Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1392980 | XP_013468351.1 | 86.261 | 444 | 14 | 3 | 1 | 397 | 38 | 481 | 0.0 | 754 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1392980 | sp|O80925|AGD7_ARATH | 50.110 | 455 | 133 | 9 | 1 | 397 | 38 | 456 | 1.22e-122 | 365 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1392980 | A0A072VLX3 | 86.261 | 444 | 14 | 3 | 1 | 397 | 38 | 481 | 0.0 | 754 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000910 | Msa1392980 | 0.816336 | 5.828658e-52 | -8.615850e-47 |
Msa0024400 | Msa1392980 | 0.845251 | 4.564443e-59 | -8.615850e-47 |
Msa0026780 | Msa1392980 | 0.913864 | 3.748364e-84 | -8.615850e-47 |
Msa0072420 | Msa1392980 | 0.851819 | 6.924225e-61 | -8.615850e-47 |
Msa0076290 | Msa1392980 | 0.848128 | 7.464057e-60 | -8.615850e-47 |
Msa0081270 | Msa1392980 | 0.813235 | 2.835806e-51 | -8.615850e-47 |
Msa0091730 | Msa1392980 | 0.921951 | 1.847159e-88 | -8.615850e-47 |
Msa0108760 | Msa1392980 | 0.805579 | 1.247074e-49 | -8.615850e-47 |
Msa0115790 | Msa1392980 | 0.851540 | 8.302940e-61 | -8.615850e-47 |
Msa1345100 | Msa1392980 | 0.800435 | 1.443054e-48 | -8.615850e-47 |
Msa1357560 | Msa1392980 | 0.815617 | 8.435143e-52 | -8.615850e-47 |
Msa1364350 | Msa1392980 | -0.812454 | 4.204958e-51 | -8.615850e-47 |
Msa1368710 | Msa1392980 | 0.836777 | 7.670515e-57 | -8.615850e-47 |
Msa1373160 | Msa1392980 | 0.823239 | 1.541612e-53 | -8.615850e-47 |
Msa1373850 | Msa1392980 | 0.812661 | 3.789655e-51 | -8.615850e-47 |
Msa1392980 | Msa1407760 | 0.816498 | 5.362847e-52 | -8.615850e-47 |
Msa1392980 | Msa1412730 | 0.813587 | 2.374145e-51 | -8.615850e-47 |
Msa1392980 | Msa1414820 | 0.843962 | 1.014579e-58 | -8.615850e-47 |
Msa1392980 | Msa1419690 | 0.834263 | 3.316101e-56 | -8.615850e-47 |
Msa1392980 | Msa1433700 | 0.816073 | 6.674302e-52 | -8.615850e-47 |
Msa1392980 | Msa1437730 | 0.806074 | 9.815343e-50 | -8.615850e-47 |
Msa1392980 | Msa1440200 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
Msa1392980 | Msa1440830 | 0.812896 | 3.365392e-51 | -8.615850e-47 |
Msa1392980 | Msa1452710 | 0.801589 | 8.384894e-49 | -8.615850e-47 |
Msa1392980 | Msa1457620 | 0.843625 | 1.249237e-58 | -8.615850e-47 |
Msa0604290 | Msa1392980 | 0.844796 | 6.055683e-59 | -8.615850e-47 |
Msa0610550 | Msa1392980 | 0.829856 | 4.072564e-55 | -8.615850e-47 |
Msa0622790 | Msa1392980 | 0.825281 | 5.107332e-54 | -8.615850e-47 |
Msa0626920 | Msa1392980 | 0.807094 | 5.979378e-50 | -8.615850e-47 |
Msa0646020 | Msa1392980 | 0.837001 | 6.724544e-57 | -8.615850e-47 |
Msa0646420 | Msa1392980 | 0.847393 | 1.189787e-59 | -8.615850e-47 |
Msa0651560 | Msa1392980 | 0.834102 | 3.639457e-56 | -8.615850e-47 |
Msa0661830 | Msa1392980 | 0.804323 | 2.282468e-49 | -8.615850e-47 |
Msa0662220 | Msa1392980 | 0.849789 | 2.580337e-60 | -8.615850e-47 |
Msa0677530 | Msa1392980 | 0.807973 | 3.891199e-50 | -8.615850e-47 |
Msa0689320 | Msa1392980 | 0.802481 | 5.497757e-49 | -8.615850e-47 |
Msa0690310 | Msa1392980 | 0.806570 | 7.714645e-50 | -8.615850e-47 |
Msa0692980 | Msa1392980 | 0.829660 | 4.546745e-55 | -8.615850e-47 |
Msa0694140 | Msa1392980 | 0.801905 | 7.221324e-49 | -8.615850e-47 |
Msa0703810 | Msa1392980 | 0.811678 | 6.208545e-51 | -8.615850e-47 |
Msa0748480 | Msa1392980 | 0.803794 | 2.940506e-49 | -8.615850e-47 |
Msa0766140 | Msa1392980 | 0.810987 | 8.769521e-51 | -8.615850e-47 |
Msa0776560 | Msa1392980 | 0.824786 | 6.684746e-54 | -8.615850e-47 |
Msa0800480 | Msa1392980 | 0.813934 | 1.990450e-51 | -8.615850e-47 |
Msa0813530 | Msa1392980 | 0.803352 | 3.631475e-49 | -8.615850e-47 |
Msa0828590 | Msa1392980 | 0.841926 | 3.533816e-58 | -8.615850e-47 |
Msa0122530 | Msa1392980 | 0.959927 | 5.533273e-118 | -8.615850e-47 |
Msa0148320 | Msa1392980 | 0.800786 | 1.223804e-48 | -8.615850e-47 |
Msa0163510 | Msa1392980 | 0.866561 | 2.606791e-65 | -8.615850e-47 |
Msa0186540 | Msa1392980 | 0.814793 | 1.285552e-51 | -8.615850e-47 |
Msa0194920 | Msa1392980 | 0.835676 | 1.460660e-56 | -8.615850e-47 |
Msa0204960 | Msa1392980 | 0.846800 | 1.730127e-59 | -8.615850e-47 |
Msa0215990 | Msa1392980 | 0.851547 | 8.268933e-61 | -8.615850e-47 |
Msa0217670 | Msa1392980 | 0.874064 | 9.038859e-68 | -8.615850e-47 |
Msa0226260 | Msa1392980 | 0.809010 | 2.336703e-50 | -8.615850e-47 |
Msa0232790 | Msa1392980 | 0.825539 | 4.436844e-54 | -8.615850e-47 |
Msa0236920 | Msa1392980 | 0.823813 | 1.131450e-53 | -8.615850e-47 |
Msa0237300 | Msa1392980 | 0.834816 | 2.408283e-56 | -8.615850e-47 |
Msa1228040 | Msa1392980 | 0.888065 | 8.216944e-73 | -8.615850e-47 |
Msa1258030 | Msa1392980 | -0.814944 | 1.190092e-51 | -8.615850e-47 |
Msa1265520 | Msa1392980 | -0.819998 | 8.649260e-53 | -8.615850e-47 |
Msa1271130 | Msa1392980 | 0.860698 | 1.723101e-63 | -8.615850e-47 |
Msa1276150 | Msa1392980 | 0.814075 | 1.852846e-51 | -8.615850e-47 |
Msa1305700 | Msa1392980 | 0.803677 | 3.109837e-49 | -8.615850e-47 |
Msa1308220 | Msa1392980 | 0.830172 | 3.410183e-55 | -8.615850e-47 |
Msa1315890 | Msa1392980 | 0.802028 | 6.811662e-49 | -8.615850e-47 |
Msa1327640 | Msa1392980 | 0.814228 | 1.714736e-51 | -8.615850e-47 |
Msa1341060 | Msa1392980 | 0.872062 | 4.243776e-67 | -8.615850e-47 |
Msa1342890 | Msa1392980 | 0.812559 | 3.989444e-51 | -8.615850e-47 |
Msa0374220 | Msa1392980 | 0.820584 | 6.349461e-53 | -8.615850e-47 |
Msa0377820 | Msa1392980 | 0.827993 | 1.150570e-54 | -8.615850e-47 |
Msa0385500 | Msa1392980 | 0.870518 | 1.373887e-66 | -8.615850e-47 |
Msa0385740 | Msa1392980 | 0.822648 | 2.116595e-53 | -8.615850e-47 |
Msa0398670 | Msa1392980 | 0.810269 | 1.253556e-50 | -8.615850e-47 |
Msa0404630 | Msa1392980 | 0.843326 | 1.500975e-58 | -8.615850e-47 |
Msa0417030 | Msa1392980 | 0.801718 | 7.887525e-49 | -8.615850e-47 |
Msa0426580 | Msa1392980 | 0.851331 | 9.513942e-61 | -8.615850e-47 |
Msa0431980 | Msa1392980 | 0.834108 | 3.626260e-56 | -8.615850e-47 |
Msa0439960 | Msa1392980 | 0.828084 | 1.094161e-54 | -8.615850e-47 |
Msa0445750 | Msa1392980 | 0.807953 | 3.929082e-50 | -8.615850e-47 |
Msa0462600 | Msa1392980 | 0.810633 | 1.046053e-50 | -8.615850e-47 |
Msa0466350 | Msa1392980 | 0.826865 | 2.145517e-54 | -8.615850e-47 |
Msa0469890 | Msa1392980 | 0.809848 | 1.544400e-50 | -8.615850e-47 |
Msa0472930 | Msa1392980 | 0.816822 | 4.535798e-52 | -8.615850e-47 |
Msa0985180 | Msa1392980 | 0.814937 | 1.194694e-51 | -8.615850e-47 |
Msa0992510 | Msa1392980 | 0.868129 | 8.214867e-66 | -8.615850e-47 |
Msa1031660 | Msa1392980 | 0.845097 | 5.022546e-59 | -8.615850e-47 |
Msa1035750 | Msa1392980 | 0.804293 | 2.315797e-49 | -8.615850e-47 |
Msa1036300 | Msa1392980 | 0.824973 | 6.036857e-54 | -8.615850e-47 |
Msa1037520 | Msa1392980 | 0.815535 | 8.796729e-52 | -8.615850e-47 |
Msa1047760 | Msa1392980 | 0.833781 | 4.379345e-56 | -8.615850e-47 |
Msa1059300 | Msa1392980 | 0.811293 | 7.527029e-51 | -8.615850e-47 |
Msa1070720 | Msa1392980 | 0.837684 | 4.495926e-57 | -8.615850e-47 |
Msa0243090 | Msa1392980 | 0.801283 | 9.687212e-49 | -8.615850e-47 |
Msa0249860 | Msa1392980 | 0.822972 | 1.779367e-53 | -8.615850e-47 |
Msa0256140 | Msa1392980 | 0.883286 | 5.101646e-71 | -8.615850e-47 |
Msa0257490 | Msa1392980 | 0.858377 | 8.592695e-63 | -8.615850e-47 |
Msa0259680 | Msa1392980 | 0.823252 | 1.531208e-53 | -8.615850e-47 |
Msa0272300 | Msa1392980 | 0.868486 | 6.299396e-66 | -8.615850e-47 |
Msa0274720 | Msa1392980 | 0.839883 | 1.214003e-57 | -8.615850e-47 |
Msa0281530 | Msa1392980 | 0.814701 | 1.347284e-51 | -8.615850e-47 |
Msa0296790 | Msa1392980 | 0.840344 | 9.203185e-58 | -8.615850e-47 |
Msa0304730 | Msa1392980 | 0.825602 | 4.286954e-54 | -8.615850e-47 |
Msa0315520 | Msa1392980 | 0.845239 | 4.596777e-59 | -8.615850e-47 |
Msa0318680 | Msa1392980 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
Msa0336450 | Msa1392980 | 0.834687 | 2.594364e-56 | -8.615850e-47 |
Msa0336540 | Msa1392980 | 0.816995 | 4.148772e-52 | -8.615850e-47 |
Msa0341480 | Msa1392980 | 0.827252 | 1.733924e-54 | -8.615850e-47 |
Msa0343500 | Msa1392980 | 0.828554 | 8.428992e-55 | -8.615850e-47 |
Msa1117240 | Msa1392980 | 0.810168 | 1.317858e-50 | -8.615850e-47 |
Msa1118860 | Msa1392980 | 0.862310 | 5.548760e-64 | -8.615850e-47 |
Msa1128280 | Msa1392980 | 0.810835 | 9.461727e-51 | -8.615850e-47 |
Msa1158640 | Msa1392980 | -0.838186 | 3.339127e-57 | -8.615850e-47 |
Msa1165230 | Msa1392980 | 0.847942 | 8.402406e-60 | -8.615850e-47 |
Msa1175350 | Msa1392980 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
Msa1178580 | Msa1392980 | 0.811573 | 6.544848e-51 | -8.615850e-47 |
Msa1184230 | Msa1392980 | 0.912270 | 2.360452e-83 | -8.615850e-47 |
Msa1213890 | Msa1392980 | 0.814541 | 1.461548e-51 | -8.615850e-47 |
Msa1213980 | Msa1392980 | 0.826116 | 3.237120e-54 | -8.615850e-47 |
Msa1218620 | Msa1392980 | 0.823603 | 1.267334e-53 | -8.615850e-47 |
Msa0485710 | Msa1392980 | 0.800248 | 1.575760e-48 | -8.615850e-47 |
Msa0515340 | Msa1392980 | 0.806563 | 7.743025e-50 | -8.615850e-47 |
Msa0517590 | Msa1392980 | 0.856404 | 3.291322e-62 | -8.615850e-47 |
Msa0520850 | Msa1392980 | 0.848387 | 6.333226e-60 | -8.615850e-47 |
Msa0527540 | Msa1392980 | 0.895714 | 7.367720e-76 | -8.615850e-47 |
Msa0530300 | Msa1392980 | 0.814653 | 1.380569e-51 | -8.615850e-47 |
Msa0530560 | Msa1392980 | 0.809253 | 2.073488e-50 | -8.615850e-47 |
Msa0531530 | Msa1392980 | 0.818905 | 1.535546e-52 | -8.615850e-47 |
Msa0542560 | Msa1392980 | 0.836234 | 1.054450e-56 | -8.615850e-47 |
Msa0547160 | Msa1392980 | 0.802542 | 5.339050e-49 | -8.615850e-47 |
Msa0549450 | Msa1392980 | 0.853266 | 2.677593e-61 | -8.615850e-47 |
Msa0549950 | Msa1392980 | 0.843015 | 1.816333e-58 | -8.615850e-47 |
Msa0578410 | Msa1392980 | 0.832080 | 1.158959e-55 | -8.615850e-47 |
Msa0581010 | Msa1392980 | 0.802015 | 6.856476e-49 | -8.615850e-47 |
Msa0847150 | Msa1392980 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
Msa0891590 | Msa1392980 | 0.844589 | 6.883493e-59 | -8.615850e-47 |
Msa0894400 | Msa1392980 | 0.802472 | 5.520807e-49 | -8.615850e-47 |
Msa0910960 | Msa1392980 | 0.834414 | 3.038821e-56 | -8.615850e-47 |
Msa0934850 | Msa1392980 | 0.813821 | 2.108028e-51 | -8.615850e-47 |
Msa0940910 | Msa1392980 | 0.801560 | 8.500353e-49 | -8.615850e-47 |
Msa0944020 | Msa1392980 | 0.812794 | 3.543071e-51 | -8.615850e-47 |
Msa0944520 | Msa1392980 | 0.800307 | 1.532467e-48 | -8.615850e-47 |
Msa0946110 | Msa1392980 | 0.819036 | 1.433848e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1392980 | MtrunA17_Chr1g0182571 | 86.261 | 444 | 14 | 3 | 1 | 397 | 38 | 481 | 0.0 | 754 |
Msa1392980 | MtrunA17_Chr7g0262921 | 52.506 | 419 | 96 | 12 | 1 | 360 | 38 | 412 | 5.21e-122 | 360 |
Msa1392980 | MtrunA17_Chr8g0366741 | 48.000 | 50 | 26 | 0 | 1 | 50 | 44 | 93 | 3.74e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1392980 | AT2G37550.2 | 50.110 | 455 | 133 | 9 | 1 | 397 | 38 | 456 | 1.24e-123 | 365 |
Msa1392980 | AT2G37550.1 | 50.110 | 455 | 133 | 9 | 1 | 397 | 38 | 456 | 1.24e-123 | 365 |
Msa1392980 | AT3G53710.1 | 50.652 | 460 | 126 | 14 | 1 | 397 | 38 | 459 | 5.33e-119 | 353 |
Msa1392980 | AT3G53710.3 | 50.652 | 460 | 126 | 14 | 1 | 397 | 38 | 459 | 5.33e-119 | 353 |
Msa1392980 | AT3G53710.2 | 50.652 | 460 | 126 | 14 | 1 | 397 | 38 | 459 | 5.33e-119 | 353 |
Msa1392980 | AT2G35210.1 | 52.000 | 50 | 24 | 0 | 1 | 50 | 44 | 93 | 3.24e-12 | 68.2 |
Msa1392980 | AT2G35210.2 | 52.000 | 50 | 24 | 0 | 1 | 50 | 44 | 93 | 4.24e-12 | 67.4 |
Find 155 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCTGAAGAATTAAGATT+TGG | 0.281660 | tig0021591:+18389 | None:intergenic |
CTTCTTAATTTAACTTTGTA+TGG | 0.293258 | tig0021591:-18301 | Msa1392980:three_prime_UTR |
TGGGATAGGGAAGGAGGTTC+GGG | 0.309762 | tig0021591:-21361 | Msa1392980:CDS |
AAGAAAGCTGCTGGACATAA+TGG | 0.311171 | tig0021591:-19369 | Msa1392980:CDS |
CACAAAAGAGATTACTTCTA+AGG | 0.329121 | tig0021591:-20794 | Msa1392980:intron |
CTCAAACTCTTGGGACGATT+GGG | 0.331416 | tig0021591:-19625 | Msa1392980:CDS |
TATTTATACGCGGTCGCAAT+TGG | 0.334644 | tig0021591:-21254 | Msa1392980:CDS |
TTGGGATAGGGAAGGAGGTT+CGG | 0.345457 | tig0021591:-21362 | Msa1392980:CDS |
ATCCCAGCTCTTGGGATGAT+TGG | 0.345579 | tig0021591:-19521 | Msa1392980:CDS |
ATGATGCTGGTTGGGCTGGC+TGG | 0.346920 | tig0021591:-19443 | Msa1392980:CDS |
CAAATTCGACTACTAATAAC+TGG | 0.372531 | tig0021591:-19764 | Msa1392980:CDS |
CCGGTTGTGAAGGAGAATTT+AGG | 0.374910 | tig0021591:-21445 | Msa1392980:CDS |
GGAGTTGATCCTTTATTAGT+AGG | 0.375169 | tig0021591:+19576 | None:intergenic |
ATGATTCCGGCTGGGATGAT+TGG | 0.384077 | tig0021591:-21381 | Msa1392980:CDS |
TATTCATCTGGTGGGCAGTC+TGG | 0.394756 | tig0021591:-19552 | Msa1392980:CDS |
CTTCCTTCCTAGAATCTTTG+TGG | 0.398078 | tig0021591:+19496 | None:intergenic |
AAGGGAGAACCTACTAATAA+AGG | 0.401153 | tig0021591:-19585 | Msa1392980:CDS |
GACTGCCCACCAGATGAATA+AGG | 0.405430 | tig0021591:+19555 | None:intergenic |
GCTCTGAAGAATTAAGATTT+GGG | 0.409035 | tig0021591:+18390 | None:intergenic |
TGATAGAAATGGCTACTATC+AGG | 0.410799 | tig0021591:-19727 | Msa1392980:CDS |
GCTCAAACTCTTGGGACGAT+TGG | 0.416102 | tig0021591:-19626 | Msa1392980:CDS |
ATTGGGACCACAAAGATTCT+AGG | 0.416709 | tig0021591:-19503 | Msa1392980:CDS |
CCACAATAATGATGCTGGTT+GGG | 0.420450 | tig0021591:-19451 | Msa1392980:CDS |
TCCCAGCTCTTGGGATGATT+GGG | 0.422693 | tig0021591:-19520 | Msa1392980:CDS |
CGCCGATGGGGCAGAGTCGC+CGG | 0.424686 | tig0021591:-21408 | Msa1392980:CDS |
CGAAATGAGAATGATAGAAA+TGG | 0.430727 | tig0021591:-19738 | Msa1392980:CDS |
AAACTCAAAGCTCAAACTCT+TGG | 0.431090 | tig0021591:-19635 | Msa1392980:CDS |
AATAATGATGCTGGTTGGGC+TGG | 0.431540 | tig0021591:-19447 | Msa1392980:CDS |
TCGGTCGTGGCGTGATCCTC+CGG | 0.431712 | tig0021591:-21464 | Msa1392980:CDS |
TTCCTTCGGAATAGAATACT+TGG | 0.434318 | tig0021591:+21560 | None:intergenic |
TGATTCCGGCTGGGATGATT+GGG | 0.435890 | tig0021591:-21380 | Msa1392980:CDS |
TACTATCAGGATTTCAATCA+AGG | 0.437121 | tig0021591:-19714 | Msa1392980:CDS |
TACTCACAATCCCAGCTCTT+GGG | 0.438114 | tig0021591:-19529 | Msa1392980:CDS |
GGATCAACTCCTTATTCATC+TGG | 0.439382 | tig0021591:-19564 | Msa1392980:CDS |
GGAAGAGAACAATCTTCATC+AGG | 0.440220 | tig0021591:-19666 | Msa1392980:CDS |
AAATCAGATGACGCTTGGAC+AGG | 0.441545 | tig0021591:-19345 | Msa1392980:CDS |
GGGGATTGGTAAGTTGTCAT+TGG | 0.442974 | tig0021591:-20851 | Msa1392980:CDS |
ATTTACAAGTGTTGAAAGAA+AGG | 0.443584 | tig0021591:-18421 | Msa1392980:three_prime_UTR |
AGAAAGCTGCTGGACATAAT+GGG | 0.444118 | tig0021591:-19368 | Msa1392980:CDS |
TGCGACGGTGGAAGTCCTTC+CGG | 0.444137 | tig0021591:+21170 | None:intergenic |
CCTAAATTCTCCTTCACAAC+CGG | 0.446662 | tig0021591:+21445 | None:intergenic |
TCCGGAAAACACCGTGGTCT+CGG | 0.447372 | tig0021591:-21687 | Msa1392980:CDS |
AACTCAAAGCTCAAACTCTT+GGG | 0.448408 | tig0021591:-19634 | Msa1392980:CDS |
TGGGGAGCTGATGCTTTAGC+TGG | 0.452701 | tig0021591:+19471 | None:intergenic |
CATGGCTTTGGCTTCACAGA+AGG | 0.454790 | tig0021591:-19811 | Msa1392980:CDS |
AAGGAGAATTTAGGTTCAAA+GGG | 0.460070 | tig0021591:-21436 | Msa1392980:CDS |
AAAGGAGGTAATTCTTCTAC+TGG | 0.461732 | tig0021591:-19687 | Msa1392980:CDS |
CGGATTCAGGCTTTGTCGGA+AGG | 0.463866 | tig0021591:-21487 | Msa1392980:intron |
GTCCCAATCATCCCAAGAGC+TGG | 0.464845 | tig0021591:+19518 | None:intergenic |
TGATCGGATTCAGGCTTTGT+CGG | 0.466457 | tig0021591:-21491 | Msa1392980:intron |
GTAACAATATCCGTTTCCTT+CGG | 0.466590 | tig0021591:+21546 | None:intergenic |
TTCAAAGGGAAGGCCGCCGA+TGG | 0.468886 | tig0021591:-21422 | Msa1392980:CDS |
AATCAGATGACGCTTGGACA+GGG | 0.470359 | tig0021591:-19344 | Msa1392980:CDS |
CAGTCTCGAGATTGTTCCAT+TGG | 0.470757 | tig0021591:-18683 | Msa1392980:three_prime_UTR |
TGATGCTGGTTGGGCTGGCT+GGG | 0.473809 | tig0021591:-19442 | Msa1392980:CDS |
GTACTCACAATCCCAGCTCT+TGG | 0.474135 | tig0021591:-19530 | Msa1392980:CDS |
GAAGGAGAATTTAGGTTCAA+AGG | 0.482185 | tig0021591:-21437 | Msa1392980:CDS |
AGCTTCTGCGGCGGGTAAAG+AGG | 0.482654 | tig0021591:-21230 | Msa1392980:CDS |
CAGAGATTGGTCAAAGGACA+TGG | 0.483037 | tig0021591:-19851 | Msa1392980:CDS |
CCCAACCAGCATCATTATTG+TGG | 0.485486 | tig0021591:+19451 | None:intergenic |
TTTGAACGGCGGTGGTGCAC+CGG | 0.486910 | tig0021591:-21299 | Msa1392980:CDS |
ATTTAATTATCACAGGGGAT+TGG | 0.494169 | tig0021591:-20865 | Msa1392980:intron |
AGTCGCCGGAGTAATGATTC+CGG | 0.494324 | tig0021591:-21394 | Msa1392980:CDS |
AAGGACATGGGGTTTAATGA+AGG | 0.494662 | tig0021591:-19838 | Msa1392980:CDS |
TCATCTAATAAGAAAGCTGC+TGG | 0.498028 | tig0021591:-19378 | Msa1392980:CDS |
TCAAAGGGAAGGCCGCCGAT+GGG | 0.498527 | tig0021591:-21421 | Msa1392980:CDS |
CAGTCCTTTCACATGCATAG+TGG | 0.500156 | tig0021591:+18597 | None:intergenic |
GATAGGGAAGGAGGTTCGGG+TGG | 0.503166 | tig0021591:-21358 | Msa1392980:CDS |
GCCGGAGTAATGATTCCGGC+TGG | 0.503400 | tig0021591:-21390 | Msa1392980:CDS |
GCTGCTAATGCTGTTCAGAC+TGG | 0.505364 | tig0021591:-20817 | Msa1392980:CDS |
GGAAGGCGGTTATGATCAAA+AGG | 0.509923 | tig0021591:-19910 | Msa1392980:CDS |
CCCACAATAATGATGCTGGT+TGG | 0.515926 | tig0021591:-19452 | Msa1392980:CDS |
TTTGGCTTCACAGAAGGTTG+AGG | 0.518131 | tig0021591:-19805 | Msa1392980:CDS |
CAATTGGAAGCTTCTGCGGC+GGG | 0.519075 | tig0021591:-21238 | Msa1392980:CDS |
CTTTGTCGGAAGGTCGGTCG+TGG | 0.519720 | tig0021591:-21477 | Msa1392980:CDS |
CCAACCAGCATCATTATTGT+GGG | 0.519854 | tig0021591:+19452 | None:intergenic |
ACTCAAAAGACATCAGAGAT+TGG | 0.520352 | tig0021591:-19864 | Msa1392980:CDS |
ATGGGAAATCAGATGACGCT+TGG | 0.522747 | tig0021591:-19350 | Msa1392980:CDS |
GATCCGTCACCATGGATGCT+TGG | 0.527744 | tig0021591:-21644 | Msa1392980:CDS |
GATTTCGGACCAAGCATCCA+TGG | 0.529426 | tig0021591:+21635 | None:intergenic |
CCGGCTGGGATGATTGGGAT+AGG | 0.534746 | tig0021591:-21375 | Msa1392980:CDS |
GAACTGCTTATTCAACATCA+AGG | 0.544748 | tig0021591:+18270 | None:intergenic |
TTCAGGCTTTGTCGGAAGGT+CGG | 0.544881 | tig0021591:-21483 | Msa1392980:intron |
CTCCGGCGACTCTGCCCCAT+CGG | 0.545912 | tig0021591:+21406 | None:intergenic |
TTTAGGAATTTGAACGGCGG+TGG | 0.547735 | tig0021591:-21307 | Msa1392980:CDS |
GCTCCCCACAATAATGATGC+TGG | 0.549107 | tig0021591:-19456 | Msa1392980:CDS |
GTATTCTATTCCGAAGGAAA+CGG | 0.550054 | tig0021591:-21556 | Msa1392980:CDS |
CTCGAGACTGGTAATGCGGA+TGG | 0.554512 | tig0021591:+18696 | None:intergenic |
GCTTCTGCGGCGGGTAAAGA+GGG | 0.555155 | tig0021591:-21229 | Msa1392980:CDS |
CAATGGAACAATCTCGAGAC+TGG | 0.558227 | tig0021591:+18684 | None:intergenic |
AAACAATTCTTCCTGCACAT+AGG | 0.561143 | tig0021591:+18529 | None:intergenic |
CTTTCGGACTGATGACATGC+AGG | 0.562108 | tig0021591:-18642 | Msa1392980:three_prime_UTR |
GCGTGATCCTCCGGTTGTGA+AGG | 0.563730 | tig0021591:-21455 | Msa1392980:CDS |
TCCGTCGACCTCGATCTCGC+CGG | 0.565057 | tig0021591:+21280 | None:intergenic |
ATCAGATGACGCTTGGACAG+GGG | 0.565298 | tig0021591:-19343 | Msa1392980:CDS |
TGCCAAGTATTCTATTCCGA+AGG | 0.565535 | tig0021591:-21562 | Msa1392980:CDS |
TCTTTGTTTCAGGTCAAGGA+AGG | 0.567944 | tig0021591:-19927 | Msa1392980:intron |
TACTTCCCACCTTGCGACGG+TGG | 0.568939 | tig0021591:+21158 | None:intergenic |
GTCGCAATTGGAAGCTTCTG+CGG | 0.569797 | tig0021591:-21242 | Msa1392980:CDS |
CAAAGGGAAGGCCGCCGATG+GGG | 0.571024 | tig0021591:-21420 | Msa1392980:CDS |
AGAATTTAGGTTCAAAGGGA+AGG | 0.577046 | tig0021591:-21432 | Msa1392980:CDS |
TCAACTCCTTATTCATCTGG+TGG | 0.577122 | tig0021591:-19561 | Msa1392980:CDS |
CGGCTGGGATGATTGGGATA+GGG | 0.577559 | tig0021591:-21374 | Msa1392980:CDS |
TCGGAATAGAATACTTGGCA+AGG | 0.577709 | tig0021591:+21565 | None:intergenic |
TCCCAATCATCCCAAGAGCT+GGG | 0.579490 | tig0021591:+19519 | None:intergenic |
TTCATGTGCTTAGAATGCTC+CGG | 0.579995 | tig0021591:-21705 | Msa1392980:CDS |
GAAGGACTTCCACCGTCGCA+AGG | 0.582983 | tig0021591:-21167 | Msa1392980:intron |
TGGGATAATGCAAAAGATGA+TGG | 0.583815 | tig0021591:-19423 | Msa1392980:CDS |
GAGTTCCCAAAATGTTACAT+AGG | 0.584773 | tig0021591:+18467 | None:intergenic |
CCTATCCCAATCATCCCAGC+CGG | 0.584873 | tig0021591:+21375 | None:intergenic |
CCGGAGTAATGATTCCGGCT+GGG | 0.585313 | tig0021591:-21389 | Msa1392980:CDS |
TCAGATGACGCTTGGACAGG+GGG | 0.587832 | tig0021591:-19342 | Msa1392980:CDS |
GAGGTTCGGGTGGTGATGTG+AGG | 0.591884 | tig0021591:-21348 | Msa1392980:CDS |
GATGTGAGGAGTAAGTCGAC+GGG | 0.593326 | tig0021591:-21334 | Msa1392980:CDS |
TCAAACTCTTGGGACGATTG+GGG | 0.596473 | tig0021591:-19624 | Msa1392980:CDS |
TGGCGGAGAATGAGTCAAGC+CGG | 0.597511 | tig0021591:-21189 | Msa1392980:CDS |
AGGACATGGGGTTTAATGAA+GGG | 0.599160 | tig0021591:-19837 | Msa1392980:CDS |
GTGGTGCACCGGCGAGATCG+AGG | 0.600418 | tig0021591:-21288 | Msa1392980:CDS |
CCCAGCCGGAATCATTACTC+CGG | 0.606336 | tig0021591:+21389 | None:intergenic |
GCAATTGGAAGCTTCTGCGG+CGG | 0.607693 | tig0021591:-21239 | Msa1392980:CDS |
AAGCATCCATGGTGACGGAT+CGG | 0.610332 | tig0021591:+21646 | None:intergenic |
TTGTTTCAGGTCAAGGAAGG+CGG | 0.612416 | tig0021591:-19924 | Msa1392980:intron |
TTCAATCAAGGGAACAAAGG+AGG | 0.615582 | tig0021591:-19702 | Msa1392980:CDS |
AGAGATTGGTCAAAGGACAT+GGG | 0.615964 | tig0021591:-19850 | Msa1392980:CDS |
GGACATGGGGTTTAATGAAG+GGG | 0.616409 | tig0021591:-19836 | Msa1392980:CDS |
GATTTCAATCAAGGGAACAA+AGG | 0.616794 | tig0021591:-19705 | Msa1392980:CDS |
GGACCAAGCATCCATGGTGA+CGG | 0.618778 | tig0021591:+21641 | None:intergenic |
CATGGTGACGGATCGGACGA+AGG | 0.619426 | tig0021591:+21653 | None:intergenic |
CGGCGACTCTGCCCCATCGG+CGG | 0.622822 | tig0021591:+21409 | None:intergenic |
TGATGTGAGGAGTAAGTCGA+CGG | 0.623072 | tig0021591:-21335 | Msa1392980:CDS |
CAATCTCGAGACTGGTAATG+CGG | 0.626963 | tig0021591:+18692 | None:intergenic |
CTTCGTCCGATCCGTCACCA+TGG | 0.629444 | tig0021591:-21652 | Msa1392980:CDS |
AAAACCACTATGCATGTGAA+AGG | 0.630270 | tig0021591:-18601 | Msa1392980:three_prime_UTR |
ACATACTTCCCACCTTGCGA+CGG | 0.631937 | tig0021591:+21155 | None:intergenic |
GATGATTGGGATAGGGAAGG+AGG | 0.632481 | tig0021591:-21367 | Msa1392980:CDS |
AGACATCAGAGATTGGTCAA+AGG | 0.632664 | tig0021591:-19857 | Msa1392980:CDS |
CAACTCCTTATTCATCTGGT+GGG | 0.634524 | tig0021591:-19560 | Msa1392980:CDS |
GGACCACAAAGATTCTAGGA+AGG | 0.638994 | tig0021591:-19499 | Msa1392980:CDS |
GGAGAATGAGTCAAGCCGGA+AGG | 0.644382 | tig0021591:-21185 | Msa1392980:CDS |
ACTATCAGGATTTCAATCAA+GGG | 0.645448 | tig0021591:-19713 | Msa1392980:CDS |
GAGATTGGTCAAAGGACATG+GGG | 0.646826 | tig0021591:-19849 | Msa1392980:CDS |
GAAGAGAACAATCTTCATCA+GGG | 0.647329 | tig0021591:-19665 | Msa1392980:CDS |
GGCGAGATCGAGGTCGACGG+AGG | 0.649649 | tig0021591:-21278 | Msa1392980:CDS |
CAACCAGCATCATTATTGTG+GGG | 0.653135 | tig0021591:+19453 | None:intergenic |
ACCGGCGAGATCGAGGTCGA+CGG | 0.653631 | tig0021591:-21281 | Msa1392980:CDS |
TGGGATGATTGGGATAGGGA+AGG | 0.657232 | tig0021591:-21370 | Msa1392980:CDS |
AACTATGAGAGACACAACGA+AGG | 0.658598 | tig0021591:+18245 | None:intergenic |
ATGACATGCAGGCAAAGCCA+TGG | 0.659819 | tig0021591:-18631 | Msa1392980:three_prime_UTR |
AGATGTGAACACCGAGACCA+CGG | 0.664997 | tig0021591:+21676 | None:intergenic |
AAATTCTCCTTCACAACCGG+AGG | 0.674563 | tig0021591:+21448 | None:intergenic |
GACATGGGGTTTAATGAAGG+GGG | 0.697882 | tig0021591:-19835 | Msa1392980:CDS |
ATGTGAGGAGTAAGTCGACG+GGG | 0.706562 | tig0021591:-21333 | Msa1392980:CDS |
GAATGCTCCGGAAAACACCG+TGG | 0.731228 | tig0021591:-21693 | Msa1392980:CDS |
TGTGAGGAGTAAGTCGACGG+GGG | 0.747661 | tig0021591:-21332 | Msa1392980:CDS |
CGACGGAGGATATTTATACG+CGG | 0.767034 | tig0021591:-21264 | Msa1392980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTGTATTTAATTATCAC+AGG | - | tig0021591:19085-19104 | Msa1392980:intron | 15.0% |
!! | TATTGTATTTAATTATCACA+GGG | - | tig0021591:19086-19105 | Msa1392980:intron | 15.0% |
!! | AAAGAGCAAAAAAAAAAATT+AGG | + | tig0021591:20015-20034 | None:intergenic | 15.0% |
!!! | TTATCAGTGTTATAATTTTT+TGG | - | tig0021591:20895-20914 | Msa1392980:intron | 15.0% |
!!! | TATCAGTGTTATAATTTTTT+GGG | - | tig0021591:20896-20915 | Msa1392980:intron | 15.0% |
!! | TTATCTATTAAGGAAATAAA+TGG | - | tig0021591:21090-21109 | Msa1392980:intron | 15.0% |
!!! | TGATATTTTTATTTCAAATG+AGG | + | tig0021591:21219-21238 | None:intergenic | 15.0% |
!!! | CATTTTTTTGATTTGGATTT+CGG | + | tig0021591:18340-18359 | None:intergenic | 20.0% |
!! | ATTGTATTTAATTATCACAG+GGG | - | tig0021591:19087-19106 | Msa1392980:intron | 20.0% |
!!! | TATTTGGATTATTTTGTTCA+TGG | - | tig0021591:19186-19205 | Msa1392980:intron | 20.0% |
!!! | ATTTGGATTATTTTGTTCAT+GGG | - | tig0021591:19187-19206 | Msa1392980:intron | 20.0% |
!! | GAAAATTTGTATTTGTTTCA+CGG | - | tig0021591:19241-19260 | Msa1392980:intron | 20.0% |
!!! | TTCATTTATTTCTTTTTAGC+TGG | + | tig0021591:19550-19569 | None:intergenic | 20.0% |
!! | AGCTAAAAAGAAATAAATGA+AGG | - | tig0021591:19549-19568 | Msa1392980:CDS | 20.0% |
!! | GCTAAAAAGAAATAAATGAA+GGG | - | tig0021591:19550-19569 | Msa1392980:CDS | 20.0% |
!!! | TGTATTGATAATGTATTTGT+GGG | - | tig0021591:19605-19624 | Msa1392980:CDS | 20.0% |
!! | AAAAAAGGAAAGAAACTAAT+TGG | + | tig0021591:19875-19894 | None:intergenic | 20.0% |
!! | TATACCAATTAATGCAAAAA+AGG | + | tig0021591:19890-19909 | None:intergenic | 20.0% |
!! | AAATTAGGCAAAGAAAAAAT+GGG | + | tig0021591:20000-20019 | None:intergenic | 20.0% |
!! | AAAATTAGGCAAAGAAAAAA+TGG | + | tig0021591:20001-20020 | None:intergenic | 20.0% |
!! | CATTTACAAAATGTTAAGTA+GGG | + | tig0021591:20782-20801 | None:intergenic | 20.0% |
!! | TCATTTACAAAATGTTAAGT+AGG | + | tig0021591:20783-20802 | None:intergenic | 20.0% |
!!! | TTTTTTCCTATGTAACATTT+TGG | - | tig0021591:21484-21503 | Msa1392980:intron | 20.0% |
!!! | TTTTTCCTATGTAACATTTT+GGG | - | tig0021591:21485-21504 | Msa1392980:intron | 20.0% |
!!! | CTTCTTAATTTAACTTTGTA+TGG | - | tig0021591:21656-21675 | Msa1392980:CDS | 20.0% |
! | CGAAATCCAAATCAAAAAAA+TGG | - | tig0021591:18338-18357 | Msa1392980:three_prime_UTR | 25.0% |
!! | GAAAAATAATCATTTTGCTG+TGG | + | tig0021591:18868-18887 | None:intergenic | 25.0% |
!!! | TTATTTTTCTGTTGTTTCAC+AGG | - | tig0021591:18879-18898 | Msa1392980:intron | 25.0% |
! | TTGAATGTAATCAAATGTGT+CGG | + | tig0021591:18979-18998 | None:intergenic | 25.0% |
! | TGATTACATTCAATTACTAC+CGG | - | tig0021591:18986-19005 | Msa1392980:intron | 25.0% |
!!! | TTTGGATTATTTTGTTCATG+GGG | - | tig0021591:19188-19207 | Msa1392980:intron | 25.0% |
! | CAACAAATTGAACTAATACA+TGG | + | tig0021591:19290-19309 | None:intergenic | 25.0% |
!! | CTATTTGATAACACTTATCT+CGG | + | tig0021591:19401-19420 | None:intergenic | 25.0% |
! | TGACTGCATTAAAAAGATAA+CGG | + | tig0021591:19511-19530 | None:intergenic | 25.0% |
!!! | GTGTATTGATAATGTATTTG+TGG | - | tig0021591:19604-19623 | Msa1392980:CDS | 25.0% |
!!! | TGATTTTATTTCAATTGCAC+TGG | + | tig0021591:19834-19853 | None:intergenic | 25.0% |
!!! | CTTTCCTTTTTTGCATTAAT+TGG | - | tig0021591:19883-19902 | Msa1392980:CDS | 25.0% |
!!! | TTTTTTTTGCTCTTTGTTTC+AGG | - | tig0021591:20020-20039 | Msa1392980:intron | 25.0% |
!!! | GGATTTGATAACTTTTATGA+AGG | - | tig0021591:20555-20574 | Msa1392980:intron | 25.0% |
! | TTTCCTTAATAGATAACCAA+CGG | + | tig0021591:21086-21105 | None:intergenic | 25.0% |
!!! | AATATCATAATTTTTGGACC+AGG | - | tig0021591:21232-21251 | Msa1392980:CDS | 25.0% |
!!! | AGGAAGAATTGTTTTTTTTG+AGG | - | tig0021591:21437-21456 | Msa1392980:CDS | 25.0% |
! | ACATAGGAAAAAATTACAAG+TGG | + | tig0021591:21477-21496 | None:intergenic | 25.0% |
!! | TAGAACTATATTTTTCCAAC+CGG | + | tig0021591:21515-21534 | None:intergenic | 25.0% |
!!! | ATTTACAAGTGTTGAAAGAA+AGG | - | tig0021591:21536-21555 | Msa1392980:intron | 25.0% |
!!! | CAGCTTCCATTTTTTTGATT+TGG | + | tig0021591:18347-18366 | None:intergenic | 30.0% |
CAAATCAAAAAAATGGAAGC+TGG | - | tig0021591:18345-18364 | Msa1392980:three_prime_UTR | 30.0% | |
! | AAGGAGAATTTAGGTTCAAA+GGG | - | tig0021591:18521-18540 | Msa1392980:three_prime_UTR | 30.0% |
CATGCTTTATAGTTGATTAG+TGG | - | tig0021591:19039-19058 | Msa1392980:intron | 30.0% | |
ATTTAATTATCACAGGGGAT+TGG | - | tig0021591:19092-19111 | Msa1392980:intron | 30.0% | |
CACAAAAGAGATTACTTCTA+AGG | - | tig0021591:19163-19182 | Msa1392980:intron | 30.0% | |
!! | GAGATTACTTCTAAGGTATT+TGG | - | tig0021591:19170-19189 | Msa1392980:intron | 30.0% |
!! | GGGAATTGATAATGTTAACT+TGG | - | tig0021591:19625-19644 | Msa1392980:CDS | 30.0% |
! | TTATGACTTTTAGCATAGTG+TGG | - | tig0021591:19764-19783 | Msa1392980:CDS | 30.0% |
! | TATGACTTTTAGCATAGTGT+GGG | - | tig0021591:19765-19784 | Msa1392980:CDS | 30.0% |
CAAATTCGACTACTAATAAC+TGG | - | tig0021591:20193-20212 | Msa1392980:intron | 30.0% | |
CGAAATGAGAATGATAGAAA+TGG | - | tig0021591:20219-20238 | Msa1392980:intron | 30.0% | |
TACTATCAGGATTTCAATCA+AGG | - | tig0021591:20243-20262 | Msa1392980:intron | 30.0% | |
ACTATCAGGATTTCAATCAA+GGG | - | tig0021591:20244-20263 | Msa1392980:intron | 30.0% | |
! | AGATCATGCAAATCTTTTGT+AGG | - | tig0021591:20658-20677 | Msa1392980:intron | 30.0% |
!! | AGGCTTTCACATTTTATTTC+TGG | - | tig0021591:20678-20697 | Msa1392980:intron | 30.0% |
GTTAAGTAGGGATAAAGATT+GGG | + | tig0021591:20770-20789 | None:intergenic | 30.0% | |
TGTTAAGTAGGGATAAAGAT+TGG | + | tig0021591:20771-20790 | None:intergenic | 30.0% | |
!!! | GTGTTATAATTTTTTGGGAG+TGG | - | tig0021591:20901-20920 | Msa1392980:intron | 30.0% |
TGGAATTATTTAACACGACA+AGG | + | tig0021591:20954-20973 | None:intergenic | 30.0% | |
TAAATAATTCCAGCTAAGTG+CGG | - | tig0021591:20962-20981 | Msa1392980:intron | 30.0% | |
! | CAATTTTATAGGTTAGTGAG+TGG | + | tig0021591:21059-21078 | None:intergenic | 30.0% |
TTAGATACTTTAACCTGACA+TGG | - | tig0021591:21114-21133 | Msa1392980:intron | 30.0% | |
ACAAAAATTACTGCAGCTTT+CGG | - | tig0021591:21299-21318 | Msa1392980:CDS | 30.0% | |
!! | GCTCTGAAGAATTAAGATTT+GGG | + | tig0021591:21570-21589 | None:intergenic | 30.0% |
!! | TGCTCTGAAGAATTAAGATT+TGG | + | tig0021591:21571-21590 | None:intergenic | 30.0% |
ATCAAAAAAATGGAAGCTGG+TGG | - | tig0021591:18348-18367 | Msa1392980:three_prime_UTR | 35.0% | |
TTCCTTCGGAATAGAATACT+TGG | + | tig0021591:18400-18419 | None:intergenic | 35.0% | |
GTATTCTATTCCGAAGGAAA+CGG | - | tig0021591:18401-18420 | Msa1392980:three_prime_UTR | 35.0% | |
GTAACAATATCCGTTTCCTT+CGG | + | tig0021591:18414-18433 | None:intergenic | 35.0% | |
! | GAAGGAGAATTTAGGTTCAA+AGG | - | tig0021591:18520-18539 | Msa1392980:three_prime_UTR | 35.0% |
! | AGAATTTAGGTTCAAAGGGA+AGG | - | tig0021591:18525-18544 | Msa1392980:three_prime_UTR | 35.0% |
!! | GGGGATTTTAGGAATTTGAA+CGG | - | tig0021591:18644-18663 | Msa1392980:three_prime_UTR | 35.0% |
!! | GATTTTAGGAATTTGAACGG+CGG | - | tig0021591:18647-18666 | Msa1392980:three_prime_UTR | 35.0% |
!!! | ATTTTTTGCGAAGAAGATGG+CGG | - | tig0021591:18751-18770 | Msa1392980:intron | 35.0% |
ACATGGTAGAAATATCCCTA+AGG | + | tig0021591:19273-19292 | None:intergenic | 35.0% | |
!!! | TAGCTGTTTTTCGAATTCCA+CGG | + | tig0021591:19357-19376 | None:intergenic | 35.0% |
TGATGTGTGATTGACAATAC+TGG | - | tig0021591:19481-19500 | Msa1392980:CDS | 35.0% | |
TCAGAACAGTGGATGTTAAT+TGG | - | tig0021591:19721-19740 | Msa1392980:CDS | 35.0% | |
ACAGTGGATGTTAATTGGAT+CGG | - | tig0021591:19726-19745 | Msa1392980:CDS | 35.0% | |
! | ATGACTTTTAGCATAGTGTG+GGG | - | tig0021591:19766-19785 | Msa1392980:CDS | 35.0% |
!! | TGCTAACTGTTTGCTTTTCA+CGG | - | tig0021591:19961-19980 | Msa1392980:intron | 35.0% |
ACTCAAAAGACATCAGAGAT+TGG | - | tig0021591:20093-20112 | Msa1392980:intron | 35.0% | |
TGATAGAAATGGCTACTATC+AGG | - | tig0021591:20230-20249 | Msa1392980:intron | 35.0% | |
GATTTCAATCAAGGGAACAA+AGG | - | tig0021591:20252-20271 | Msa1392980:intron | 35.0% | |
AAAGGAGGTAATTCTTCTAC+TGG | - | tig0021591:20270-20289 | Msa1392980:intron | 35.0% | |
GAAGAGAACAATCTTCATCA+GGG | - | tig0021591:20292-20311 | Msa1392980:intron | 35.0% | |
AAACTCAAAGCTCAAACTCT+TGG | - | tig0021591:20322-20341 | Msa1392980:intron | 35.0% | |
AACTCAAAGCTCAAACTCTT+GGG | - | tig0021591:20323-20342 | Msa1392980:intron | 35.0% | |
AAGGGAGAACCTACTAATAA+AGG | - | tig0021591:20372-20391 | Msa1392980:intron | 35.0% | |
! | GGAGTTGATCCTTTATTAGT+AGG | + | tig0021591:20384-20403 | None:intergenic | 35.0% |
TGGGATAATGCAAAAGATGA+TGG | - | tig0021591:20534-20553 | Msa1392980:intron | 35.0% | |
TCATCTAATAAGAAAGCTGC+TGG | - | tig0021591:20579-20598 | Msa1392980:intron | 35.0% | |
CCTCTCATATACACAGTTAT+AGG | + | tig0021591:20710-20729 | None:intergenic | 35.0% | |
CCTATAACTGTGTATATGAG+AGG | - | tig0021591:20707-20726 | Msa1392980:intron | 35.0% | |
ATATTAAAGGGAGAGATGAG+AGG | + | tig0021591:20929-20948 | None:intergenic | 35.0% | |
CACGACAAGGTCATATTAAA+GGG | + | tig0021591:20941-20960 | None:intergenic | 35.0% | |
ACACGACAAGGTCATATTAA+AGG | + | tig0021591:20942-20961 | None:intergenic | 35.0% | |
! | TGACCGTTGGTTATCTATTA+AGG | - | tig0021591:21080-21099 | Msa1392980:intron | 35.0% |
! | GCAGTAATTTTTGTCACCAA+TGG | + | tig0021591:21293-21312 | None:intergenic | 35.0% |
!! | TCACATGCATAGTGGTTTTA+GGG | + | tig0021591:21355-21374 | None:intergenic | 35.0% |
! | TTCACATGCATAGTGGTTTT+AGG | + | tig0021591:21356-21375 | None:intergenic | 35.0% |
AAAACCACTATGCATGTGAA+AGG | - | tig0021591:21356-21375 | Msa1392980:CDS | 35.0% | |
AAACTCAAAAACCTATGTGC+AGG | - | tig0021591:21417-21436 | Msa1392980:CDS | 35.0% | |
AAACAATTCTTCCTGCACAT+AGG | + | tig0021591:21431-21450 | None:intergenic | 35.0% | |
GAGTTCCCAAAATGTTACAT+AGG | + | tig0021591:21493-21512 | None:intergenic | 35.0% | |
!! | ATGTAACATTTTGGGAACTC+CGG | - | tig0021591:21493-21512 | Msa1392980:intron | 35.0% |
GAACTGCTTATTCAACATCA+AGG | + | tig0021591:21690-21709 | None:intergenic | 35.0% | |
TCGGAATAGAATACTTGGCA+AGG | + | tig0021591:18395-18414 | None:intergenic | 40.0% | |
TGCCAAGTATTCTATTCCGA+AGG | - | tig0021591:18395-18414 | Msa1392980:three_prime_UTR | 40.0% | |
CCTAAATTCTCCTTCACAAC+CGG | + | tig0021591:18515-18534 | None:intergenic | 40.0% | |
TATTTATACGCGGTCGCAAT+TGG | - | tig0021591:18703-18722 | Msa1392980:three_prime_UTR | 40.0% | |
!!! | GGGATTTTTTGCGAAGAAGA+TGG | - | tig0021591:18748-18767 | Msa1392980:intron | 40.0% |
CATGACTCGTCGAAAAACAA+AGG | + | tig0021591:18924-18943 | None:intergenic | 40.0% | |
GCTATCTGATAACACTGTAG+TGG | + | tig0021591:19326-19345 | None:intergenic | 40.0% | |
CTAGTATGCTATAGCACTAC+AGG | + | tig0021591:19431-19450 | None:intergenic | 40.0% | |
TAGAGGAAAGCTGTTGAATG+AGG | - | tig0021591:19789-19808 | Msa1392980:CDS | 40.0% | |
AGCTGTTGAATGAGGTCAAT+AGG | - | tig0021591:19797-19816 | Msa1392980:CDS | 40.0% | |
GCTGTTGAATGAGGTCAATA+GGG | - | tig0021591:19798-19817 | Msa1392980:CDS | 40.0% | |
AGTACCTTCATGATTGTCTC+TGG | - | tig0021591:19924-19943 | Msa1392980:intron | 40.0% | |
!! | GCTTTTCACGGTATTTTTGC+TGG | - | tig0021591:19973-19992 | Msa1392980:intron | 40.0% |
! | TTGCTCTTTGTTTCAGGTCA+AGG | - | tig0021591:20026-20045 | Msa1392980:intron | 40.0% |
! | TCTTTGTTTCAGGTCAAGGA+AGG | - | tig0021591:20030-20049 | Msa1392980:intron | 40.0% |
! | AGACATCAGAGATTGGTCAA+AGG | - | tig0021591:20100-20119 | Msa1392980:intron | 40.0% |
! | AGAGATTGGTCAAAGGACAT+GGG | - | tig0021591:20107-20126 | Msa1392980:intron | 40.0% |
AAGGACATGGGGTTTAATGA+AGG | - | tig0021591:20119-20138 | Msa1392980:intron | 40.0% | |
AGGACATGGGGTTTAATGAA+GGG | - | tig0021591:20120-20139 | Msa1392980:intron | 40.0% | |
TTCAATCAAGGGAACAAAGG+AGG | - | tig0021591:20255-20274 | Msa1392980:intron | 40.0% | |
GGAAGAGAACAATCTTCATC+AGG | - | tig0021591:20291-20310 | Msa1392980:intron | 40.0% | |
ATTGGGGCCAAAAAGATAGT+TGG | - | tig0021591:20349-20368 | Msa1392980:intron | 40.0% | |
GGCCAAAAAGATAGTTGGAA+GGG | - | tig0021591:20354-20373 | Msa1392980:intron | 40.0% | |
! | CTCCCTTCCAACTATCTTTT+TGG | + | tig0021591:20359-20378 | None:intergenic | 40.0% |
GGATCAACTCCTTATTCATC+TGG | - | tig0021591:20393-20412 | Msa1392980:intron | 40.0% | |
TCAACTCCTTATTCATCTGG+TGG | - | tig0021591:20396-20415 | Msa1392980:intron | 40.0% | |
CAACTCCTTATTCATCTGGT+GGG | - | tig0021591:20397-20416 | Msa1392980:intron | 40.0% | |
ATTGGGACCACAAAGATTCT+AGG | - | tig0021591:20454-20473 | Msa1392980:intron | 40.0% | |
CTTCCTTCCTAGAATCTTTG+TGG | + | tig0021591:20464-20483 | None:intergenic | 40.0% | |
CAACCAGCATCATTATTGTG+GGG | + | tig0021591:20507-20526 | None:intergenic | 40.0% | |
CCAACCAGCATCATTATTGT+GGG | + | tig0021591:20508-20527 | None:intergenic | 40.0% | |
! | CCACAATAATGATGCTGGTT+GGG | - | tig0021591:20506-20525 | Msa1392980:intron | 40.0% |
AAGAAAGCTGCTGGACATAA+TGG | - | tig0021591:20588-20607 | Msa1392980:intron | 40.0% | |
AGAAAGCTGCTGGACATAAT+GGG | - | tig0021591:20589-20608 | Msa1392980:intron | 40.0% | |
! | TTTTGCCCAATCTCTTCTCT+TGG | - | tig0021591:20808-20827 | Msa1392980:CDS | 40.0% |
TGAAGTTCAGTGGTCATGTA+GGG | + | tig0021591:20842-20861 | None:intergenic | 40.0% | |
GGATTATTCCTGAAGTTCAG+TGG | + | tig0021591:20852-20871 | None:intergenic | 40.0% | |
CAGGAATAATCCATGCTACT+TGG | - | tig0021591:20860-20879 | Msa1392980:intron | 40.0% | |
! | TAATCCATGCTACTTGGAGT+TGG | - | tig0021591:20866-20885 | Msa1392980:intron | 40.0% |
ATTTCCAACTCCAAGTAGCA+TGG | + | tig0021591:20873-20892 | None:intergenic | 40.0% | |
!! | AGAATGCTTCTAGCTTTGAG+TGG | - | tig0021591:20985-21004 | Msa1392980:intron | 40.0% |
TGACATTGCAGACAAGTAGA+AGG | - | tig0021591:21016-21035 | Msa1392980:intron | 40.0% | |
GACATTGCAGACAAGTAGAA+GGG | - | tig0021591:21017-21036 | Msa1392980:intron | 40.0% | |
! | CCAACGGTCAGCAATTTTAT+AGG | + | tig0021591:21070-21089 | None:intergenic | 40.0% |
CCTATAAAATTGCTGACCGT+TGG | - | tig0021591:21067-21086 | Msa1392980:intron | 40.0% | |
!!! | CACATGCATAGTGGTTTTAG+GGG | + | tig0021591:21354-21373 | None:intergenic | 40.0% |
!! | AGCAGCGTTGGTGTTATACT+TGG | + | tig0021591:18436-18455 | None:intergenic | 45.0% |
GCTGCTTCGTTTATCGTGAT+CGG | - | tig0021591:18450-18469 | Msa1392980:three_prime_UTR | 45.0% | |
CGTTTATCGTGATCGGATTC+AGG | - | tig0021591:18457-18476 | Msa1392980:three_prime_UTR | 45.0% | |
! | TGATCGGATTCAGGCTTTGT+CGG | - | tig0021591:18466-18485 | Msa1392980:three_prime_UTR | 45.0% |
AAATTCTCCTTCACAACCGG+AGG | + | tig0021591:18512-18531 | None:intergenic | 45.0% | |
CCGGTTGTGAAGGAGAATTT+AGG | - | tig0021591:18512-18531 | Msa1392980:three_prime_UTR | 45.0% | |
TGATGTGAGGAGTAAGTCGA+CGG | - | tig0021591:18622-18641 | Msa1392980:three_prime_UTR | 45.0% | |
TTTAGGAATTTGAACGGCGG+TGG | - | tig0021591:18650-18669 | Msa1392980:three_prime_UTR | 45.0% | |
CGACGGAGGATATTTATACG+CGG | - | tig0021591:18693-18712 | Msa1392980:three_prime_UTR | 45.0% | |
! | GGGGATTGGTAAGTTGTCAT+TGG | - | tig0021591:19106-19125 | Msa1392980:intron | 45.0% |
TGTTTCACGGAATGCACCTT+AGG | - | tig0021591:19254-19273 | Msa1392980:intron | 45.0% | |
GTTTCACGGAATGCACCTTA+GGG | - | tig0021591:19255-19274 | Msa1392980:intron | 45.0% | |
TCAGATAGCTGATATAGCCG+TGG | - | tig0021591:19337-19356 | Msa1392980:CDS | 45.0% | |
TCTCGGCATATCACAAATCG+TGG | + | tig0021591:19384-19403 | None:intergenic | 45.0% | |
TTTAGCATAGTGTGGGGTAG+AGG | - | tig0021591:19772-19791 | Msa1392980:CDS | 45.0% | |
GATGCCAGAGACAATCATGA+AGG | + | tig0021591:19931-19950 | None:intergenic | 45.0% | |
! | TTGTTTCAGGTCAAGGAAGG+CGG | - | tig0021591:20033-20052 | Msa1392980:intron | 45.0% |
GGAAGGCGGTTATGATCAAA+AGG | - | tig0021591:20047-20066 | Msa1392980:intron | 45.0% | |
! | CAGAGATTGGTCAAAGGACA+TGG | - | tig0021591:20106-20125 | Msa1392980:intron | 45.0% |
! | GAGATTGGTCAAAGGACATG+GGG | - | tig0021591:20108-20127 | Msa1392980:intron | 45.0% |
GGACATGGGGTTTAATGAAG+GGG | - | tig0021591:20121-20140 | Msa1392980:intron | 45.0% | |
GACATGGGGTTTAATGAAGG+GGG | - | tig0021591:20122-20141 | Msa1392980:intron | 45.0% | |
! | TTTGGCTTCACAGAAGGTTG+AGG | - | tig0021591:20152-20171 | Msa1392980:intron | 45.0% |
CTCAAACTCTTGGGACGATT+GGG | - | tig0021591:20332-20351 | Msa1392980:intron | 45.0% | |
TCAAACTCTTGGGACGATTG+GGG | - | tig0021591:20333-20352 | Msa1392980:intron | 45.0% | |
GGGCCAAAAAGATAGTTGGA+AGG | - | tig0021591:20353-20372 | Msa1392980:intron | 45.0% | |
TACTCACAATCCCAGCTCTT+GGG | - | tig0021591:20428-20447 | Msa1392980:intron | 45.0% | |
! | GGACCACAAAGATTCTAGGA+AGG | - | tig0021591:20458-20477 | Msa1392980:intron | 45.0% |
CCCACAATAATGATGCTGGT+TGG | - | tig0021591:20505-20524 | Msa1392980:intron | 45.0% | |
CCCAACCAGCATCATTATTG+TGG | + | tig0021591:20509-20528 | None:intergenic | 45.0% | |
! | AATAATGATGCTGGTTGGGC+TGG | - | tig0021591:20510-20529 | Msa1392980:intron | 45.0% |
ATGGGAAATCAGATGACGCT+TGG | - | tig0021591:20607-20626 | Msa1392980:intron | 45.0% | |
AAATCAGATGACGCTTGGAC+AGG | - | tig0021591:20612-20631 | Msa1392980:intron | 45.0% | |
AATCAGATGACGCTTGGACA+GGG | - | tig0021591:20613-20632 | Msa1392980:intron | 45.0% | |
CGAGACCAAGAGAAGAGATT+GGG | + | tig0021591:20816-20835 | None:intergenic | 45.0% | |
ACGAGACCAAGAGAAGAGAT+TGG | + | tig0021591:20817-20836 | None:intergenic | 45.0% | |
CTGAAGTTCAGTGGTCATGT+AGG | + | tig0021591:20843-20862 | None:intergenic | 45.0% | |
CTACATGACCACTGAACTTC+AGG | - | tig0021591:20841-20860 | Msa1392980:CDS | 45.0% | |
!! | TGCTTCTAGCTTTGAGTGGA+AGG | - | tig0021591:20989-21008 | Msa1392980:intron | 45.0% |
!! | TCTAGCTTTGAGTGGAAGGT+AGG | - | tig0021591:20993-21012 | Msa1392980:intron | 45.0% |
CTGCATCATATGACCATGTC+AGG | + | tig0021591:21130-21149 | None:intergenic | 45.0% | |
TAATGCGGATGGATGAAACC+TGG | + | tig0021591:21253-21272 | None:intergenic | 45.0% | |
! | CAATCTCGAGACTGGTAATG+CGG | + | tig0021591:21268-21287 | None:intergenic | 45.0% |
CAATGGAACAATCTCGAGAC+TGG | + | tig0021591:21276-21295 | None:intergenic | 45.0% | |
CAGTCTCGAGATTGTTCCAT+TGG | - | tig0021591:21274-21293 | Msa1392980:CDS | 45.0% | |
CAGTCCTTTCACATGCATAG+TGG | + | tig0021591:21363-21382 | None:intergenic | 45.0% | |
!! | AACATTTTGGGAACTCCGGT+TGG | - | tig0021591:21497-21516 | Msa1392980:intron | 45.0% |
!!! | AATAAAAATATCATAATTTT+TGG | - | tig0021591:21226-21245 | Msa1392980:CDS | 5.0% |
AGATGTGAACACCGAGACCA+CGG | + | tig0021591:18284-18303 | None:intergenic | 50.0% | |
!! | AAGCATCCATGGTGACGGAT+CGG | + | tig0021591:18314-18333 | None:intergenic | 50.0% |
GATTTCGGACCAAGCATCCA+TGG | + | tig0021591:18325-18344 | None:intergenic | 50.0% | |
CACGATAAACGAAGCAGCGT+TGG | + | tig0021591:18448-18467 | None:intergenic | 50.0% | |
! | TTCAGGCTTTGTCGGAAGGT+CGG | - | tig0021591:18474-18493 | Msa1392980:three_prime_UTR | 50.0% |
AGTCGCCGGAGTAATGATTC+CGG | - | tig0021591:18563-18582 | Msa1392980:three_prime_UTR | 50.0% | |
ATGATTCCGGCTGGGATGAT+TGG | - | tig0021591:18576-18595 | Msa1392980:three_prime_UTR | 50.0% | |
TGATTCCGGCTGGGATGATT+GGG | - | tig0021591:18577-18596 | Msa1392980:three_prime_UTR | 50.0% | |
TGGGATGATTGGGATAGGGA+AGG | - | tig0021591:18587-18606 | Msa1392980:three_prime_UTR | 50.0% | |
GATGATTGGGATAGGGAAGG+AGG | - | tig0021591:18590-18609 | Msa1392980:three_prime_UTR | 50.0% | |
TTGGGATAGGGAAGGAGGTT+CGG | - | tig0021591:18595-18614 | Msa1392980:three_prime_UTR | 50.0% | |
GATGTGAGGAGTAAGTCGAC+GGG | - | tig0021591:18623-18642 | Msa1392980:three_prime_UTR | 50.0% | |
ATGTGAGGAGTAAGTCGACG+GGG | - | tig0021591:18624-18643 | Msa1392980:three_prime_UTR | 50.0% | |
! | GTAAGTCGACGGGGGATTTT+AGG | - | tig0021591:18633-18652 | Msa1392980:three_prime_UTR | 50.0% |
GTCGCAATTGGAAGCTTCTG+CGG | - | tig0021591:18715-18734 | Msa1392980:intron | 50.0% | |
ACATACTTCCCACCTTGCGA+CGG | + | tig0021591:18805-18824 | None:intergenic | 50.0% | |
! | TCGCAAGGTGGGAAGTATGT+TGG | - | tig0021591:18805-18824 | Msa1392980:intron | 50.0% |
! | CGCAAGGTGGGAAGTATGTT+GGG | - | tig0021591:18806-18825 | Msa1392980:intron | 50.0% |
! | GGTGGGAAGTATGTTGGGTT+CGG | - | tig0021591:18811-18830 | Msa1392980:intron | 50.0% |
! | TTGCTCCTCTGTGAAGGCAT+CGG | + | tig0021591:18844-18863 | None:intergenic | 50.0% |
! | TGTGGATTGCTCCTCTGTGA+AGG | + | tig0021591:18850-18869 | None:intergenic | 50.0% |
GCTGCTAATGCTGTTCAGAC+TGG | - | tig0021591:19140-19159 | Msa1392980:intron | 50.0% | |
! | ATCCACTGTTCTGAGCAACG+AGG | + | tig0021591:19715-19734 | None:intergenic | 50.0% |
GGGTTTAATGAAGGGGGTCA+TGG | - | tig0021591:20128-20147 | Msa1392980:intron | 50.0% | |
AATGAAGGGGGTCATGGCTT+TGG | - | tig0021591:20134-20153 | Msa1392980:intron | 50.0% | |
!! | CATGGCTTTGGCTTCACAGA+AGG | - | tig0021591:20146-20165 | Msa1392980:intron | 50.0% |
GCTCAAACTCTTGGGACGAT+TGG | - | tig0021591:20331-20350 | Msa1392980:intron | 50.0% | |
GACTGCCCACCAGATGAATA+AGG | + | tig0021591:20405-20424 | None:intergenic | 50.0% | |
! | TATTCATCTGGTGGGCAGTC+TGG | - | tig0021591:20405-20424 | Msa1392980:intron | 50.0% |
GTACTCACAATCCCAGCTCT+TGG | - | tig0021591:20427-20446 | Msa1392980:intron | 50.0% | |
ATCCCAGCTCTTGGGATGAT+TGG | - | tig0021591:20436-20455 | Msa1392980:intron | 50.0% | |
TCCCAGCTCTTGGGATGATT+GGG | - | tig0021591:20437-20456 | Msa1392980:intron | 50.0% | |
TCCCAATCATCCCAAGAGCT+GGG | + | tig0021591:20441-20460 | None:intergenic | 50.0% | |
GCTCCCCACAATAATGATGC+TGG | - | tig0021591:20501-20520 | Msa1392980:intron | 50.0% | |
ATCAGATGACGCTTGGACAG+GGG | - | tig0021591:20614-20633 | Msa1392980:intron | 50.0% | |
AAGCATTCTCCGCACTTAGC+TGG | + | tig0021591:20974-20993 | None:intergenic | 50.0% | |
CTTTCGGACTGATGACATGC+AGG | - | tig0021591:21315-21334 | Msa1392980:CDS | 50.0% | |
ATGACATGCAGGCAAAGCCA+TGG | - | tig0021591:21326-21345 | Msa1392980:CDS | 50.0% | |
!!! | TAGTGGTTTTAGGGGCACCA+TGG | + | tig0021591:21346-21365 | None:intergenic | 50.0% |
GAATGCTCCGGAAAACACCG+TGG | - | tig0021591:18264-18283 | Msa1392980:three_prime_UTR | 55.0% | |
TCCGGAAAACACCGTGGTCT+CGG | - | tig0021591:18270-18289 | Msa1392980:three_prime_UTR | 55.0% | |
! | ACCGAGACCACGGTGTTTTC+CGG | + | tig0021591:18274-18293 | None:intergenic | 55.0% |
GATCCGTCACCATGGATGCT+TGG | - | tig0021591:18313-18332 | Msa1392980:three_prime_UTR | 55.0% | |
GGACCAAGCATCCATGGTGA+CGG | + | tig0021591:18319-18338 | None:intergenic | 55.0% | |
! | CGGATTCAGGCTTTGTCGGA+AGG | - | tig0021591:18470-18489 | Msa1392980:three_prime_UTR | 55.0% |
CCCAGCCGGAATCATTACTC+CGG | + | tig0021591:18571-18590 | None:intergenic | 55.0% | |
CCGGAGTAATGATTCCGGCT+GGG | - | tig0021591:18568-18587 | Msa1392980:three_prime_UTR | 55.0% | |
CCTATCCCAATCATCCCAGC+CGG | + | tig0021591:18585-18604 | None:intergenic | 55.0% | |
CGGCTGGGATGATTGGGATA+GGG | - | tig0021591:18583-18602 | Msa1392980:three_prime_UTR | 55.0% | |
TGGGATAGGGAAGGAGGTTC+GGG | - | tig0021591:18596-18615 | Msa1392980:three_prime_UTR | 55.0% | |
TGTGAGGAGTAAGTCGACGG+GGG | - | tig0021591:18625-18644 | Msa1392980:three_prime_UTR | 55.0% | |
GCAATTGGAAGCTTCTGCGG+CGG | - | tig0021591:18718-18737 | Msa1392980:intron | 55.0% | |
CAATTGGAAGCTTCTGCGGC+GGG | - | tig0021591:18719-18738 | Msa1392980:intron | 55.0% | |
TGGCGGAGAATGAGTCAAGC+CGG | - | tig0021591:18768-18787 | Msa1392980:intron | 55.0% | |
GGAGAATGAGTCAAGCCGGA+AGG | - | tig0021591:18772-18791 | Msa1392980:intron | 55.0% | |
CTAGTCCGATGCCTTCACAG+AGG | - | tig0021591:18836-18855 | Msa1392980:intron | 55.0% | |
! | TACCGGTGTCAGTGTTGTGC+CGG | - | tig0021591:19003-19022 | Msa1392980:intron | 55.0% |
TGCCTCGTTGCTCAGAACAG+TGG | - | tig0021591:19710-19729 | Msa1392980:CDS | 55.0% | |
GTCCCAATCATCCCAAGAGC+TGG | + | tig0021591:20442-20461 | None:intergenic | 55.0% | |
TGGGGAGCTGATGCTTTAGC+TGG | + | tig0021591:20489-20508 | None:intergenic | 55.0% | |
TCAGATGACGCTTGGACAGG+GGG | - | tig0021591:20615-20634 | Msa1392980:intron | 55.0% | |
ACAGGGGGTGGCTTTCTCTA+AGG | - | tig0021591:20630-20649 | Msa1392980:intron | 55.0% | |
! | CTCGAGACTGGTAATGCGGA+TGG | + | tig0021591:21264-21283 | None:intergenic | 55.0% |
!! | CATGGTGACGGATCGGACGA+AGG | + | tig0021591:18307-18326 | None:intergenic | 60.0% |
CTTCGTCCGATCCGTCACCA+TGG | - | tig0021591:18305-18324 | Msa1392980:three_prime_UTR | 60.0% | |
CTTTGTCGGAAGGTCGGTCG+TGG | - | tig0021591:18480-18499 | Msa1392980:three_prime_UTR | 60.0% | |
GCGTGATCCTCCGGTTGTGA+AGG | - | tig0021591:18502-18521 | Msa1392980:three_prime_UTR | 60.0% | |
TTCAAAGGGAAGGCCGCCGA+TGG | - | tig0021591:18535-18554 | Msa1392980:three_prime_UTR | 60.0% | |
TCAAAGGGAAGGCCGCCGAT+GGG | - | tig0021591:18536-18555 | Msa1392980:three_prime_UTR | 60.0% | |
GCCGGAGTAATGATTCCGGC+TGG | - | tig0021591:18567-18586 | Msa1392980:three_prime_UTR | 60.0% | |
CCGGCTGGGATGATTGGGAT+AGG | - | tig0021591:18582-18601 | Msa1392980:three_prime_UTR | 60.0% | |
GATAGGGAAGGAGGTTCGGG+TGG | - | tig0021591:18599-18618 | Msa1392980:three_prime_UTR | 60.0% | |
! | GAGGTTCGGGTGGTGATGTG+AGG | - | tig0021591:18609-18628 | Msa1392980:three_prime_UTR | 60.0% |
TTTGAACGGCGGTGGTGCAC+CGG | - | tig0021591:18658-18677 | Msa1392980:three_prime_UTR | 60.0% | |
AGCTTCTGCGGCGGGTAAAG+AGG | - | tig0021591:18727-18746 | Msa1392980:intron | 60.0% | |
GCTTCTGCGGCGGGTAAAGA+GGG | - | tig0021591:18728-18747 | Msa1392980:intron | 60.0% | |
TGCGACGGTGGAAGTCCTTC+CGG | + | tig0021591:18790-18809 | None:intergenic | 60.0% | |
GAAGGACTTCCACCGTCGCA+AGG | - | tig0021591:18790-18809 | Msa1392980:intron | 60.0% | |
GACTTCCACCGTCGCAAGGT+GGG | - | tig0021591:18794-18813 | Msa1392980:intron | 60.0% | |
TACTTCCCACCTTGCGACGG+TGG | + | tig0021591:18802-18821 | None:intergenic | 60.0% | |
! | ACCGGTGTCAGTGTTGTGCC+GGG | - | tig0021591:19004-19023 | Msa1392980:intron | 60.0% |
ACCCGGCACAACACTGACAC+CGG | + | tig0021591:19008-19027 | None:intergenic | 60.0% | |
AGCATGCGCACACACACACC+CGG | + | tig0021591:19025-19044 | None:intergenic | 60.0% | |
!! | ATGATGCTGGTTGGGCTGGC+TGG | - | tig0021591:20514-20533 | Msa1392980:intron | 60.0% |
!! | TGATGCTGGTTGGGCTGGCT+GGG | - | tig0021591:20515-20534 | Msa1392980:intron | 60.0% |
TCGGTCGTGGCGTGATCCTC+CGG | - | tig0021591:18493-18512 | Msa1392980:three_prime_UTR | 65.0% | |
CAAAGGGAAGGCCGCCGATG+GGG | - | tig0021591:18537-18556 | Msa1392980:three_prime_UTR | 65.0% | |
ACCGGCGAGATCGAGGTCGA+CGG | - | tig0021591:18676-18695 | Msa1392980:three_prime_UTR | 65.0% | |
TCCGTCGACCTCGATCTCGC+CGG | + | tig0021591:18680-18699 | None:intergenic | 65.0% | |
GGACTTCCACCGTCGCAAGG+TGG | - | tig0021591:18793-18812 | Msa1392980:intron | 65.0% | |
GATGACGCTTGGACAGGGGG+TGG | - | tig0021591:20618-20637 | Msa1392980:intron | 65.0% | |
CTCCGGCGACTCTGCCCCAT+CGG | + | tig0021591:18554-18573 | None:intergenic | 70.0% | |
! | GTGGTGCACCGGCGAGATCG+AGG | - | tig0021591:18669-18688 | Msa1392980:three_prime_UTR | 70.0% |
GGCGAGATCGAGGTCGACGG+AGG | - | tig0021591:18679-18698 | Msa1392980:three_prime_UTR | 70.0% | |
CGGCGACTCTGCCCCATCGG+CGG | + | tig0021591:18551-18570 | None:intergenic | 75.0% | |
CGCCGATGGGGCAGAGTCGC+CGG | - | tig0021591:18549-18568 | Msa1392980:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021591 | gene | 18255 | 21724 | 18255 | ID=Msa1392980;Name=Msa1392980 |
tig0021591 | mRNA | 18255 | 21724 | 18255 | ID=Msa1392980-mRNA-1;Parent=Msa1392980;Name=Msa1392980-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.5|0.6|1|0.75|0.6|5|472|397 |
tig0021591 | exon | 18255 | 18725 | 18255 | ID=Msa1392980-mRNA-1:exon:13590;Parent=Msa1392980-mRNA-1 |
tig0021591 | exon | 19328 | 19937 | 19328 | ID=Msa1392980-mRNA-1:exon:13589;Parent=Msa1392980-mRNA-1 |
tig0021591 | exon | 20795 | 20872 | 20795 | ID=Msa1392980-mRNA-1:exon:13588;Parent=Msa1392980-mRNA-1 |
tig0021591 | exon | 21168 | 21500 | 21168 | ID=Msa1392980-mRNA-1:exon:13587;Parent=Msa1392980-mRNA-1 |
tig0021591 | exon | 21551 | 21724 | 21551 | ID=Msa1392980-mRNA-1:exon:13586;Parent=Msa1392980-mRNA-1 |
tig0021591 | CDS | 21551 | 21724 | 21551 | ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1 |
tig0021591 | CDS | 21168 | 21500 | 21168 | ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1 |
tig0021591 | CDS | 20795 | 20872 | 20795 | ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1 |
tig0021591 | CDS | 19329 | 19937 | 19329 | ID=Msa1392980-mRNA-1:cds;Parent=Msa1392980-mRNA-1 |
tig0021591 | three_prime_UTR | 19328 | 19328 | 19328 | ID=Msa1392980-mRNA-1:three_prime_utr;Parent=Msa1392980-mRNA-1 |
tig0021591 | three_prime_UTR | 18255 | 18725 | 18255 | ID=Msa1392980-mRNA-1:three_prime_utr;Parent=Msa1392980-mRNA-1 |
Gene Sequence |
Protein sequence |