AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369920 MtrunA17_Chr4g0057901 95.192 104 5 0 2 105 127 230 1.16e-72 215
Msa1369920 MtrunA17_Chr8g0335791 61.538 104 39 1 2 105 47 149 1.14e-42 136
Msa1369920 MtrunA17_Chr8g0388131 55.882 102 45 0 2 103 129 230 2.51e-37 125
Msa1369920 MtrunA17_Chr8g0344421 38.462 91 53 1 2 89 78 168 2.58e-18 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369920 AT5G63310.1 80.769 104 20 0 2 105 128 231 4.51e-59 181
Msa1369920 AT4G09320.1 60.577 104 40 1 2 105 46 148 1.99e-43 139
Msa1369920 AT4G11010.1 57.843 102 43 0 2 103 133 234 3.20e-39 130
Msa1369920 AT4G23900.1 56.863 102 44 0 2 103 132 233 3.93e-38 128
Msa1369920 AT4G23895.3 56.863 102 44 0 2 103 362 463 4.31e-36 127
Msa1369920 AT1G17410.2 40.909 88 49 1 5 89 43 130 4.98e-17 71.6
Msa1369920 AT1G17410.1 40.909 88 49 1 5 89 80 167 1.25e-16 71.6

Find 36 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGGGCCCCGTTGTGTCTA+TGG 0.249639 tig0018912:-208138 Msa1369920:intron
CCATCAGCACGTAAGCTTAT+AGG 0.269590 tig0018912:-208005 Msa1369920:CDS
GGAAGAAAGACTTCTGATTT+AGG 0.280449 tig0018912:+208183 None:intergenic
TTCCATTTGCTGCAGCTCTA+TGG 0.293061 tig0018912:-206748 Msa1369920:intron
GAAAATGGCGAGCGTGAAAT+AGG 0.318990 tig0018912:-207755 Msa1369920:intron
GGCAGTGACAGCCCTGAAAA+TGG 0.334968 tig0018912:-207770 Msa1369920:CDS
TGTTTGAACATTGAGCTTAA+AGG 0.360026 tig0018912:+206580 None:intergenic
GGAGACTTTGCTGTTGAAAC+AGG 0.369768 tig0018912:-207942 Msa1369920:CDS
CTGATTGACTATATTACTTC+GGG 0.369900 tig0018912:-208155 Msa1369920:CDS
TCGTTGTCATTGCGCATCTC+TGG 0.401325 tig0018912:+206661 None:intergenic
GTAATATAGTCAATCAGCTT+AGG 0.409337 tig0018912:+208161 None:intergenic
TTTGGCAGGAATATTATTCA+TGG 0.411414 tig0018912:-207791 Msa1369920:intron
TGCTGCAGCTCTATGGTTCA+AGG 0.433624 tig0018912:-206741 Msa1369920:intron
GCAGAACCAGGCACAATAAG+AGG 0.440871 tig0018912:-207963 Msa1369920:CDS
GTTTATTATTCTCTTAGCCA+TGG 0.442524 tig0018912:+206683 None:intergenic
AAGTCTCCTCTTATTGTGCC+TGG 0.451702 tig0018912:+207957 None:intergenic
TGCAAGGCTTGGGAGGGTGT+TGG 0.459104 tig0018912:-208035 Msa1369920:intron
AGTTATACCATAGACACAAC+GGG 0.464995 tig0018912:+208131 None:intergenic
GCTGATTGACTATATTACTT+CGG 0.470279 tig0018912:-208156 Msa1369920:CDS
TAATATAGTCAATCAGCTTA+GGG 0.480624 tig0018912:+208162 None:intergenic
TTATGTTTGCAAGGCTTGGG+AGG 0.497838 tig0018912:-208042 Msa1369920:intron
ATTCTCTTAGCCATGGATGT+AGG 0.509659 tig0018912:+206690 None:intergenic
CTTAGCCATGGATGTAGGAC+AGG 0.510478 tig0018912:+206695 None:intergenic
ATGGTTTCAGGAGCATTACA+AGG 0.519469 tig0018912:-208207 None:intergenic
CCTATAAGCTTACGTGCTGA+TGG 0.530791 tig0018912:+208005 None:intergenic
TATGTTTGCAAGGCTTGGGA+GGG 0.532452 tig0018912:-208041 Msa1369920:intron
AGGAAGGCGAATTATGTGAA+TGG 0.560837 tig0018912:-206721 Msa1369920:CDS
GTGCCTGGTTCTGCTTGCAG+AGG 0.569047 tig0018912:+207972 None:intergenic
TTGAACATTGAGCTTAAAGG+AGG 0.578002 tig0018912:+206583 None:intergenic
AATCCTCTGCAAGCAGAACC+AGG 0.581765 tig0018912:-207975 Msa1369920:CDS
GGACTCCTGTCCTACATCCA+TGG 0.592922 tig0018912:-206700 Msa1369920:CDS
TGAACATTGAGCTTAAAGGA+GGG 0.627540 tig0018912:+206584 None:intergenic
ACTTTGCTGTTGAAACAGGA+AGG 0.628376 tig0018912:-207938 Msa1369920:intron
GCAGCTCTATGGTTCAAGGA+AGG 0.644056 tig0018912:-206737 Msa1369920:intron
GAGTTATACCATAGACACAA+CGG 0.655073 tig0018912:+208130 None:intergenic
GTTATACCATAGACACAACG+GGG 0.788135 tig0018912:+208132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATGCTAAAATAAAAAAA+AGG + tig0018912:207352-207371 None:intergenic 15.0%
!! CAAATGCTAAAATAAAAAAA+AGG + tig0018912:207352-207371 None:intergenic 15.0%
!! CCTGCTAATATATAAATTAA+CGG + tig0018912:207104-207123 None:intergenic 20.0%
!! TTGAATTATGTATTGAATAC+AGG - tig0018912:207609-207628 Msa1369920:intron 20.0%
!! AAGAAAAATATAAGTTGCAA+AGG - tig0018912:207804-207823 Msa1369920:intron 20.0%
!! AGAAAAATATAAGTTGCAAA+GGG - tig0018912:207805-207824 Msa1369920:intron 20.0%
!! AACTAAATATCGACAAAATA+AGG + tig0018912:207885-207904 None:intergenic 20.0%
!!! TTTTGTCGATATTTAGTTAT+AGG - tig0018912:207887-207906 Msa1369920:intron 20.0%
!! CCTGCTAATATATAAATTAA+CGG + tig0018912:207104-207123 None:intergenic 20.0%
!! TTGAATTATGTATTGAATAC+AGG - tig0018912:207609-207628 Msa1369920:intron 20.0%
!! AAGAAAAATATAAGTTGCAA+AGG - tig0018912:207804-207823 Msa1369920:intron 20.0%
!! AGAAAAATATAAGTTGCAAA+GGG - tig0018912:207805-207824 Msa1369920:intron 20.0%
!! AACTAAATATCGACAAAATA+AGG + tig0018912:207885-207904 None:intergenic 20.0%
!!! TTTTGTCGATATTTAGTTAT+AGG - tig0018912:207887-207906 Msa1369920:intron 20.0%
! TAATATAGTCAATCAGCTTA+GGG + tig0018912:206586-206605 None:intergenic 25.0%
! AGAATCAAGATAAGATTCAT+AGG - tig0018912:206876-206895 Msa1369920:intron 25.0%
! GAATCAAGATAAGATTCATA+GGG - tig0018912:206877-206896 Msa1369920:intron 25.0%
! CCGTTAATTTATATATTAGC+AGG - tig0018912:207101-207120 Msa1369920:intron 25.0%
! TTATAAACTTATGCTGAAGA+GGG + tig0018912:207434-207453 None:intergenic 25.0%
! TTTATAAACTTATGCTGAAG+AGG + tig0018912:207435-207454 None:intergenic 25.0%
! GAAAAATATAAGTTGCAAAG+GGG - tig0018912:207806-207825 Msa1369920:intron 25.0%
! AAAAATATAAGTTGCAAAGG+GGG - tig0018912:207807-207826 Msa1369920:intron 25.0%
! TTAAAGAATCACAGTATTAC+AGG + tig0018912:207964-207983 None:intergenic 25.0%
! TAATATAGTCAATCAGCTTA+GGG + tig0018912:206586-206605 None:intergenic 25.0%
! AGAATCAAGATAAGATTCAT+AGG - tig0018912:206876-206895 Msa1369920:intron 25.0%
! GAATCAAGATAAGATTCATA+GGG - tig0018912:206877-206896 Msa1369920:intron 25.0%
! CCGTTAATTTATATATTAGC+AGG - tig0018912:207101-207120 Msa1369920:intron 25.0%
! TTATAAACTTATGCTGAAGA+GGG + tig0018912:207434-207453 None:intergenic 25.0%
! TTTATAAACTTATGCTGAAG+AGG + tig0018912:207435-207454 None:intergenic 25.0%
! GAAAAATATAAGTTGCAAAG+GGG - tig0018912:207806-207825 Msa1369920:intron 25.0%
! AAAAATATAAGTTGCAAAGG+GGG - tig0018912:207807-207826 Msa1369920:intron 25.0%
! TTAAAGAATCACAGTATTAC+AGG + tig0018912:207964-207983 None:intergenic 25.0%
GTAATATAGTCAATCAGCTT+AGG + tig0018912:206587-206606 None:intergenic 30.0%
GCTGATTGACTATATTACTT+CGG - tig0018912:206589-206608 Msa1369920:three_prime_UTR 30.0%
CTGATTGACTATATTACTTC+GGG - tig0018912:206590-206609 Msa1369920:three_prime_UTR 30.0%
!!! TTTCTGGTTTTATGTTTGCA+AGG - tig0018912:206694-206713 Msa1369920:CDS 30.0%
CTTATCTTGATTCTTGACTA+AGG + tig0018912:206870-206889 None:intergenic 30.0%
! AAGATCTTGTGATGAACTTT+TGG - tig0018912:206936-206955 Msa1369920:intron 30.0%
TTTGGCAGGAATATTATTCA+TGG - tig0018912:206954-206973 Msa1369920:intron 30.0%
CTGAATCATGATACTATAAG+AGG + tig0018912:207021-207040 None:intergenic 30.0%
! TCCTTTTCGTTGCATTTATT+GGG + tig0018912:207049-207068 None:intergenic 30.0%
! ATCCTTTTCGTTGCATTTAT+TGG + tig0018912:207050-207069 None:intergenic 30.0%
!!! TTTACACAAGAGGTTTTTTC+TGG + tig0018912:207256-207275 None:intergenic 30.0%
AAACCTCTTGTGTAAAAAAC+AGG - tig0018912:207260-207279 Msa1369920:intron 30.0%
AACCTCTTGTGTAAAAAACA+GGG - tig0018912:207261-207280 Msa1369920:intron 30.0%
TAGAATTCCCAAAAAAGTTG+TGG - tig0018912:207402-207421 Msa1369920:intron 30.0%
!!! GTCTATTCCACAACTTTTTT+GGG + tig0018912:207412-207431 None:intergenic 30.0%
CTTGACAAAATTACAAACTC+TGG + tig0018912:207472-207491 None:intergenic 30.0%
ACACAAACGAGTTAAATTTC+AGG + tig0018912:207537-207556 None:intergenic 30.0%
TATTGAATACAGGCAAAACT+TGG - tig0018912:207619-207638 Msa1369920:intron 30.0%
GTTTATTATTCTCTTAGCCA+TGG + tig0018912:208065-208084 None:intergenic 30.0%
TGTTTGAACATTGAGCTTAA+AGG + tig0018912:208168-208187 None:intergenic 30.0%
GTAATATAGTCAATCAGCTT+AGG + tig0018912:206587-206606 None:intergenic 30.0%
GCTGATTGACTATATTACTT+CGG - tig0018912:206589-206608 Msa1369920:three_prime_UTR 30.0%
CTGATTGACTATATTACTTC+GGG - tig0018912:206590-206609 Msa1369920:three_prime_UTR 30.0%
!!! TTTCTGGTTTTATGTTTGCA+AGG - tig0018912:206694-206713 Msa1369920:CDS 30.0%
CTTATCTTGATTCTTGACTA+AGG + tig0018912:206870-206889 None:intergenic 30.0%
! AAGATCTTGTGATGAACTTT+TGG - tig0018912:206936-206955 Msa1369920:intron 30.0%
TTTGGCAGGAATATTATTCA+TGG - tig0018912:206954-206973 Msa1369920:intron 30.0%
CTGAATCATGATACTATAAG+AGG + tig0018912:207021-207040 None:intergenic 30.0%
! TCCTTTTCGTTGCATTTATT+GGG + tig0018912:207049-207068 None:intergenic 30.0%
! ATCCTTTTCGTTGCATTTAT+TGG + tig0018912:207050-207069 None:intergenic 30.0%
!!! TTTACACAAGAGGTTTTTTC+TGG + tig0018912:207256-207275 None:intergenic 30.0%
AAACCTCTTGTGTAAAAAAC+AGG - tig0018912:207260-207279 Msa1369920:intron 30.0%
AACCTCTTGTGTAAAAAACA+GGG - tig0018912:207261-207280 Msa1369920:intron 30.0%
TAGAATTCCCAAAAAAGTTG+TGG - tig0018912:207402-207421 Msa1369920:intron 30.0%
!!! GTCTATTCCACAACTTTTTT+GGG + tig0018912:207412-207431 None:intergenic 30.0%
CTTGACAAAATTACAAACTC+TGG + tig0018912:207472-207491 None:intergenic 30.0%
ACACAAACGAGTTAAATTTC+AGG + tig0018912:207537-207556 None:intergenic 30.0%
TATTGAATACAGGCAAAACT+TGG - tig0018912:207619-207638 Msa1369920:intron 30.0%
GTTTATTATTCTCTTAGCCA+TGG + tig0018912:208065-208084 None:intergenic 30.0%
TGTTTGAACATTGAGCTTAA+AGG + tig0018912:208168-208187 None:intergenic 30.0%
GGAAGAAAGACTTCTGATTT+AGG + tig0018912:206565-206584 None:intergenic 35.0%
AGTTATACCATAGACACAAC+GGG + tig0018912:206617-206636 None:intergenic 35.0%
GAGTTATACCATAGACACAA+CGG + tig0018912:206618-206637 None:intergenic 35.0%
TAGTATCCCATTCTCAATGA+GGG - tig0018912:206645-206664 Msa1369920:three_prime_UTR 35.0%
TACCTGTTGAATGTACTTTC+TGG - tig0018912:206678-206697 Msa1369920:exon 35.0%
! AACCAGAAAGTACATTCAAC+AGG + tig0018912:206683-206702 None:intergenic 35.0%
! GTTTTATGTTTGCAAGGCTT+GGG - tig0018912:206700-206719 Msa1369920:CDS 35.0%
! ATTCATAGGGTGTGTTTTTC+TGG - tig0018912:206890-206909 Msa1369920:intron 35.0%
!!! GTGTTTTTCTGGTTGATTTG+AGG - tig0018912:206901-206920 Msa1369920:intron 35.0%
ACCCAATAAATGCAACGAAA+AGG - tig0018912:207045-207064 Msa1369920:intron 35.0%
ATTTGTCCTAGAAACAACCT+TGG - tig0018912:207181-207200 Msa1369920:intron 35.0%
GTTATTGTCATGTGACTGAA+AGG - tig0018912:207216-207235 Msa1369920:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + tig0018912:207266-207285 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - tig0018912:207266-207285 Msa1369920:intron 35.0%
AGTGAACTAAAACTCCAACA+GGG + tig0018912:207323-207342 None:intergenic 35.0%
!!! TGTTGGAGTTTTAGTTCACT+GGG - tig0018912:207323-207342 Msa1369920:intron 35.0%
!!! GGTCTATTCCACAACTTTTT+TGG + tig0018912:207413-207432 None:intergenic 35.0%
! TTGGCATGCATAAGCATTTT+AGG - tig0018912:207638-207657 Msa1369920:intron 35.0%
GCACAAGTTGTATAAACTGT+TGG - tig0018912:207672-207691 Msa1369920:intron 35.0%
!!! TTGCTTCTTTTTCGGTAACA+GGG + tig0018912:207701-207720 None:intergenic 35.0%
!!! AGGTATGGGTTTTGTTCAAA+AGG + tig0018912:207743-207762 None:intergenic 35.0%
CAATCTCGTTGTATCTAAGA+TGG + tig0018912:207834-207853 None:intergenic 35.0%
CAACGAGATTGATCATTGAA+TGG - tig0018912:207843-207862 Msa1369920:intron 35.0%
TGCAGCAAATGGAAATAACT+GGG + tig0018912:207991-208010 None:intergenic 35.0%
TGAACATTGAGCTTAAAGGA+GGG + tig0018912:208164-208183 None:intergenic 35.0%
TTGAACATTGAGCTTAAAGG+AGG + tig0018912:208165-208184 None:intergenic 35.0%
GGAAGAAAGACTTCTGATTT+AGG + tig0018912:206565-206584 None:intergenic 35.0%
AGTTATACCATAGACACAAC+GGG + tig0018912:206617-206636 None:intergenic 35.0%
GAGTTATACCATAGACACAA+CGG + tig0018912:206618-206637 None:intergenic 35.0%
TAGTATCCCATTCTCAATGA+GGG - tig0018912:206645-206664 Msa1369920:three_prime_UTR 35.0%
TACCTGTTGAATGTACTTTC+TGG - tig0018912:206678-206697 Msa1369920:exon 35.0%
! AACCAGAAAGTACATTCAAC+AGG + tig0018912:206683-206702 None:intergenic 35.0%
! GTTTTATGTTTGCAAGGCTT+GGG - tig0018912:206700-206719 Msa1369920:CDS 35.0%
! ATTCATAGGGTGTGTTTTTC+TGG - tig0018912:206890-206909 Msa1369920:intron 35.0%
!!! GTGTTTTTCTGGTTGATTTG+AGG - tig0018912:206901-206920 Msa1369920:intron 35.0%
ACCCAATAAATGCAACGAAA+AGG - tig0018912:207045-207064 Msa1369920:intron 35.0%
ATTTGTCCTAGAAACAACCT+TGG - tig0018912:207181-207200 Msa1369920:intron 35.0%
GTTATTGTCATGTGACTGAA+AGG - tig0018912:207216-207235 Msa1369920:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + tig0018912:207266-207285 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - tig0018912:207266-207285 Msa1369920:intron 35.0%
AGTGAACTAAAACTCCAACA+GGG + tig0018912:207323-207342 None:intergenic 35.0%
!!! TGTTGGAGTTTTAGTTCACT+GGG - tig0018912:207323-207342 Msa1369920:intron 35.0%
!!! GGTCTATTCCACAACTTTTT+TGG + tig0018912:207413-207432 None:intergenic 35.0%
! TTGGCATGCATAAGCATTTT+AGG - tig0018912:207638-207657 Msa1369920:intron 35.0%
GCACAAGTTGTATAAACTGT+TGG - tig0018912:207672-207691 Msa1369920:intron 35.0%
!!! TTGCTTCTTTTTCGGTAACA+GGG + tig0018912:207701-207720 None:intergenic 35.0%
!!! AGGTATGGGTTTTGTTCAAA+AGG + tig0018912:207743-207762 None:intergenic 35.0%
CAATCTCGTTGTATCTAAGA+TGG + tig0018912:207834-207853 None:intergenic 35.0%
CAACGAGATTGATCATTGAA+TGG - tig0018912:207843-207862 Msa1369920:intron 35.0%
TGCAGCAAATGGAAATAACT+GGG + tig0018912:207991-208010 None:intergenic 35.0%
TGAACATTGAGCTTAAAGGA+GGG + tig0018912:208164-208183 None:intergenic 35.0%
TTGAACATTGAGCTTAAAGG+AGG + tig0018912:208165-208184 None:intergenic 35.0%
GTTATACCATAGACACAACG+GGG + tig0018912:206616-206635 None:intergenic 40.0%
CATTGAGAATGGGATACTAG+TGG + tig0018912:206644-206663 None:intergenic 40.0%
CTAGTATCCCATTCTCAATG+AGG - tig0018912:206644-206663 Msa1369920:three_prime_UTR 40.0%
GTGAAACCCTCATTGAGAAT+GGG + tig0018912:206654-206673 None:intergenic 40.0%
TGTGAAACCCTCATTGAGAA+TGG + tig0018912:206655-206674 None:intergenic 40.0%
!! GGTTTTATGTTTGCAAGGCT+TGG - tig0018912:206699-206718 Msa1369920:CDS 40.0%
!! ACTTTGCTGTTGAAACAGGA+AGG - tig0018912:206807-206826 Msa1369920:intron 40.0%
!! TTCTGGTTGATTTGAGGATG+TGG - tig0018912:206907-206926 Msa1369920:intron 40.0%
! TCTTGTGATGAACTTTTGGC+AGG - tig0018912:206940-206959 Msa1369920:intron 40.0%
! TAGAAACAACCTTGGTGCAA+CGG - tig0018912:207189-207208 Msa1369920:intron 40.0%
ATAACTTTACCGTTGCACCA+AGG + tig0018912:207201-207220 None:intergenic 40.0%
TAAGGCTACACCAAAATGGT+GGG - tig0018912:207284-207303 Msa1369920:intron 40.0%
CAGTGAACTAAAACTCCAAC+AGG + tig0018912:207324-207343 None:intergenic 40.0%
!!! CTGTTGGAGTTTTAGTTCAC+TGG - tig0018912:207322-207341 Msa1369920:intron 40.0%
ATGCTCATCAAAGCAAACTG+TGG + tig0018912:207376-207395 None:intergenic 40.0%
AAACTCTGGATTCTACTAGC+AGG + tig0018912:207458-207477 None:intergenic 40.0%
ACACACAATTCTGCGAACAT+AGG + tig0018912:207560-207579 None:intergenic 40.0%
GCAGAATTGTGTGTAACTGT+GGG - tig0018912:207566-207585 Msa1369920:intron 40.0%
!! AAGCATTTTAGGTGATGCAC+AGG - tig0018912:207649-207668 Msa1369920:intron 40.0%
!! AGCATTTTAGGTGATGCACA+GGG - tig0018912:207650-207669 Msa1369920:intron 40.0%
!!! GTTGCTTCTTTTTCGGTAAC+AGG + tig0018912:207702-207721 None:intergenic 40.0%
!! GCTCACTGTTGCTTCTTTTT+CGG + tig0018912:207709-207728 None:intergenic 40.0%
! CTTTACACTGTTGGGTTTTG+TGG + tig0018912:207769-207788 None:intergenic 40.0%
AAACCCAACAGTGTAAAGAG+TGG - tig0018912:207771-207790 Msa1369920:CDS 40.0%
CAACCACTCTTTACACTGTT+GGG + tig0018912:207777-207796 None:intergenic 40.0%
CTGCAGCAAATGGAAATAAC+TGG + tig0018912:207992-208011 None:intergenic 40.0%
AGGAAGGCGAATTATGTGAA+TGG - tig0018912:208024-208043 Msa1369920:CDS 40.0%
ATTCTCTTAGCCATGGATGT+AGG + tig0018912:208058-208077 None:intergenic 40.0%
GTTATACCATAGACACAACG+GGG + tig0018912:206616-206635 None:intergenic 40.0%
CATTGAGAATGGGATACTAG+TGG + tig0018912:206644-206663 None:intergenic 40.0%
CTAGTATCCCATTCTCAATG+AGG - tig0018912:206644-206663 Msa1369920:three_prime_UTR 40.0%
GTGAAACCCTCATTGAGAAT+GGG + tig0018912:206654-206673 None:intergenic 40.0%
TGTGAAACCCTCATTGAGAA+TGG + tig0018912:206655-206674 None:intergenic 40.0%
!! GGTTTTATGTTTGCAAGGCT+TGG - tig0018912:206699-206718 Msa1369920:CDS 40.0%
!! ACTTTGCTGTTGAAACAGGA+AGG - tig0018912:206807-206826 Msa1369920:intron 40.0%
!! TTCTGGTTGATTTGAGGATG+TGG - tig0018912:206907-206926 Msa1369920:intron 40.0%
! TCTTGTGATGAACTTTTGGC+AGG - tig0018912:206940-206959 Msa1369920:intron 40.0%
! TAGAAACAACCTTGGTGCAA+CGG - tig0018912:207189-207208 Msa1369920:intron 40.0%
ATAACTTTACCGTTGCACCA+AGG + tig0018912:207201-207220 None:intergenic 40.0%
TAAGGCTACACCAAAATGGT+GGG - tig0018912:207284-207303 Msa1369920:intron 40.0%
CAGTGAACTAAAACTCCAAC+AGG + tig0018912:207324-207343 None:intergenic 40.0%
!!! CTGTTGGAGTTTTAGTTCAC+TGG - tig0018912:207322-207341 Msa1369920:intron 40.0%
ATGCTCATCAAAGCAAACTG+TGG + tig0018912:207376-207395 None:intergenic 40.0%
AAACTCTGGATTCTACTAGC+AGG + tig0018912:207458-207477 None:intergenic 40.0%
ACACACAATTCTGCGAACAT+AGG + tig0018912:207560-207579 None:intergenic 40.0%
GCAGAATTGTGTGTAACTGT+GGG - tig0018912:207566-207585 Msa1369920:intron 40.0%
!! AAGCATTTTAGGTGATGCAC+AGG - tig0018912:207649-207668 Msa1369920:intron 40.0%
!! AGCATTTTAGGTGATGCACA+GGG - tig0018912:207650-207669 Msa1369920:intron 40.0%
!!! GTTGCTTCTTTTTCGGTAAC+AGG + tig0018912:207702-207721 None:intergenic 40.0%
!! GCTCACTGTTGCTTCTTTTT+CGG + tig0018912:207709-207728 None:intergenic 40.0%
! CTTTACACTGTTGGGTTTTG+TGG + tig0018912:207769-207788 None:intergenic 40.0%
AAACCCAACAGTGTAAAGAG+TGG - tig0018912:207771-207790 Msa1369920:CDS 40.0%
CAACCACTCTTTACACTGTT+GGG + tig0018912:207777-207796 None:intergenic 40.0%
CTGCAGCAAATGGAAATAAC+TGG + tig0018912:207992-208011 None:intergenic 40.0%
AGGAAGGCGAATTATGTGAA+TGG - tig0018912:208024-208043 Msa1369920:CDS 40.0%
ATTCTCTTAGCCATGGATGT+AGG + tig0018912:208058-208077 None:intergenic 40.0%
TTATGTTTGCAAGGCTTGGG+AGG - tig0018912:206703-206722 Msa1369920:CDS 45.0%
TATGTTTGCAAGGCTTGGGA+GGG - tig0018912:206704-206723 Msa1369920:CDS 45.0%
CCTATAAGCTTACGTGCTGA+TGG + tig0018912:206743-206762 None:intergenic 45.0%
CCATCAGCACGTAAGCTTAT+AGG - tig0018912:206740-206759 Msa1369920:intron 45.0%
AAGTCTCCTCTTATTGTGCC+TGG + tig0018912:206791-206810 None:intergenic 45.0%
!! GGAGACTTTGCTGTTGAAAC+AGG - tig0018912:206803-206822 Msa1369920:intron 45.0%
GCTGTTGAAACAGGAAGGTA+AGG - tig0018912:206812-206831 Msa1369920:intron 45.0%
!! TTTCACGCTCGCCATTTTCA+GGG + tig0018912:206989-207008 None:intergenic 45.0%
!! ATTTCACGCTCGCCATTTTC+AGG + tig0018912:206990-207009 None:intergenic 45.0%
GAAAATGGCGAGCGTGAAAT+AGG - tig0018912:206990-207009 Msa1369920:intron 45.0%
!! GTTGCACCAAGGTTGTTTCT+AGG + tig0018912:207190-207209 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+AGG - tig0018912:207223-207242 Msa1369920:intron 45.0%
AGGGTAAGGCTACACCAAAA+TGG - tig0018912:207280-207299 Msa1369920:intron 45.0%
GTAAGGCTACACCAAAATGG+TGG - tig0018912:207283-207302 Msa1369920:intron 45.0%
!! AAAATGGTGGGACCCCTTTT+CGG - tig0018912:207296-207315 Msa1369920:intron 45.0%
CGCAGAATTGTGTGTAACTG+TGG - tig0018912:207565-207584 Msa1369920:intron 45.0%
!! TACACTGTTGGGTTTTGTGG+TGG + tig0018912:207766-207785 None:intergenic 45.0%
GCAACCACTCTTTACACTGT+TGG + tig0018912:207778-207797 None:intergenic 45.0%
! TTCCATTTGCTGCAGCTCTA+TGG - tig0018912:207997-208016 Msa1369920:CDS 45.0%
AACCATAGAGCTGCAGCAAA+TGG + tig0018912:208002-208021 None:intergenic 45.0%
TTATGTTTGCAAGGCTTGGG+AGG - tig0018912:206703-206722 Msa1369920:CDS 45.0%
TATGTTTGCAAGGCTTGGGA+GGG - tig0018912:206704-206723 Msa1369920:CDS 45.0%
CCTATAAGCTTACGTGCTGA+TGG + tig0018912:206743-206762 None:intergenic 45.0%
CCATCAGCACGTAAGCTTAT+AGG - tig0018912:206740-206759 Msa1369920:intron 45.0%
AAGTCTCCTCTTATTGTGCC+TGG + tig0018912:206791-206810 None:intergenic 45.0%
!! GGAGACTTTGCTGTTGAAAC+AGG - tig0018912:206803-206822 Msa1369920:intron 45.0%
GCTGTTGAAACAGGAAGGTA+AGG - tig0018912:206812-206831 Msa1369920:intron 45.0%
!! TTTCACGCTCGCCATTTTCA+GGG + tig0018912:206989-207008 None:intergenic 45.0%
!! ATTTCACGCTCGCCATTTTC+AGG + tig0018912:206990-207009 None:intergenic 45.0%
GAAAATGGCGAGCGTGAAAT+AGG - tig0018912:206990-207009 Msa1369920:intron 45.0%
!! GTTGCACCAAGGTTGTTTCT+AGG + tig0018912:207190-207209 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+AGG - tig0018912:207223-207242 Msa1369920:intron 45.0%
AGGGTAAGGCTACACCAAAA+TGG - tig0018912:207280-207299 Msa1369920:intron 45.0%
GTAAGGCTACACCAAAATGG+TGG - tig0018912:207283-207302 Msa1369920:intron 45.0%
!! AAAATGGTGGGACCCCTTTT+CGG - tig0018912:207296-207315 Msa1369920:intron 45.0%
CGCAGAATTGTGTGTAACTG+TGG - tig0018912:207565-207584 Msa1369920:intron 45.0%
!! TACACTGTTGGGTTTTGTGG+TGG + tig0018912:207766-207785 None:intergenic 45.0%
GCAACCACTCTTTACACTGT+TGG + tig0018912:207778-207797 None:intergenic 45.0%
! TTCCATTTGCTGCAGCTCTA+TGG - tig0018912:207997-208016 Msa1369920:CDS 45.0%
AACCATAGAGCTGCAGCAAA+TGG + tig0018912:208002-208021 None:intergenic 45.0%
AATCCTCTGCAAGCAGAACC+AGG - tig0018912:206770-206789 Msa1369920:intron 50.0%
GCAGAACCAGGCACAATAAG+AGG - tig0018912:206782-206801 Msa1369920:intron 50.0%
TGGCGAGCGTGAAATAGGTA+AGG - tig0018912:206995-207014 Msa1369920:intron 50.0%
! GAAAAGGGGTCCCACCATTT+TGG + tig0018912:207297-207316 None:intergenic 50.0%
ACTCCAACAGGGTCCGAAAA+GGG + tig0018912:207312-207331 None:intergenic 50.0%
AACTCCAACAGGGTCCGAAA+AGG + tig0018912:207313-207332 None:intergenic 50.0%
TCAGGATCACTCTTCGCTGT+TGG + tig0018912:207519-207538 None:intergenic 50.0%
!! GGGTTTTGTGGTGGAGGTAT+GGG + tig0018912:207757-207776 None:intergenic 50.0%
!! TGGGTTTTGTGGTGGAGGTA+TGG + tig0018912:207758-207777 None:intergenic 50.0%
!! ACTGTTGGGTTTTGTGGTGG+AGG + tig0018912:207763-207782 None:intergenic 50.0%
CAGTGTAAAGAGTGGTTGCG+AGG - tig0018912:207779-207798 Msa1369920:CDS 50.0%
TGCTGCAGCTCTATGGTTCA+AGG - tig0018912:208004-208023 Msa1369920:CDS 50.0%
GCAGCTCTATGGTTCAAGGA+AGG - tig0018912:208008-208027 Msa1369920:CDS 50.0%
CTTAGCCATGGATGTAGGAC+AGG + tig0018912:208053-208072 None:intergenic 50.0%
TCGTTGTCATTGCGCATCTC+TGG + tig0018912:208087-208106 None:intergenic 50.0%
AATCCTCTGCAAGCAGAACC+AGG - tig0018912:206770-206789 Msa1369920:intron 50.0%
GCAGAACCAGGCACAATAAG+AGG - tig0018912:206782-206801 Msa1369920:intron 50.0%
TGGCGAGCGTGAAATAGGTA+AGG - tig0018912:206995-207014 Msa1369920:intron 50.0%
! GAAAAGGGGTCCCACCATTT+TGG + tig0018912:207297-207316 None:intergenic 50.0%
ACTCCAACAGGGTCCGAAAA+GGG + tig0018912:207312-207331 None:intergenic 50.0%
AACTCCAACAGGGTCCGAAA+AGG + tig0018912:207313-207332 None:intergenic 50.0%
TCAGGATCACTCTTCGCTGT+TGG + tig0018912:207519-207538 None:intergenic 50.0%
!! GGGTTTTGTGGTGGAGGTAT+GGG + tig0018912:207757-207776 None:intergenic 50.0%
!! TGGGTTTTGTGGTGGAGGTA+TGG + tig0018912:207758-207777 None:intergenic 50.0%
!! ACTGTTGGGTTTTGTGGTGG+AGG + tig0018912:207763-207782 None:intergenic 50.0%
CAGTGTAAAGAGTGGTTGCG+AGG - tig0018912:207779-207798 Msa1369920:CDS 50.0%
TGCTGCAGCTCTATGGTTCA+AGG - tig0018912:208004-208023 Msa1369920:CDS 50.0%
GCAGCTCTATGGTTCAAGGA+AGG - tig0018912:208008-208027 Msa1369920:CDS 50.0%
CTTAGCCATGGATGTAGGAC+AGG + tig0018912:208053-208072 None:intergenic 50.0%
TCGTTGTCATTGCGCATCTC+TGG + tig0018912:208087-208106 None:intergenic 50.0%
GGCAGTGACAGCCCTGAAAA+TGG - tig0018912:206975-206994 Msa1369920:intron 55.0%
CTCCAACAGGGTCCGAAAAG+GGG + tig0018912:207311-207330 None:intergenic 55.0%
GGACTCCTGTCCTACATCCA+TGG - tig0018912:208045-208064 Msa1369920:intron 55.0%
GGCAGTGACAGCCCTGAAAA+TGG - tig0018912:206975-206994 Msa1369920:intron 55.0%
CTCCAACAGGGTCCGAAAAG+GGG + tig0018912:207311-207330 None:intergenic 55.0%
GGACTCCTGTCCTACATCCA+TGG - tig0018912:208045-208064 Msa1369920:intron 55.0%
TTCGGGCCCCGTTGTGTCTA+TGG - tig0018912:206607-206626 Msa1369920:three_prime_UTR 60.0%
! TGCAAGGCTTGGGAGGGTGT+TGG - tig0018912:206710-206729 Msa1369920:CDS 60.0%
!! GTGCCTGGTTCTGCTTGCAG+AGG + tig0018912:206776-206795 None:intergenic 60.0%
! GACCCCTTTTCGGACCCTGT+TGG - tig0018912:207306-207325 Msa1369920:intron 60.0%
TTCGGGCCCCGTTGTGTCTA+TGG - tig0018912:206607-206626 Msa1369920:three_prime_UTR 60.0%
! TGCAAGGCTTGGGAGGGTGT+TGG - tig0018912:206710-206729 Msa1369920:CDS 60.0%
!! GTGCCTGGTTCTGCTTGCAG+AGG + tig0018912:206776-206795 None:intergenic 60.0%
! GACCCCTTTTCGGACCCTGT+TGG - tig0018912:207306-207325 Msa1369920:intron 60.0%
Chromosome Type Strat End Strand Name
tig0018912 gene 206542 208225 206542 ID=Msa1369920;Name=Msa1369920
tig0018912 mRNA 206542 208225 206542 ID=Msa1369920-mRNA-1;Parent=Msa1369920;Name=Msa1369920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.75|1|1|1|4|146|105
tig0018912 exon 206542 206755 206542 ID=Msa1369920-mRNA-1:exon:1409;Parent=Msa1369920-mRNA-1
tig0018912 exon 207756 207805 207756 ID=Msa1369920-mRNA-1:exon:1408;Parent=Msa1369920-mRNA-1
tig0018912 exon 207939 208051 207939 ID=Msa1369920-mRNA-1:exon:1407;Parent=Msa1369920-mRNA-1
tig0018912 exon 208139 208225 208139 ID=Msa1369920-mRNA-1:exon:1406;Parent=Msa1369920-mRNA-1
tig0018912 CDS 208139 208225 208139 ID=Msa1369920-mRNA-1:cds;Parent=Msa1369920-mRNA-1
tig0018912 CDS 207939 208051 207939 ID=Msa1369920-mRNA-1:cds;Parent=Msa1369920-mRNA-1
tig0018912 CDS 207756 207805 207756 ID=Msa1369920-mRNA-1:cds;Parent=Msa1369920-mRNA-1
tig0018912 CDS 206688 206755 206688 ID=Msa1369920-mRNA-1:cds;Parent=Msa1369920-mRNA-1
tig0018912 three_prime_UTR 206542 206687 206542 ID=Msa1369920-mRNA-1:three_prime_utr;Parent=Msa1369920-mRNA-1
Gene Sequence

>Msa1369920

TTTCAGGAGCATTACAAGGACCTAAATCAGAAGTCTTTCTTCCCTAAGCTGATTGACTATATTACTTCGGGCCCCGTTGTGTCTATGGCTTGGGAGGGTGTTGGAGTAGTGCCATCAGCACGTAAGCTTATAGGAGCAACAAATCCTCTGCAAGCAGAACCAGGCACAATAAGAGGAGACTTTGCTGTTGAAACAGGAAGGAATATTATTCATGGCAGTGACAGCCCTGAAAATGGCGAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGTGAATGGACTCCTGTCCTACATCCATGGCTAAGAGAATAA

Protein sequence

>Msa1369920

FQEHYKDLNQKSFFPKLIDYITSGPVVSMAWEGVGVVPSARKLIGATNPLQAEPGTIRGDFAVETGRNIIHGSDSPENGEREIALWFKEGELCEWTPVLHPWLRE*