AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1332050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332050 MtrunA17_Chr4g0064091 96.774 279 8 1 5 283 202 479 0.0 564
Msa1332050 MtrunA17_Chr2g0333591 48.031 254 124 4 5 258 199 444 2.56e-78 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332050 AT2G42160.1 62.500 280 101 3 5 283 212 488 8.76e-126 367
Msa1332050 AT2G42160.2 64.474 228 79 1 5 232 212 437 4.11e-106 316
Msa1332050 AT2G42160.3 65.104 192 65 1 5 196 212 401 5.43e-90 273
Msa1332050 AT2G26000.3 40.714 280 159 4 5 283 205 478 3.25e-71 227
Msa1332050 AT2G26000.2 40.714 280 159 4 5 283 205 478 3.25e-71 227
Msa1332050 AT2G26000.1 36.786 280 152 5 5 283 205 460 3.06e-58 193

Find 52 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAAGATTTAGAAGTTAA+TGG 0.246664 8_4:+51895655 Msa1332050:CDS
GTGGAGAAGGCTGCAACTTC+TGG 0.280137 8_4:+51896675 Msa1332050:CDS
GAATGAGAGGGTCCTTGATT+TGG 0.301939 8_4:+51897062 Msa1332050:CDS
CATTCTGCCCTTAGGTTAAT+CGG 0.302536 8_4:+51896816 Msa1332050:intron
GTGAAGATTTAGAAGTTAAT+GGG 0.313739 8_4:+51895656 Msa1332050:CDS
CATCCTGTTGTTGACATAAT+CGG 0.338420 8_4:-51895180 None:intergenic
GTCAGACTCAAATGGAATAA+AGG 0.364370 8_4:+51897228 Msa1332050:CDS
TTATGTCCATCGACTGAATC+AGG 0.387311 8_4:+51895549 Msa1332050:CDS
ACAACAAATTTGGGATTATG+TGG 0.392975 8_4:+51895519 Msa1332050:CDS
CCGTCTTCTTACATCTCAAT+TGG 0.403056 8_4:+51896268 Msa1332050:CDS
GTCTGGGTTTGTATGATTTG+TGG 0.411595 8_4:+51895241 Msa1332050:CDS
GTGGAACATTAGATGATGTC+TGG 0.413609 8_4:+51895224 Msa1332050:CDS
ACTTCTTGCCTCAATTAGTA+AGG 0.414456 8_4:-51896625 None:intergenic
GGTCCTTGATTTGGAGGAAC+AGG 0.415267 8_4:+51897071 Msa1332050:CDS
TTCAACTTTGCTGTTAAAGA+AGG 0.416559 8_4:-51895680 None:intergenic
TTCTTGCTGTTTCCAGGAGA+AGG 0.425015 8_4:-51897283 None:intergenic
GCTCATGAGCAACCTTCTCC+TGG 0.443145 8_4:+51897271 Msa1332050:CDS
GTTCACTGTATGTCTCTAGA+AGG 0.443877 8_4:+51895610 Msa1332050:CDS
GGCTGCAACTTCTGGCATGC+TGG 0.450669 8_4:+51896683 Msa1332050:CDS
GATAAAATGTCAGACTCAAA+TGG 0.459339 8_4:+51897220 Msa1332050:CDS
CTGCCGATTATGTCAACAAC+AGG 0.469592 8_4:+51895177 Msa1332050:CDS
TTATGAATCCTTACTAATTG+AGG 0.471285 8_4:+51896617 Msa1332050:CDS
TGTATGATTTGTGGATTTGT+CGG 0.483896 8_4:+51895250 Msa1332050:CDS
TGAGAGGGTCCTTGATTTGG+AGG 0.485934 8_4:+51897065 Msa1332050:CDS
ATTTGTGGATTTGTCGGATG+TGG 0.494341 8_4:+51895256 Msa1332050:CDS
CTTCTCCACTGCTTCAGATA+CGG 0.513939 8_4:-51896661 None:intergenic
CAGGATCAATCTAGAATTGA+CGG 0.519347 8_4:+51895568 Msa1332050:CDS
TTCACTGTATGTCTCTAGAA+GGG 0.522047 8_4:+51895611 Msa1332050:CDS
GTTCCACAAATAAAACAAGT+TGG 0.529607 8_4:-51895208 None:intergenic
AAGGACATGCTATTCAGCAT+TGG 0.544403 8_4:+51895458 Msa1332050:CDS
ATTGATCCTGATTCAGTCGA+TGG 0.544517 8_4:-51895555 None:intergenic
ATACCTGTTCCTCCAAATCA+AGG 0.546149 8_4:-51897074 None:intergenic
CTTTAACAGCAAAGTTGAAG+CGG 0.546937 8_4:+51895684 Msa1332050:CDS
TGGAACATTAGATGATGTCT+GGG 0.559204 8_4:+51895225 Msa1332050:CDS
CGTATCTGAAGCAGTGGAGA+AGG 0.559498 8_4:+51896662 Msa1332050:CDS
AGATTAAAGAAGCAGAAGAG+AGG 0.561135 8_4:+51896873 Msa1332050:CDS
CAACAAATTTGGGATTATGT+GGG 0.563048 8_4:+51895520 Msa1332050:CDS
GAAGGTTGCTCATGAGCCAC+TGG 0.563743 8_4:-51897265 None:intergenic
CATTGAAGTCGATGAATGAG+AGG 0.577929 8_4:+51897049 Msa1332050:CDS
TAGAATTGACGGCAAGTCGA+AGG 0.578499 8_4:+51895579 Msa1332050:CDS
AGAAAGAAATGTTGTTGCTG+AGG 0.588529 8_4:+51896737 Msa1332050:CDS
AGACTCAAATGGAATAAAGG+AGG 0.592588 8_4:+51897231 Msa1332050:CDS
GTGGATTTGTCGGATGTGGA+AGG 0.595592 8_4:+51895260 Msa1332050:CDS
AAGCTCCGTATCTGAAGCAG+TGG 0.608444 8_4:+51896656 Msa1332050:CDS
GACTCAAATGGAATAAAGGA+GGG 0.622185 8_4:+51897232 Msa1332050:CDS
TGAAGATTTAGAAGTTAATG+GGG 0.626069 8_4:+51895657 Msa1332050:CDS
TCACTGTATGTCTCTAGAAG+GGG 0.634476 8_4:+51895612 Msa1332050:CDS
CCAATTGAGATGTAAGAAGA+CGG 0.636618 8_4:-51896268 None:intergenic
AAAACAGAAAGTCTGGTCGA+AGG 0.644959 8_4:+51897305 Msa1332050:CDS
ACAGAAAGTCTGGTCGAAGG+CGG 0.651997 8_4:+51897308 Msa1332050:CDS
ATTGAAGTCGATGAATGAGA+GGG 0.674240 8_4:+51897050 Msa1332050:CDS
GGAGGGAACAGTCTTACCAG+TGG 0.721862 8_4:+51897249 Msa1332050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATGACAATAAAAT+GGG - chr8_4:51895370-51895389 None:intergenic 10.0%
!! TATATAAATGACAATAAAAT+GGG - chr8_4:51895370-51895389 None:intergenic 10.0%
!! TTTGTTTAACATATTAAGTA+GGG - chr8_4:51895342-51895361 None:intergenic 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG - chr8_4:51895343-51895362 None:intergenic 15.0%
!! CTATATAAATGACAATAAAA+TGG - chr8_4:51895371-51895390 None:intergenic 15.0%
!!! CATTTTATTGTCATTTATAT+AGG + chr8_4:51895369-51895388 Msa1332050:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG + chr8_4:51895439-51895458 Msa1332050:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG - chr8_4:51895789-51895808 None:intergenic 15.0%
!! CATTTATAGAATAACTATAT+GGG - chr8_4:51896067-51896086 None:intergenic 15.0%
!! CATATAGTTATTCTATAAAT+GGG + chr8_4:51896066-51896085 Msa1332050:intron 15.0%
!! TCATAATACTAAAACAAAAA+TGG - chr8_4:51896603-51896622 None:intergenic 15.0%
!!! GTAAAGTTGTTTTTTTTTTT+TGG + chr8_4:51896965-51896984 Msa1332050:intron 15.0%
!! TTTAAATATGTGATCATTTA+GGG + chr8_4:51897017-51897036 Msa1332050:intron 15.0%
!! TTTGTTTAACATATTAAGTA+GGG - chr8_4:51895342-51895361 None:intergenic 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG - chr8_4:51895343-51895362 None:intergenic 15.0%
!! CTATATAAATGACAATAAAA+TGG - chr8_4:51895371-51895390 None:intergenic 15.0%
!!! CATTTTATTGTCATTTATAT+AGG + chr8_4:51895369-51895388 Msa1332050:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG + chr8_4:51895439-51895458 Msa1332050:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG - chr8_4:51895789-51895808 None:intergenic 15.0%
!! CATTTATAGAATAACTATAT+GGG - chr8_4:51896067-51896086 None:intergenic 15.0%
!! CATATAGTTATTCTATAAAT+GGG + chr8_4:51896066-51896085 Msa1332050:intron 15.0%
!! TCATAATACTAAAACAAAAA+TGG - chr8_4:51896603-51896622 None:intergenic 15.0%
!!! GTAAAGTTGTTTTTTTTTTT+TGG + chr8_4:51896965-51896984 Msa1332050:intron 15.0%
!! TTTAAATATGTGATCATTTA+GGG + chr8_4:51897017-51897036 Msa1332050:intron 15.0%
!! TGGAAATATTATTGTATTGA+TGG + chr8_4:51895112-51895131 Msa1332050:intron 20.0%
!! ACTTATGATGTTTATATTGT+AGG + chr8_4:51895153-51895172 Msa1332050:intron 20.0%
!!! ATTTTAGAACACAACAAATT+TGG + chr8_4:51895509-51895528 Msa1332050:CDS 20.0%
!!! TTTTAGAACACAACAAATTT+GGG + chr8_4:51895510-51895529 Msa1332050:CDS 20.0%
!!! ATTTTATGCTGATACTAATT+TGG + chr8_4:51895918-51895937 Msa1332050:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG + chr8_4:51895919-51895938 Msa1332050:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG - chr8_4:51896068-51896087 None:intergenic 20.0%
!! CCATATAGTTATTCTATAAA+TGG + chr8_4:51896065-51896084 Msa1332050:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG + chr8_4:51896843-51896862 Msa1332050:CDS 20.0%
!! TTAAACATGTAATGAGAATA+TGG - chr8_4:51897002-51897021 None:intergenic 20.0%
!! GTTTAAATATGTGATCATTT+AGG + chr8_4:51897016-51897035 Msa1332050:intron 20.0%
!! TGGAAATATTATTGTATTGA+TGG + chr8_4:51895112-51895131 Msa1332050:intron 20.0%
!! ACTTATGATGTTTATATTGT+AGG + chr8_4:51895153-51895172 Msa1332050:intron 20.0%
!!! ATTTTAGAACACAACAAATT+TGG + chr8_4:51895509-51895528 Msa1332050:CDS 20.0%
!!! TTTTAGAACACAACAAATTT+GGG + chr8_4:51895510-51895529 Msa1332050:CDS 20.0%
!!! ATTTTATGCTGATACTAATT+TGG + chr8_4:51895918-51895937 Msa1332050:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG + chr8_4:51895919-51895938 Msa1332050:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG - chr8_4:51896068-51896087 None:intergenic 20.0%
!! CCATATAGTTATTCTATAAA+TGG + chr8_4:51896065-51896084 Msa1332050:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG + chr8_4:51896843-51896862 Msa1332050:CDS 20.0%
!! TTAAACATGTAATGAGAATA+TGG - chr8_4:51897002-51897021 None:intergenic 20.0%
!! GTTTAAATATGTGATCATTT+AGG + chr8_4:51897016-51897035 Msa1332050:intron 20.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG + chr8_4:51895295-51895314 Msa1332050:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG + chr8_4:51895392-51895411 Msa1332050:intron 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG + chr8_4:51895393-51895412 Msa1332050:intron 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG + chr8_4:51895655-51895674 Msa1332050:CDS 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG + chr8_4:51895656-51895675 Msa1332050:CDS 25.0%
! TGAAGATTTAGAAGTTAATG+GGG + chr8_4:51895657-51895676 Msa1332050:CDS 25.0%
!! AACCTTAACAAGTTTTTACA+AGG + chr8_4:51895759-51895778 Msa1332050:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG - chr8_4:51896322-51896341 None:intergenic 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG + chr8_4:51896324-51896343 Msa1332050:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG + chr8_4:51896325-51896344 Msa1332050:intron 25.0%
! GTAAACATTAAACTCTATTC+AGG + chr8_4:51896361-51896380 Msa1332050:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG + chr8_4:51896451-51896470 Msa1332050:intron 25.0%
! TTATGAATCCTTACTAATTG+AGG + chr8_4:51896617-51896636 Msa1332050:CDS 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG - chr8_4:51896713-51896732 None:intergenic 25.0%
! TAACTTCATTCCAAACAAAT+TGG - chr8_4:51896922-51896941 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG - chr8_4:51897108-51897127 None:intergenic 25.0%
! ATTGGAAAACTTCTATACAA+AGG - chr8_4:51897119-51897138 None:intergenic 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG + chr8_4:51897135-51897154 Msa1332050:intron 25.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG + chr8_4:51895295-51895314 Msa1332050:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG + chr8_4:51895392-51895411 Msa1332050:intron 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG + chr8_4:51895393-51895412 Msa1332050:intron 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG + chr8_4:51895655-51895674 Msa1332050:CDS 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG + chr8_4:51895656-51895675 Msa1332050:CDS 25.0%
! TGAAGATTTAGAAGTTAATG+GGG + chr8_4:51895657-51895676 Msa1332050:CDS 25.0%
!! AACCTTAACAAGTTTTTACA+AGG + chr8_4:51895759-51895778 Msa1332050:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG - chr8_4:51896322-51896341 None:intergenic 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG + chr8_4:51896324-51896343 Msa1332050:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG + chr8_4:51896325-51896344 Msa1332050:intron 25.0%
! GTAAACATTAAACTCTATTC+AGG + chr8_4:51896361-51896380 Msa1332050:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG + chr8_4:51896451-51896470 Msa1332050:intron 25.0%
! TTATGAATCCTTACTAATTG+AGG + chr8_4:51896617-51896636 Msa1332050:CDS 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG - chr8_4:51896713-51896732 None:intergenic 25.0%
! TAACTTCATTCCAAACAAAT+TGG - chr8_4:51896922-51896941 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG - chr8_4:51897108-51897127 None:intergenic 25.0%
! ATTGGAAAACTTCTATACAA+AGG - chr8_4:51897119-51897138 None:intergenic 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG + chr8_4:51897135-51897154 Msa1332050:intron 25.0%
!!! AAGCCAACTTGTTTTATTTG+TGG + chr8_4:51895205-51895224 Msa1332050:CDS 30.0%
GTTCCACAAATAAAACAAGT+TGG - chr8_4:51895211-51895230 None:intergenic 30.0%
! TGTATGATTTGTGGATTTGT+CGG + chr8_4:51895250-51895269 Msa1332050:CDS 30.0%
! ACAACAAATTTGGGATTATG+TGG + chr8_4:51895519-51895538 Msa1332050:CDS 30.0%
! CAACAAATTTGGGATTATGT+GGG + chr8_4:51895520-51895539 Msa1332050:CDS 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG - chr8_4:51895683-51895702 None:intergenic 30.0%
!! AGCCTTGTAAAAACTTGTTA+AGG - chr8_4:51895764-51895783 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG + chr8_4:51895986-51896005 Msa1332050:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG + chr8_4:51896119-51896138 Msa1332050:intron 30.0%
GCATGTGAAAGAAAAATCAT+CGG - chr8_4:51896199-51896218 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG + chr8_4:51896218-51896237 Msa1332050:intron 30.0%
CCACAGTGAAAAAAATTTCA+AGG - chr8_4:51896326-51896345 None:intergenic 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG + chr8_4:51896323-51896342 Msa1332050:intron 30.0%
GTTTCTTTCACTTATGATGA+AGG + chr8_4:51896487-51896506 Msa1332050:intron 30.0%
AGCAAGCAATAAGGAAATAT+AGG - chr8_4:51896773-51896792 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG - chr8_4:51896910-51896929 None:intergenic 30.0%
! ACTTAAGCTACCAATTTGTT+TGG + chr8_4:51896909-51896928 Msa1332050:intron 30.0%
CCATCAGAGAACAATAAAAT+TGG - chr8_4:51897137-51897156 None:intergenic 30.0%
! CCAATTTTATTGTTCTCTGA+TGG + chr8_4:51897134-51897153 Msa1332050:intron 30.0%
GATAAAATGTCAGACTCAAA+TGG + chr8_4:51897220-51897239 Msa1332050:CDS 30.0%
!!! AAGCCAACTTGTTTTATTTG+TGG + chr8_4:51895205-51895224 Msa1332050:CDS 30.0%
GTTCCACAAATAAAACAAGT+TGG - chr8_4:51895211-51895230 None:intergenic 30.0%
! TGTATGATTTGTGGATTTGT+CGG + chr8_4:51895250-51895269 Msa1332050:CDS 30.0%
! ACAACAAATTTGGGATTATG+TGG + chr8_4:51895519-51895538 Msa1332050:CDS 30.0%
! CAACAAATTTGGGATTATGT+GGG + chr8_4:51895520-51895539 Msa1332050:CDS 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG - chr8_4:51895683-51895702 None:intergenic 30.0%
!! AGCCTTGTAAAAACTTGTTA+AGG - chr8_4:51895764-51895783 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG + chr8_4:51895986-51896005 Msa1332050:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG + chr8_4:51896119-51896138 Msa1332050:intron 30.0%
GCATGTGAAAGAAAAATCAT+CGG - chr8_4:51896199-51896218 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG + chr8_4:51896218-51896237 Msa1332050:intron 30.0%
CCACAGTGAAAAAAATTTCA+AGG - chr8_4:51896326-51896345 None:intergenic 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG + chr8_4:51896323-51896342 Msa1332050:intron 30.0%
GTTTCTTTCACTTATGATGA+AGG + chr8_4:51896487-51896506 Msa1332050:intron 30.0%
AGCAAGCAATAAGGAAATAT+AGG - chr8_4:51896773-51896792 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG - chr8_4:51896910-51896929 None:intergenic 30.0%
! ACTTAAGCTACCAATTTGTT+TGG + chr8_4:51896909-51896928 Msa1332050:intron 30.0%
CCATCAGAGAACAATAAAAT+TGG - chr8_4:51897137-51897156 None:intergenic 30.0%
! CCAATTTTATTGTTCTCTGA+TGG + chr8_4:51897134-51897153 Msa1332050:intron 30.0%
GATAAAATGTCAGACTCAAA+TGG + chr8_4:51897220-51897239 Msa1332050:CDS 30.0%
CATCCTGTTGTTGACATAAT+CGG - chr8_4:51895183-51895202 None:intergenic 35.0%
TGGAACATTAGATGATGTCT+GGG + chr8_4:51895225-51895244 Msa1332050:CDS 35.0%
! CAGGATCAATCTAGAATTGA+CGG + chr8_4:51895568-51895587 Msa1332050:CDS 35.0%
! TTCACTGTATGTCTCTAGAA+GGG + chr8_4:51895611-51895630 Msa1332050:CDS 35.0%
CTTTAACAGCAAAGTTGAAG+CGG + chr8_4:51895684-51895703 Msa1332050:CDS 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG + chr8_4:51895721-51895740 Msa1332050:intron 35.0%
AGCAAACAAAATCATACCAC+AGG - chr8_4:51895974-51895993 None:intergenic 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG + chr8_4:51895987-51896006 Msa1332050:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG + chr8_4:51895988-51896007 Msa1332050:intron 35.0%
TGTCATGTAGACATAGAGAT+AGG + chr8_4:51896041-51896060 Msa1332050:intron 35.0%
ACAACCAAATGTGTGACATT+AGG - chr8_4:51896145-51896164 None:intergenic 35.0%
! TAATGGACATGAACAGATTG+TGG + chr8_4:51896235-51896254 Msa1332050:intron 35.0%
CCAATTGAGATGTAAGAAGA+CGG - chr8_4:51896271-51896290 None:intergenic 35.0%
CTAGTTTCTTGAATGTCAAC+TGG + chr8_4:51896428-51896447 Msa1332050:intron 35.0%
TTCACTTATGATGAAGGCTT+TGG + chr8_4:51896493-51896512 Msa1332050:intron 35.0%
TCACTTATGATGAAGGCTTT+GGG + chr8_4:51896494-51896513 Msa1332050:intron 35.0%
AATTGCTATGATACTCGCAA+TGG + chr8_4:51896519-51896538 Msa1332050:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG + chr8_4:51896520-51896539 Msa1332050:intron 35.0%
ACTTCTTGCCTCAATTAGTA+AGG - chr8_4:51896628-51896647 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG + chr8_4:51896737-51896756 Msa1332050:CDS 35.0%
CAGAGTTAAAGCAAGCAATA+AGG - chr8_4:51896782-51896801 None:intergenic 35.0%
AGATTAAAGAAGCAGAAGAG+AGG + chr8_4:51896873-51896892 Msa1332050:CDS 35.0%
ATTGAAGTCGATGAATGAGA+GGG + chr8_4:51897050-51897069 Msa1332050:CDS 35.0%
GTCAGACTCAAATGGAATAA+AGG + chr8_4:51897228-51897247 Msa1332050:CDS 35.0%
AGACTCAAATGGAATAAAGG+AGG + chr8_4:51897231-51897250 Msa1332050:CDS 35.0%
GACTCAAATGGAATAAAGGA+GGG + chr8_4:51897232-51897251 Msa1332050:CDS 35.0%
AGCAAGAAAAACAGAAAGTC+TGG + chr8_4:51897298-51897317 Msa1332050:CDS 35.0%
CATCCTGTTGTTGACATAAT+CGG - chr8_4:51895183-51895202 None:intergenic 35.0%
TGGAACATTAGATGATGTCT+GGG + chr8_4:51895225-51895244 Msa1332050:CDS 35.0%
! CAGGATCAATCTAGAATTGA+CGG + chr8_4:51895568-51895587 Msa1332050:CDS 35.0%
! TTCACTGTATGTCTCTAGAA+GGG + chr8_4:51895611-51895630 Msa1332050:CDS 35.0%
CTTTAACAGCAAAGTTGAAG+CGG + chr8_4:51895684-51895703 Msa1332050:CDS 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG + chr8_4:51895721-51895740 Msa1332050:intron 35.0%
AGCAAACAAAATCATACCAC+AGG - chr8_4:51895974-51895993 None:intergenic 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG + chr8_4:51895987-51896006 Msa1332050:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG + chr8_4:51895988-51896007 Msa1332050:intron 35.0%
TGTCATGTAGACATAGAGAT+AGG + chr8_4:51896041-51896060 Msa1332050:intron 35.0%
ACAACCAAATGTGTGACATT+AGG - chr8_4:51896145-51896164 None:intergenic 35.0%
! TAATGGACATGAACAGATTG+TGG + chr8_4:51896235-51896254 Msa1332050:intron 35.0%
CCAATTGAGATGTAAGAAGA+CGG - chr8_4:51896271-51896290 None:intergenic 35.0%
CTAGTTTCTTGAATGTCAAC+TGG + chr8_4:51896428-51896447 Msa1332050:intron 35.0%
TTCACTTATGATGAAGGCTT+TGG + chr8_4:51896493-51896512 Msa1332050:intron 35.0%
TCACTTATGATGAAGGCTTT+GGG + chr8_4:51896494-51896513 Msa1332050:intron 35.0%
AATTGCTATGATACTCGCAA+TGG + chr8_4:51896519-51896538 Msa1332050:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG + chr8_4:51896520-51896539 Msa1332050:intron 35.0%
ACTTCTTGCCTCAATTAGTA+AGG - chr8_4:51896628-51896647 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG + chr8_4:51896737-51896756 Msa1332050:CDS 35.0%
CAGAGTTAAAGCAAGCAATA+AGG - chr8_4:51896782-51896801 None:intergenic 35.0%
AGATTAAAGAAGCAGAAGAG+AGG + chr8_4:51896873-51896892 Msa1332050:CDS 35.0%
ATTGAAGTCGATGAATGAGA+GGG + chr8_4:51897050-51897069 Msa1332050:CDS 35.0%
GTCAGACTCAAATGGAATAA+AGG + chr8_4:51897228-51897247 Msa1332050:CDS 35.0%
AGACTCAAATGGAATAAAGG+AGG + chr8_4:51897231-51897250 Msa1332050:CDS 35.0%
GACTCAAATGGAATAAAGGA+GGG + chr8_4:51897232-51897251 Msa1332050:CDS 35.0%
AGCAAGAAAAACAGAAAGTC+TGG + chr8_4:51897298-51897317 Msa1332050:CDS 35.0%
!!! GGTTTTATTGGTAATGCACG+TGG + chr8_4:51895092-51895111 Msa1332050:intron 40.0%
GTGGAACATTAGATGATGTC+TGG + chr8_4:51895224-51895243 Msa1332050:CDS 40.0%
GTCTGGGTTTGTATGATTTG+TGG + chr8_4:51895241-51895260 Msa1332050:CDS 40.0%
ATTTGTGGATTTGTCGGATG+TGG + chr8_4:51895256-51895275 Msa1332050:CDS 40.0%
CAGGGAAGACTTTAATGCTA+TGG + chr8_4:51895411-51895430 Msa1332050:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG + chr8_4:51895458-51895477 Msa1332050:CDS 40.0%
! TTATGTCCATCGACTGAATC+AGG + chr8_4:51895549-51895568 Msa1332050:CDS 40.0%
ATTGATCCTGATTCAGTCGA+TGG - chr8_4:51895558-51895577 None:intergenic 40.0%
GTTCACTGTATGTCTCTAGA+AGG + chr8_4:51895610-51895629 Msa1332050:CDS 40.0%
! TCACTGTATGTCTCTAGAAG+GGG + chr8_4:51895612-51895631 Msa1332050:CDS 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG + chr8_4:51895728-51895747 Msa1332050:intron 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG + chr8_4:51895729-51895748 Msa1332050:intron 40.0%
CTATGTCTACATGACAGTAC+AGG - chr8_4:51896037-51896056 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG - chr8_4:51896111-51896130 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG + chr8_4:51896138-51896157 Msa1332050:intron 40.0%
CCGTCTTCTTACATCTCAAT+TGG + chr8_4:51896268-51896287 Msa1332050:CDS 40.0%
CATTCTGCCCTTAGGTTAAT+CGG + chr8_4:51896816-51896835 Msa1332050:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG - chr8_4:51896826-51896845 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG - chr8_4:51896827-51896846 None:intergenic 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG + chr8_4:51896879-51896898 Msa1332050:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG + chr8_4:51897049-51897068 Msa1332050:CDS 40.0%
ATACCTGTTCCTCCAAATCA+AGG - chr8_4:51897077-51897096 None:intergenic 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG - chr8_4:51897292-51897311 None:intergenic 40.0%
AAAACAGAAAGTCTGGTCGA+AGG + chr8_4:51897305-51897324 Msa1332050:CDS 40.0%
!!! GGTTTTATTGGTAATGCACG+TGG + chr8_4:51895092-51895111 Msa1332050:intron 40.0%
GTGGAACATTAGATGATGTC+TGG + chr8_4:51895224-51895243 Msa1332050:CDS 40.0%
GTCTGGGTTTGTATGATTTG+TGG + chr8_4:51895241-51895260 Msa1332050:CDS 40.0%
ATTTGTGGATTTGTCGGATG+TGG + chr8_4:51895256-51895275 Msa1332050:CDS 40.0%
CAGGGAAGACTTTAATGCTA+TGG + chr8_4:51895411-51895430 Msa1332050:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG + chr8_4:51895458-51895477 Msa1332050:CDS 40.0%
! TTATGTCCATCGACTGAATC+AGG + chr8_4:51895549-51895568 Msa1332050:CDS 40.0%
ATTGATCCTGATTCAGTCGA+TGG - chr8_4:51895558-51895577 None:intergenic 40.0%
GTTCACTGTATGTCTCTAGA+AGG + chr8_4:51895610-51895629 Msa1332050:CDS 40.0%
! TCACTGTATGTCTCTAGAAG+GGG + chr8_4:51895612-51895631 Msa1332050:CDS 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG + chr8_4:51895728-51895747 Msa1332050:intron 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG + chr8_4:51895729-51895748 Msa1332050:intron 40.0%
CTATGTCTACATGACAGTAC+AGG - chr8_4:51896037-51896056 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG - chr8_4:51896111-51896130 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG + chr8_4:51896138-51896157 Msa1332050:intron 40.0%
CCGTCTTCTTACATCTCAAT+TGG + chr8_4:51896268-51896287 Msa1332050:CDS 40.0%
CATTCTGCCCTTAGGTTAAT+CGG + chr8_4:51896816-51896835 Msa1332050:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG - chr8_4:51896826-51896845 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG - chr8_4:51896827-51896846 None:intergenic 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG + chr8_4:51896879-51896898 Msa1332050:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG + chr8_4:51897049-51897068 Msa1332050:CDS 40.0%
ATACCTGTTCCTCCAAATCA+AGG - chr8_4:51897077-51897096 None:intergenic 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG - chr8_4:51897292-51897311 None:intergenic 40.0%
AAAACAGAAAGTCTGGTCGA+AGG + chr8_4:51897305-51897324 Msa1332050:CDS 40.0%
! CTGCCGATTATGTCAACAAC+AGG + chr8_4:51895177-51895196 Msa1332050:CDS 45.0%
TAGAATTGACGGCAAGTCGA+AGG + chr8_4:51895579-51895598 Msa1332050:CDS 45.0%
TTGAAGCGGTATGTTTCTCG+TGG + chr8_4:51895698-51895717 Msa1332050:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG + chr8_4:51895858-51895877 Msa1332050:intron 45.0%
AAATCATACCACAGGTGCAC+AGG - chr8_4:51895966-51895985 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG + chr8_4:51896002-51896021 Msa1332050:intron 45.0%
CTTCTCCACTGCTTCAGATA+CGG - chr8_4:51896664-51896683 None:intergenic 45.0%
AGACACTTCATTCTGCCCTT+AGG + chr8_4:51896808-51896827 Msa1332050:intron 45.0%
GAATGAGAGGGTCCTTGATT+TGG + chr8_4:51897062-51897081 Msa1332050:CDS 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG - chr8_4:51897286-51897305 None:intergenic 45.0%
! CTGCCGATTATGTCAACAAC+AGG + chr8_4:51895177-51895196 Msa1332050:CDS 45.0%
TAGAATTGACGGCAAGTCGA+AGG + chr8_4:51895579-51895598 Msa1332050:CDS 45.0%
TTGAAGCGGTATGTTTCTCG+TGG + chr8_4:51895698-51895717 Msa1332050:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG + chr8_4:51895858-51895877 Msa1332050:intron 45.0%
AAATCATACCACAGGTGCAC+AGG - chr8_4:51895966-51895985 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG + chr8_4:51896002-51896021 Msa1332050:intron 45.0%
CTTCTCCACTGCTTCAGATA+CGG - chr8_4:51896664-51896683 None:intergenic 45.0%
AGACACTTCATTCTGCCCTT+AGG + chr8_4:51896808-51896827 Msa1332050:intron 45.0%
GAATGAGAGGGTCCTTGATT+TGG + chr8_4:51897062-51897081 Msa1332050:CDS 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG - chr8_4:51897286-51897305 None:intergenic 45.0%
GTGGATTTGTCGGATGTGGA+AGG + chr8_4:51895260-51895279 Msa1332050:CDS 50.0%
AACAAAAGCCTGTGCACCTG+TGG + chr8_4:51895955-51895974 Msa1332050:intron 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG + chr8_4:51896656-51896675 Msa1332050:CDS 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG + chr8_4:51896662-51896681 Msa1332050:CDS 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG + chr8_4:51897065-51897084 Msa1332050:CDS 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG + chr8_4:51897071-51897090 Msa1332050:CDS 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG + chr8_4:51897308-51897327 Msa1332050:CDS 50.0%
GTGGATTTGTCGGATGTGGA+AGG + chr8_4:51895260-51895279 Msa1332050:CDS 50.0%
AACAAAAGCCTGTGCACCTG+TGG + chr8_4:51895955-51895974 Msa1332050:intron 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG + chr8_4:51896656-51896675 Msa1332050:CDS 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG + chr8_4:51896662-51896681 Msa1332050:CDS 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG + chr8_4:51897065-51897084 Msa1332050:CDS 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG + chr8_4:51897071-51897090 Msa1332050:CDS 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG + chr8_4:51897308-51897327 Msa1332050:CDS 50.0%
GTGGAGAAGGCTGCAACTTC+TGG + chr8_4:51896675-51896694 Msa1332050:CDS 55.0%
GGAGGGAACAGTCTTACCAG+TGG + chr8_4:51897249-51897268 Msa1332050:CDS 55.0%
GAAGGTTGCTCATGAGCCAC+TGG - chr8_4:51897268-51897287 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG + chr8_4:51897271-51897290 Msa1332050:CDS 55.0%
GTGGAGAAGGCTGCAACTTC+TGG + chr8_4:51896675-51896694 Msa1332050:CDS 55.0%
GGAGGGAACAGTCTTACCAG+TGG + chr8_4:51897249-51897268 Msa1332050:CDS 55.0%
GAAGGTTGCTCATGAGCCAC+TGG - chr8_4:51897268-51897287 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG + chr8_4:51897271-51897290 Msa1332050:CDS 55.0%
GGCTGCAACTTCTGGCATGC+TGG + chr8_4:51896683-51896702 Msa1332050:CDS 60.0%
GGCTGCAACTTCTGGCATGC+TGG + chr8_4:51896683-51896702 Msa1332050:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51895090 51897336 51895090 ID=Msa1332050;Name=Msa1332050
chr8_4 mRNA 51895090 51897336 51895090 ID=Msa1332050-mRNA-1;Parent=Msa1332050;Name=Msa1332050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.87|1|1|8|0|283
chr8_4 exon 51895090 51895101 51895090 ID=Msa1332050-mRNA-1:exon:15436;Parent=Msa1332050-mRNA-1
chr8_4 exon 51895175 51895281 51895175 ID=Msa1332050-mRNA-1:exon:15437;Parent=Msa1332050-mRNA-1
chr8_4 exon 51895450 51895705 51895450 ID=Msa1332050-mRNA-1:exon:15438;Parent=Msa1332050-mRNA-1
chr8_4 exon 51896251 51896304 51896251 ID=Msa1332050-mRNA-1:exon:15439;Parent=Msa1332050-mRNA-1
chr8_4 exon 51896615 51896758 51896615 ID=Msa1332050-mRNA-1:exon:15440;Parent=Msa1332050-mRNA-1
chr8_4 exon 51896830 51896894 51896830 ID=Msa1332050-mRNA-1:exon:15441;Parent=Msa1332050-mRNA-1
chr8_4 exon 51897038 51897092 51897038 ID=Msa1332050-mRNA-1:exon:15442;Parent=Msa1332050-mRNA-1
chr8_4 exon 51897178 51897336 51897178 ID=Msa1332050-mRNA-1:exon:15443;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51895090 51895101 51895090 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51895175 51895281 51895175 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51895450 51895705 51895450 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51896251 51896304 51896251 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51896615 51896758 51896615 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51896830 51896894 51896830 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51897038 51897092 51897038 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
chr8_4 CDS 51897178 51897336 51897178 ID=Msa1332050-mRNA-1:cds;Parent=Msa1332050-mRNA-1
Gene Sequence

>Msa1332050

CTGGTTTTATTGGTCTGCCGATTATGTCAACAACAGGATGAGAAGCCAACTTGTTTTATTTGTGGAACATTAGATGATGTCTGGGTTTGTATGATTTGTGGATTTGTCGGATGTGGAAGATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAGAACACAACAAATTTGGGATTATGTGGGTGACAATTATGTCCATCGACTGAATCAGGATCAATCTAGAATTGACGGCAAGTCGAAGGAGATGCATGTTCACTGTATGTCTCTAGAAGGGGATTGTGACACATGTGAATGTAGTGAAGATTTAGAAGTTAATGGGGCCTTCTTTAACAGCAAAGTTGAAGCGATTGTGGATGAATACAACCGTCTTCTTACATCTCAATTGGAGACTCAAAGACAATATTATGAATCCTTACTAATTGAGGCAAGAAGTAAAGAAGAAAGCTCCGTATCTGAAGCAGTGGAGAAGGCTGCAACTTCTGGCATGCTGGATATCCAAAATGAACTAGAAAAGTGTACAGAAGAAAGAAATGTTGTTGCTGAGGTTAATCGGAAGCTCATTAAAAATTCAGAAATGTGGCGAAAGAAGATTAAAGAAGCAGAAGAGAGGGAAGCTACATCATTGAAGTCGATGAATGAGAGGGTCCTTGATTTGGAGGAACAGATAAGAGATATCACGATTTTTCTACAAGCACAAAAAACAATTGATAAAATGTCAGACTCAAATGGAATAAAGGAGGGAACAGTCTTACCAGTGGCTCATGAGCAACCTTCTCCTGGAAACAGCAAGAAAAACAGAAAGTCTGGTCGAAGGCGGCGTTAG

Protein sequence

>Msa1332050

LVLLVCRLCQQQDEKPTCFICGTLDDVWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFRTQQIWDYVGDNYVHRLNQDQSRIDGKSKEMHVHCMSLEGDCDTCECSEDLEVNGAFFNSKVEAIVDEYNRLLTSQLETQRQYYESLLIEARSKEESSVSEAVEKAATSGMLDIQNELEKCTEERNVVAEVNRKLIKNSEMWRKKIKEAEEREATSLKSMNERVLDLEEQIRDITIFLQAQKTIDKMSDSNGIKEGTVLPVAHEQPSPGNSKKNRKSGRRRR*