAAGCTTCTGCGG+CGG - tig0021591:18718-18737 Msa1392980:intron 55.0%
CAATTGGAAGCTTCTGCGGC+GGG - tig0021591:18719-18738 Msa1392980:intron 55.0%
TGGCGGAGAATGAGTCAAGC+CGG - tig0021591:18768-18787 Msa1392980:intron 55.0%
GGAGAATGAGTCAAGCCGGA+AGG - tig0021591:18772-18791 Msa1392980:intron 55.0%
CTAGTCCGATGCCTTCACAG+AGG - tig0021591:18836-18855 Msa1392980:intron 55.0%
! TACCGGTGTCAGTGTTGTGC+CGG - tig0021591:19003-19022 Msa1392980:intron 55.0%
TGCCTCGTTGCTCAGAACAG+TGG - tig0021591:19710-19729 Msa1392980:CDS 55.0%
GTCCCAATCATCCCAAGAGC+TGG + tig0021591:20442-20461 None:intergenic 55.0%
TGGGGAGCTGATGCTTTAGC+TGG + tig0021591:20489-20508 None:intergenic 55.0%
TCAGATGACGCTTGGACAGG+GGG - tig0021591:20615-20634 Msa1392980:intron 55.0%
ACAGGGGGTGGCTTTCTCTA+AGG - tig0021591:20630-20649 Msa1392980:intron 55.0%
! CTCGAGACTGGTAATGCGGA+TGG + tig0021591:21264-21283 None:intergenic 55.0%
!! CATGGTGACGGATCGGACGA+AGG + tig0021591:18307-18326 None:intergenic 60.0%
CTTCGTCCGATCCGTCACCA+TGG - tig0021591:18305-18324 Msa1392980:three_prime_UTR 60.0%
CTTTGTCGGAAGGTCGGTCG+TGG - tig0021591:18480-18499 Msa1392980:three_prime_UTR 60.0%
GCGTGATCCTCCGGTTGTGA+AGG - tig0021591:18502-18521 Msa1392980:three_prime_UTR 60.0%
TTCAAAGGGAAGGCCGCCGA+TGG - tig0021591:18535-18554 Msa1392980:three_prime_UTR 60.0%
TCAAAGGGAAGGCCGCCGAT+GGG - tig0021591:18536-18555 Msa1392980:three_prime_UTR 60.0%
GCCGGAGTAATGATTCCGGC+TGG - tig0021591:18567-18586 Msa1392980:three_prime_UTR 60.0%
CCGGCTGGGATGATTGGGAT+AGG - tig0021591:18582-18601 Msa1392980:three_prime_UTR 60.0%
GATAGGGAAGGAGGTTCGGG+TGG - tig0021591:18599-18618 Msa1392980:three_prime_UTR 60.0%
! GAGGTTCGGGTGGTGATGTG+AGG - tig0021591:18609-18628 Msa1392980:three_prime_UTR 60.0%
TTTGAACGGCGGTGGTGCAC+CGG - tig0021591:18658-18677 Msa1392980:three_prime_UTR 60.0%
AGCTTCTGCGGCGGGTAAAG+AGG - tig0021591:18727-18746 Msa1392980:intron 60.0%
GCTTCTGCGGCGGGTAAAGA+GGG - tig0021591:18728-18747 Msa1392980:intron 60.0%
TGCGACGGTGGAAGTCCTTC+CGG + tig0021591:18790-18809 None:intergenic 60.0%
GAAGGACTTCCACCGTCGCA+AGG - tig0021591:18790-18809 Msa1392980:intron 60.0%
GACTTCCACCGTCGCAAGGT+GGG - tig0021591:18794-18813 Msa1392980:intron 60.0%
TACTTCCCACCTTGCGACGG+TGG + tig0021591:18802-18821 None:intergenic 60.0%
! ACCGGTGTCAGTGTTGTGCC+GGG - tig0021591:19004-19023 Msa1392980:intron 60.0%
ACCCGGCACAACACTGACAC+CGG + tig0021591:19008-19027 None:intergenic 60.0%
AGCATGCGCACACACACACC+CGG + tig0021591:19025-19044 None:intergenic 60.0%
!! ATGATGCTGGTTGGGCTGGC+TGG - tig0021591:20514-20533 Msa1392980:intron 60.0%
!! TGATGCTGGTTGGGCTGGCT+GGG - tig0021591:20515-20534 Msa1392980:intron 60.0%
TCGGTCGTGGCGTGATCCTC+CGG - tig0021591:18493-18512 Msa1392980:three_prime_UTR 65.0%
CAAAGGGAAGGCCGCCGATG+GGG - tig0021591:18537-18556 Msa1392980:three_prime_UTR 65.0%
ACCGGCGAGATCGAGGTCGA+CGG - tig0021591:18676-18695 Msa1392980:three_prime_UTR 65.0%
TCCGTCGACCTCGATCTCGC+CGG + tig0021591:18680-18699 None:intergenic 65.0%
GGACTTCCACCGTCGCAAGG+TGG - tig0021591:18793-18812 Msa1392980:intron 65.0%
GATGACGCTTGGACAGGGGG+TGG - tig0021591:20618-20637 Msa1392980:intron 65.0%
CTCCGGCGACTCTGCCCCAT+CGG + tig0021591:18554-18573 None:intergenic 70.0%
! GTGGTGCACCGGCGAGATCG+AGG - tig0021591:18669-18688 Msa1392980:three_prime_UTR 70.0%
GGCGAGATCGAGGTCGACGG+AGG - tig0021591:18679-18698 Msa1392980:three_prime_UTR 70.0%
CGGCGACTCTGCCCCATCGG+CGG + tig0021591:18551-18570 None:intergenic 75.0%
CGCCGATGGGGCAGAGTCGC+CGG - tig0021591:18549-18568 Msa1392980:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0021591 gene 18255 21724 18255 ID=Msa1392980;Name=Msa1392980
tig0021591 mRNA 18255 21724 18255 ID=Msa1392980-mRNA-1;Parent=Msa1392980;Name=Msa1392980-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.5|0.6|1|0.75|0.6|5|472|397
tig0021591 exon 18255 18725 18255 ID=Msa1392980-mRNA-1:exon:13590;Parent=Msa1392980-mRNA-1
tig0021591 exon 19328 19937 19328 ID=Msa1392980-mRNA-1:exon:13589;Parent=Msa1392980-mRNA-1
tig0021591 exon 20795 20872 20795 ID=Msa1392980-mRNA-1:exon:13588;Parent=Msa1392980-mRNA-1
tig0021591 exon 21168 21500 21168 ID=Msa1392980-mRNA-1:exon:13587;Parent=Msa1392980-mRNA-1
tig0021591 exon 21551 21724 21551 ID=Msa1392980-mRNA-1:exon:13586;Parent=Msa1392980-mRNA-1
tig0021591 CDS 21551 21724 21551 ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1
tig0021591 CDS 21168 21500 21168 ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1
tig0021591 CDS 20795 20872 20795 ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1
tig0021591 CDS 19329 19937 19329 ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1
tig0021591 three_prime_UTR 19328 19328 19328 ID=Msa1392980-mRNA-1:three_prime_utr;Parent=Msa1392980-mRNA-1
tig0021591 three_prime_UTR 18255 18725 18255 ID=Msa1392980-mRNA-1:three_prime_utr;Parent=Msa1392980-mRNA-1
Gene Sequence

>Msa1392980

ATGTGCTTAGAATGCTCCGGAAAACACCGTGGTCTCGGTGTTCACATCTCCTTCGTCCGATCCGTCACCATGGATGCTTGGTCCGAAATCCAAATCAAAAAAATGGAAGCTGGTGGCAATGACAATCTCAACGCTTTCCTTGCCAAGTATTCTATTCCGAAGGAAACGGATATTGCTTTGTCGGAAGGTCGGTCGTGGCGTGATCCTCCGGTTGTGAAGGAGAATTTAGGTTCAAAGGGAAGGCCGCCGATGGGGCAGAGTCGCCGGAGTAATGATTCCGGCTGGGATGATTGGGATAGGGAAGGAGGTTCGGGTGGTGATGTGAGGAGTAAGTCGACGGGGGATTTTAGGAATTTGAACGGCGGTGGTGCACCGGCGAGATCGAGGTCGACGGAGGATATTTATACGCGGTCGCAATTGGAAGCTTCTGCGGCGGGTAAAGAGGGATTTTTTGCGAAGAAGATGGCGGAGAATGAGTCAAGCCGGAAGGACTTCCACCGTCGCAAGGGGATTGGTAAGTTGTCATTGGTTGCTGCATCTGCTGCTAATGCTGTTCAGACTGGCACAAAAGAGATTACTTCTAAGGTCAAGGAAGGCGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATTGGTCAAAGGACATGGGGTTTAATGAAGGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACGAAAGAAAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAGGATTTCAATCAAGGGAACAAAGGAGGTAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATACAAAACTCAAAGCTCAAACTCTTGGGACGATTGGGGCCAAAAAGATAGTTGGAAGGGAGAACCTACTAATAAAGGATCAACTCCTTATTCATCTGGTGGGCAGTCTGGTACTCACAATCCCAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCAGCTAAAGCATCAGCTCCCCACAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCAAAAGATGATGGATTTGATAACTTTTATGAAGGTTCATCTAATAAGAAAGCTGCTGGACATAATGGGAAATCAGATGACGCTTGGACAGGGGGTGGCTTTCTCTAA

Protein sequence

>Msa1392980

MCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLAKYSIPKETDIALSEGRSWRDPPVVKENLGSKGRPPMGQSRRSNDSGWDDWDREGGSGGDVRSKSTGDFRNLNGGGAPARSRSTEDIYTRSQLEASAAGKEGFFAKKMAENESSRKDFHRRKGIGKLSLVAASAANAVQTGTKEITSKVKEGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNENDRNGYYQDFNQGNKGGNSSTGREQSSSGQYKTQSSNSWDDWGQKDSWKGEPTNKGSTPYSSGGQSGTHNPSSWDDWDHKDSRKEEPAKASAPHNNDAGWAGWDNAKDDGFDNFYEGSSNKKAAGHNGKSDDAWTGGGFL*