AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449640 MtrunA17_Chr6g0468801 55.191 549 212 5 187 729 257 777 0.0 587
Msa0449640 MtrunA17_Chr1g0208691 49.156 533 251 2 215 727 758 1290 4.56e-168 518
Msa0449640 MtrunA17_Chr2g0302511 46.886 546 263 4 204 729 70 608 7.29e-166 491
Msa0449640 MtrunA17_Chr6g0480691 48.065 491 235 2 260 730 1 491 1.31e-163 481
Msa0449640 MtrunA17_Chr1g0208701 49.902 511 236 2 215 705 758 1268 6.71e-163 504
Msa0449640 MtrunA17_Chr7g0219281 48.178 494 233 4 260 731 1 493 2.77e-159 470
Msa0449640 MtrunA17_Chr4g0056611 46.095 525 263 2 227 731 435 959 8.53e-156 477
Msa0449640 MtrunA17_Chr6g0474211 45.102 541 274 5 212 729 226 766 1.18e-152 463
Msa0449640 MtrunA17_Chr3g0122931 45.992 524 260 2 224 724 489 1012 1.15e-151 467
Msa0449640 MtrunA17_Chr7g0235811 44.151 530 274 3 224 731 75 604 6.45e-150 450
Msa0449640 MtrunA17_Chr3g0122161 46.047 506 248 5 243 724 976 1480 4.81e-139 444
Msa0449640 MtrunA17_Chr1g0213431 46.047 506 248 5 243 724 965 1469 6.45e-139 444
Msa0449640 MtrunA17_Chr7g0271061 44.664 506 255 5 243 724 989 1493 3.31e-138 442
Msa0449640 MtrunA17_Chr2g0279231 43.992 516 263 5 234 724 385 899 1.49e-137 427
Msa0449640 MtrunA17_Chr3g0117621 44.664 506 255 5 243 724 989 1493 2.03e-137 440
Msa0449640 MtrunA17_Chr2g0320651 45.866 508 248 6 243 724 976 1482 1.01e-136 438
Msa0449640 MtrunA17_Chr2g0319451 45.852 458 217 5 214 644 177 630 1.01e-135 414
Msa0449640 MtrunA17_Chr5g0395921 45.437 515 252 7 234 724 839 1348 3.31e-134 429
Msa0449640 MtrunA17_Chr5g0447551 44.581 489 251 3 260 728 1 489 1.01e-132 411
Msa0449640 MtrunA17_Chr8g0390891 40.519 501 273 4 242 717 463 963 5.79e-131 412
Msa0449640 MtrunA17_Chr8g0363051 41.837 490 264 2 256 724 262 751 8.76e-131 405
Msa0449640 MtrunA17_Chr3g0144121 39.504 524 289 6 219 717 812 1332 5.14e-128 412
Msa0449640 MtrunA17_Chr3g0085391 39.130 506 268 4 243 727 2 488 2.77e-123 377
Msa0449640 MtrunA17_Chr1g0153361 38.986 513 291 3 235 726 1191 1702 1.66e-115 382
Msa0449640 MtrunA17_Chr3g0101191 39.258 512 288 4 241 730 806 1316 4.64e-109 360
Msa0449640 MtrunA17_Chr8g0351191 39.364 503 268 11 242 710 265 764 4.68e-109 349
Msa0449640 MtrunA17_Chr2g0326511 44.301 386 192 4 368 731 1 385 2.32e-106 329
Msa0449640 MtrunA17_Chr2g0321931 40.796 402 210 6 219 595 177 575 7.08e-102 324
Msa0449640 MtrunA17_Chr8g0373061 44.034 352 176 2 263 593 4 355 1.00e-95 301
Msa0449640 MtrunA17_Chr7g0229241 34.722 504 294 7 243 711 766 1269 2.10e-92 313
Msa0449640 MtrunA17_Chr1g0213471 43.622 392 196 5 357 724 3 393 2.23e-91 291
Msa0449640 MtrunA17_Chr8g0337151 41.322 363 193 3 381 724 16 377 8.97e-90 286
Msa0449640 MtrunA17_Chr1g0162991 37.931 406 225 4 337 720 2 402 7.91e-88 282
Msa0449640 MtrunA17_Chr5g0416531 41.905 315 163 3 328 622 1 315 3.62e-78 253
Msa0449640 MtrunA17_Chr1g0168011 56.545 191 83 0 539 729 1 191 9.81e-69 224
Msa0449640 MtrunA17_Chr6g0478321 42.800 250 123 2 414 644 6 254 2.44e-63 212
Msa0449640 MtrunA17_Chr3g0107241 38.976 254 136 1 451 685 4 257 4.06e-57 195
Msa0449640 MtrunA17_Chr5g0417451 43.556 225 121 3 507 728 43 264 1.18e-56 194
Msa0449640 MtrunA17_Chr7g0248591 39.269 219 133 0 506 724 16 234 7.06e-48 169
Msa0449640 MtrunA17_Chr1g0202521 45.294 170 93 0 541 710 3 172 7.86e-42 150
Msa0449640 MtrunA17_Chr7g0214321 40.323 186 105 2 542 724 4 186 1.14e-35 133
Msa0449640 MtrunA17_Chr1g0182471 36.872 179 113 0 546 724 8 186 1.04e-34 130
Msa0449640 MtrunA17_Chr4g0005281 41.401 157 90 1 568 724 13 167 1.31e-34 130
Msa0449640 MtrunA17_Chr2g0313121 49.565 115 58 0 224 338 202 316 1.86e-33 131
Msa0449640 MtrunA17_Chr7g0224631 44.361 133 74 0 511 643 31 163 2.25e-31 120
Msa0449640 MtrunA17_Chr3g0093291 93.333 60 4 0 113 172 313 372 2.57e-26 112
Msa0449640 MtrunA17_Chr6g0476561 60.274 73 29 0 263 335 4 76 4.93e-23 93.6
Msa0449640 MtrunA17_Chr5g0441001 73.770 61 16 0 113 173 320 380 1.35e-21 97.8
Msa0449640 MtrunA17_Chr1g0201931 41.509 106 61 1 381 485 2 107 1.95e-18 81.3
Msa0449640 MtrunA17_Chr6g0467561 42.353 85 49 0 627 711 1 85 3.63e-15 71.6
Msa0449640 MtrunA17_Chr5g0412691 41.379 87 48 2 412 497 3 87 6.83e-15 72.0
Msa0449640 MtrunA17_Chr2g0302321 41.860 86 48 1 309 392 5 90 1.59e-14 69.7
Msa0449640 MtrunA17_Chr5g0417461 49.383 81 41 0 243 323 314 394 1.95e-14 75.9
Msa0449640 MtrunA17_Chr8g0335561 30.579 121 81 1 542 659 4 124 2.01e-14 70.5
Msa0449640 MtrunA17_Chr3g0097441 51.786 56 27 0 505 560 15 70 5.96e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449640 AT4G23160.3 43.238 488 252 2 224 686 66 553 1.04e-135 426
Msa0449640 AT4G23160.2 43.238 488 252 2 224 686 66 553 1.04e-135 426
Msa0449640 ATMG00810.1 41.256 223 113 1 432 636 3 225 2.63e-51 179
Msa0449640 ATMG00820.1 49.495 99 50 0 243 341 27 125 2.75e-24 100
Msa0449640 AT3G20320.1 81.967 61 11 0 113 173 319 379 2.79e-24 106
Msa0449640 ATMG00240.1 43.038 79 45 0 519 597 1 79 2.00e-16 76.3

Find 160 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTACCTCAATGTTCTTC+AGG 0.224980 3_3:+34012725 None:intergenic
ACGATTCTGCTTTGTTTATT+AGG 0.238019 3_3:-34009045 Msa0449640:CDS
GCGTTGGTTACTTTCTGATA+TGG 0.247727 3_3:-34008381 Msa0449640:CDS
AGACCGAGTTATGAGAAATT+TGG 0.260851 3_3:+34008306 None:intergenic
ATTAGAAAGGGATTCTATTC+TGG 0.265330 3_3:-34013997 Msa0449640:CDS
CCTTCAGGAAAACGTGCTAT+TGG 0.268651 3_3:-34009457 Msa0449640:CDS
AGGCTATACTTGACCCTCTT+TGG 0.268762 3_3:-34009546 Msa0449640:CDS
CATTCTTGGGCCCATTCTAT+TGG 0.269793 3_3:+34013738 None:intergenic
TGCACGCAAGTTCACATTCT+TGG 0.270160 3_3:+34013724 None:intergenic
ACAAGAGGGGTGTCAATATC+TGG 0.292790 3_3:+34009754 None:intergenic
ACCAGGTGTTTCTCATAATC+AGG 0.298968 3_3:-34009179 Msa0449640:CDS
GGTGAATATGAGAGAGTAAA+TGG 0.300560 3_3:+34012747 None:intergenic
CAAACTCATGACGCATTAAT+AGG 0.310832 3_3:+34008110 None:intergenic
GGTACTCTTCGCTACTTCTT+GGG 0.311380 3_3:-34008896 Msa0449640:CDS
TTCGCATTCTTCGTTATCTT+CGG 0.316195 3_3:-34008640 Msa0449640:CDS
TGAGAGAGTAAATGGACTTC+TGG 0.323054 3_3:+34012755 None:intergenic
TGGATCAGTTCAGTGTTCTC+AGG 0.336084 3_3:+34012775 None:intergenic
TCGCATTCTTCGTTATCTTC+GGG 0.342926 3_3:-34008639 Msa0449640:CDS
GTGCTTATTCTGATGCTGAT+TGG 0.347637 3_3:-34008565 Msa0449640:CDS
CGTTGGTTACTTTCTGATAT+GGG 0.352665 3_3:-34008380 Msa0449640:CDS
ATGCGTGGGAGAAGGGGTGC+TGG 0.363911 3_3:-34013773 Msa0449640:CDS
CTGGCCGTATGCGTGGGAGA+AGG 0.367334 3_3:-34013781 Msa0449640:CDS
CAAGAAACGAAAATGTTTGA+TGG 0.367969 3_3:+34008154 None:intergenic
CTTCAGGAAAACGTGCTATT+GGG 0.369193 3_3:-34009456 Msa0449640:CDS
GGATAACGAGGAGGAGAAGA+AGG 0.371739 3_3:+34009685 None:intergenic
TGCTTATTCTGATGCTGATT+GGG 0.372523 3_3:-34008564 Msa0449640:CDS
TAGAGTAGGTGTGTATTTGC+AGG 0.373043 3_3:-34013895 Msa0449640:CDS
GTCAAGTATAGCCTCTTTAT+AGG 0.375640 3_3:+34009555 None:intergenic
ACTTCAAGAGGAAGTTTATA+TGG 0.378145 3_3:-34009209 Msa0449640:CDS
GCACGCAAGTTCACATTCTT+GGG 0.378197 3_3:+34013725 None:intergenic
AAGAATGTTGGCAATGTACT+TGG 0.382306 3_3:+34008829 None:intergenic
GAATTAGTACCTCTTCCTTC+AGG 0.387029 3_3:-34009472 Msa0449640:CDS
CCACCACCACTGAAATAGTT+TGG 0.387475 3_3:-34008406 Msa0449640:CDS
TGACACCCCTCTTGTCCCCT+TGG 0.393894 3_3:-34009746 Msa0449640:CDS
AGGTACTCTTCGCTACTTCT+TGG 0.394954 3_3:-34008897 Msa0449640:CDS
AAAATCAAAACTAAGTTTGA+TGG 0.399645 3_3:-34009418 Msa0449640:CDS
AACAATTGCAGGAGGTTGTT+GGG 0.407822 3_3:+34009720 None:intergenic
AAGGGGTGCTGGGAGAGGAG+TGG 0.409190 3_3:-34013762 Msa0449640:CDS
TAAGTGGAATAGACAAAATC+AGG 0.412126 3_3:+34009634 None:intergenic
TCAATGGCATATTTCTCAAA+TGG 0.416274 3_3:-34009260 Msa0449640:CDS
TGGCCGTATGCGTGGGAGAA+GGG 0.416892 3_3:-34013780 Msa0449640:CDS
GGGAGAAGGGGTGCTGGGAG+AGG 0.418246 3_3:-34013767 Msa0449640:CDS
AAGTTGAAGAAGGCTGTATA+TGG 0.419676 3_3:-34009145 Msa0449640:CDS
ACTTGACCCTCTTTGGCAAC+AGG 0.422255 3_3:-34009539 Msa0449640:CDS
ATTTGCAGGCCCAACCTTGT+AGG 0.424686 3_3:-34013881 Msa0449640:CDS
CAACAATTGCAGGAGGTTGT+TGG 0.426636 3_3:+34009719 None:intergenic
CCCTCTTTGGCAACAGGCTA+TGG 0.427546 3_3:-34009533 Msa0449640:CDS
ACTACTGTGATTACATCTCT+TGG 0.428336 3_3:-34009085 Msa0449640:CDS
AGGGGTGCTGGCCGTATGCG+TGG 0.431562 3_3:-34013788 Msa0449640:CDS
CTCTCCCACTACAGTACATT+GGG 0.435175 3_3:-34008672 Msa0449640:CDS
AGCCAAGCAGTTTGAGATGA+AGG 0.438041 3_3:-34008924 Msa0449640:CDS
AGCAAAAGAAGCAGAGTAAG+TGG 0.439292 3_3:+34009618 None:intergenic
AGAGGAGTGGGCCAATAGAA+TGG 0.450844 3_3:-34013749 Msa0449640:CDS
GGATCAGTTCAGTGTTCTCA+GGG 0.455512 3_3:+34012776 None:intergenic
CAGTTTGAGATGAAGGATCT+AGG 0.458974 3_3:-34008917 Msa0449640:CDS
AGGGGTGCTGGGAGAGGAGT+GGG 0.463043 3_3:-34013761 Msa0449640:CDS
TCGTACTTTAGTTGGCAGTT+TGG 0.464947 3_3:-34008759 Msa0449640:CDS
GATAACGAGGAGGAGAAGAA+GGG 0.465208 3_3:+34009686 None:intergenic
ATTACATGTGATGATGTTGA+TGG 0.470650 3_3:-34008971 Msa0449640:CDS
TTATCACAATACATTGGAGT+TGG 0.470803 3_3:+34008341 None:intergenic
AAAGCACACCTTGTTGCTAA+AGG 0.473880 3_3:-34009379 Msa0449640:CDS
AGACTTCATCCTACAAGGTT+GGG 0.474219 3_3:+34013872 None:intergenic
ACAGTCAATTTCAATGTGAT+TGG 0.474611 3_3:+34008271 None:intergenic
TGGATCAATTGCTATTAGAA+AGG 0.478055 3_3:-34014010 Msa0449640:CDS
TCCTACCTCAATGTTCTTCA+GGG 0.479771 3_3:+34012726 None:intergenic
ACGTGCTATTGGGTCTCGTT+GGG 0.479852 3_3:-34009446 Msa0449640:CDS
TGAACGACATAAGCAATATC+AGG 0.481900 3_3:+34008716 None:intergenic
GAGGAGTGGGCCAATAGAAT+GGG 0.483783 3_3:-34013748 Msa0449640:CDS
GACATAAGCAATATCAGGTC+TGG 0.487822 3_3:+34008721 None:intergenic
CAGTTGCATCTATTCGTCAA+TGG 0.489493 3_3:-34009276 Msa0449640:CDS
TTTATTAGGTCCACTTCTCA+TGG 0.489940 3_3:-34009031 Msa0449640:CDS
GTTGGCAATGTACTTGGATT+GGG 0.490038 3_3:+34008835 None:intergenic
GGATCAGGATCAACAATTGC+AGG 0.492603 3_3:+34009709 None:intergenic
AAGTATAAATGTGCAATATG+TGG 0.493786 3_3:-34014030 Msa0449640:CDS
TGTTGGCAATGTACTTGGAT+TGG 0.494272 3_3:+34008834 None:intergenic
ACTTTGTATCGTACTTTAGT+TGG 0.495479 3_3:-34008767 Msa0449640:CDS
CTGAAATAGTTTGGTTGCGT+TGG 0.497131 3_3:-34008397 Msa0449640:CDS
TATAGCCTCTTTATAGGAAG+AGG 0.500407 3_3:+34009561 None:intergenic
AACGTGCTATTGGGTCTCGT+TGG 0.503472 3_3:-34009447 Msa0449640:CDS
CACCCCTTCTCCCACGCATA+CGG 0.505327 3_3:+34013777 None:intergenic
TGCGTGGGAGAAGGGGTGCT+GGG 0.507350 3_3:-34013772 Msa0449640:CDS
GGATCAATTGCTATTAGAAA+GGG 0.507912 3_3:-34014009 Msa0449640:CDS
CGCATTCTTCGTTATCTTCG+GGG 0.514060 3_3:-34008638 Msa0449640:CDS
GAGACTTCATCCTACAAGGT+TGG 0.514100 3_3:+34013871 None:intergenic
GGAGGTTGTTGGGCAACCAA+GGG 0.519212 3_3:+34009730 None:intergenic
ATCCTTCATCTCAAACTGCT+TGG 0.521228 3_3:+34008922 None:intergenic
TACTAATCAAGTCTCTCAGC+AGG 0.524421 3_3:-34012552 Msa0449640:intron
ATAGTAGTCATCTTAGCCAC+TGG 0.525668 3_3:+34009313 None:intergenic
CTCAGATAAACAATGAATAG+AGG 0.527904 3_3:+34009585 None:intergenic
AAATCAAAACTAAGTTTGAT+GGG 0.530451 3_3:-34009417 Msa0449640:CDS
AGGAGGTTGTTGGGCAACCA+AGG 0.530573 3_3:+34009729 None:intergenic
GTGGTGGACTTACGATATGT+CGG 0.532414 3_3:+34008533 None:intergenic
TGAAACAAGCTCTGCGAGCA+TGG 0.536885 3_3:-34009120 Msa0449640:CDS
GGCCGTATGCGTGGGAGAAG+GGG 0.539031 3_3:-34013779 Msa0449640:CDS
TGAGCCCTCTTCCTATAAAG+AGG 0.539803 3_3:-34009566 Msa0449640:CDS
CCAAACTATTTCAGTGGTGG+TGG 0.543380 3_3:+34008406 None:intergenic
TATTCTGATGCTGATTGGGT+CGG 0.543970 3_3:-34008560 Msa0449640:CDS
ATAACGAGGAGGAGAAGAAG+GGG 0.546547 3_3:+34009687 None:intergenic
CATCCAAATTTCTCATAACT+CGG 0.547159 3_3:-34008309 Msa0449640:CDS
CTTTGCACAAGACAAATACA+TGG 0.547506 3_3:-34009495 Msa0449640:CDS
ACTCGTCATCATCTTCAAGA+TGG 0.548417 3_3:-34008242 Msa0449640:CDS
AGGGAAGTTGAAGTTAGAGT+AGG 0.548700 3_3:-34013909 Msa0449640:CDS
CCATAGCCTGTTGCCAAAGA+GGG 0.552578 3_3:+34009533 None:intergenic
GTTTATATGGAACCTCCACC+AGG 0.553879 3_3:-34009196 Msa0449640:CDS
TGGTGGACTTACGATATGTC+GGG 0.554054 3_3:+34008534 None:intergenic
AAGGTAGCCTCTCTTAGAGT+AGG 0.554105 3_3:+34008862 None:intergenic
TCTAAATGGTGAACTTCAAG+AGG 0.559894 3_3:-34009221 Msa0449640:CDS
AGAAGCTGAGTACCGTGCTA+TGG 0.560175 3_3:-34008432 Msa0449640:CDS
GGGCAACCAAGGGGACAAGA+GGG 0.560487 3_3:+34009740 None:intergenic
GGGGTGCTGGCCGTATGCGT+GGG 0.561264 3_3:-34013787 Msa0449640:CDS
ACATATCGTAAGTCCACCAC+AGG 0.561348 3_3:-34008530 Msa0449640:CDS
TTGAGTAGACTTACGATGAC+AGG 0.564973 3_3:+34009660 None:intergenic
ACCATAGCCTGTTGCCAAAG+AGG 0.567203 3_3:+34009532 None:intergenic
TAAAATACGACCATGAGAAG+TGG 0.570750 3_3:+34009021 None:intergenic
GTACTCTTCGCTACTTCTTG+GGG 0.572815 3_3:-34008895 Msa0449640:CDS
AGCTGCCCAATGTACTGTAG+TGG 0.574288 3_3:+34008667 None:intergenic
TCTCTCCCACTACAGTACAT+TGG 0.575604 3_3:-34008673 Msa0449640:CDS
GTGAGTCTGTTCAAGAATGT+TGG 0.577324 3_3:+34008817 None:intergenic
AACTCTAATGAGGACGATGA+TGG 0.578076 3_3:+34008590 None:intergenic
ATAAGCACATAACTCTAATG+AGG 0.579444 3_3:+34008580 None:intergenic
AACTAAAGTACGATACAAAG+TGG 0.579621 3_3:+34008769 None:intergenic
GCAAGAGACTTCATCCTACA+AGG 0.584544 3_3:+34013867 None:intergenic
TGAAGTGTGTAAGTTGAAGA+AGG 0.584767 3_3:-34009155 Msa0449640:CDS
TGGGCAACCAAGGGGACAAG+AGG 0.586375 3_3:+34009739 None:intergenic
AGCCGCTCAAATGAAAAGCT+CGG 0.587008 3_3:-34013843 Msa0449640:CDS
TATCAGGTCTGGTAATCGTA+AGG 0.587508 3_3:+34008732 None:intergenic
TTACATGTGATGATGTTGAT+GGG 0.596303 3_3:-34008970 Msa0449640:CDS
GCTGCCCAATGTACTGTAGT+GGG 0.596662 3_3:+34008668 None:intergenic
CCAGGTGTTTCTCATAATCA+GGG 0.599113 3_3:-34009178 Msa0449640:CDS
TTATGAGAAACACCTGGTGG+AGG 0.604284 3_3:+34009184 None:intergenic
CAAATGAAAAGCTCGGTCAA+AGG 0.605454 3_3:-34013836 Msa0449640:CDS
ATAGCCTCTTTATAGGAAGA+GGG 0.610788 3_3:+34009562 None:intergenic
AGAAAGGGATTCTATTCTGG+AGG 0.615725 3_3:-34013994 Msa0449640:CDS
TGTACTTGGATTGGGAGAGA+AGG 0.615936 3_3:+34008843 None:intergenic
AAAGATACAAAACCCTGTGG+TGG 0.618454 3_3:+34008517 None:intergenic
TGCAAGGAGGACGAGACGAA+CGG 0.619735 3_3:+34008206 None:intergenic
CGATGACAGGATGGATAACG+AGG 0.622163 3_3:+34009673 None:intergenic
CGAGTTATGAGAAATTTGGA+TGG 0.625717 3_3:+34008310 None:intergenic
GAGGTTGTTGGGCAACCAAG+GGG 0.630780 3_3:+34009731 None:intergenic
GAGAAAATCCTTTAGCAACA+AGG 0.631703 3_3:+34009371 None:intergenic
TGGTGGTGGACGCCATAGCA+CGG 0.635766 3_3:+34008420 None:intergenic
CCCTGATTATGAGAAACACC+TGG 0.636462 3_3:+34009178 None:intergenic
GAAGTTACCTACTCTAAGAG+AGG 0.647960 3_3:-34008869 Msa0449640:CDS
GGCAACCAAGGGGACAAGAG+GGG 0.648757 3_3:+34009741 None:intergenic
CAACCAAACTATTTCAGTGG+TGG 0.653645 3_3:+34008403 None:intergenic
GAACAAATCAGCAATCTGCA+AGG 0.655980 3_3:+34008190 None:intergenic
ATTCACCCTGAAGAACATTG+AGG 0.656518 3_3:-34012731 Msa0449640:intron
ACTAAAGTACGATACAAAGT+GGG 0.658368 3_3:+34008770 None:intergenic
ACGCAACCAAACTATTTCAG+TGG 0.661713 3_3:+34008400 None:intergenic
TTTATGGTCCGTATGCGTGG+GGG 0.668696 3_3:-34013812 Msa0449640:CDS
TAACGAGGAGGAGAAGAAGG+GGG 0.674549 3_3:+34009688 None:intergenic
TCAGGATCAACAATTGCAGG+AGG 0.688734 3_3:+34009712 None:intergenic
GTAGACTTACGATGACAGGA+TGG 0.690708 3_3:+34009664 None:intergenic
GATCAGTTCAGTGTTCTCAG+GGG 0.695950 3_3:+34012777 None:intergenic
CAAATCAGCAATCTGCAAGG+AGG 0.702168 3_3:+34008193 None:intergenic
TTTGCACAAGACAAATACAT+GGG 0.715986 3_3:-34009494 Msa0449640:CDS
CATATCGTAAGTCCACCACA+GGG 0.724349 3_3:-34008529 Msa0449640:CDS
TGACAGGATGGATAACGAGG+AGG 0.729262 3_3:+34009676 None:intergenic
TGATTATGAGAAACACCTGG+TGG 0.741836 3_3:+34009181 None:intergenic
AAGAAAGATACAAAACCCTG+TGG 0.745791 3_3:+34008514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAATAAGAATTTTGTTT+TGG - chr3_3:34009492-34009511 Msa0449640:CDS 10.0%
!!! AATAAAGAGTTTTTTTTTTT+TGG + chr3_3:34010618-34010637 None:intergenic 10.0%
!! TTATTATACTTTATTCTTTA+AGG - chr3_3:34010633-34010652 Msa0449640:intron 10.0%
!!! TTGATTTTAAGAAAAAAAAA+TGG - chr3_3:34010916-34010935 Msa0449640:intron 10.0%
!!! ATCATTTTTTTAAATCATTT+TGG - chr3_3:34011343-34011362 Msa0449640:intron 10.0%
!! AATAAATAACAATAAAGTAA+AGG - chr3_3:34011788-34011807 Msa0449640:intron 10.0%
!!! TGAAATTTTGAATTATTATG+AGG + chr3_3:34010854-34010873 None:intergenic 15.0%
!! CTTATAAATTACAAAAAGAA+TGG - chr3_3:34011130-34011149 Msa0449640:intron 15.0%
!!! AATAAATTATATTTAGCCTT+AGG + chr3_3:34011190-34011209 None:intergenic 15.0%
!! ATTGCATAATATTATATTTC+AGG + chr3_3:34012157-34012176 None:intergenic 15.0%
!! ATTTGAAAACAGAGAAATAA+TGG + chr3_3:34008726-34008745 None:intergenic 20.0%
!! TTCAATTATCTTCTGAATTA+AGG + chr3_3:34009221-34009240 None:intergenic 20.0%
!! GGAAAGTTAAATATTTATCA+CGG + chr3_3:34009797-34009816 None:intergenic 20.0%
!! ACAAGTTAAACCATAAATTA+AGG + chr3_3:34009866-34009885 None:intergenic 20.0%
!!! ACTTGTTTTTTTTTTTAGCA+TGG - chr3_3:34009880-34009899 Msa0449640:intron 20.0%
!! TCTTTCATATCTAATTTGAT+AGG - chr3_3:34010188-34010207 Msa0449640:intron 20.0%
!!! TTTTAAAAATTTTACTGTGC+AGG - chr3_3:34010558-34010577 Msa0449640:intron 20.0%
!!! TTTAAAAATTTTACTGTGCA+GGG - chr3_3:34010559-34010578 Msa0449640:intron 20.0%
!!! TTTGGGAGTTTTAAAAAAAT+AGG - chr3_3:34010726-34010745 Msa0449640:intron 20.0%
!!! TTGGGAGTTTTAAAAAAATA+GGG - chr3_3:34010727-34010746 Msa0449640:intron 20.0%
!!! AGTTTTAAAAAAATAGGGAA+AGG - chr3_3:34010732-34010751 Msa0449640:intron 20.0%
!! AAATTACAAAAAGAATGGTA+AGG - chr3_3:34011135-34011154 Msa0449640:intron 20.0%
!!! TTAAATCATTTTGGTATTTC+AGG - chr3_3:34011352-34011371 Msa0449640:intron 20.0%
!! TTTCAGGAATAAATATTTGA+TGG + chr3_3:34012141-34012160 None:intergenic 20.0%
!! AAAATCAAAACTAAGTTTGA+TGG - chr3_3:34012747-34012766 Msa0449640:CDS 20.0%
!! AAATCAAAACTAAGTTTGAT+GGG - chr3_3:34012748-34012767 Msa0449640:CDS 20.0%
!! GTTAAAAATGCATTTCTAAA+TGG - chr3_3:34012930-34012949 Msa0449640:intron 20.0%
!!! TTAGAGATTCTTTTATTTCT+TGG - chr3_3:34013672-34013691 Msa0449640:intron 20.0%
! AAGTATAAATGTGCAATATG+TGG - chr3_3:34008135-34008154 Msa0449640:CDS 25.0%
! AGGGGTAATATAATATAATG+TGG - chr3_3:34008564-34008583 Msa0449640:CDS 25.0%
! GGGGTAATATAATATAATGT+GGG - chr3_3:34008565-34008584 Msa0449640:CDS 25.0%
! TTAATACTGGAATGGTAAAA+TGG + chr3_3:34008669-34008688 None:intergenic 25.0%
! AAATGGAATTAATACTGGAA+TGG + chr3_3:34008677-34008696 None:intergenic 25.0%
! TAAGCAAATGGAATTAATAC+TGG + chr3_3:34008682-34008701 None:intergenic 25.0%
! TTAATTCCATTTGCTTAACT+CGG - chr3_3:34008685-34008704 Msa0449640:CDS 25.0%
! TTAAAAAAACTCACTCAGAA+TGG - chr3_3:34008958-34008977 Msa0449640:CDS 25.0%
! TTAACATTCTTGAACTAGAA+TGG - chr3_3:34009287-34009306 Msa0449640:CDS 25.0%
!!! TATTCGCCATTTTAAGTTTA+TGG + chr3_3:34009465-34009484 None:intergenic 25.0%
!!! AATGTTAGCTCTGATATTTT+AGG - chr3_3:34009552-34009571 Msa0449640:CDS 25.0%
!!! TGTTTTTTTTTTTAGCATGG+AGG - chr3_3:34009883-34009902 Msa0449640:intron 25.0%
! TAAAATATAGGTGTTAACGT+AGG + chr3_3:34009935-34009954 None:intergenic 25.0%
!! ACGTCTTCGATTTAAAATAT+AGG + chr3_3:34009947-34009966 None:intergenic 25.0%
! TTAAGTGTAACAACATATGT+TGG + chr3_3:34010002-34010021 None:intergenic 25.0%
! TCGTGATGAAATAAATTATG+TGG + chr3_3:34010322-34010341 None:intergenic 25.0%
!! AAGATTATCCAACTAGTTTA+TGG + chr3_3:34010406-34010425 None:intergenic 25.0%
! ATAAACTAGTTGGATAATCT+TGG - chr3_3:34010405-34010424 Msa0449640:intron 25.0%
!! TTCTTTTGTCTGATGTATAA+AGG + chr3_3:34010481-34010500 None:intergenic 25.0%
! AAGTATAATAAAGAGGTTTG+AGG + chr3_3:34010591-34010610 None:intergenic 25.0%
! TGGTTACAAGTATAATAAAG+AGG + chr3_3:34010598-34010617 None:intergenic 25.0%
!!! TTTTTAAAACTCCCAAACAA+GGG + chr3_3:34010723-34010742 None:intergenic 25.0%
!!! TTTTTTAAAACTCCCAAACA+AGG + chr3_3:34010724-34010743 None:intergenic 25.0%
!! AAAAAAATAGGGAAAGGTTT+TGG - chr3_3:34010738-34010757 Msa0449640:intron 25.0%
!! AAAAAATAGGGAAAGGTTTT+GGG - chr3_3:34010739-34010758 Msa0449640:intron 25.0%
! TTAAAGAAACCAACAAAGAA+AGG + chr3_3:34010977-34010996 None:intergenic 25.0%
! TTTGAATGATGTCAAAAACT+AGG - chr3_3:34011209-34011228 Msa0449640:intron 25.0%
!! AACAAATCATCTTTTGTTCT+TGG + chr3_3:34011826-34011845 None:intergenic 25.0%
!!! AAAAGATGATTTGTTTGTGA+TGG - chr3_3:34011831-34011850 Msa0449640:intron 25.0%
! TGAAGTAAAATAGCTCAAAA+AGG - chr3_3:34012177-34012196 Msa0449640:intron 25.0%
!!! CTAACTAATTATTGACTCAT+CGG - chr3_3:34012263-34012282 Msa0449640:intron 25.0%
!!! ATTGTAATTTTGAGAATTGC+AGG - chr3_3:34012370-34012389 Msa0449640:intron 25.0%
!! CTCTTTTTATCACAATACAT+TGG + chr3_3:34013833-34013852 None:intergenic 25.0%
! TGGATCAATTGCTATTAGAA+AGG - chr3_3:34008155-34008174 Msa0449640:CDS 30.0%
! GGATCAATTGCTATTAGAAA+GGG - chr3_3:34008156-34008175 Msa0449640:CDS 30.0%
ATTAGAAAGGGATTCTATTC+TGG - chr3_3:34008168-34008187 Msa0449640:CDS 30.0%
TATCCTTTCTATTTCCAATC+TGG - chr3_3:34008625-34008644 Msa0449640:CDS 30.0%
CCTTTATAACTACCTCAATT+CGG + chr3_3:34009042-34009061 None:intergenic 30.0%
CGAATTGAGGTAGTTATAAA+GGG - chr3_3:34009040-34009059 Msa0449640:CDS 30.0%
TTCTTAACAATAAGAACCAC+TGG - chr3_3:34009127-34009146 Msa0449640:CDS 30.0%
!!! TCTGAATTTTGAAATTCCAG+TGG + chr3_3:34009146-34009165 None:intergenic 30.0%
CTGGAATTTCAAAATTCAGA+AGG - chr3_3:34009146-34009165 Msa0449640:CDS 30.0%
GTAGGACCATAAACTTAAAA+TGG - chr3_3:34009456-34009475 Msa0449640:CDS 30.0%
GCATTATGTTCTACTTCAAT+TGG + chr3_3:34009657-34009676 None:intergenic 30.0%
!! TGTGGTTGATGAAAAAACAT+TGG + chr3_3:34009693-34009712 None:intergenic 30.0%
ACTACGCTTCATTCAAAATA+AGG + chr3_3:34009818-34009837 None:intergenic 30.0%
CTGAGCATATCCTTAATTTA+TGG - chr3_3:34009853-34009872 Msa0449640:intron 30.0%
! TTAAGTGCTCGTTTTATCTA+AGG + chr3_3:34010102-34010121 None:intergenic 30.0%
! TTGATAGGAGCATGATTATT+TGG - chr3_3:34010203-34010222 Msa0449640:intron 30.0%
ATCATACAACTCAACATCAA+TGG + chr3_3:34010289-34010308 None:intergenic 30.0%
! TGTTGAGTTGTATGATCATT+TGG - chr3_3:34010293-34010312 Msa0449640:intron 30.0%
! TGTTTTCTCCATAAACTAGT+TGG - chr3_3:34010395-34010414 Msa0449640:intron 30.0%
TTTGTCTGATGTATAAAGGA+TGG + chr3_3:34010477-34010496 None:intergenic 30.0%
!! ATTTGAGGGAGCTTTAAAAT+TGG + chr3_3:34010788-34010807 None:intergenic 30.0%
!!! ATTTTAAAGCTCCCTCAAAT+TGG - chr3_3:34010788-34010807 Msa0449640:intron 30.0%
!!! TTTTAAAGCTCCCTCAAATT+GGG - chr3_3:34010789-34010808 Msa0449640:intron 30.0%
TTTCTTTAACTCCCAAACAA+GGG - chr3_3:34010988-34011007 Msa0449640:intron 30.0%
TCTTAGTGAATGAGATAGTT+AGG + chr3_3:34011106-34011125 None:intergenic 30.0%
! TTCAATAACTCTCAGTGTTT+TGG - chr3_3:34011250-34011269 Msa0449640:intron 30.0%
! TCAATAACTCTCAGTGTTTT+GGG - chr3_3:34011251-34011270 Msa0449640:intron 30.0%
!!! TTCTTTTTTTTCTTCTCCAC+AGG + chr3_3:34011454-34011473 None:intergenic 30.0%
!! ATATTTGATGGATTGAGTCT+TGG + chr3_3:34012129-34012148 None:intergenic 30.0%
ACATTATCATCAAGTCCAAA+GGG + chr3_3:34012307-34012326 None:intergenic 30.0%
AACATTATCATCAAGTCCAA+AGG + chr3_3:34012308-34012327 None:intergenic 30.0%
!! TGTTTCTGGTGATAATGTTT+CGG - chr3_3:34012324-34012343 Msa0449640:intron 30.0%
TAAGTGGAATAGACAAAATC+AGG + chr3_3:34012534-34012553 None:intergenic 30.0%
CTCAGATAAACAATGAATAG+AGG + chr3_3:34012583-34012602 None:intergenic 30.0%
TTTGCACAAGACAAATACAT+GGG - chr3_3:34012671-34012690 Msa0449640:intron 30.0%
! AAAGGATTTTCTCAGCAATA+TGG - chr3_3:34012804-34012823 Msa0449640:intron 30.0%
! ATTTTCTCAGCAATATGGTA+TGG - chr3_3:34012809-34012828 Msa0449640:intron 30.0%
TCAATGGCATATTTCTCAAA+TGG - chr3_3:34012905-34012924 Msa0449640:intron 30.0%
ACTTCAAGAGGAAGTTTATA+TGG - chr3_3:34012956-34012975 Msa0449640:intron 30.0%
!! ACGATTCTGCTTTGTTTATT+AGG - chr3_3:34013120-34013139 Msa0449640:intron 30.0%
! ATTACATGTGATGATGTTGA+TGG - chr3_3:34013194-34013213 Msa0449640:intron 30.0%
! TTACATGTGATGATGTTGAT+GGG - chr3_3:34013195-34013214 Msa0449640:intron 30.0%
ACTAAAGTACGATACAAAGT+GGG + chr3_3:34013398-34013417 None:intergenic 30.0%
AACTAAAGTACGATACAAAG+TGG + chr3_3:34013399-34013418 None:intergenic 30.0%
ACTTTGTATCGTACTTTAGT+TGG - chr3_3:34013398-34013417 Msa0449640:intron 30.0%
ATAAGCACATAACTCTAATG+AGG + chr3_3:34013588-34013607 None:intergenic 30.0%
TTATCACAATACATTGGAGT+TGG + chr3_3:34013827-34013846 None:intergenic 30.0%
CATCCAAATTTCTCATAACT+CGG - chr3_3:34013856-34013875 Msa0449640:CDS 30.0%
ACAGTCAATTTCAATGTGAT+TGG + chr3_3:34013897-34013916 None:intergenic 30.0%
CAAGAAACGAAAATGTTTGA+TGG + chr3_3:34014014-34014033 None:intergenic 30.0%
! ACTTCCCTCTTTTTGTAATC+TGG + chr3_3:34008244-34008263 None:intergenic 35.0%
GGAAAAAGACGAGAGATATA+GGG - chr3_3:34008545-34008564 Msa0449640:CDS 35.0%
GAAAAAGACGAGAGATATAG+GGG - chr3_3:34008546-34008565 Msa0449640:CDS 35.0%
CTTCCAGATTGGAAATAGAA+AGG + chr3_3:34008631-34008650 None:intergenic 35.0%
CTTTCTATTTCCAATCTGGA+AGG - chr3_3:34008629-34008648 Msa0449640:CDS 35.0%
AGAATTCCGAGTTAAGCAAA+TGG + chr3_3:34008694-34008713 None:intergenic 35.0%
AGACTTAGTACACAAGTGTT+GGG + chr3_3:34008767-34008786 None:intergenic 35.0%
TAGACTTAGTACACAAGTGT+TGG + chr3_3:34008768-34008787 None:intergenic 35.0%
! CTCTCAAGTTTGACAGTTTT+AGG - chr3_3:34008854-34008873 Msa0449640:CDS 35.0%
GAGAGAAAATGATAAACCCA+TGG - chr3_3:34008902-34008921 Msa0449640:CDS 35.0%
CCGAATTGAGGTAGTTATAA+AGG - chr3_3:34009039-34009058 Msa0449640:CDS 35.0%
TCATCTAATGCTTATGCAGA+AGG - chr3_3:34009346-34009365 Msa0449640:CDS 35.0%
CATCTAATGCTTATGCAGAA+GGG - chr3_3:34009347-34009366 Msa0449640:CDS 35.0%
GGTGAATATGAGAGAGTAAA+TGG + chr3_3:34009421-34009440 None:intergenic 35.0%
!! TCTGATATTTTAGGCTTCAC+TGG - chr3_3:34009561-34009580 Msa0449640:CDS 35.0%
! TCATAGTCGATTCTAAGTTC+TGG - chr3_3:34009746-34009765 Msa0449640:CDS 35.0%
! CTAAGTTCTGGTATTTCCTA+TGG - chr3_3:34009758-34009777 Msa0449640:CDS 35.0%
TAGGTGTTAACGTAGGTAAA+AGG + chr3_3:34009928-34009947 None:intergenic 35.0%
! TTTTAAATCGAAGACGTGTC+TGG - chr3_3:34009950-34009969 Msa0449640:intron 35.0%
TATCCTTTCAAATGGTCTGT+AGG + chr3_3:34010229-34010248 None:intergenic 35.0%
TACAGACCATTTGAAAGGAT+AGG - chr3_3:34010228-34010247 Msa0449640:intron 35.0%
TCACTTCCTATCCTTTCAAA+TGG + chr3_3:34010237-34010256 None:intergenic 35.0%
!! TAGGAAGTGATAGTGGAAAA+TGG - chr3_3:34010247-34010266 Msa0449640:intron 35.0%
AAAGCCAGTATACAAAAGCA+TGG - chr3_3:34010509-34010528 Msa0449640:intron 35.0%
! AAGCCAGTATACAAAAGCAT+GGG - chr3_3:34010510-34010529 Msa0449640:intron 35.0%
! TTTAAAGCTCCCTCAAATTG+GGG - chr3_3:34010790-34010809 Msa0449640:intron 35.0%
AAACCAACAAAGAAAGGAGA+TGG + chr3_3:34010971-34010990 None:intergenic 35.0%
GTTTCTTTAACTCCCAAACA+AGG - chr3_3:34010987-34011006 Msa0449640:intron 35.0%
TTCTTTAACTCCCAAACAAG+GGG - chr3_3:34010989-34011008 Msa0449640:intron 35.0%
!!! CTTTGTTTGCGAGTTTTGAA+GGG + chr3_3:34011083-34011102 None:intergenic 35.0%
AAAGAATGGTAAGGAATGAC+TGG - chr3_3:34011144-34011163 Msa0449640:intron 35.0%
!! ATCATTTTAACCTGTTCCTG+TGG - chr3_3:34011435-34011454 Msa0449640:intron 35.0%
!! GATGATTTGTTTGTGATGGT+TGG - chr3_3:34011835-34011854 Msa0449640:intron 35.0%
! TGGTTGGCTACTCTATTTAT+AGG - chr3_3:34011851-34011870 Msa0449640:intron 35.0%
AATGTTCCACAAGCAACTAT+GGG - chr3_3:34011912-34011931 Msa0449640:intron 35.0%
GGAGCAAAAATACGAAGATT+TGG + chr3_3:34012077-34012096 None:intergenic 35.0%
! GGACTTGATGATAATGTTTC+TGG - chr3_3:34012310-34012329 Msa0449640:intron 35.0%
! GGACTTGATGATAATGTTTC+TGG - chr3_3:34012310-34012329 Msa0449640:intron 35.0%
ATAGCCTCTTTATAGGAAGA+GGG + chr3_3:34012606-34012625 None:intergenic 35.0%
TATAGCCTCTTTATAGGAAG+AGG + chr3_3:34012607-34012626 None:intergenic 35.0%
GTCAAGTATAGCCTCTTTAT+AGG + chr3_3:34012613-34012632 None:intergenic 35.0%
CTTTGCACAAGACAAATACA+TGG - chr3_3:34012670-34012689 Msa0449640:intron 35.0%
GAGAAAATCCTTTAGCAACA+AGG + chr3_3:34012797-34012816 None:intergenic 35.0%
TCTAAATGGTGAACTTCAAG+AGG - chr3_3:34012944-34012963 Msa0449640:intron 35.0%
! TGAAGTGTGTAAGTTGAAGA+AGG - chr3_3:34013010-34013029 Msa0449640:intron 35.0%
AAGTTGAAGAAGGCTGTATA+TGG - chr3_3:34013020-34013039 Msa0449640:intron 35.0%
ACTACTGTGATTACATCTCT+TGG - chr3_3:34013080-34013099 Msa0449640:intron 35.0%
TTTATTAGGTCCACTTCTCA+TGG - chr3_3:34013134-34013153 Msa0449640:intron 35.0%
TAAAATACGACCATGAGAAG+TGG + chr3_3:34013147-34013166 None:intergenic 35.0%
AAGAATGTTGGCAATGTACT+TGG + chr3_3:34013339-34013358 None:intergenic 35.0%
TGAACGACATAAGCAATATC+AGG + chr3_3:34013452-34013471 None:intergenic 35.0%
TTCGCATTCTTCGTTATCTT+CGG - chr3_3:34013525-34013544 Msa0449640:intron 35.0%
! TGCTTATTCTGATGCTGATT+GGG - chr3_3:34013601-34013620 Msa0449640:intron 35.0%
AAGAAAGATACAAAACCCTG+TGG + chr3_3:34013654-34013673 None:intergenic 35.0%
! CGTTGGTTACTTTCTGATAT+GGG - chr3_3:34013785-34013804 Msa0449640:CDS 35.0%
CGAGTTATGAGAAATTTGGA+TGG + chr3_3:34013858-34013877 None:intergenic 35.0%
AGACCGAGTTATGAGAAATT+TGG + chr3_3:34013862-34013881 None:intergenic 35.0%
AGAAAGGGATTCTATTCTGG+AGG - chr3_3:34008171-34008190 Msa0449640:CDS 40.0%
TGCAGCCAGATTACAAAAAG+AGG - chr3_3:34008236-34008255 Msa0449640:CDS 40.0%
GCAGCCAGATTACAAAAAGA+GGG - chr3_3:34008237-34008256 Msa0449640:CDS 40.0%
AGGGAAGTTGAAGTTAGAGT+AGG - chr3_3:34008256-34008275 Msa0449640:CDS 40.0%
TAGAGTAGGTGTGTATTTGC+AGG - chr3_3:34008270-34008289 Msa0449640:CDS 40.0%
AGACTTCATCCTACAAGGTT+GGG + chr3_3:34008296-34008315 None:intergenic 40.0%
CAAATGAAAAGCTCGGTCAA+AGG - chr3_3:34008329-34008348 Msa0449640:CDS 40.0%
! AAGCTCGGTCAAAGGTTTTA+TGG - chr3_3:34008337-34008356 Msa0449640:CDS 40.0%
CGTGCAATATGAATGACTGA+AGG - chr3_3:34008458-34008477 Msa0449640:CDS 40.0%
GCAATATGAATGACTGAAGG+AGG - chr3_3:34008461-34008480 Msa0449640:CDS 40.0%
GGAGGAATAACAGAATTGAC+AGG - chr3_3:34008479-34008498 Msa0449640:CDS 40.0%
GGGAAAAAGACGAGAGATAT+AGG - chr3_3:34008544-34008563 Msa0449640:CDS 40.0%
AGAGCTGAGAATTGTGGTAT+CGG - chr3_3:34008589-34008608 Msa0449640:CDS 40.0%
ACTGGAATGGTAAAATGGTC+TGG + chr3_3:34008664-34008683 None:intergenic 40.0%
TTGCTTAACTCGGAATTCTC+AGG - chr3_3:34008695-34008714 Msa0449640:CDS 40.0%
TGCTTAACTCGGAATTCTCA+GGG - chr3_3:34008696-34008715 Msa0449640:CDS 40.0%
ACTCTTACGAGTAAGCTATG+TGG - chr3_3:34008809-34008828 Msa0449640:CDS 40.0%
CTCTACTCTCTAACAACCAT+GGG + chr3_3:34008921-34008940 None:intergenic 40.0%
TCTCTACTCTCTAACAACCA+TGG + chr3_3:34008922-34008941 None:intergenic 40.0%
GTTGTTAGAGAGTAGAGACT+AGG - chr3_3:34008924-34008943 Msa0449640:CDS 40.0%
CTGCACAATAACAGAATGCA+TGG - chr3_3:34008982-34009001 Msa0449640:CDS 40.0%
ATCACTCACCAATCCCAAAA+TGG + chr3_3:34009015-34009034 None:intergenic 40.0%
! TGAGAGAGTAAATGGACTTC+TGG + chr3_3:34009413-34009432 None:intergenic 40.0%
ATTCACCCTGAAGAACATTG+AGG - chr3_3:34009434-34009453 Msa0449640:CDS 40.0%
TCCTACCTCAATGTTCTTCA+GGG + chr3_3:34009442-34009461 None:intergenic 40.0%
TACTAATCAAGTCTCTCAGC+AGG - chr3_3:34009613-34009632 Msa0449640:CDS 40.0%
TTTCATCAACCACAACCTTG+AGG - chr3_3:34009699-34009718 Msa0449640:CDS 40.0%
TTCATCAACCACAACCTTGA+GGG - chr3_3:34009700-34009719 Msa0449640:CDS 40.0%
GAAAGGATAGGAAGTGATAG+TGG - chr3_3:34010240-34010259 Msa0449640:intron 40.0%
! CTTCCCATGCTTTTGTATAC+TGG + chr3_3:34010516-34010535 None:intergenic 40.0%
! CAGTATACAAAAGCATGGGA+AGG - chr3_3:34010514-34010533 Msa0449640:intron 40.0%
!! TTAAGGCTTTGTTTGCGAGT+TGG - chr3_3:34010650-34010669 Msa0449640:intron 40.0%
!! TAAGGCTTTGTTTGCGAGTT+GGG - chr3_3:34010651-34010670 Msa0449640:intron 40.0%
!! TTTGTTTGCGAGTTGGGTTT+TGG - chr3_3:34010657-34010676 Msa0449640:intron 40.0%
!!! AAATAGGGAAAGGTTTTGGG+AGG - chr3_3:34010742-34010761 Msa0449640:intron 40.0%
!!! AAGGTTTTGGGAGGTTTTGA+AGG - chr3_3:34010751-34010770 Msa0449640:intron 40.0%
!!! AGGTTTTGGGAGGTTTTGAA+GGG - chr3_3:34010752-34010771 Msa0449640:intron 40.0%
TTAAAGCTCCCTCAAATTGG+GGG - chr3_3:34010791-34010810 Msa0449640:intron 40.0%
CAACAAAGAAAGGAGATGGA+GGG + chr3_3:34010967-34010986 None:intergenic 40.0%
!!! GCTTTGTTTGCGAGTTTTGA+AGG + chr3_3:34011084-34011103 None:intergenic 40.0%
! TTTTTCTTCTCCACAGGAAC+AGG + chr3_3:34011448-34011467 None:intergenic 40.0%
TTCTCTTGTCTTGGGATTGT+TGG + chr3_3:34011703-34011722 None:intergenic 40.0%
GAGTAGACTTCTCTTGTCTT+GGG + chr3_3:34011711-34011730 None:intergenic 40.0%
TGAGTAGACTTCTCTTGTCT+TGG + chr3_3:34011712-34011731 None:intergenic 40.0%
GAATGTTCCACAAGCAACTA+TGG - chr3_3:34011911-34011930 Msa0449640:intron 40.0%
AAAAAGCCCATAGTTGCTTG+TGG + chr3_3:34011921-34011940 None:intergenic 40.0%
! ACAAGCAACTATGGGCTTTT+TGG - chr3_3:34011920-34011939 Msa0449640:intron 40.0%
TCCTAAGCAAAAGCAGCAAA+TGG - chr3_3:34011968-34011987 Msa0449640:intron 40.0%
TGAGTCTTGGAGCAAAAGAA+AGG + chr3_3:34012116-34012135 None:intergenic 40.0%
CTCACTCATATTGATCCCTT+TGG - chr3_3:34012289-34012308 Msa0449640:intron 40.0%
AACAATTGCAGGAGGTTGTT+GGG + chr3_3:34012448-34012467 None:intergenic 40.0%
TTGAGTAGACTTACGATGAC+AGG + chr3_3:34012508-34012527 None:intergenic 40.0%
AGCAAAAGAAGCAGAGTAAG+TGG + chr3_3:34012550-34012569 None:intergenic 40.0%
GAATTAGTACCTCTTCCTTC+AGG - chr3_3:34012693-34012712 Msa0449640:intron 40.0%
! CTTCAGGAAAACGTGCTATT+GGG - chr3_3:34012709-34012728 Msa0449640:intron 40.0%
AAAGCACACCTTGTTGCTAA+AGG - chr3_3:34012786-34012805 Msa0449640:CDS 40.0%
! TGAAGAAACTTTTGCTCCAG+TGG - chr3_3:34012836-34012855 Msa0449640:intron 40.0%
ATAGTAGTCATCTTAGCCAC+TGG + chr3_3:34012855-34012874 None:intergenic 40.0%
CAGTTGCATCTATTCGTCAA+TGG - chr3_3:34012889-34012908 Msa0449640:intron 40.0%
TGATTATGAGAAACACCTGG+TGG + chr3_3:34012987-34013006 None:intergenic 40.0%
ACCAGGTGTTTCTCATAATC+AGG - chr3_3:34012986-34013005 Msa0449640:intron 40.0%
CCAGGTGTTTCTCATAATCA+GGG - chr3_3:34012987-34013006 Msa0449640:intron 40.0%
ATCCTTCATCTCAAACTGCT+TGG + chr3_3:34013246-34013265 None:intergenic 40.0%
! CAGTTTGAGATGAAGGATCT+AGG - chr3_3:34013248-34013267 Msa0449640:intron 40.0%
! GAAGTTACCTACTCTAAGAG+AGG - chr3_3:34013296-34013315 Msa0449640:intron 40.0%
GTTGGCAATGTACTTGGATT+GGG + chr3_3:34013333-34013352 None:intergenic 40.0%
TGTTGGCAATGTACTTGGAT+TGG + chr3_3:34013334-34013353 None:intergenic 40.0%
GTGAGTCTGTTCAAGAATGT+TGG + chr3_3:34013351-34013370 None:intergenic 40.0%
TCGTACTTTAGTTGGCAGTT+TGG - chr3_3:34013406-34013425 Msa0449640:intron 40.0%
TATCAGGTCTGGTAATCGTA+AGG + chr3_3:34013436-34013455 None:intergenic 40.0%
GACATAAGCAATATCAGGTC+TGG + chr3_3:34013447-34013466 None:intergenic 40.0%
TCGCATTCTTCGTTATCTTC+GGG - chr3_3:34013526-34013545 Msa0449640:intron 40.0%
AACTCTAATGAGGACGATGA+TGG + chr3_3:34013578-34013597 None:intergenic 40.0%
GTGCTTATTCTGATGCTGAT+TGG - chr3_3:34013600-34013619 Msa0449640:intron 40.0%
! TATTCTGATGCTGATTGGGT+CGG - chr3_3:34013605-34013624 Msa0449640:intron 40.0%
AAAGATACAAAACCCTGTGG+TGG + chr3_3:34013651-34013670 None:intergenic 40.0%
CAACCAAACTATTTCAGTGG+TGG + chr3_3:34013765-34013784 None:intergenic 40.0%
ACGCAACCAAACTATTTCAG+TGG + chr3_3:34013768-34013787 None:intergenic 40.0%
CTGAAATAGTTTGGTTGCGT+TGG - chr3_3:34013768-34013787 Msa0449640:CDS 40.0%
!! GCGTTGGTTACTTTCTGATA+TGG - chr3_3:34013784-34013803 Msa0449640:CDS 40.0%
ACTCGTCATCATCTTCAAGA+TGG - chr3_3:34013923-34013942 Msa0449640:CDS 40.0%
GAACAAATCAGCAATCTGCA+AGG + chr3_3:34013978-34013997 None:intergenic 40.0%
GAGACTTCATCCTACAAGGT+TGG + chr3_3:34008297-34008316 None:intergenic 45.0%
GCAAGAGACTTCATCCTACA+AGG + chr3_3:34008301-34008320 None:intergenic 45.0%
AGCCGCTCAAATGAAAAGCT+CGG - chr3_3:34008322-34008341 Msa0449640:CDS 45.0%
! GACCGAGCTTTTCATTTGAG+CGG + chr3_3:34008327-34008346 None:intergenic 45.0%
! GTTTTATGGTCCGTATGCGT+GGG - chr3_3:34008351-34008370 Msa0449640:CDS 45.0%
! TTTTATGGTCCGTATGCGTG+GGG - chr3_3:34008352-34008371 Msa0449640:CDS 45.0%
CATTCTTGGGCCCATTCTAT+TGG + chr3_3:34008430-34008449 None:intergenic 45.0%
GCACGCAAGTTCACATTCTT+GGG + chr3_3:34008443-34008462 None:intergenic 45.0%
TGCACGCAAGTTCACATTCT+TGG + chr3_3:34008444-34008463 None:intergenic 45.0%
GAATTGACAGGTGACCATCA+TGG - chr3_3:34008491-34008510 Msa0449640:CDS 45.0%
!! GACCATCATGGATTGGACAA+AGG - chr3_3:34008503-34008522 Msa0449640:CDS 45.0%
CTCCTTTGTCCAATCCATGA+TGG + chr3_3:34008508-34008527 None:intergenic 45.0%
!! CATCATGGATTGGACAAAGG+AGG - chr3_3:34008506-34008525 Msa0449640:CDS 45.0%
!! GAATTGTGGTATCGGTCTCT+AGG - chr3_3:34008597-34008616 Msa0449640:CDS 45.0%
! TGGTAAAATGGTCTGGAGCT+AGG + chr3_3:34008657-34008676 None:intergenic 45.0%
AGGTGTGTGTGCACAAAAGA+AGG - chr3_3:34008874-34008893 Msa0449640:CDS 45.0%
GGTGTGTGTGCACAAAAGAA+GGG - chr3_3:34008875-34008894 Msa0449640:CDS 45.0%
GTGTGTGTGCACAAAAGAAG+GGG - chr3_3:34008876-34008895 Msa0449640:CDS 45.0%
GTTAGAGAGTAGAGACTAGG+AGG - chr3_3:34008927-34008946 Msa0449640:CDS 45.0%
!!! TGCATGGACAAGTGCCATTT+TGG - chr3_3:34008998-34009017 Msa0449640:CDS 45.0%
!!! GCATGGACAAGTGCCATTTT+GGG - chr3_3:34008999-34009018 Msa0449640:CDS 45.0%
!!! GACAAGTGCCATTTTGGGAT+TGG - chr3_3:34009004-34009023 Msa0449640:CDS 45.0%
! TGAGTGATGATGCCGAATTG+AGG - chr3_3:34009027-34009046 Msa0449640:CDS 45.0%
GATCAGTTCAGTGTTCTCAG+GGG + chr3_3:34009391-34009410 None:intergenic 45.0%
GGATCAGTTCAGTGTTCTCA+GGG + chr3_3:34009392-34009411 None:intergenic 45.0%
TGGATCAGTTCAGTGTTCTC+AGG + chr3_3:34009393-34009412 None:intergenic 45.0%
ACCCTGAAGAACATTGAGGT+AGG - chr3_3:34009438-34009457 Msa0449640:CDS 45.0%
GTCCTACCTCAATGTTCTTC+AGG + chr3_3:34009443-34009462 None:intergenic 45.0%
TCATCAACCACAACCTTGAG+GGG - chr3_3:34009701-34009720 Msa0449640:CDS 45.0%
! ATTACTGTTTTCCCCCCTCA+AGG + chr3_3:34009717-34009736 None:intergenic 45.0%
CGACACTGACATGTAGACAA+AGG + chr3_3:34010050-34010069 None:intergenic 45.0%
TGGCCTACAGACCATTTGAA+AGG - chr3_3:34010223-34010242 Msa0449640:intron 45.0%
!!! TTTGCGAGTTGGGTTTTGGA+GGG - chr3_3:34010661-34010680 Msa0449640:intron 45.0%
GGAAGGGAAGAAAAGGCTTA+TGG - chr3_3:34010688-34010707 Msa0449640:intron 45.0%
GGAAGAAAAGGCTTATGGAG+AGG - chr3_3:34010693-34010712 Msa0449640:intron 45.0%
TGGAGAGGTAAACCCTTGTT+TGG - chr3_3:34010708-34010727 Msa0449640:intron 45.0%
! GGAGAGGTAAACCCTTGTTT+GGG - chr3_3:34010709-34010728 Msa0449640:intron 45.0%
TAAAGCTCCCTCAAATTGGG+GGG - chr3_3:34010792-34010811 Msa0449640:intron 45.0%
CCAACAAAGAAAGGAGATGG+AGG + chr3_3:34010968-34010987 None:intergenic 45.0%
CCTCCATCTCCTTTCTTTGT+TGG - chr3_3:34010965-34010984 Msa0449640:intron 45.0%
! GGAAAGTCTTCCCCTTGTTT+GGG + chr3_3:34011002-34011021 None:intergenic 45.0%
GGGAATGAAAGGCTTAAGAG+GGG + chr3_3:34011058-34011077 None:intergenic 45.0%
GGGGAATGAAAGGCTTAAGA+GGG + chr3_3:34011059-34011078 None:intergenic 45.0%
AGGGGAATGAAAGGCTTAAG+AGG + chr3_3:34011060-34011079 None:intergenic 45.0%
TTTGAAGGGAGGGGAATGAA+AGG + chr3_3:34011069-34011088 None:intergenic 45.0%
!!! TTTGCGAGTTTTGAAGGGAG+GGG + chr3_3:34011078-34011097 None:intergenic 45.0%
!!! GTTTGCGAGTTTTGAAGGGA+GGG + chr3_3:34011079-34011098 None:intergenic 45.0%
!!! TGTTTGCGAGTTTTGAAGGG+AGG + chr3_3:34011080-34011099 None:intergenic 45.0%
! GAATGACTGGTTGATGTGAG+TGG - chr3_3:34011157-34011176 Msa0449640:intron 45.0%
!!! GCCATTTGCTGCTTTTGCTT+AGG + chr3_3:34011972-34011991 None:intergenic 45.0%
! AAAGGAGTCTGGAGCTGATT+CGG + chr3_3:34012098-34012117 None:intergenic 45.0%
TGGAGCAAAAGAAAGGAGTC+TGG + chr3_3:34012109-34012128 None:intergenic 45.0%
!! ACAAGAGGGGTGTCAATATC+TGG + chr3_3:34012414-34012433 None:intergenic 45.0%
CAACAATTGCAGGAGGTTGT+TGG + chr3_3:34012449-34012468 None:intergenic 45.0%
TCAGGATCAACAATTGCAGG+AGG + chr3_3:34012456-34012475 None:intergenic 45.0%
GGATCAGGATCAACAATTGC+AGG + chr3_3:34012459-34012478 None:intergenic 45.0%
ATAACGAGGAGGAGAAGAAG+GGG + chr3_3:34012481-34012500 None:intergenic 45.0%
GATAACGAGGAGGAGAAGAA+GGG + chr3_3:34012482-34012501 None:intergenic 45.0%
GTAGACTTACGATGACAGGA+TGG + chr3_3:34012504-34012523 None:intergenic 45.0%
TGAGCCCTCTTCCTATAAAG+AGG - chr3_3:34012599-34012618 Msa0449640:CDS 45.0%
AGGCTATACTTGACCCTCTT+TGG - chr3_3:34012619-34012638 Msa0449640:intron 45.0%
! CCAATAGCACGTTTTCCTGA+AGG + chr3_3:34012711-34012730 None:intergenic 45.0%
CCTTCAGGAAAACGTGCTAT+TGG - chr3_3:34012708-34012727 Msa0449640:intron 45.0%
GTTTATATGGAACCTCCACC+AGG - chr3_3:34012969-34012988 Msa0449640:intron 45.0%
TTATGAGAAACACCTGGTGG+AGG + chr3_3:34012984-34013003 None:intergenic 45.0%
CCCTGATTATGAGAAACACC+TGG + chr3_3:34012990-34013009 None:intergenic 45.0%
! AGCCAAGCAGTTTGAGATGA+AGG - chr3_3:34013241-34013260 Msa0449640:intron 45.0%
AGGTACTCTTCGCTACTTCT+TGG - chr3_3:34013268-34013287 Msa0449640:intron 45.0%
GGTACTCTTCGCTACTTCTT+GGG - chr3_3:34013269-34013288 Msa0449640:intron 45.0%
GTACTCTTCGCTACTTCTTG+GGG - chr3_3:34013270-34013289 Msa0449640:intron 45.0%
AAGGTAGCCTCTCTTAGAGT+AGG + chr3_3:34013306-34013325 None:intergenic 45.0%
! TGTACTTGGATTGGGAGAGA+AGG + chr3_3:34013325-34013344 None:intergenic 45.0%
TCTCTCCCACTACAGTACAT+TGG - chr3_3:34013492-34013511 Msa0449640:intron 45.0%
CTCTCCCACTACAGTACATT+GGG - chr3_3:34013493-34013512 Msa0449640:intron 45.0%
CGCATTCTTCGTTATCTTCG+GGG - chr3_3:34013527-34013546 Msa0449640:intron 45.0%
!! TGGTGGACTTACGATATGTC+GGG + chr3_3:34013634-34013653 None:intergenic 45.0%
!! GTGGTGGACTTACGATATGT+CGG + chr3_3:34013635-34013654 None:intergenic 45.0%
ACATATCGTAAGTCCACCAC+AGG - chr3_3:34013635-34013654 Msa0449640:intron 45.0%
CATATCGTAAGTCCACCACA+GGG - chr3_3:34013636-34013655 Msa0449640:intron 45.0%
CCAAACTATTTCAGTGGTGG+TGG + chr3_3:34013762-34013781 None:intergenic 45.0%
CCACCACCACTGAAATAGTT+TGG - chr3_3:34013759-34013778 Msa0449640:CDS 45.0%
CAAATCAGCAATCTGCAAGG+AGG + chr3_3:34013975-34013994 None:intergenic 45.0%
ATTTGCAGGCCCAACCTTGT+AGG - chr3_3:34008284-34008303 Msa0449640:CDS 50.0%
! GAGCTTTTCATTTGAGCGGC+TGG + chr3_3:34008323-34008342 None:intergenic 50.0%
!! GGTTTTATGGTCCGTATGCG+TGG - chr3_3:34008350-34008369 Msa0449640:CDS 50.0%
TTTATGGTCCGTATGCGTGG+GGG - chr3_3:34008353-34008372 Msa0449640:CDS 50.0%
AGAGGAGTGGGCCAATAGAA+TGG - chr3_3:34008416-34008435 Msa0449640:CDS 50.0%
GAGGAGTGGGCCAATAGAAT+GGG - chr3_3:34008417-34008436 Msa0449640:CDS 50.0%
GACAGGTGACCATCATGGAT+TGG - chr3_3:34008496-34008515 Msa0449640:CDS 50.0%
! TGGATTGGACAAAGGAGGTG+TGG - chr3_3:34008511-34008530 Msa0449640:CDS 50.0%
! GGATTGGACAAAGGAGGTGT+GGG - chr3_3:34008512-34008531 Msa0449640:CDS 50.0%
! AGGAGGTGTGGGAGTCATAA+TGG - chr3_3:34008523-34008542 Msa0449640:CDS 50.0%
! GGAGGTGTGGGAGTCATAAT+GGG - chr3_3:34008524-34008543 Msa0449640:CDS 50.0%
GTGGGTAGAGCTGAGAATTG+TGG - chr3_3:34008583-34008602 Msa0449640:CDS 50.0%
GTGTGCACAAAAGAAGGGGA+TGG - chr3_3:34008880-34008899 Msa0449640:CDS 50.0%
CATCAACCACAACCTTGAGG+GGG - chr3_3:34009702-34009721 Msa0449640:CDS 50.0%
ATCAACCACAACCTTGAGGG+GGG - chr3_3:34009703-34009722 Msa0449640:CDS 50.0%
CGGCAGAATGCAAGAACCAT+AGG + chr3_3:34009777-34009796 None:intergenic 50.0%
CATGTCAGTGTCGTACTGCT+TGG - chr3_3:34010057-34010076 Msa0449640:intron 50.0%
!! GTTTGCGAGTTGGGTTTTGG+AGG - chr3_3:34010660-34010679 Msa0449640:intron 50.0%
!!! TTGCGAGTTGGGTTTTGGAG+GGG - chr3_3:34010662-34010681 Msa0449640:intron 50.0%
!!! AGTTGGGTTTTGGAGGGGAA+GGG - chr3_3:34010667-34010686 Msa0449640:intron 50.0%
! TCCCTCAAATTGGGGGGTTT+TGG - chr3_3:34010798-34010817 Msa0449640:intron 50.0%
CCCAAAACCCCCCAATTTGA+GGG + chr3_3:34010802-34010821 None:intergenic 50.0%
! CCCTCAAATTGGGGGGTTTT+GGG - chr3_3:34010799-34010818 Msa0449640:intron 50.0%
! CCTCAAATTGGGGGGTTTTG+GGG - chr3_3:34010800-34010819 Msa0449640:intron 50.0%
!! CTCAAATTGGGGGGTTTTGG+GGG - chr3_3:34010801-34010820 Msa0449640:intron 50.0%
!!! TCAAATTGGGGGGTTTTGGG+GGG - chr3_3:34010802-34010821 Msa0449640:intron 50.0%
GGGAAAGTCTTCCCCTTGTT+TGG + chr3_3:34011003-34011022 None:intergenic 50.0%
AGAGAAGGGAAGGAAGGGAA+GGG + chr3_3:34011034-34011053 None:intergenic 50.0%
AAGAGAAGGGAAGGAAGGGA+AGG + chr3_3:34011035-34011054 None:intergenic 50.0%
TAAGAGGGGAAGAGAAGGGA+AGG + chr3_3:34011044-34011063 None:intergenic 50.0%
GGCTTAAGAGGGGAAGAGAA+GGG + chr3_3:34011048-34011067 None:intergenic 50.0%
AGGCTTAAGAGGGGAAGAGA+AGG + chr3_3:34011049-34011068 None:intergenic 50.0%
TGTGAGTGGCGTCTATCCTA+AGG - chr3_3:34011171-34011190 Msa0449640:intron 50.0%
AAAGCAGCAAATGGCACTCC+TGG - chr3_3:34011977-34011996 Msa0449640:intron 50.0%
CCAAAGTCAGAAGCTTGGCA+CGG + chr3_3:34012036-34012055 None:intergenic 50.0%
CGTGCCAAGCTTCTGACTTT+GGG - chr3_3:34012034-34012053 Msa0449640:intron 50.0%
GTGCCAAGCTTCTGACTTTG+GGG - chr3_3:34012035-34012054 Msa0449640:intron 50.0%
TCTCCCCAAAGTCAGAAGCT+TGG + chr3_3:34012041-34012060 None:intergenic 50.0%
TAACGAGGAGGAGAAGAAGG+GGG + chr3_3:34012480-34012499 None:intergenic 50.0%
GGATAACGAGGAGGAGAAGA+AGG + chr3_3:34012483-34012502 None:intergenic 50.0%
TGACAGGATGGATAACGAGG+AGG + chr3_3:34012492-34012511 None:intergenic 50.0%
CGATGACAGGATGGATAACG+AGG + chr3_3:34012495-34012514 None:intergenic 50.0%
ACTTGACCCTCTTTGGCAAC+AGG - chr3_3:34012626-34012645 Msa0449640:intron 50.0%
CCATAGCCTGTTGCCAAAGA+GGG + chr3_3:34012635-34012654 None:intergenic 50.0%
ACCATAGCCTGTTGCCAAAG+AGG + chr3_3:34012636-34012655 None:intergenic 50.0%
! GCACGTTTTCCTGAAGGAAG+AGG + chr3_3:34012705-34012724 None:intergenic 50.0%
! AACGTGCTATTGGGTCTCGT+TGG - chr3_3:34012718-34012737 Msa0449640:intron 50.0%
! ACGTGCTATTGGGTCTCGTT+GGG - chr3_3:34012719-34012738 Msa0449640:intron 50.0%
TGAAACAAGCTCTGCGAGCA+TGG - chr3_3:34013045-34013064 Msa0449640:intron 50.0%
GCTGCCCAATGTACTGTAGT+GGG + chr3_3:34013500-34013519 None:intergenic 50.0%
AGCTGCCCAATGTACTGTAG+TGG + chr3_3:34013501-34013520 None:intergenic 50.0%
! AGAAGCTGAGTACCGTGCTA+TGG - chr3_3:34013733-34013752 Msa0449640:CDS 50.0%
GAGCTAGGCTCCTTCCAGAT+TGG + chr3_3:34008642-34008661 None:intergenic 55.0%
! GTTTTCCCCCCTCAAGGTTG+TGG + chr3_3:34009711-34009730 None:intergenic 55.0%
GTCTGGTGTCTGACATGTGC+TGG - chr3_3:34009967-34009986 Msa0449640:intron 55.0%
!!! GAGTTGGGTTTTGGAGGGGA+AGG - chr3_3:34010666-34010685 Msa0449640:intron 55.0%
!!! GGTTTTGGAGGGGAAGGGAA+GGG - chr3_3:34010672-34010691 Msa0449640:intron 55.0%
GGGGAAGGGAAGGGAAGAAA+AGG - chr3_3:34010681-34010700 Msa0449640:intron 55.0%
CCCCAAAACCCCCCAATTTG+AGG + chr3_3:34010803-34010822 None:intergenic 55.0%
GGAAGGGAAGGGAGAAAGGA+GGG + chr3_3:34011023-34011042 None:intergenic 55.0%
AGGAAGGGAAGGGAGAAAGG+AGG + chr3_3:34011024-34011043 None:intergenic 55.0%
GGAAGGAAGGGAAGGGAGAA+AGG + chr3_3:34011027-34011046 None:intergenic 55.0%
GGGGAAGAGAAGGGAAGGAA+GGG + chr3_3:34011039-34011058 None:intergenic 55.0%
AGGGGAAGAGAAGGGAAGGA+AGG + chr3_3:34011040-34011059 None:intergenic 55.0%
CAGCAAATGGCACTCCTGGA+GGG - chr3_3:34011981-34012000 Msa0449640:intron 55.0%
CCGTGCCAAGCTTCTGACTT+TGG - chr3_3:34012033-34012052 Msa0449640:intron 55.0%
GAGGTTGTTGGGCAACCAAG+GGG + chr3_3:34012437-34012456 None:intergenic 55.0%
GGAGGTTGTTGGGCAACCAA+GGG + chr3_3:34012438-34012457 None:intergenic 55.0%
AGGAGGTTGTTGGGCAACCA+AGG + chr3_3:34012439-34012458 None:intergenic 55.0%
CCCTCTTTGGCAACAGGCTA+TGG - chr3_3:34012632-34012651 Msa0449640:intron 55.0%
TGCAAGGAGGACGAGACGAA+CGG + chr3_3:34013962-34013981 None:intergenic 55.0%
TGGCCGTATGCGTGGGAGAA+GGG - chr3_3:34008385-34008404 Msa0449640:CDS 60.0%
CACCCCTTCTCCCACGCATA+CGG + chr3_3:34008391-34008410 None:intergenic 60.0%
!!! GGGTTTTGGAGGGGAAGGGA+AGG - chr3_3:34010671-34010690 Msa0449640:intron 60.0%
GCAGCAAATGGCACTCCTGG+AGG - chr3_3:34011980-34011999 Msa0449640:intron 60.0%
CAAATGGCACTCCTGGAGGG+TGG - chr3_3:34011984-34012003 Msa0449640:intron 60.0%
TGACACCCCTCTTGTCCCCT+TGG - chr3_3:34012419-34012438 Msa0449640:intron 60.0%
GGCAACCAAGGGGACAAGAG+GGG + chr3_3:34012427-34012446 None:intergenic 60.0%
GGGCAACCAAGGGGACAAGA+GGG + chr3_3:34012428-34012447 None:intergenic 60.0%
TGGGCAACCAAGGGGACAAG+AGG + chr3_3:34012429-34012448 None:intergenic 60.0%
GGAGGAGAAGAAGGGGGATC+AGG + chr3_3:34012474-34012493 None:intergenic 60.0%
!! TGGTGGTGGACGCCATAGCA+CGG + chr3_3:34013748-34013767 None:intergenic 60.0%
TGGTCCGTATGCGTGGGGGA+AGG - chr3_3:34008357-34008376 Msa0449640:CDS 65.0%
GGTCCGTATGCGTGGGGGAA+GGG - chr3_3:34008358-34008377 Msa0449640:CDS 65.0%
GTCCGTATGCGTGGGGGAAG+GGG - chr3_3:34008359-34008378 Msa0449640:CDS 65.0%
CACCCCTTCCCCCACGCATA+CGG + chr3_3:34008364-34008383 None:intergenic 65.0%
CTGGCCGTATGCGTGGGAGA+AGG - chr3_3:34008384-34008403 Msa0449640:CDS 65.0%
GGCCGTATGCGTGGGAGAAG+GGG - chr3_3:34008386-34008405 Msa0449640:CDS 65.0%
! ATGCGTGGGAGAAGGGGTGC+TGG - chr3_3:34008392-34008411 Msa0449640:CDS 65.0%
!! TGCGTGGGAGAAGGGGTGCT+GGG - chr3_3:34008393-34008412 Msa0449640:CDS 65.0%
!! AAGGGGTGCTGGGAGAGGAG+TGG - chr3_3:34008403-34008422 Msa0449640:CDS 65.0%
!! AGGGGTGCTGGGAGAGGAGT+GGG - chr3_3:34008404-34008423 Msa0449640:CDS 65.0%
CGGCCGTGCCAACCTTAGCA+CGG - chr3_3:34012009-34012028 Msa0449640:intron 65.0%
GGCCGTGCCAACCTTAGCAC+GGG - chr3_3:34012010-34012029 Msa0449640:intron 65.0%
GGCCCGTGCTAAGGTTGGCA+CGG + chr3_3:34012015-34012034 None:intergenic 65.0%
! ATGCGTGGGGGAAGGGGTGC+TGG - chr3_3:34008365-34008384 Msa0449640:CDS 70.0%
!! AGGGGTGCTGGCCGTATGCG+TGG - chr3_3:34008377-34008396 Msa0449640:CDS 70.0%
!! GGGGTGCTGGCCGTATGCGT+GGG - chr3_3:34008378-34008397 Msa0449640:CDS 70.0%
!! GGGAGAAGGGGTGCTGGGAG+AGG - chr3_3:34008398-34008417 Msa0449640:CDS 70.0%
GGCACTCCTGGAGGGTGGCA+CGG - chr3_3:34011989-34012008 Msa0449640:intron 70.0%
GGCACGGCCCGTGCTAAGGT+TGG + chr3_3:34012020-34012039 None:intergenic 70.0%
GCTTGGCACGGCCCGTGCTA+AGG + chr3_3:34012024-34012043 None:intergenic 70.0%
! GCACGGCCGTGCCACCCTCC+AGG + chr3_3:34011998-34012017 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 34008115 34014072 34008115 ID=Msa0449640;Name=Msa0449640
chr3_3 mRNA 34008115 34014072 34008115 ID=Msa0449640-mRNA-1;Parent=Msa0449640;Name=Msa0449640-mRNA-1;_AED=0.92;_eAED=0.92;_QI=0|0.33|0.25|0.75|1|1|4|0|732
chr3_3 exon 34013729 34014072 34013729 ID=Msa0449640-mRNA-1:exon:6085;Parent=Msa0449640-mRNA-1
chr3_3 exon 34012732 34012822 34012732 ID=Msa0449640-mRNA-1:exon:6084;Parent=Msa0449640-mRNA-1
chr3_3 exon 34012553 34012635 34012553 ID=Msa0449640-mRNA-1:exon:6083;Parent=Msa0449640-mRNA-1
chr3_3 exon 34008115 34009795 34008115 ID=Msa0449640-mRNA-1:exon:6082;Parent=Msa0449640-mRNA-1
chr3_3 CDS 34013729 34014072 34013729 ID=Msa0449640-mRNA-1:cds;Parent=Msa0449640-mRNA-1
chr3_3 CDS 34012732 34012822 34012732 ID=Msa0449640-mRNA-1:cds;Parent=Msa0449640-mRNA-1
chr3_3 CDS 34012553 34012635 34012553 ID=Msa0449640-mRNA-1:cds;Parent=Msa0449640-mRNA-1
chr3_3 CDS 34008115 34009795 34008115 ID=Msa0449640-mRNA-1:cds;Parent=Msa0449640-mRNA-1
Gene Sequence

>Msa0449640

ATGATCAAGTATAAACACGAAAGTATAAATGTGCAATATGTGGATCAATTGCTATTAGAAAGGGATTCTATTCTGGAGGAGCTGAAGTACAATTTATGTAGAGCTCAAAATAAGAAGAAAGTGCAGCCAGATTACAAAAAGAGGGAAGTTGAAGTTAGAGTAGGTGTGTATTTGCAGGCCCAACCTTGTAGGATGAAGTCTCTTGCCAGCCGCTCAAATGAAAAGCTCGGTCAAAGGTTTTATGGTCCGTATGCGTGGGGGAAGGGGTGCTGGCCGTATGCGTGGGAGAAGGGGTGCTGGGAGAGGAGTGGGCCAATAGAATGGGCCCAAGAATGTGAACTTGCAAGGGTACATTCATCAATTTTGACCCCTGAGAACACTGAACTGATCCAGAAGTCCATTTACTCTCTCATATTCACCCTGAAGAACATTGAGAATGTTAGCTCTGATATTTTAGGCTTCACTGGTGATGAAGCTACAAGAAAGAATTTGAAGTTACTAATCAAGTCTCTCAGCAGGACTGATACTACTTCTACTCCAGATATTGACACCCCTCTTGTCCCCTTGGTTGCCCAACAACCTCCTGCAATTGTTGATCCTGATCCCCCTTCTTCTCCTCCTCGTTATCCATCCTGTCATCGTAAGTCTACTCAATTGCCTGATTTTGTCTATTCCACTTACTCTGCTTCTTTTGCTTCTTTTCTAACCTCTATTCATTGTTTATCTGAGCCCTCTTCCTATAAAGAGGCTATACTTGACCCTCTTTGGCAACAGGCTATGGTAGAAGAACTTTCTGCTTTGCACAAGACAAATACATGGGAATTAGTACCTCTTCCTTCAGGAAAACGTGCTATTGGGTCTCGTTGGGTATGCAAAATCAAAACTAAGTTTGATGGGTCAGTTGAGCGCTACAAAGCACACCTTGTTGCTAAAGGATTTTCTCAGCAATATGGTATGGATTATGAAGAAACTTTTGCTCCAGTGGCTAAGATGACTACTATTCGCACTCTTATTGCAGTTGCATCTATTCGTCAATGGCATATTTCTCAAATGGATGTTAAAAATGCATTTCTAAATGGTGAACTTCAAGAGGAAGTTTATATGGAACCTCCACCAGGTGTTTCTCATAATCAGGGTGAAGTGTGTAAGTTGAAGAAGGCTGTATATGGTTTGAAACAAGCTCTGCGAGCATGGTTTGAGAAGTTTACTACTGTGATTACATCTCTTGGCTTCTGCTCTAGTGATCACGATTCTGCTTTGTTTATTAGGTCCACTTCTCATGGTCGTATTTTACTCTCATTATATGTTGATGATATGATTATTACATGTGATGATGTTGATGGGATTGATGATTTGAAACTACAATTAGCCAAGCAGTTTGAGATGAAGGATCTAGGTACTCTTCGCTACTTCTTGGGGATTGAAGTTACCTACTCTAAGAGAGGCTACCTTCTCTCCCAATCCAAGTACATTGCCAACATTCTTGAACAGACTCACATTTTTGATACTAGAGTAGTAGATCCCACTTTGTATCGTACTTTAGTTGGCAGTTTGGTGTACCTTACGATTACCAGACCTGATATTGCTTATGTCGTTCATGTTGTCAGTCAATTTGTTGTCTCTCCCACTACAGTACATTGGGCAGCTGTTCTTCGCATTCTTCGTTATCTTCGGGGAACACAATTTCAGAGTATTCTATTGCCATCATCGTCCTCATTAGAGTTATGTGCTTATTCTGATGCTGATTGGGTCGGCGACCCGACATATCGTAAGTCCACCACAGGGTTTTGTATCTTTCTTAGAGATTCTTTTATTTCTTGGAAGAGTAAGAAACAAGATATTGTATCACATTCTTCTACAGAAGCTGAGTACCGTGCTATGGCGTCCACCACCACTGAAATAGTTTGGTTGCGTTGGTTACTTTCTGATATGGGTGTCACTCTTTCTAAGCCAACTCCAATGTATTGTGATAAAAAGAGTGCCATCCAAATTTCTCATAACTCGGTCTTTCATGAACGCACCAATCACATTGAAATTGACTGTCACTTCACTCGTCATCATCTTCAAGATGGAACGATTACTCTACCGTTCGTCTCGTCCTCCTTGCAGATTGCTGATTTGTTCACAAAGACGCATTCCATCAAACATTTTCGTTTCTTGATTGACAAACTCTTGATGCTTCCTATTAATGCGTCATGA
Protein sequence

>Msa0449640

MIKYKHESINVQYVDQLLLERDSILEELKYNLCRAQNKKKVQPDYKKREVEVRVGVYLQAQPCRMKSLASRSNEKLGQRFYGPYAWGKGCWPYAWEKGCWERSGPIEWAQECELARVHSSILTPENTELIQKSIYSLIFTLKNIENVSSDILGFTGDEATRKNLKLLIKSLSRTDTTSTPDIDTPLVPLVAQQPPAIVDPDPPSSPPRYPSCHRKSTQLPDFVYSTYSASFASFLTSIHCLSEPSSYKEAILDPLWQQAMVEELSALHKTNTWELVPLPSGKRAIGSRWVCKIKTKFDGSVERYKAHLVAKGFSQQYGMDYEETFAPVAKMTTIRTLIAVASIRQWHISQMDVKNAFLNGELQEEVYMEPPPGVSHNQGEVCKLKKAVYGLKQALRAWFEKFTTVITSLGFCSSDHDSALFIRSTSHGRILLSLYVDDMIITCDDVDGIDDLKLQLAKQFEMKDLGTLRYFLGIEVTYSKRGYLLSQSKYIANILEQTHIFDTRVVDPTLYRTLVGSLVYLTITRPDIAYVVHVVSQFVVSPTTVHWAAVLRILRYLRGTQFQSILLPSSSSLELCAYSDADWVGDPTYRKSTTGFCIFLRDSFISWKSKKQDIVSHSSTEAEYRAMASTTTEIVWLRWLLSDMGVTLSKPTPMYCDKKSAIQISHNSVFHERTNHIEIDCHFTRHHLQDGTITLPFVSSSLQIADLFTKTHSIKHFRFLIDKLLMLPINAS*