AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450450 MtrunA17_Chr3g0117261 93.125 480 30 1 15 491 16 495 0.0 930
Msa0450450 MtrunA17_Chr7g0268031 27.619 315 148 12 7 300 197 452 3.54e-19 90.5
Msa0450450 MtrunA17_Chr3g0132281 24.422 303 155 14 12 296 132 378 5.68e-15 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450450 AT5G63080.1 55.414 471 183 6 8 473 3 451 0.0 523
Msa0450450 AT5G06550.1 25.617 324 152 14 14 316 194 449 1.73e-14 76.3
Msa0450450 AT1G78280.1 23.203 306 155 11 12 296 125 371 2.16e-13 73.6

Find 137 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATCTGGTCTGTATAAA+AGG 0.128368 3_3:-35871776 Msa0450450:three_prime_UTR
ATACCCATTAGTATTAATTT+TGG 0.199143 3_3:+35876069 None:intergenic
TGTAACTTATGCAGACTATT+TGG 0.218231 3_3:-35873890 Msa0450450:intron
AATGAGCTTTGACCAATAAT+TGG 0.230443 3_3:+35871865 None:intergenic
TTGTATTGTTTACCAATTAT+TGG 0.241110 3_3:-35871877 Msa0450450:three_prime_UTR
GTATCATCAAGTTCATAATT+TGG 0.246758 3_3:-35873817 Msa0450450:intron
CACTTGTTCTGGCAGGATCT+TGG 0.254470 3_3:-35874502 Msa0450450:intron
GTGCTGCTTTGCTATATATA+TGG 0.271036 3_3:-35872956 Msa0450450:CDS
CTCAAAATCAGAGGACAAAT+TGG 0.271585 3_3:+35872715 None:intergenic
TCAATGCCTATAACCTTTCT+TGG 0.293305 3_3:-35873590 Msa0450450:CDS
ACTGATTGGGTTACACCTAA+TGG 0.293546 3_3:-35875901 Msa0450450:CDS
AGTGGTGTTAACTGGATTAA+TGG 0.294120 3_3:-35875944 Msa0450450:CDS
GTTATGTATGCTACATATTC+TGG 0.294875 3_3:+35874769 None:intergenic
CATCAACAACATCAAAATAA+AGG 0.300767 3_3:-35876043 Msa0450450:CDS
TTTGTTTATATGGGAGTTAA+AGG 0.310574 3_3:-35874634 Msa0450450:intron
AATACCAAAATTAATACTAA+TGG 0.314299 3_3:-35876073 Msa0450450:exon
AACAAACCAGTGGTGTTAAC+TGG 0.321042 3_3:-35875952 Msa0450450:CDS
TGAATTTGTTGATAGATATA+TGG 0.323277 3_3:-35875980 Msa0450450:CDS
CTTTAAATATTGCGTCTATT+AGG 0.325382 3_3:-35872883 Msa0450450:CDS
TTGCTTTCCTCTGGTACATC+TGG 0.334996 3_3:-35872270 Msa0450450:three_prime_UTR
ATAAATTTGATGAGGTCTTC+AGG 0.341372 3_3:+35872623 None:intergenic
GGAGTTTGGTTGGCGTATAA+AGG 0.357026 3_3:-35872093 Msa0450450:three_prime_UTR
GATGTCTTCAATGTATTCCT+TGG 0.357631 3_3:+35873430 None:intergenic
GTTCAGTGCAGTAATGAAAA+TGG 0.363737 3_3:-35875443 Msa0450450:CDS
CTGGATTAATGGATCATCAT+TGG 0.366707 3_3:-35875933 Msa0450450:CDS
AAACTTGAGAGAAAGCAAAA+AGG 0.367614 3_3:-35876128 Msa0450450:five_prime_UTR
GAGTGCTTCATTGGTTGATT+TGG 0.369774 3_3:-35872693 Msa0450450:CDS
TACCACCCAAGAAAGGTTAT+AGG 0.377980 3_3:+35873584 None:intergenic
ATTGGAGAGCTTCCACTGAT+TGG 0.381303 3_3:-35875915 Msa0450450:CDS
CAATGCCTATAACCTTTCTT+GGG 0.382210 3_3:-35873589 Msa0450450:CDS
TGACAGTGACCAGCAAAATA+AGG 0.385417 3_3:-35874680 Msa0450450:CDS
ATGAGTTCCTTGCTTTCCTC+TGG 0.393252 3_3:-35872279 Msa0450450:three_prime_UTR
AGACGATGACATGCACGAAA+TGG 0.397359 3_3:+35872402 None:intergenic
AGACAATACCGTCGCAGAGC+TGG 0.401710 3_3:-35872600 Msa0450450:CDS
TTCTGACTGCACTTGAAGTT+GGG 0.415244 3_3:-35872504 Msa0450450:three_prime_UTR
TTGGAGAGCTTCCACTGATT+GGG 0.421960 3_3:-35875914 Msa0450450:CDS
ATACCAAAATTAATACTAAT+GGG 0.424797 3_3:-35876072 Msa0450450:exon
ATCAACAACATCAAAATAAA+GGG 0.427273 3_3:-35876042 Msa0450450:CDS
AAACACGTGCATGCTCTAGA+AGG 0.428150 3_3:-35872842 Msa0450450:CDS
CTGCAGAACCCTCAACTTCA+AGG 0.428740 3_3:+35875465 None:intergenic
TTTCATTTCATACTTTGCCT+TGG 0.431384 3_3:-35872987 Msa0450450:CDS
CTGTACCGTATTTGAAGGAT+TGG 0.436080 3_3:-35875397 Msa0450450:CDS
TTTGTGTATGTTCCAGCTGT+TGG 0.436277 3_3:-35872212 Msa0450450:three_prime_UTR
ATTCTGACTGCACTTGAAGT+TGG 0.436469 3_3:-35872505 Msa0450450:three_prime_UTR
GAGAAATTGAGAAGGTGAAC+GGG 0.436671 3_3:-35876020 Msa0450450:CDS
TTGCAACAAATGAGTATGAA+TGG 0.440370 3_3:-35872041 Msa0450450:three_prime_UTR
CAATATCTATAAACCACAAT+TGG 0.441545 3_3:-35873614 Msa0450450:CDS
TTGCATTAGTGAGAGGAGTT+TGG 0.445987 3_3:-35872107 Msa0450450:three_prime_UTR
TAGGAGAGGTCAATTAAAGA+TGG 0.451225 3_3:+35872358 None:intergenic
AGGAGAGGTCAATTAAAGAT+GGG 0.451228 3_3:+35872359 None:intergenic
TTGTGTATGTTCCAGCTGTT+GGG 0.452852 3_3:-35872211 Msa0450450:three_prime_UTR
TGATTATCTTATCAACCATC+TGG 0.453094 3_3:-35871789 Msa0450450:three_prime_UTR
TTGGTTGATTTGGTGGGACT+CGG 0.453555 3_3:-35872683 Msa0450450:CDS
GACGATGACATGCACGAAAT+GGG 0.455087 3_3:+35872403 None:intergenic
CATGCCTGTCAAACACGAAA+TGG 0.455876 3_3:+35874387 None:intergenic
CTCAATTTACCACCCAAGAA+AGG 0.458313 3_3:+35873577 None:intergenic
GAAAATGAAGGCCCAACAGC+TGG 0.463770 3_3:+35872200 None:intergenic
ATACTTTGCCTTGGCCAACT+TGG 0.465254 3_3:-35872978 Msa0450450:CDS
TGTGTCTGTACCGTATTTGA+AGG 0.465358 3_3:-35875402 Msa0450450:CDS
CAGCAAGGTTGCGCTGGCAG+AGG 0.468001 3_3:+35873381 None:intergenic
ATATGTTGTTAAAGATAAGT+AGG 0.468382 3_3:+35872339 None:intergenic
TGCTTCATTGGTTGATTTGG+TGG 0.472657 3_3:-35872690 Msa0450450:CDS
ACCATCTGGTCTGTATAAAA+GGG 0.475221 3_3:-35871775 Msa0450450:three_prime_UTR
AAGGCTTCAATGAAGAGTCT+TGG 0.483919 3_3:+35871975 None:intergenic
TGAACGTTGCCTTGAAGTTG+AGG 0.484615 3_3:-35875474 Msa0450450:CDS
GACAATACCGTCGCAGAGCT+GGG 0.485971 3_3:-35872599 Msa0450450:CDS
AATTTGTGAACTGCGGTAGC+TGG 0.491644 3_3:+35872480 None:intergenic
TTGGTTGGCGTATAAAGGAT+TGG 0.492440 3_3:-35872088 Msa0450450:three_prime_UTR
TTCTAAATTCTGCATGCAGG+TGG 0.497798 3_3:-35872768 Msa0450450:CDS
TGTTAGCAGCAAGGTTGCGC+TGG 0.499674 3_3:+35873375 None:intergenic
GCTTCATTGGTTGATTTGGT+GGG 0.500949 3_3:-35872689 Msa0450450:CDS
AATGAAAATGGTTCAAGTAA+TGG 0.504999 3_3:-35875431 Msa0450450:CDS
AAATGCCAATCCTTCAAATA+CGG 0.505177 3_3:+35875392 None:intergenic
TGTCAAACACGAAATGGCAC+TGG 0.510078 3_3:+35874393 None:intergenic
GAACGTTGCCTTGAAGTTGA+GGG 0.513815 3_3:-35875473 Msa0450450:CDS
TTAGAATGCACACAAGAAGC+AGG 0.515116 3_3:-35873867 Msa0450450:CDS
GAAATGGGTGGTAACTAGTA+AGG 0.515699 3_3:+35872418 None:intergenic
ATACAGATGACTCCATGTTA+AGG 0.518181 3_3:+35872573 None:intergenic
TGTGGGCACAAAGAAAATGA+AGG 0.518922 3_3:+35872188 None:intergenic
TATAGGCATTGAACCAATTG+TGG 0.520435 3_3:+35873601 None:intergenic
CATTCTTGTCTCATAAGATC+AGG 0.522943 3_3:+35872444 None:intergenic
CGCAACCTTGCTGCTAACAC+AGG 0.526358 3_3:-35873371 Msa0450450:intron
TCATATTTGTTCCCAGTGGA+TGG 0.526700 3_3:-35873839 Msa0450450:CDS
ATTAATCCAGTTAACACCAC+TGG 0.527498 3_3:+35875946 None:intergenic
AACTTGATGATACCATCCAC+TGG 0.531578 3_3:+35873827 None:intergenic
TTGAAAAGTTGAAATCAAAG+AGG 0.539315 3_3:+35872236 None:intergenic
GGAATACATTGAAGACATCA+AGG 0.541622 3_3:-35873426 Msa0450450:CDS
GCACTTGATAGTTGAGTGGT+TGG 0.544402 3_3:-35871938 Msa0450450:three_prime_UTR
AAATATTGCGTCTATTAGGA+AGG 0.550115 3_3:-35872879 Msa0450450:CDS
AAGCAGCACCAAGTTGGCCA+AGG 0.555336 3_3:+35872970 None:intergenic
TACTCTTGACAAACTTTCAG+TGG 0.558191 3_3:+35872919 None:intergenic
TAAACAATACAACATTATGT+TGG 0.567094 3_3:+35871888 None:intergenic
GTCAAACACGAAATGGCACT+GGG 0.569616 3_3:+35874394 None:intergenic
GGAGAGGTCAATTAAAGATG+GGG 0.573616 3_3:+35872360 None:intergenic
TGCCTATAACCTTTCTTGGG+TGG 0.577403 3_3:-35873586 Msa0450450:intron
ATGTCTGTGGAAAGAAGAGA+TGG 0.577930 3_3:-35874433 Msa0450450:CDS
GGAGAAATTGAGAAGGTGAA+CGG 0.580825 3_3:-35876021 Msa0450450:CDS
TCTAAATTCTGCATGCAGGT+GGG 0.581693 3_3:-35872767 Msa0450450:CDS
CTGTGCACTTGATAGTTGAG+TGG 0.583204 3_3:-35871942 Msa0450450:three_prime_UTR
ATTAGTGAGAGGAGTTTGGT+TGG 0.587641 3_3:-35872103 Msa0450450:three_prime_UTR
AGATGTACCAGAGGAAAGCA+AGG 0.596985 3_3:+35872272 None:intergenic
AACACGAAATGGCACTGGGA+AGG 0.599724 3_3:+35874398 None:intergenic
ATGGTTGATAAGATAATCAG+AGG 0.600064 3_3:+35871793 None:intergenic
AAGTGCATTGCATTAGTGAG+AGG 0.600950 3_3:-35872114 Msa0450450:three_prime_UTR
ATTAAAGAGAAGTATAAATG+TGG 0.601862 3_3:+35872300 None:intergenic
GAGCGACTACAATGAGGCCA+AGG 0.603057 3_3:-35873447 Msa0450450:CDS
TAGAATGCACACAAGAAGCA+GGG 0.604713 3_3:-35873866 Msa0450450:CDS
AAATTACATAACAACATACA+AGG 0.604880 3_3:+35871912 None:intergenic
AATTGAGAAGGTGAACGGGA+AGG 0.605761 3_3:-35876016 Msa0450450:CDS
AAGGTCGCCCAGCTCTGCGA+CGG 0.606124 3_3:+35872592 None:intergenic
CTGCACCTGTGTTAGCAGCA+AGG 0.608778 3_3:+35873366 None:intergenic
CAATTAAAGATGGGGTGATG+AGG 0.611516 3_3:+35872368 None:intergenic
AACACGTGCATGCTCTAGAA+GGG 0.614914 3_3:-35872841 Msa0450450:CDS
TAAAGGATTGGTGACAGTCA+CGG 0.618037 3_3:-35872076 Msa0450450:three_prime_UTR
AGAGCTGGGCGACCTTAACA+TGG 0.618534 3_3:-35872585 Msa0450450:CDS
ATAGCAAAGCAGCACCAAGT+TGG 0.619753 3_3:+35872964 None:intergenic
ATTAGGTGTAACCCAATCAG+TGG 0.622628 3_3:+35875903 None:intergenic
AGCTGGTCAGCAAATGTCTG+TGG 0.623034 3_3:-35874446 Msa0450450:CDS
TTGTTAAAGATAAGTAGGAG+AGG 0.625215 3_3:+35872344 None:intergenic
TATTGTCTATAAATTTGATG+AGG 0.630189 3_3:+35872615 None:intergenic
ATGCAGAATTTAGAAAACCT+AGG 0.631755 3_3:+35872776 None:intergenic
GAGTTAAAATTTGTGAACTG+CGG 0.636066 3_3:+35872473 None:intergenic
TCTTGTCTCATAAGATCAGG+TGG 0.639541 3_3:+35872447 None:intergenic
CTGAAAACATCAGCATGTAG+AGG 0.641625 3_3:+35874476 None:intergenic
TGAAGCACTCTCAAAATCAG+AGG 0.642152 3_3:+35872706 None:intergenic
GTATCTGACTCAAAATACCC+TGG 0.643979 3_3:-35873998 Msa0450450:CDS
AATAAAGGGAGAAATTGAGA+AGG 0.646492 3_3:-35876028 Msa0450450:CDS
ACTTGATGATACCATCCACT+GGG 0.651707 3_3:+35873828 None:intergenic
AGAATGCACACAAGAAGCAG+GGG 0.665619 3_3:-35873865 Msa0450450:CDS
GAAATCATATTTGTTCCCAG+TGG 0.671903 3_3:-35873843 Msa0450450:CDS
TGGTTGATAAGATAATCAGA+GGG 0.681821 3_3:+35871794 None:intergenic
GATGACATGCACGAAATGGG+TGG 0.694555 3_3:+35872406 None:intergenic
TGAACAGCCAGATGTACCAG+AGG 0.701049 3_3:+35872263 None:intergenic
CAATCATCACAAAAGTACGT+TGG 0.708793 3_3:+35874745 None:intergenic
TATGGACAAGAACAAACCAG+TGG 0.727874 3_3:-35875962 Msa0450450:CDS
TCTTGGAATGAGAAACTCAG+CGG 0.751584 3_3:+35871992 None:intergenic
AGGGACTCATGATTGCATCG+TGG 0.769193 3_3:-35872822 Msa0450450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAAAAATTTCAATTTAA+GGG - chr3_3:35872529-35872548 Msa0450450:three_prime_UTR 10.0%
!! TAAAAATAAAAAATAGATGT+TGG - chr3_3:35873490-35873509 Msa0450450:intron 10.0%
!! AAAAATAAAAAATAGATGTT+GGG - chr3_3:35873491-35873510 Msa0450450:intron 10.0%
!! AAAATAAAGCATAAATATAA+CGG + chr3_3:35874054-35874073 None:intergenic 10.0%
!!! AAAATATTTTCTTCTATAAA+GGG + chr3_3:35874101-35874120 None:intergenic 10.0%
!!! TTAAATTATTGTTTTAGATA+AGG - chr3_3:35875976-35875995 Msa0450450:CDS 10.0%
!! AATACCAAAATTAATACTAA+TGG - chr3_3:35871747-35871766 Msa0450450:three_prime_UTR 15.0%
!! ATACCAAAATTAATACTAAT+GGG - chr3_3:35871748-35871767 Msa0450450:three_prime_UTR 15.0%
!! TTGAATGATTATAATTGATT+AGG - chr3_3:35872060-35872079 Msa0450450:three_prime_UTR 15.0%
!! ATTATAATTGATTAGGAAAA+AGG - chr3_3:35872067-35872086 Msa0450450:three_prime_UTR 15.0%
!! TTATAATTGATTAGGAAAAA+GGG - chr3_3:35872068-35872087 Msa0450450:three_prime_UTR 15.0%
!! GTTGTAAAAATTTCAATTTA+AGG - chr3_3:35872528-35872547 Msa0450450:three_prime_UTR 15.0%
!! TGTAAAAATTTCAATTTAAG+GGG - chr3_3:35872530-35872549 Msa0450450:three_prime_UTR 15.0%
!! GTTAGAAAAAATATATTACT+TGG + chr3_3:35873017-35873036 None:intergenic 15.0%
!! AAAAGTCATTAATTTCAATT+AGG + chr3_3:35873469-35873488 None:intergenic 15.0%
!!! AATATCATCTATAGAAATTT+TGG + chr3_3:35873615-35873634 None:intergenic 15.0%
!!! TATTTATGCTTTATTTTCAA+AGG - chr3_3:35874057-35874076 Msa0450450:intron 15.0%
!!! AAATATTTTCTTCTATAAAG+GGG + chr3_3:35874100-35874119 None:intergenic 15.0%
!!! CAAAATATTTTCTTCTATAA+AGG + chr3_3:35874102-35874121 None:intergenic 15.0%
!! CATCTTATATTCATTATTTA+AGG - chr3_3:35874544-35874563 Msa0450450:intron 15.0%
!!! ATACCCATTAGTATTAATTT+TGG + chr3_3:35871754-35871773 None:intergenic 20.0%
!! ATCAACAACATCAAAATAAA+GGG - chr3_3:35871778-35871797 Msa0450450:three_prime_UTR 20.0%
!!! TGAATTTGTTGATAGATATA+TGG - chr3_3:35871840-35871859 Msa0450450:three_prime_UTR 20.0%
!! TTGAAGAAAAATTGAAGATT+AGG + chr3_3:35871949-35871968 None:intergenic 20.0%
!!! CAATTTTTCTTCAATCATTT+TGG - chr3_3:35871955-35871974 Msa0450450:three_prime_UTR 20.0%
!! TATAATTGATTAGGAAAAAG+GGG - chr3_3:35872069-35872088 Msa0450450:three_prime_UTR 20.0%
!!! TTTTGAAAATTTGGTTGTTT+TGG - chr3_3:35872122-35872141 Msa0450450:three_prime_UTR 20.0%
!!! TTTGAAAATTTGGTTGTTTT+GGG - chr3_3:35872123-35872142 Msa0450450:three_prime_UTR 20.0%
!!! AAATTTTTTGTGGTTCTTTA+TGG - chr3_3:35872149-35872168 Msa0450450:three_prime_UTR 20.0%
!!! AATTTTTTGTGGTTCTTTAT+GGG - chr3_3:35872150-35872169 Msa0450450:three_prime_UTR 20.0%
!! TGATTGAAAATGGAAAATAT+GGG - chr3_3:35872214-35872233 Msa0450450:three_prime_UTR 20.0%
!!! GTGATTGAAATTTTTTGTAA+TGG - chr3_3:35872251-35872270 Msa0450450:three_prime_UTR 20.0%
!!! TGAAATTTTTTGTAATGGAA+AGG - chr3_3:35872256-35872275 Msa0450450:three_prime_UTR 20.0%
!! GTAAAAATTTCAATTTAAGG+GGG - chr3_3:35872531-35872550 Msa0450450:three_prime_UTR 20.0%
!! TATTAAATTCCATTTGAACA+GGG + chr3_3:35872898-35872917 None:intergenic 20.0%
!! TTATTAAATTCCATTTGAAC+AGG + chr3_3:35872899-35872918 None:intergenic 20.0%
!!! ATATTTTTTCTAACTATTGC+AGG - chr3_3:35873023-35873042 Msa0450450:intron 20.0%
!! GGTACAATCAATATTATATT+TGG + chr3_3:35874130-35874149 None:intergenic 20.0%
!!! ATATAATATTGATTGTACCA+AGG - chr3_3:35874131-35874150 Msa0450450:intron 20.0%
!! TATTGTCTATAAATTTGATG+AGG + chr3_3:35875208-35875227 None:intergenic 20.0%
!! ATATGTTGTTAAAGATAAGT+AGG + chr3_3:35875484-35875503 None:intergenic 20.0%
!!! ATTAAAGAGAAGTATAAATG+TGG + chr3_3:35875523-35875542 None:intergenic 20.0%
!! TATATGCTGTTGAAAAAATA+TGG + chr3_3:35875678-35875697 None:intergenic 20.0%
!! AAATTACATAACAACATACA+AGG + chr3_3:35875911-35875930 None:intergenic 20.0%
!! TAAACAATACAACATTATGT+TGG + chr3_3:35875935-35875954 None:intergenic 20.0%
!! TTGTATTGTTTACCAATTAT+TGG - chr3_3:35875943-35875962 Msa0450450:CDS 20.0%
!!! AATTATTGTTTTAGATAAGG+AGG - chr3_3:35875979-35875998 Msa0450450:CDS 20.0%
!!! ATTATTGTTTTAGATAAGGA+GGG - chr3_3:35875980-35875999 Msa0450450:CDS 20.0%
! AAAGCAAAAAGGTTTATGAA+TGG - chr3_3:35871703-35871722 Msa0450450:three_prime_UTR 25.0%
! CATCAACAACATCAAAATAA+AGG - chr3_3:35871777-35871796 Msa0450450:three_prime_UTR 25.0%
!!! AAATTTTGATACCTGAACTT+TGG + chr3_3:35871986-35872005 None:intergenic 25.0%
! ATAATGACATGATTCTATTG+CGG - chr3_3:35872097-35872116 Msa0450450:three_prime_UTR 25.0%
!!! TTTTGGGTAGAAATTTTTTG+TGG - chr3_3:35872139-35872158 Msa0450450:three_prime_UTR 25.0%
! CTGATTGAAAATGGAAAATA+TGG - chr3_3:35872213-35872232 Msa0450450:three_prime_UTR 25.0%
! AATATGGGTGTCTATATATA+TGG - chr3_3:35872229-35872248 Msa0450450:three_prime_UTR 25.0%
! AATGAAAATGGTTCAAGTAA+TGG - chr3_3:35872389-35872408 Msa0450450:three_prime_UTR 25.0%
! TACAACAATCAACTATGAAA+AGG + chr3_3:35872473-35872492 None:intergenic 25.0%
! TCTGAAAATTCTATACAGAA+TGG + chr3_3:35872788-35872807 None:intergenic 25.0%
! AATGATTCTCTATGTTGAAA+AGG + chr3_3:35872939-35872958 None:intergenic 25.0%
! GACAATAATATAACATACCA+TGG + chr3_3:35872976-35872995 None:intergenic 25.0%
!!! TGACTATCGTTTTGTTTATA+TGG - chr3_3:35873176-35873195 Msa0450450:intron 25.0%
!!! GACTATCGTTTTGTTTATAT+GGG - chr3_3:35873177-35873196 Msa0450450:intron 25.0%
! TTTGTTTATATGGGAGTTAA+AGG - chr3_3:35873186-35873205 Msa0450450:intron 25.0%
!!! TTTTTTACTTTCACTTGTTC+TGG - chr3_3:35873307-35873326 Msa0450450:intron 25.0%
!!! ATCTATAGAAATTTTGGTCA+AGG + chr3_3:35873609-35873628 None:intergenic 25.0%
! CCAAAACAAAGAAAGAAAAT+GGG + chr3_3:35873649-35873668 None:intergenic 25.0%
!!! CCATTTTCTTTCTTTGTTTT+GGG - chr3_3:35873647-35873666 Msa0450450:intron 25.0%
! CTGAAAAACACACAAAAATT+TGG + chr3_3:35873682-35873701 None:intergenic 25.0%
!!! AATTTTTGTGTGTTTTTCAG+AGG - chr3_3:35873682-35873701 Msa0450450:intron 25.0%
!!! TTTTCTATAATCGTTGATTC+AGG - chr3_3:35873763-35873782 Msa0450450:intron 25.0%
!! ATTTTACCTTTTCAAAACCA+GGG + chr3_3:35873842-35873861 None:intergenic 25.0%
!! AATTTTACCTTTTCAAAACC+AGG + chr3_3:35873843-35873862 None:intergenic 25.0%
! ATAAGTTACAAATTCACTGA+AGG + chr3_3:35873920-35873939 None:intergenic 25.0%
! GTATCATCAAGTTCATAATT+TGG - chr3_3:35874003-35874022 Msa0450450:CDS 25.0%
! AATATAACGGCAATCAATAT+CGG + chr3_3:35874041-35874060 None:intergenic 25.0%
! TCAAATCATATCAAATTCCT+TGG + chr3_3:35874151-35874170 None:intergenic 25.0%
! CAATATCTATAAACCACAAT+TGG - chr3_3:35874206-35874225 Msa0450450:intron 25.0%
!! GATATATGTGATGATTTTGA+AGG - chr3_3:35874416-35874435 Msa0450450:CDS 25.0%
!!! TCATCTCAGTTACATTTTTT+AGG - chr3_3:35874636-35874655 Msa0450450:CDS 25.0%
!!! AAAAGTTGTTTTATGTGGTT+AGG + chr3_3:35874687-35874706 None:intergenic 25.0%
! CTTTAAATATTGCGTCTATT+AGG - chr3_3:35874937-35874956 Msa0450450:intron 25.0%
! TTGAAAAGTTGAAATCAAAG+AGG + chr3_3:35875587-35875606 None:intergenic 25.0%
AAACTTGAGAGAAAGCAAAA+AGG - chr3_3:35871692-35871711 Msa0450450:three_prime_UTR 30.0%
! AATGGTGAATTTTTGTGAGA+GGG - chr3_3:35871721-35871740 Msa0450450:three_prime_UTR 30.0%
AATAAAGGGAGAAATTGAGA+AGG - chr3_3:35871792-35871811 Msa0450450:three_prime_UTR 30.0%
! TGAAGATTAGGTTTTCCATT+AGG + chr3_3:35871937-35871956 None:intergenic 30.0%
TAATGACATGATTCTATTGC+GGG - chr3_3:35872098-35872117 Msa0450450:three_prime_UTR 30.0%
TCCTTTAAGCTGATTGAAAA+TGG - chr3_3:35872204-35872223 Msa0450450:three_prime_UTR 30.0%
! TCCATTTTCAATCAGCTTAA+AGG + chr3_3:35872208-35872227 None:intergenic 30.0%
TTTCACTGATCAAAAAAGAG+AGG - chr3_3:35872301-35872320 Msa0450450:three_prime_UTR 30.0%
AAATGCCAATCCTTCAAATA+CGG + chr3_3:35872431-35872450 None:intergenic 30.0%
! CTCAACTTTGATAGTAAGTT+TGG + chr3_3:35872559-35872578 None:intergenic 30.0%
CAAACTTACTATCAAAGTTG+AGG - chr3_3:35872557-35872576 Msa0450450:exon 30.0%
! GTTCAATGATTGATAACACA+GGG + chr3_3:35872843-35872862 None:intergenic 30.0%
! TGTTCAATGATTGATAACAC+AGG + chr3_3:35872844-35872863 None:intergenic 30.0%
GTTATGTATGCTACATATTC+TGG + chr3_3:35873054-35873073 None:intergenic 30.0%
TGTGGTACAAAAAGATAGAT+TGG - chr3_3:35873517-35873536 Msa0450450:intron 30.0%
TTATGTACTCTGCATTTCTA+TGG - chr3_3:35873571-35873590 Msa0450450:intron 30.0%
!! TATAGAAATTTTGGTCAAGG+TGG + chr3_3:35873606-35873625 None:intergenic 30.0%
AAACAAAGAAAGAAAATGGG+AGG + chr3_3:35873646-35873665 None:intergenic 30.0%
!! CCCATTTTCTTTCTTTGTTT+TGG - chr3_3:35873646-35873665 Msa0450450:intron 30.0%
CCCAAAACAAAGAAAGAAAA+TGG + chr3_3:35873650-35873669 None:intergenic 30.0%
!!! AAAATACCCTGGTTTTGAAA+AGG - chr3_3:35873833-35873852 Msa0450450:CDS 30.0%
CCATTAGAATTATCAGAAGA+TGG + chr3_3:35873873-35873892 None:intergenic 30.0%
CCATCTTCTGATAATTCTAA+TGG - chr3_3:35873870-35873889 Msa0450450:CDS 30.0%
TGTAACTTATGCAGACTATT+TGG - chr3_3:35873930-35873949 Msa0450450:intron 30.0%
GTTCATAATTTGGTAAGTTC+TGG - chr3_3:35874013-35874032 Msa0450450:CDS 30.0%
! GAAATTTTCATATGCTGTTG+CGG - chr3_3:35874490-35874509 Msa0450450:CDS 30.0%
ATTGGCAATAACATAATCAC+TGG - chr3_3:35874520-35874539 Msa0450450:intron 30.0%
TGAGATGATCAACTATGTAT+AGG - chr3_3:35874571-35874590 Msa0450450:intron 30.0%
GAGATGATCAACTATGTATA+GGG - chr3_3:35874572-35874591 Msa0450450:intron 30.0%
AGATGATCAACTATGTATAG+GGG - chr3_3:35874573-35874592 Msa0450450:intron 30.0%
!! GCTACAAAAGTTGTTTTATG+TGG + chr3_3:35874692-35874711 None:intergenic 30.0%
!! ACTAACTTTAGTCTTGAAAC+AGG - chr3_3:35874786-35874805 Msa0450450:intron 30.0%
!! CTAACTTTAGTCTTGAAACA+GGG - chr3_3:35874787-35874806 Msa0450450:intron 30.0%
TTTCATTTCATACTTTGCCT+TGG - chr3_3:35874833-35874852 Msa0450450:intron 30.0%
AAATATTGCGTCTATTAGGA+AGG - chr3_3:35874941-35874960 Msa0450450:intron 30.0%
GAAAAACATTTGAAGATCCT+AGG - chr3_3:35875027-35875046 Msa0450450:intron 30.0%
ATGCAGAATTTAGAAAACCT+AGG + chr3_3:35875047-35875066 None:intergenic 30.0%
ATAAATTTGATGAGGTCTTC+AGG + chr3_3:35875200-35875219 None:intergenic 30.0%
GAGTTAAAATTTGTGAACTG+CGG + chr3_3:35875350-35875369 None:intergenic 30.0%
TTGTTAAAGATAAGTAGGAG+AGG + chr3_3:35875479-35875498 None:intergenic 30.0%
! GACAAAAGTCATTCTTTTGT+GGG + chr3_3:35875652-35875671 None:intergenic 30.0%
! AGACAAAAGTCATTCTTTTG+TGG + chr3_3:35875653-35875672 None:intergenic 30.0%
TTGCAACAAATGAGTATGAA+TGG - chr3_3:35875779-35875798 Msa0450450:intron 30.0%
!!! ATGAATGGTAGTTTTGTGAA+AGG - chr3_3:35875794-35875813 Msa0450450:intron 30.0%
! AATGAGCTTTGACCAATAAT+TGG + chr3_3:35875958-35875977 None:intergenic 30.0%
!! TGGTTGATAAGATAATCAGA+GGG + chr3_3:35876029-35876048 None:intergenic 30.0%
!! ATGGTTGATAAGATAATCAG+AGG + chr3_3:35876030-35876049 None:intergenic 30.0%
TGATTATCTTATCAACCATC+TGG - chr3_3:35876031-35876050 Msa0450450:CDS 30.0%
! GAATGGTGAATTTTTGTGAG+AGG - chr3_3:35871720-35871739 Msa0450450:three_prime_UTR 35.0%
ATTAATCCAGTTAACACCAC+TGG + chr3_3:35871877-35871896 None:intergenic 35.0%
! AGTGGTGTTAACTGGATTAA+TGG - chr3_3:35871876-35871895 Msa0450450:three_prime_UTR 35.0%
! CTGGATTAATGGATCATCAT+TGG - chr3_3:35871887-35871906 Msa0450450:three_prime_UTR 35.0%
AGCTATAGAATGATGCAAGT+TGG - chr3_3:35872031-35872050 Msa0450450:three_prime_UTR 35.0%
AATTGATTAGGAAAAAGGGG+TGG - chr3_3:35872072-35872091 Msa0450450:three_prime_UTR 35.0%
!! ATTGCGGGCTTTTGAAAATT+TGG - chr3_3:35872113-35872132 Msa0450450:three_prime_UTR 35.0%
TCAAAAAAGAGAGGAGATGT+TGG - chr3_3:35872310-35872329 Msa0450450:three_prime_UTR 35.0%
GTTCAGTGCAGTAATGAAAA+TGG - chr3_3:35872377-35872396 Msa0450450:three_prime_UTR 35.0%
! ATTGGCATTTTGTCAAGGTA+TGG - chr3_3:35872441-35872460 Msa0450450:three_prime_UTR 35.0%
ATGCATGAACTTAAAACGCA+GGG - chr3_3:35872634-35872653 Msa0450450:CDS 35.0%
ACCAAAAGTGAATGGGAATT+GGG + chr3_3:35872705-35872724 None:intergenic 35.0%
AACCAAAAGTGAATGGGAAT+TGG + chr3_3:35872706-35872725 None:intergenic 35.0%
ACCAAGAACCAAAAGTGAAT+GGG + chr3_3:35872712-35872731 None:intergenic 35.0%
ATTCCATTTGAACAGGGTAA+CGG + chr3_3:35872892-35872911 None:intergenic 35.0%
GTTGAAAAGGACAAACTTTG+TGG + chr3_3:35872926-35872945 None:intergenic 35.0%
!! ATTTTGTTTCATCAGAGCCA+TGG - chr3_3:35872956-35872975 Msa0450450:CDS 35.0%
! CAATCATCACAAAAGTACGT+TGG + chr3_3:35873078-35873097 None:intergenic 35.0%
! CAACGTACTTTTGTGATGAT+TGG - chr3_3:35873076-35873095 Msa0450450:intron 35.0%
!!! AGCAGATTTCCTTATTTTGC+TGG + chr3_3:35873152-35873171 None:intergenic 35.0%
! AAAATAGATGTTGGGCATTG+TGG - chr3_3:35873499-35873518 Msa0450450:intron 35.0%
! AAAGAAAATGGGAGGTATGA+GGG + chr3_3:35873638-35873657 None:intergenic 35.0%
!! TGTGTGTTTTTCAGAGGTAA+AGG - chr3_3:35873688-35873707 Msa0450450:intron 35.0%
!! GTGTGTTTTTCAGAGGTAAA+GGG - chr3_3:35873689-35873708 Msa0450450:intron 35.0%
GAAATCATATTTGTTCCCAG+TGG - chr3_3:35873977-35873996 Msa0450450:intron 35.0%
! ATTTTCAAAGGCTTTCCTAC+AGG - chr3_3:35874069-35874088 Msa0450450:intron 35.0%
! CGTATCTCTTTTGTTCTTTC+AGG - chr3_3:35874177-35874196 Msa0450450:intron 35.0%
! ATCTCTTTTGTTCTTTCAGG+AGG - chr3_3:35874180-35874199 Msa0450450:intron 35.0%
!! TATAGGCATTGAACCAATTG+TGG + chr3_3:35874222-35874241 None:intergenic 35.0%
TCAATGCCTATAACCTTTCT+TGG - chr3_3:35874230-35874249 Msa0450450:intron 35.0%
CAATGCCTATAACCTTTCTT+GGG - chr3_3:35874231-35874250 Msa0450450:intron 35.0%
! AACTTTTCATGCTATGACAG+TGG - chr3_3:35874339-35874358 Msa0450450:intron 35.0%
GATGTCTTCAATGTATTCCT+TGG + chr3_3:35874393-35874412 None:intergenic 35.0%
GGAATACATTGAAGACATCA+AGG - chr3_3:35874394-35874413 Msa0450450:intron 35.0%
ATGCTTTGACTGATTGCATA+AGG - chr3_3:35874760-35874779 Msa0450450:CDS 35.0%
!! GTGCTGCTTTGCTATATATA+TGG - chr3_3:35874864-35874883 Msa0450450:intron 35.0%
TACTCTTGACAAACTTTCAG+TGG + chr3_3:35874904-35874923 None:intergenic 35.0%
! GTTTTCTAAATTCTGCATGC+AGG - chr3_3:35875049-35875068 Msa0450450:intron 35.0%
CTCAAAATCAGAGGACAAAT+TGG + chr3_3:35875108-35875127 None:intergenic 35.0%
!!! TGATTTTGAGAGTGCTTCAT+TGG - chr3_3:35875118-35875137 Msa0450450:intron 35.0%
ATACAGATGACTCCATGTTA+AGG + chr3_3:35875250-35875269 None:intergenic 35.0%
CATTCTTGTCTCATAAGATC+AGG + chr3_3:35875379-35875398 None:intergenic 35.0%
AGGAGAGGTCAATTAAAGAT+GGG + chr3_3:35875464-35875483 None:intergenic 35.0%
TAGGAGAGGTCAATTAAAGA+TGG + chr3_3:35875465-35875484 None:intergenic 35.0%
AGTGCACAGTAGCATAAAAA+AGG + chr3_3:35875867-35875886 None:intergenic 35.0%
AACCATCTGGTCTGTATAAA+AGG - chr3_3:35876044-35876063 Msa0450450:CDS 35.0%
ACCATCTGGTCTGTATAAAA+GGG - chr3_3:35876045-35876064 Msa0450450:CDS 35.0%
GGAGAAATTGAGAAGGTGAA+CGG - chr3_3:35871799-35871818 Msa0450450:three_prime_UTR 40.0%
GAGAAATTGAGAAGGTGAAC+GGG - chr3_3:35871800-35871819 Msa0450450:three_prime_UTR 40.0%
TATGGACAAGAACAAACCAG+TGG - chr3_3:35871858-35871877 Msa0450450:three_prime_UTR 40.0%
! AACAAACCAGTGGTGTTAAC+TGG - chr3_3:35871868-35871887 Msa0450450:three_prime_UTR 40.0%
ATTAGGTGTAACCCAATCAG+TGG + chr3_3:35871920-35871939 None:intergenic 40.0%
ACTGATTGGGTTACACCTAA+TGG - chr3_3:35871919-35871938 Msa0450450:three_prime_UTR 40.0%
!!! TTTTGGTGCTTCCAAAGTTC+AGG - chr3_3:35871972-35871991 Msa0450450:three_prime_UTR 40.0%
TGTGTCTGTACCGTATTTGA+AGG - chr3_3:35872418-35872437 Msa0450450:three_prime_UTR 40.0%
CTGTACCGTATTTGAAGGAT+TGG - chr3_3:35872423-35872442 Msa0450450:three_prime_UTR 40.0%
!! GAAGGATTGGCATTTTGTCA+AGG - chr3_3:35872436-35872455 Msa0450450:three_prime_UTR 40.0%
GATGCATGAACTTAAAACGC+AGG - chr3_3:35872633-35872652 Msa0450450:CDS 40.0%
TGCATGAACTTAAAACGCAG+GGG - chr3_3:35872635-35872654 Msa0450450:CDS 40.0%
! TCCCAATTCCCATTCACTTT+TGG - chr3_3:35872701-35872720 Msa0450450:CDS 40.0%
!!! TCCCATTCACTTTTGGTTCT+TGG - chr3_3:35872708-35872727 Msa0450450:CDS 40.0%
GACCAAGAACCAAAAGTGAA+TGG + chr3_3:35872713-35872732 None:intergenic 40.0%
TGACAGTGACCAGCAAAATA+AGG - chr3_3:35873140-35873159 Msa0450450:intron 40.0%
CAAAGACATGAACAACGCAA+CGG - chr3_3:35873281-35873300 Msa0450450:intron 40.0%
TTACTTTCACTTGTTCTGGC+AGG - chr3_3:35873311-35873330 Msa0450450:intron 40.0%
CTGAAAACATCAGCATGTAG+AGG + chr3_3:35873347-35873366 None:intergenic 40.0%
! CTCTACATGCTGATGTTTTC+AGG - chr3_3:35873345-35873364 Msa0450450:intron 40.0%
ATGTCTGTGGAAAGAAGAGA+TGG - chr3_3:35873387-35873406 Msa0450450:CDS 40.0%
! GAAAGAAAATGGGAGGTATG+AGG + chr3_3:35873639-35873658 None:intergenic 40.0%
!! TTTTTCAGAGGTAAAGGGTG+AGG - chr3_3:35873694-35873713 Msa0450450:intron 40.0%
GTATCTGACTCAAAATACCC+TGG - chr3_3:35873822-35873841 Msa0450450:CDS 40.0%
GCTGAAGCAGGAAATGTTAT+TGG + chr3_3:35873898-35873917 None:intergenic 40.0%
TTAGAATGCACACAAGAAGC+AGG - chr3_3:35873953-35873972 Msa0450450:intron 40.0%
TAGAATGCACACAAGAAGCA+GGG - chr3_3:35873954-35873973 Msa0450450:intron 40.0%
TCATATTTGTTCCCAGTGGA+TGG - chr3_3:35873981-35874000 Msa0450450:intron 40.0%
! ACTTGATGATACCATCCACT+GGG + chr3_3:35873995-35874014 None:intergenic 40.0%
! AACTTGATGATACCATCCAC+TGG + chr3_3:35873996-35874015 None:intergenic 40.0%
TACCACCCAAGAAAGGTTAT+AGG + chr3_3:35874239-35874258 None:intergenic 40.0%
CTCAATTTACCACCCAAGAA+AGG + chr3_3:35874246-35874265 None:intergenic 40.0%
! ACTTTTGAGCGACTACAATG+AGG - chr3_3:35874367-35874386 Msa0450450:intron 40.0%
GTTAGGTCAATTGCTCTAGT+AGG + chr3_3:35874670-35874689 None:intergenic 40.0%
TTCTAAATTCTGCATGCAGG+TGG - chr3_3:35875052-35875071 Msa0450450:intron 40.0%
TCTAAATTCTGCATGCAGGT+GGG - chr3_3:35875053-35875072 Msa0450450:intron 40.0%
! TGAAGCACTCTCAAAATCAG+AGG + chr3_3:35875117-35875136 None:intergenic 40.0%
! GAGTGCTTCATTGGTTGATT+TGG - chr3_3:35875127-35875146 Msa0450450:intron 40.0%
!! TGCTTCATTGGTTGATTTGG+TGG - chr3_3:35875130-35875149 Msa0450450:intron 40.0%
!! GCTTCATTGGTTGATTTGGT+GGG - chr3_3:35875131-35875150 Msa0450450:intron 40.0%
ATTCTGACTGCACTTGAAGT+TGG - chr3_3:35875315-35875334 Msa0450450:intron 40.0%
TTCTGACTGCACTTGAAGTT+GGG - chr3_3:35875316-35875335 Msa0450450:intron 40.0%
TCTTGTCTCATAAGATCAGG+TGG + chr3_3:35875376-35875395 None:intergenic 40.0%
GAAATGGGTGGTAACTAGTA+AGG + chr3_3:35875405-35875424 None:intergenic 40.0%
CAATTAAAGATGGGGTGATG+AGG + chr3_3:35875455-35875474 None:intergenic 40.0%
GGAGAGGTCAATTAAAGATG+GGG + chr3_3:35875463-35875482 None:intergenic 40.0%
TTTGTGTATGTTCCAGCTGT+TGG - chr3_3:35875608-35875627 Msa0450450:intron 40.0%
TTGTGTATGTTCCAGCTGTT+GGG - chr3_3:35875609-35875628 Msa0450450:intron 40.0%
TGTGGGCACAAAGAAAATGA+AGG + chr3_3:35875635-35875654 None:intergenic 40.0%
AAGTGCATTGCATTAGTGAG+AGG - chr3_3:35875706-35875725 Msa0450450:intron 40.0%
TTGCATTAGTGAGAGGAGTT+TGG - chr3_3:35875713-35875732 Msa0450450:intron 40.0%
ATTAGTGAGAGGAGTTTGGT+TGG - chr3_3:35875717-35875736 Msa0450450:intron 40.0%
TTGGTTGGCGTATAAAGGAT+TGG - chr3_3:35875732-35875751 Msa0450450:intron 40.0%
! TAAAGGATTGGTGACAGTCA+CGG - chr3_3:35875744-35875763 Msa0450450:intron 40.0%
! GTTTTGTGAAAGGCTGAATG+TGG - chr3_3:35875804-35875823 Msa0450450:intron 40.0%
TCTTGGAATGAGAAACTCAG+CGG + chr3_3:35875831-35875850 None:intergenic 40.0%
AAGGCTTCAATGAAGAGTCT+TGG + chr3_3:35875848-35875867 None:intergenic 40.0%
! TCCCTTTTATACAGACCAGA+TGG + chr3_3:35876049-35876068 None:intergenic 40.0%
AATTGAGAAGGTGAACGGGA+AGG - chr3_3:35871804-35871823 Msa0450450:three_prime_UTR 45.0%
ATTGGAGAGCTTCCACTGAT+TGG - chr3_3:35871905-35871924 Msa0450450:three_prime_UTR 45.0%
! TTGGAGAGCTTCCACTGATT+GGG - chr3_3:35871906-35871925 Msa0450450:three_prime_UTR 45.0%
TGAACGTTGCCTTGAAGTTG+AGG - chr3_3:35872346-35872365 Msa0450450:three_prime_UTR 45.0%
GAACGTTGCCTTGAAGTTGA+GGG - chr3_3:35872347-35872366 Msa0450450:three_prime_UTR 45.0%
ACACCGTTACCCTGTTCAAA+TGG - chr3_3:35872886-35872905 Msa0450450:CDS 45.0%
!!! ATGTTTTCAGGTCGTACAGC+TGG - chr3_3:35873357-35873376 Msa0450450:intron 45.0%
GTCAAACACGAAATGGCACT+GGG + chr3_3:35873429-35873448 None:intergenic 45.0%
TGTCAAACACGAAATGGCAC+TGG + chr3_3:35873430-35873449 None:intergenic 45.0%
!! AGTGCCATTTCGTGTTTGAC+AGG - chr3_3:35873429-35873448 Msa0450450:CDS 45.0%
CATGCCTGTCAAACACGAAA+TGG + chr3_3:35873436-35873455 None:intergenic 45.0%
AATTCACTGAAGGCTGAAGC+AGG + chr3_3:35873910-35873929 None:intergenic 45.0%
AGAATGCACACAAGAAGCAG+GGG - chr3_3:35873955-35873974 Msa0450450:intron 45.0%
TGCCTATAACCTTTCTTGGG+TGG - chr3_3:35874234-35874253 Msa0450450:intron 45.0%
TTGCGATTCAGTTAGACTCG+AGG - chr3_3:35874286-35874305 Msa0450450:intron 45.0%
TGCTGTTGCGGCAAACTAAT+TGG - chr3_3:35874502-35874521 Msa0450450:intron 45.0%
ATACTTTGCCTTGGCCAACT+TGG - chr3_3:35874842-35874861 Msa0450450:intron 45.0%
ATAGCAAAGCAGCACCAAGT+TGG + chr3_3:35874859-35874878 None:intergenic 45.0%
! AAACACGTGCATGCTCTAGA+AGG - chr3_3:35874978-35874997 Msa0450450:intron 45.0%
!! AACACGTGCATGCTCTAGAA+GGG - chr3_3:35874979-35874998 Msa0450450:intron 45.0%
!! TTGGTTGATTTGGTGGGACT+CGG - chr3_3:35875137-35875156 Msa0450450:intron 45.0%
AATTTGTGAACTGCGGTAGC+TGG + chr3_3:35875343-35875362 None:intergenic 45.0%
GACGATGACATGCACGAAAT+GGG + chr3_3:35875420-35875439 None:intergenic 45.0%
AGACGATGACATGCACGAAA+TGG + chr3_3:35875421-35875440 None:intergenic 45.0%
ATGAGTTCCTTGCTTTCCTC+TGG - chr3_3:35875541-35875560 Msa0450450:CDS 45.0%
AGATGTACCAGAGGAAAGCA+AGG + chr3_3:35875551-35875570 None:intergenic 45.0%
TTGCTTTCCTCTGGTACATC+TGG - chr3_3:35875550-35875569 Msa0450450:intron 45.0%
GGAGTTTGGTTGGCGTATAA+AGG - chr3_3:35875727-35875746 Msa0450450:intron 45.0%
! CTGTGCACTTGATAGTTGAG+TGG - chr3_3:35875878-35875897 Msa0450450:CDS 45.0%
! GCACTTGATAGTTGAGTGGT+TGG - chr3_3:35875882-35875901 Msa0450450:CDS 45.0%
CTGCAGAACCCTCAACTTCA+AGG + chr3_3:35872358-35872377 None:intergenic 50.0%
! GTGACACGCGTCATGCATTT+TGG - chr3_3:35872657-35872676 Msa0450450:CDS 50.0%
CACTTGTTCTGGCAGGATCT+TGG - chr3_3:35873318-35873337 Msa0450450:intron 50.0%
AGCTGGTCAGCAAATGTCTG+TGG - chr3_3:35873374-35873393 Msa0450450:CDS 50.0%
! AACACGAAATGGCACTGGGA+AGG + chr3_3:35873425-35873444 None:intergenic 50.0%
TCAGAGGTAAAGGGTGAGGA+TGG - chr3_3:35873698-35873717 Msa0450450:intron 50.0%
! TATAAAGGGGCGTAGCCTGT+AGG + chr3_3:35874087-35874106 None:intergenic 50.0%
AGGGACTCATGATTGCATCG+TGG - chr3_3:35874998-35875017 Msa0450450:intron 50.0%
GATGACATGCACGAAATGGG+TGG + chr3_3:35875417-35875436 None:intergenic 50.0%
TGAACAGCCAGATGTACCAG+AGG + chr3_3:35875560-35875579 None:intergenic 50.0%
GAAAATGAAGGCCCAACAGC+TGG + chr3_3:35875623-35875642 None:intergenic 50.0%
GAGCGACTACAATGAGGCCA+AGG - chr3_3:35874373-35874392 Msa0450450:intron 55.0%
TGTTAGCAGCAAGGTTGCGC+TGG + chr3_3:35874448-35874467 None:intergenic 55.0%
CGCAACCTTGCTGCTAACAC+AGG - chr3_3:35874449-35874468 Msa0450450:CDS 55.0%
CTGCACCTGTGTTAGCAGCA+AGG + chr3_3:35874457-35874476 None:intergenic 55.0%
! AAGCAGCACCAAGTTGGCCA+AGG + chr3_3:35874853-35874872 None:intergenic 55.0%
AGACAATACCGTCGCAGAGC+TGG - chr3_3:35875220-35875239 Msa0450450:intron 55.0%
GACAATACCGTCGCAGAGCT+GGG - chr3_3:35875221-35875240 Msa0450450:intron 55.0%
AGAGCTGGGCGACCTTAACA+TGG - chr3_3:35875235-35875254 Msa0450450:intron 55.0%
! CAGCAAGGTTGCGCTGGCAG+AGG + chr3_3:35874442-35874461 None:intergenic 65.0%
AAGGTCGCCCAGCTCTGCGA+CGG + chr3_3:35875231-35875250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 35871689 35876153 35871689 ID=Msa0450450;Name=Msa0450450
chr3_3 mRNA 35871689 35876153 35871689 ID=Msa0450450-mRNA-1;Parent=Msa0450450;Name=Msa0450450-mRNA-1;_AED=0.14;_eAED=0.14;_QI=77|0.87|0.88|1|0.87|0.88|9|870|491
chr3_3 exon 35871689 35873034 35871689 ID=Msa0450450-mRNA-1:exon:6555;Parent=Msa0450450-mRNA-1
chr3_3 exon 35873372 35873483 35873372 ID=Msa0450450-mRNA-1:exon:6554;Parent=Msa0450450-mRNA-1
chr3_3 exon 35873587 35873643 35873587 ID=Msa0450450-mRNA-1:exon:6553;Parent=Msa0450450-mRNA-1
chr3_3 exon 35873818 35873898 35873818 ID=Msa0450450-mRNA-1:exon:6552;Parent=Msa0450450-mRNA-1
chr3_3 exon 35873988 35874057 35873988 ID=Msa0450450-mRNA-1:exon:6551;Parent=Msa0450450-mRNA-1
chr3_3 exon 35874401 35874509 35874401 ID=Msa0450450-mRNA-1:exon:6550;Parent=Msa0450450-mRNA-1
chr3_3 exon 35874635 35874797 35874635 ID=Msa0450450-mRNA-1:exon:6549;Parent=Msa0450450-mRNA-1
chr3_3 exon 35875385 35875564 35875385 ID=Msa0450450-mRNA-1:exon:6548;Parent=Msa0450450-mRNA-1
chr3_3 exon 35875849 35876153 35875849 ID=Msa0450450-mRNA-1:exon:6547;Parent=Msa0450450-mRNA-1
chr3_3 five_prime_UTR 35876077 35876153 35876077 ID=Msa0450450-mRNA-1:five_prime_utr;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35875849 35876076 35875849 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35875385 35875564 35875385 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35874635 35874797 35874635 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35874401 35874509 35874401 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35873988 35874057 35873988 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35873818 35873898 35873818 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35873587 35873643 35873587 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35873372 35873483 35873372 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 CDS 35872559 35873034 35872559 ID=Msa0450450-mRNA-1:cds;Parent=Msa0450450-mRNA-1
chr3_3 three_prime_UTR 35871689 35872558 35871689 ID=Msa0450450-mRNA-1:three_prime_utr;Parent=Msa0450450-mRNA-1
Gene Sequence

>Msa0450450

ATGGGTATCATCATCAACAACATCAAAATAAAGGGAGAAATTGAGAAGGTGAACGGGAAGGAATTGAGTTACAGTGAATTTGTTGATAGATATATGGACAAGAACAAACCAGTGGTGTTAACTGGATTAATGGATCATCATTGGAGAGCTTCCACTGATTGGGTTACACCTAATGGAAAACCTAATCTTCAATTTTTCTTCAATCATTTTGGTGCTTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTCACTGATCAAAAAAGAGAGGAGATGTTGGTCTCTGATTTCGTTGAACGTTGCCTTGAAGTTGAGGGTTCTGCAGTTCAGTGCAGTAATGAAAATGGTTCAAGTAATGGTGACTCTGTGTCTGTACCGTATTTGAAGGATTGGCATTTTGTCAAGGAGTATCCAGAATATGTAGCATACATAACTCCAACGTACTTTTGTGATGATTGGCTTAACTTGTATCTTGACAACTTCAGAATGAATACTAGTTCTGACAGTGACCAGCAAAATAAGGAAATCTGCTGCTCTGACTATCGTTTTGTTTATATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTACAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATTTCGTGAATGCGAAAAGCTCTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATACCCTGGTTTTGAAAAGACTATTTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGCGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGCCTCTGCCAGCGCAACCTTGCTGCTAACACAGGGATGAATTTTTTTGACTTCTTTACTTTCATTTCATACTTTGCCTTGGCCAACTTGGTGCTGCTTTGCTATATATATGGAAGAGATAGAAGCACCACTGAAAGTTTGTCAAGAGTAGCTCAGCATTTATCTTTAAATATTGCGTCTATTAGGAAGGTTGCATCAGATATGAAACACGTGCATGCTCTAGAAGGGACTCATGATTGCATCGTGGATATGAGAAAAACATTTGAAGATCCTAGGTTTTCTAAATTCTGCATGCAGGTGGGAAAAGCATATTTAATGATACATGAGCAATCCAATTTGTCCTCTGATTTTGAGAGTGCTTCATTGGTTGATTTGGTGGGACTCGGTGTTTTGAAAGCGTGCACTTCTTCTCAGATTTACACACCTGAAGACCTCATCAAATTTATAGACAATACCGTCGCAGAGCTGGGCGACCTTAACATGGAGTCATCTGTATTGCACGTTGCTTGA
Protein sequence

>Msa0450450

MGIIINNIKIKGEIEKVNGKELSYSEFVDRYMDKNKPVVLTGLMDHHWRASTDWVTPNGKPNLQFFFNHFGASKVQVADCDTRDFTDQKREEMLVSDFVERCLEVEGSAVQCSNENGSSNGDSVSVPYLKDWHFVKEYPEYVAYITPTYFCDDWLNLYLDNFRMNTSSDSDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHFVNAKSSVYNIFDEVSDSKYPGFEKTIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFFDFFTFISYFALANLVLLCYIYGRDRSTTESLSRVAQHLSLNIASIRKVASDMKHVHALEGTHDCIVDMRKTFEDPRFSKFCMQVGKAYLMIHEQSNLSSDFESASLVDLVGLGVLKACTSSQIYTPEDLIKFIDNTVAELGDLNMESSVLHVA*