AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516320 MtrunA17_Chr3g0126881 93.891 442 12 3 5 445 3 430 0.0 845
Msa0516320 MtrunA17_Chr7g0275811 50.269 372 159 7 44 413 22 369 7.20e-121 357
Msa0516320 MtrunA17_Chr1g0146991 39.394 297 156 6 65 360 228 501 6.18e-60 206
Msa0516320 MtrunA17_Chr1g0147011 43.265 245 118 6 117 360 1151 1375 1.74e-54 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516320 AT3G49250.1 51.807 415 183 4 18 431 12 410 3.30e-141 410
Msa0516320 AT5G24280.2 38.783 263 132 6 121 376 1279 1519 3.03e-41 157
Msa0516320 AT5G24280.3 38.783 263 132 6 121 376 1279 1519 3.03e-41 157
Msa0516320 AT5G24280.1 38.783 263 132 6 121 376 1311 1551 4.44e-41 157
Msa0516320 AT5G24275.3 32.400 250 128 5 78 325 220 430 1.07e-29 120
Msa0516320 AT5G24275.4 32.400 250 128 5 78 325 220 430 1.07e-29 120
Msa0516320 AT5G24275.2 32.400 250 128 5 78 325 392 602 4.69e-29 120
Msa0516320 AT5G24275.1 32.800 250 127 5 78 325 597 807 7.92e-29 120

Find 123 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCGACTTTCTTAAGTATT+TGG 0.163897 3_4:-67810492 Msa0516320:CDS
CCCTTCCCCAAAAGACTTAA+AGG 0.164073 3_4:-67808988 Msa0516320:three_prime_UTR
GTACCACCCTTTAAGTCTTT+TGG 0.202840 3_4:+67808981 None:intergenic
GAGTGTCCGGCTGGATTTAT+TGG 0.224477 3_4:-67811393 Msa0516320:CDS
TTCTTATTCATAGTTGCTAT+TGG 0.233472 3_4:-67812202 Msa0516320:intron
CACTCCCCATTGGGCAATCT+TGG 0.257269 3_4:+67811411 None:intergenic
GAAGAATGGCGTCATCTAAT+TGG 0.281502 3_4:+67812776 None:intergenic
ATCTTTATAGATTGTTAGAT+TGG 0.295635 3_4:-67808734 Msa0516320:three_prime_UTR
ACCTGGTTGTTGCTGTTACT+TGG 0.305120 3_4:+67814208 None:intergenic
GATGGTGCTCTTTCTTTAGA+TGG 0.310152 3_4:-67811213 Msa0516320:CDS
CTACATCAATGATGAAATTA+AGG 0.314843 3_4:-67809286 Msa0516320:exon
AGTGTCCGGCTGGATTTATT+GGG 0.317673 3_4:-67811392 Msa0516320:CDS
TGTCTAACGCCAAGTGGTTA+TGG 0.330066 3_4:-67811327 Msa0516320:CDS
CTTTAGATGGAGGAATGATT+AGG 0.334200 3_4:-67811200 Msa0516320:CDS
GAAGTCTGAATCATTTGAAA+TGG 0.334940 3_4:-67808764 Msa0516320:three_prime_UTR
TCTTATTCATAGTTGCTATT+GGG 0.337983 3_4:-67812201 Msa0516320:intron
TGCCTCTATTGGAAGGCCTT+TGG 0.344800 3_4:-67811616 Msa0516320:CDS
CTGTTACTTGGTGGTGGAAC+TGG 0.350725 3_4:+67814220 None:intergenic
TCCAGAGCCAGTCTACAAAA+TGG 0.360155 3_4:+67809191 None:intergenic
TAGAGTCCTTTCTTCAGTTA+AGG 0.380820 3_4:-67809109 Msa0516320:three_prime_UTR
AACTTTGTCCTTCTTCCATT+GGG 0.387772 3_4:+67810580 None:intergenic
ATCGTCCGCATTACCAATCT+TGG 0.394765 3_4:+67812156 None:intergenic
GAAGACCCTTGGACAGATAA+TGG 0.395508 3_4:+67813147 None:intergenic
TGATATGTCTTGAATCTCTA+AGG 0.396970 3_4:-67811578 Msa0516320:CDS
AGCTCTTGAATTGTATGATA+AGG 0.402676 3_4:-67811679 Msa0516320:CDS
CTTAATTTCATCATTGATGT+AGG 0.406977 3_4:+67809287 None:intergenic
AAACTTTGTCCTTCTTCCAT+TGG 0.407671 3_4:+67810579 None:intergenic
TAAATCCAAGATTGCCCAAT+GGG 0.422999 3_4:-67811416 Msa0516320:CDS
AATAAAAGCTGTGGCCTTCA+CGG 0.424469 3_4:-67811645 Msa0516320:CDS
TTTATCTTCTCGCAGAGATT+AGG 0.428463 3_4:-67808800 Msa0516320:three_prime_UTR
CACGGGCTAGGTGCCTCTAT+TGG 0.437611 3_4:-67811627 Msa0516320:CDS
GCGTTAGACAAAATAGGTTC+CGG 0.439400 3_4:+67811340 None:intergenic
ATTGTTTGTAGAACTTATGA+AGG 0.448075 3_4:-67811708 Msa0516320:CDS
CTCCATGATGAGTCTTCACC+TGG 0.448193 3_4:+67812059 None:intergenic
AGCTCATATGAGTGTCTTGA+AGG 0.449770 3_4:+67809035 None:intergenic
CACTTGGCGTTAGACAAAAT+AGG 0.453101 3_4:+67811334 None:intergenic
ATTGCCCAATGGGGAGTGTC+CGG 0.453427 3_4:-67811406 Msa0516320:CDS
TTTACCTTGCAAATGAAGAA+TGG 0.453864 3_4:+67812762 None:intergenic
CAAGATGATCTACGCTCGCT+TGG 0.455710 3_4:-67812853 Msa0516320:CDS
CCCAATGGGGAGTGTCCGGC+TGG 0.461596 3_4:-67811402 Msa0516320:CDS
TGCTGCTGGTATTCTGTGCC+AGG 0.462317 3_4:-67812077 Msa0516320:CDS
AAGTCTGAATCATTTGAAAT+GGG 0.463295 3_4:-67808763 Msa0516320:three_prime_UTR
GCTTGATCAGCACATTGAAA+TGG 0.465601 3_4:-67810621 Msa0516320:CDS
TTTCATCATTGATGTAGGTA+AGG 0.467204 3_4:+67809292 None:intergenic
ATTATCTGTCCAAGGGTCTT+CGG 0.470018 3_4:-67813145 Msa0516320:CDS
GTTGGTGTTGTTGCTATGCT+AGG 0.470088 3_4:-67812001 Msa0516320:CDS
TGTCCAAGGGTCTTCGGCAT+TGG 0.471151 3_4:-67813139 Msa0516320:CDS
ATCCAAAGGCCTTCCAATAG+AGG 0.471825 3_4:+67811614 None:intergenic
TCTTCAAGTACAACCAAGAT+TGG 0.476782 3_4:-67812169 Msa0516320:CDS
TTGTTGCTGTTACTTGGTGG+TGG 0.478759 3_4:+67814214 None:intergenic
ATAAAAGCTGTGGCCTTCAC+GGG 0.484744 3_4:-67811644 Msa0516320:CDS
TAACGAGCTAATTCATGTAC+AGG 0.484959 3_4:+67808941 None:intergenic
TCTATAATTTCATTTGACCT+TGG 0.492403 3_4:-67808876 Msa0516320:three_prime_UTR
GCACCAATGCCGAAGACCCT+TGG 0.494073 3_4:+67813136 None:intergenic
ACCACATATTTACCAGCATA+AGG 0.498675 3_4:+67811468 None:intergenic
TGATGACTCACAACGAAAGT+TGG 0.501223 3_4:-67811445 Msa0516320:CDS
CCAGCCGGACACTCCCCATT+GGG 0.503345 3_4:+67811402 None:intergenic
CCTTCCCCAAAAGACTTAAA+GGG 0.506859 3_4:-67808987 Msa0516320:three_prime_UTR
AAGATGATCTACGCTCGCTT+GGG 0.508629 3_4:-67812852 Msa0516320:CDS
TCCAGCCGGACACTCCCCAT+TGG 0.514253 3_4:+67811401 None:intergenic
TGGTTGTTGCTGTTACTTGG+TGG 0.515289 3_4:+67814211 None:intergenic
GCACTAACACAGGATGTTGT+TGG 0.516879 3_4:-67812019 Msa0516320:CDS
TGTTCTTCATAGCTTTGCAT+CGG 0.519408 3_4:+67809263 None:intergenic
ATAAATAAGTTGTTAGCCAC+AGG 0.520925 3_4:+67809237 None:intergenic
AGGAAGCCTTAACTGAAGAA+AGG 0.522312 3_4:+67809103 None:intergenic
AGCTGTGGCCTTCACGGGCT+AGG 0.525342 3_4:-67811639 Msa0516320:CDS
GGGGTAATCATGCATACCAT+TGG 0.528425 3_4:+67809008 None:intergenic
GGAATTGAATGAAAACTTCA+CGG 0.531986 3_4:-67813109 Msa0516320:CDS
ATATGATTAATATAGACAAC+CGG 0.533417 3_4:-67811359 Msa0516320:CDS
GATGAATACCCAATGGAAGA+AGG 0.538167 3_4:-67810588 Msa0516320:CDS
TATGATCATCCGACAGTCCC+AGG 0.539342 3_4:-67813043 Msa0516320:intron
GTCTTCGGCATTGGTGCCAG+TGG 0.540521 3_4:-67813130 Msa0516320:CDS
GAATGTTCTCATTCTGATGA+AGG 0.542743 3_4:-67809164 Msa0516320:three_prime_UTR
ACAAAGCCATTATCTGTCCA+AGG 0.553422 3_4:-67813153 Msa0516320:CDS
TCTATTGGAAGGCCTTTGGA+TGG 0.556581 3_4:-67811612 Msa0516320:CDS
GACGCCATTCTTCATTTGCA+AGG 0.557760 3_4:-67812766 Msa0516320:intron
TTGAGGATGACAATCTTAGC+AGG 0.559697 3_4:-67811973 Msa0516320:intron
GCCTTATGCTGGTAAATATG+TGG 0.560207 3_4:-67811469 Msa0516320:CDS
GGAAACATGACTCAGTGAGT+TGG 0.564081 3_4:+67814241 None:intergenic
CCTCCTCCTCAGTTGTAATG+TGG 0.565780 3_4:+67812131 None:intergenic
GAAGACTCATCATGGAGCAC+AGG 0.568029 3_4:-67812053 Msa0516320:CDS
TGCCAGGTGAAGACTCATCA+TGG 0.570153 3_4:-67812061 Msa0516320:CDS
CCACATTACAACTGAGGAGG+AGG 0.570572 3_4:-67812131 Msa0516320:CDS
GGTGCTCTTTCTTTAGATGG+AGG 0.570701 3_4:-67811210 Msa0516320:CDS
GGCTAGGTGCCTCTATTGGA+AGG 0.572742 3_4:-67811623 Msa0516320:CDS
TGTACAGGGAACCAAGAAAA+CGG 0.573706 3_4:+67808956 None:intergenic
ATCAGCACATTGAAATGGAA+AGG 0.577874 3_4:-67810616 Msa0516320:CDS
TCTCTGAGGCCATAACCACT+TGG 0.580160 3_4:+67811318 None:intergenic
AAGTTCATCATACGCAACTC+AGG 0.584978 3_4:-67810465 Msa0516320:intron
TATAAGCAACCTGGGACTGT+CGG 0.585373 3_4:+67813034 None:intergenic
TTCTCTTCTTGCACTAACAC+AGG 0.587839 3_4:-67812029 Msa0516320:CDS
CTTGAATTGTATGATAAGGA+AGG 0.590543 3_4:-67811675 Msa0516320:CDS
ATATTCTTACCTATTACCCA+AGG 0.591348 3_4:+67811161 None:intergenic
ACCAAGTAACAGCAACAACC+AGG 0.593800 3_4:-67814209 Msa0516320:intron
CTCATATGAGCTATATCCAA+TGG 0.594365 3_4:-67809024 Msa0516320:three_prime_UTR
GGCAAATGATGAATACCCAA+TGG 0.597389 3_4:-67810595 Msa0516320:CDS
TCTTGGAGTGGAGACTATGT+TGG 0.599213 3_4:-67811733 Msa0516320:CDS
TTTCTCGGAGTATCTTGGAG+TGG 0.601969 3_4:-67811745 Msa0516320:CDS
TGGAGCTACGAGTGAGTCTG+TGG 0.611046 3_4:+67814261 None:intergenic
TGAAAACTTCACGGACACAA+AGG 0.611092 3_4:-67813100 Msa0516320:CDS
GCACTTCCTTGCATAAGTGA+TGG 0.618891 3_4:-67811231 Msa0516320:CDS
TGAATTTCTACGAAGAGCCA+AGG 0.619950 3_4:+67808859 None:intergenic
AGAAAAGACAATGTTGGACA+TGG 0.620991 3_4:-67810540 Msa0516320:CDS
TACAACCAAGATTGGTAATG+CGG 0.624832 3_4:-67812161 Msa0516320:CDS
GCAAACCCAATAAATCCAGC+CGG 0.628940 3_4:+67811387 None:intergenic
GTCTACAAGTATACAAGACA+AGG 0.633194 3_4:-67811269 Msa0516320:CDS
TAGAGGCACCTAGCCCGTGA+AGG 0.634434 3_4:+67811631 None:intergenic
CAAAGCCATTATCTGTCCAA+GGG 0.634786 3_4:-67813152 Msa0516320:CDS
GGAGGAATGATTAGGAGTTG+TGG 0.637606 3_4:-67811192 Msa0516320:CDS
ACTAGAAATCGACCATCCAA+AGG 0.646590 3_4:+67811600 None:intergenic
GGCAGCATAAATAAAAGCTG+TGG 0.651617 3_4:-67811654 Msa0516320:CDS
AGAGCACCATCACTTATGCA+AGG 0.654830 3_4:+67811225 None:intergenic
TGCTATGCTAGGAAAAGTTG+AGG 0.657021 3_4:-67811990 Msa0516320:CDS
TTAAATCCAAGATTGCCCAA+TGG 0.666860 3_4:-67811417 Msa0516320:CDS
TCCCCAAAAGACTTAAAGGG+TGG 0.667311 3_4:-67808984 Msa0516320:three_prime_UTR
AACGAGCTAATTCATGTACA+GGG 0.669600 3_4:+67808942 None:intergenic
TCTCCACATTACAACTGAGG+AGG 0.672917 3_4:-67812134 Msa0516320:CDS
GATGAAAATTAAGCAGCATG+AGG 0.674683 3_4:-67812830 Msa0516320:CDS
CGATCTCCACATTACAACTG+AGG 0.681013 3_4:-67812137 Msa0516320:CDS
TATAAAACAGAGTTTCTCTG+AGG 0.681314 3_4:+67811304 None:intergenic
AAATCCAAGATTGCCCAATG+GGG 0.722987 3_4:-67811415 Msa0516320:CDS
GCTATGAAGAACATAGCCTG+TGG 0.727485 3_4:-67809253 Msa0516320:three_prime_UTR
TCTACAAGTATACAAGACAA+GGG 0.738588 3_4:-67811268 Msa0516320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTAAAAGATTAAAATAAT+TGG + chr3_4:67812127-67812146 None:intergenic 10.0%
!! AAAACAAACAAAAAAAAAAT+TGG - chr3_4:67813328-67813347 Msa0516320:intron 10.0%
!! GTGAAATAAAAAAAAAATGT+AGG + chr3_4:67809066-67809085 None:intergenic 15.0%
!! AGTTTCTTCAAATATTATTT+AGG + chr3_4:67810123-67810142 None:intergenic 15.0%
!!! TGTATAGATTATTTTCTTTT+TGG - chr3_4:67811054-67811073 Msa0516320:intron 15.0%
!!! TCTGAAATAAAATATTTTGT+AGG - chr3_4:67812240-67812259 Msa0516320:intron 15.0%
!!! TTTTTTAAAAAACAAAGGTA+CGG - chr3_4:67812890-67812909 Msa0516320:intron 15.0%
!! TTTAATCAATCATTTAACAA+TGG + chr3_4:67813599-67813618 None:intergenic 15.0%
!! ATTAAAAAAAAAATCAGCAA+TGG + chr3_4:67813657-67813676 None:intergenic 15.0%
!! AAAATTAGTGAAGAAAAACT+CGG + chr3_4:67808902-67808921 None:intergenic 20.0%
!!! TTTTTCTTCACTAATTTTTC+TGG - chr3_4:67808904-67808923 Msa0516320:three_prime_UTR 20.0%
!!! TTTTCTTCACTAATTTTTCT+GGG - chr3_4:67808905-67808924 Msa0516320:three_prime_UTR 20.0%
!! AAAAAAATGTAGGTTATATG+AGG + chr3_4:67809056-67809075 None:intergenic 20.0%
!! AAAAAGAAATAGTGAAATGA+AGG - chr3_4:67809587-67809606 Msa0516320:intron 20.0%
!! ACACATGAAAAATAATTACT+AGG + chr3_4:67809761-67809780 None:intergenic 20.0%
!! TTCTTCAAATATTATTTAGG+TGG + chr3_4:67810120-67810139 None:intergenic 20.0%
!!! TTTTGATTATGAAGTTTATG+CGG - chr3_4:67810435-67810454 Msa0516320:intron 20.0%
!!! ATGTTTTTGTCTTTTATTTG+TGG - chr3_4:67811458-67811477 Msa0516320:CDS 20.0%
!! ATATGATTAATATAGACAAC+CGG - chr3_4:67811638-67811657 Msa0516320:CDS 20.0%
!!! ATTTTCATTAATCTTTCAAG+TGG - chr3_4:67812041-67812060 Msa0516320:CDS 20.0%
!! TCAAACTTACATAATTCATA+TGG + chr3_4:67812177-67812196 None:intergenic 20.0%
!! GTTACAATTATTATTCATTG+AGG + chr3_4:67812219-67812238 None:intergenic 20.0%
!!! GAAATGACTTCTAATATTTT+AGG - chr3_4:67812689-67812708 Msa0516320:intron 20.0%
!!! CGACATTTTTTAAAAAACAA+AGG - chr3_4:67812885-67812904 Msa0516320:intron 20.0%
!!! TTTTTAAAAAACAAAGGTAC+GGG - chr3_4:67812891-67812910 Msa0516320:intron 20.0%
!!! ATTTAAAATAACATAGCATG+AGG - chr3_4:67812938-67812957 Msa0516320:intron 20.0%
!! TATTGCAATATATCATACAA+GGG + chr3_4:67813122-67813141 None:intergenic 20.0%
!!! TTTTGTTTGTTTTTAAACCT+TGG + chr3_4:67813321-67813340 None:intergenic 20.0%
!! AAAAAAAAATTGGTACATCA+TGG - chr3_4:67813338-67813357 Msa0516320:intron 20.0%
!! AAAAAAAATTGGTACATCAT+GGG - chr3_4:67813339-67813358 Msa0516320:intron 20.0%
!!! ATATAGTTGTTTCAAATGAA+TGG - chr3_4:67813526-67813545 Msa0516320:intron 20.0%
!!! TTATTCTTCTATACAGTTTT+TGG - chr3_4:67814162-67814181 Msa0516320:intron 20.0%
!! ATCTTTATAGATTGTTAGAT+TGG - chr3_4:67814263-67814282 Msa0516320:five_prime_UTR 20.0%
! AAAATAAAGCAAACGATTAG+AGG + chr3_4:67808839-67808858 None:intergenic 25.0%
! AATCTCTTGAAATTATCAGT+CGG - chr3_4:67808933-67808952 Msa0516320:three_prime_UTR 25.0%
!!! GAATAGCGATTTTAATTACT+CGG - chr3_4:67808968-67808987 Msa0516320:three_prime_UTR 25.0%
!!! ACTCGGTTGTATTTTAATTT+AGG - chr3_4:67808985-67809004 Msa0516320:three_prime_UTR 25.0%
!!! CTCGGTTGTATTTTAATTTA+GGG - chr3_4:67808986-67809005 Msa0516320:three_prime_UTR 25.0%
!!! TTTTTTTATTTCACTCGCAT+TGG - chr3_4:67809072-67809091 Msa0516320:three_prime_UTR 25.0%
!! GCTCTTTTATGATAGAAATT+TGG - chr3_4:67809126-67809145 Msa0516320:three_prime_UTR 25.0%
!! GAAAAATATTTTCACAAAGG+GGG + chr3_4:67809386-67809405 None:intergenic 25.0%
!! CGAAAAATATTTTCACAAAG+GGG + chr3_4:67809387-67809406 None:intergenic 25.0%
!! CCGAAAAATATTTTCACAAA+GGG + chr3_4:67809388-67809407 None:intergenic 25.0%
!! CCCTTTGTGAAAATATTTTT+CGG - chr3_4:67809385-67809404 Msa0516320:intron 25.0%
! TTTCGAAAAATGTACACAAT+TGG - chr3_4:67809420-67809439 Msa0516320:intron 25.0%
! AACACATAGAATCATACTAT+TGG + chr3_4:67809642-67809661 None:intergenic 25.0%
! TCTTTAATTAAAGAGGGATT+GGG + chr3_4:67809672-67809691 None:intergenic 25.0%
! ATCCAGTCTTTAATTAAAGA+GGG + chr3_4:67809678-67809697 None:intergenic 25.0%
! TATCCAGTCTTTAATTAAAG+AGG + chr3_4:67809679-67809698 None:intergenic 25.0%
! TGGATAATGATCATTCATTT+GGG - chr3_4:67809693-67809712 Msa0516320:intron 25.0%
! TTGAATAATTCTTACAAGAC+TGG - chr3_4:67810484-67810503 Msa0516320:CDS 25.0%
! TGAATAATTCTTACAAGACT+GGG - chr3_4:67810485-67810504 Msa0516320:CDS 25.0%
! TAATATGTTTCCGTATGTAT+AGG - chr3_4:67810580-67810599 Msa0516320:CDS 25.0%
! TTCCTTAAAAAAATGAAGAG+CGG + chr3_4:67810673-67810692 None:intergenic 25.0%
! ATAGCAACTATGAATAAGAA+AGG + chr3_4:67810795-67810814 None:intergenic 25.0%
! TTCTTATTCATAGTTGCTAT+TGG - chr3_4:67810795-67810814 Msa0516320:intron 25.0%
!! TCTTATTCATAGTTGCTATT+GGG - chr3_4:67810796-67810815 Msa0516320:intron 25.0%
!! TTATTTCACAGTCTTGTAAT+AGG - chr3_4:67811094-67811113 Msa0516320:intron 25.0%
!! TAATAGGTACTTTGTTTCTT+CGG - chr3_4:67811110-67811129 Msa0516320:intron 25.0%
! ATTGTTTGTAGAACTTATGA+AGG - chr3_4:67811289-67811308 Msa0516320:CDS 25.0%
!!! CTTTTTTCCTGTTTTGTTTT+AGG - chr3_4:67811506-67811525 Msa0516320:intron 25.0%
! TATCTTCTGATAATTATGAC+AGG - chr3_4:67811904-67811923 Msa0516320:intron 25.0%
! AGAAAGCTAGAAAAGATAAA+TGG - chr3_4:67811981-67812000 Msa0516320:CDS 25.0%
! GAAAGCTAGAAAAGATAAAT+GGG - chr3_4:67811982-67812001 Msa0516320:CDS 25.0%
! GTTTGATATGTTGTACAAAA+TGG - chr3_4:67812191-67812210 Msa0516320:CDS 25.0%
! TTGTAAACTGAAAAAACTGT+TGG - chr3_4:67812299-67812318 Msa0516320:intron 25.0%
! TGTAAACTGAAAAAACTGTT+GGG - chr3_4:67812300-67812319 Msa0516320:intron 25.0%
! AAAAAGAGAAAAGACAATGT+TGG - chr3_4:67812451-67812470 Msa0516320:intron 25.0%
!! GATATTTGAATTTTAAGCCT+AGG - chr3_4:67812566-67812585 Msa0516320:intron 25.0%
! AAAAGCAATATAATTTCTGC+CGG + chr3_4:67812980-67812999 None:intergenic 25.0%
! CTATTGCAATATATCATACA+AGG + chr3_4:67813123-67813142 None:intergenic 25.0%
! TATCATGATTCAAGATTTAC+TGG + chr3_4:67813627-67813646 None:intergenic 25.0%
! TTTAATCTAATGACACTATC+AGG - chr3_4:67813671-67813690 Msa0516320:intron 25.0%
! TCTATAATTTCATTTGACCT+TGG - chr3_4:67814121-67814140 Msa0516320:intron 25.0%
!! AAGTCTGAATCATTTGAAAT+GGG - chr3_4:67814234-67814253 Msa0516320:exon 25.0%
TCTCACAACGTGATAAAATT+AGG - chr3_4:67809227-67809246 Msa0516320:three_prime_UTR 30.0%
CTCACAACGTGATAAAATTA+GGG - chr3_4:67809228-67809247 Msa0516320:three_prime_UTR 30.0%
TCACAACGTGATAAAATTAG+GGG - chr3_4:67809229-67809248 Msa0516320:three_prime_UTR 30.0%
! GCCGAAAAATATTTTCACAA+AGG + chr3_4:67809389-67809408 None:intergenic 30.0%
AAGGGAAAAGAAGAGAAATT+AGG + chr3_4:67809522-67809541 None:intergenic 30.0%
AAACCATGTCAAATTTCGAA+GGG + chr3_4:67809540-67809559 None:intergenic 30.0%
TAAACCATGTCAAATTTCGA+AGG + chr3_4:67809541-67809560 None:intergenic 30.0%
GAAATTTGACATGGTTTACA+TGG - chr3_4:67809543-67809562 Msa0516320:intron 30.0%
GTCTTTAATTAAAGAGGGAT+TGG + chr3_4:67809673-67809692 None:intergenic 30.0%
ATCCCTCTTTAATTAAAGAC+TGG - chr3_4:67809673-67809692 Msa0516320:intron 30.0%
CTGGATAATGATCATTCATT+TGG - chr3_4:67809692-67809711 Msa0516320:intron 30.0%
GGATAATGATCATTCATTTG+GGG - chr3_4:67809694-67809713 Msa0516320:intron 30.0%
GATAATGATCATTCATTTGG+GGG - chr3_4:67809695-67809714 Msa0516320:intron 30.0%
! AAGTTTTCATTCAATTCCAC+TGG + chr3_4:67809886-67809905 None:intergenic 30.0%
GGAATTGAATGAAAACTTCA+CGG - chr3_4:67809888-67809907 Msa0516320:intron 30.0%
ACAAAGGACAATGTGAAAAA+TGG - chr3_4:67809913-67809932 Msa0516320:intron 30.0%
ACATCAAATATAAGCAACCT+GGG + chr3_4:67809974-67809993 None:intergenic 30.0%
AACATCAAATATAAGCAACC+TGG + chr3_4:67809975-67809994 None:intergenic 30.0%
TTTACCTTGCAAATGAAGAA+TGG + chr3_4:67810238-67810257 None:intergenic 30.0%
! GATGACTTTTCTTCTTTGTT+TGG - chr3_4:67810276-67810295 Msa0516320:intron 30.0%
TTAAGCTTTCTTGATTCTGA+AGG - chr3_4:67810376-67810395 Msa0516320:intron 30.0%
TTATTCAATCTCTTGCTGAT+GGG + chr3_4:67810472-67810491 None:intergenic 30.0%
ATTATTCAATCTCTTGCTGA+TGG + chr3_4:67810473-67810492 None:intergenic 30.0%
ATTTCTCTATCAACAAACGT+AGG - chr3_4:67810722-67810741 Msa0516320:intron 30.0%
AATAAGTCGAGTGAAACTAT+CGG + chr3_4:67811219-67811238 None:intergenic 30.0%
ATAGTTTCACTCGACTTATT+TGG - chr3_4:67811219-67811238 Msa0516320:CDS 30.0%
AGCTCTTGAATTGTATGATA+AGG - chr3_4:67811318-67811337 Msa0516320:CDS 30.0%
CTTGAATTGTATGATAAGGA+AGG - chr3_4:67811322-67811341 Msa0516320:CDS 30.0%
TGATATGTCTTGAATCTCTA+AGG - chr3_4:67811419-67811438 Msa0516320:CDS 30.0%
!! TTGTCTTTTATTTGTGGTTG+TGG - chr3_4:67811464-67811483 Msa0516320:CDS 30.0%
TATAAAACAGAGTTTCTCTG+AGG + chr3_4:67811696-67811715 None:intergenic 30.0%
TCTACAAGTATACAAGACAA+GGG - chr3_4:67811729-67811748 Msa0516320:CDS 30.0%
ATATTCTTACCTATTACCCA+AGG + chr3_4:67811839-67811858 None:intergenic 30.0%
CTAGATTAACTACAGTTTAC+TGG - chr3_4:67812069-67812088 Msa0516320:CDS 30.0%
GTAAACTGAAAAAACTGTTG+GGG - chr3_4:67812301-67812320 Msa0516320:intron 30.0%
! ATTTGAATTTTAAGCCTAGG+TGG - chr3_4:67812569-67812588 Msa0516320:intron 30.0%
TAGGTGGTTTATAAGACATT+GGG - chr3_4:67812585-67812604 Msa0516320:intron 30.0%
ATTATTACCAAACTCAGCAA+TGG - chr3_4:67812788-67812807 Msa0516320:CDS 30.0%
TTATTACCAAACTCAGCAAT+GGG - chr3_4:67812789-67812808 Msa0516320:CDS 30.0%
!!! AGATATTCATTTGTCGCTTT+TGG - chr3_4:67813036-67813055 Msa0516320:intron 30.0%
TCATGAGAATTATGCAAGAA+AGG + chr3_4:67813184-67813203 None:intergenic 30.0%
TTTAAACCTTGGTACAGTTA+CGG + chr3_4:67813310-67813329 None:intergenic 30.0%
! TTGTGCCATTATATCACAAT+CGG + chr3_4:67813573-67813592 None:intergenic 30.0%
ATAAATAAGTTGTTAGCCAC+AGG + chr3_4:67813763-67813782 None:intergenic 30.0%
TTCTGATGAAGGTCAAAAAA+AGG - chr3_4:67813844-67813863 Msa0516320:intron 30.0%
!!! TCCTTTTTTCTTCTTCTTCA+AGG - chr3_4:67813913-67813932 Msa0516320:intron 30.0%
ACCTTGAAGAAGAAGAAAAA+AGG + chr3_4:67813917-67813936 None:intergenic 30.0%
GAGCTACAAGCAAAAAAAAA+AGG + chr3_4:67814103-67814122 None:intergenic 30.0%
GAAGTCTGAATCATTTGAAA+TGG - chr3_4:67814233-67814252 Msa0516320:exon 30.0%
TAAAGCAAACGATTAGAGGA+GGG + chr3_4:67808835-67808854 None:intergenic 35.0%
ATAAAGCAAACGATTAGAGG+AGG + chr3_4:67808836-67808855 None:intergenic 35.0%
AGGATATGGTTAGAGAACAT+TGG + chr3_4:67808869-67808888 None:intergenic 35.0%
AAAAACTCGGTAAATCACGA+AGG + chr3_4:67808889-67808908 None:intergenic 35.0%
TATCAGTCGGAGAATTGTTA+TGG - chr3_4:67808946-67808965 Msa0516320:three_prime_UTR 35.0%
TTTAGTACGCATTAGAACTG+CGG - chr3_4:67809162-67809181 Msa0516320:three_prime_UTR 35.0%
TTTCCCTTCGAAATTTGACA+TGG - chr3_4:67809534-67809553 Msa0516320:intron 35.0%
AGTTATTCTTGTGCAGCATT+TGG - chr3_4:67809816-67809835 Msa0516320:intron 35.0%
GATGAAAATTAAGCAGCATG+AGG - chr3_4:67810167-67810186 Msa0516320:intron 35.0%
GTGAATGAACTCTACAGAAT+CGG + chr3_4:67810344-67810363 None:intergenic 35.0%
GAGTTCATTCACTGAATCAA+TGG - chr3_4:67810352-67810371 Msa0516320:intron 35.0%
TATTCAATCTCTTGCTGATG+GGG + chr3_4:67810471-67810490 None:intergenic 35.0%
!!! TGCCGCTCTTCATTTTTTTA+AGG - chr3_4:67810668-67810687 Msa0516320:CDS 35.0%
TCTTCAAGTACAACCAAGAT+TGG - chr3_4:67810828-67810847 Msa0516320:intron 35.0%
!! TACAACCAAGATTGGTAATG+CGG - chr3_4:67810836-67810855 Msa0516320:intron 35.0%
!! TTTGGAATGCAGACTTTTCT+CGG - chr3_4:67811237-67811256 Msa0516320:CDS 35.0%
CATAAGGCCTAAAACAAAAC+AGG + chr3_4:67811516-67811535 None:intergenic 35.0%
!!! TTTTGTTTTAGGCCTTATGC+TGG - chr3_4:67811517-67811536 Msa0516320:intron 35.0%
ACCACATATTTACCAGCATA+AGG + chr3_4:67811532-67811551 None:intergenic 35.0%
TTAAATCCAAGATTGCCCAA+TGG - chr3_4:67811580-67811599 Msa0516320:CDS 35.0%
TAAATCCAAGATTGCCCAAT+GGG - chr3_4:67811581-67811600 Msa0516320:CDS 35.0%
GTCTACAAGTATACAAGACA+AGG - chr3_4:67811728-67811747 Msa0516320:CDS 35.0%
CTTTAGATGGAGGAATGATT+AGG - chr3_4:67811797-67811816 Msa0516320:intron 35.0%
! AGTTGTGGTGTATTTTCCTT+GGG - chr3_4:67811820-67811839 Msa0516320:intron 35.0%
! GTGTATTTTCCTTGGGTAAT+AGG - chr3_4:67811827-67811846 Msa0516320:intron 35.0%
ATCAGCACATTGAAATGGAA+AGG - chr3_4:67812381-67812400 Msa0516320:intron 35.0%
AACTTTGTCCTTCTTCCATT+GGG + chr3_4:67812420-67812439 None:intergenic 35.0%
AAACTTTGTCCTTCTTCCAT+TGG + chr3_4:67812421-67812440 None:intergenic 35.0%
AGAAAAGACAATGTTGGACA+TGG - chr3_4:67812457-67812476 Msa0516320:intron 35.0%
GAGCGACTTTCTTAAGTATT+TGG - chr3_4:67812505-67812524 Msa0516320:intron 35.0%
CAATGTCTTATAAACCACCT+AGG + chr3_4:67812586-67812605 None:intergenic 35.0%
CTAGGTGGTTTATAAGACAT+TGG - chr3_4:67812584-67812603 Msa0516320:intron 35.0%
CAGTCAAAATGACTAGGATA+AGG + chr3_4:67812650-67812669 None:intergenic 35.0%
CTAACACAGTCAAAATGACT+AGG + chr3_4:67812656-67812675 None:intergenic 35.0%
! CTGAAAATCCTTTTTCTCTG+TGG - chr3_4:67812735-67812754 Msa0516320:intron 35.0%
CAAAGTTACCACAGAGAAAA+AGG + chr3_4:67812746-67812765 None:intergenic 35.0%
!!! TCTGTGGTAACTTTGTTTTG+TGG - chr3_4:67812751-67812770 Msa0516320:intron 35.0%
!! ACTATTGATTCTGTGTTGCA+CGG - chr3_4:67812817-67812836 Msa0516320:CDS 35.0%
AGGAAATTATATCGCTCAAC+CGG - chr3_4:67812958-67812977 Msa0516320:intron 35.0%
! GCTATCCCTTTTTCTTTTCT+CGG - chr3_4:67813066-67813085 Msa0516320:CDS 35.0%
TTGCTCCGAGAAAAGAAAAA+GGG + chr3_4:67813074-67813093 None:intergenic 35.0%
TTTGCTCCGAGAAAAGAAAA+AGG + chr3_4:67813075-67813094 None:intergenic 35.0%
GAAAAGGAAATAATGCAACC+TGG + chr3_4:67813154-67813173 None:intergenic 35.0%
! ATTATGCAAGAAAGGCATGA+AGG + chr3_4:67813176-67813195 None:intergenic 35.0%
!!! TGAAAAGCGTCATTTTCTCA+AGG - chr3_4:67813243-67813262 Msa0516320:intron 35.0%
!! TAATCAATAGCTCTGAAGCA+CGG + chr3_4:67813432-67813451 None:intergenic 35.0%
! TGTTCTTCATAGCTTTGCAT+CGG + chr3_4:67813737-67813756 None:intergenic 35.0%
GAATGTTCTCATTCTGATGA+AGG - chr3_4:67813833-67813852 Msa0516320:intron 35.0%
TAGAGTCCTTTCTTCAGTTA+AGG - chr3_4:67813888-67813907 Msa0516320:intron 35.0%
CTCATATGAGCTATATCCAA+TGG - chr3_4:67813973-67813992 Msa0516320:intron 35.0%
! TACCACCCTTTAAGTCTTTT+GGG + chr3_4:67814018-67814037 None:intergenic 35.0%
AACGAGCTAATTCATGTACA+GGG + chr3_4:67814058-67814077 None:intergenic 35.0%
TAACGAGCTAATTCATGTAC+AGG + chr3_4:67814059-67814078 None:intergenic 35.0%
TTTATCTTCTCGCAGAGATT+AGG - chr3_4:67814197-67814216 Msa0516320:intron 35.0%
AATGCAGAGAGAAATTGACC+TGG + chr3_4:67808809-67808828 None:intergenic 40.0%
TCGGTAAATCACGAAGGATA+TGG + chr3_4:67808883-67808902 None:intergenic 40.0%
TTAGTACGCATTAGAACTGC+GGG - chr3_4:67809163-67809182 Msa0516320:three_prime_UTR 40.0%
! ACTGGGTTGAGTCTAACAAA+AGG - chr3_4:67809196-67809215 Msa0516320:three_prime_UTR 40.0%
! CTGGGTTGAGTCTAACAAAA+GGG - chr3_4:67809197-67809216 Msa0516320:three_prime_UTR 40.0%
! TGGGTTGAGTCTAACAAAAG+GGG - chr3_4:67809198-67809217 Msa0516320:three_prime_UTR 40.0%
CACACAGATGTATGCATCTT+AGG + chr3_4:67809323-67809342 None:intergenic 40.0%
ATGATCATTCATTTGGGGGA+TGG - chr3_4:67809699-67809718 Msa0516320:intron 40.0%
ACAAAGCCATTATCTGTCCA+AGG - chr3_4:67809844-67809863 Msa0516320:intron 40.0%
CAAAGCCATTATCTGTCCAA+GGG - chr3_4:67809845-67809864 Msa0516320:intron 40.0%
ATTATCTGTCCAAGGGTCTT+CGG - chr3_4:67809852-67809871 Msa0516320:intron 40.0%
TGAAAACTTCACGGACACAA+AGG - chr3_4:67809897-67809916 Msa0516320:intron 40.0%
GAAGAATGGCGTCATCTAAT+TGG + chr3_4:67810224-67810243 None:intergenic 40.0%
ATTCAATCTCTTGCTGATGG+GGG + chr3_4:67810470-67810489 None:intergenic 40.0%
!! TTAGCTTTGGAGGTTGAGAT+TGG - chr3_4:67810527-67810546 Msa0516320:CDS 40.0%
!! CTGACCCAGAGTTTTTAGAT+GGG - chr3_4:67810550-67810569 Msa0516320:CDS 40.0%
!! TGACCCAGAGTTTTTAGATG+GGG - chr3_4:67810551-67810570 Msa0516320:CDS 40.0%
ATGCCCCATCTAAAAACTCT+GGG + chr3_4:67810557-67810576 None:intergenic 40.0%
AATGCCCCATCTAAAAACTC+TGG + chr3_4:67810558-67810577 None:intergenic 40.0%
TCCGTATGTATAGGCTGAAA+AGG - chr3_4:67810589-67810608 Msa0516320:CDS 40.0%
! CCCTTTTCAGCCTATACATA+CGG + chr3_4:67810593-67810612 None:intergenic 40.0%
CCGTATGTATAGGCTGAAAA+GGG - chr3_4:67810590-67810609 Msa0516320:CDS 40.0%
TTCTCTTCTTGCACTAACAC+AGG - chr3_4:67810968-67810987 Msa0516320:intron 40.0%
TGCTATGCTAGGAAAAGTTG+AGG - chr3_4:67811007-67811026 Msa0516320:intron 40.0%
TTGAGGATGACAATCTTAGC+AGG - chr3_4:67811024-67811043 Msa0516320:intron 40.0%
CAAGACTGTGAAATAAGTGC+AGG + chr3_4:67811090-67811109 None:intergenic 40.0%
!! AGACTTTTCTCGGAGTATCT+TGG - chr3_4:67811247-67811266 Msa0516320:CDS 40.0%
GGCAGCATAAATAAAAGCTG+TGG - chr3_4:67811343-67811362 Msa0516320:CDS 40.0%
AATAAAAGCTGTGGCCTTCA+CGG - chr3_4:67811352-67811371 Msa0516320:CDS 40.0%
ACTAGAAATCGACCATCCAA+AGG + chr3_4:67811400-67811419 None:intergenic 40.0%
GCCTTATGCTGGTAAATATG+TGG - chr3_4:67811528-67811547 Msa0516320:intron 40.0%
TGATGACTCACAACGAAAGT+TGG - chr3_4:67811552-67811571 Msa0516320:CDS 40.0%
AAATCCAAGATTGCCCAATG+GGG - chr3_4:67811582-67811601 Msa0516320:CDS 40.0%
GCGTTAGACAAAATAGGTTC+CGG + chr3_4:67811660-67811679 None:intergenic 40.0%
CACTTGGCGTTAGACAAAAT+AGG + chr3_4:67811666-67811685 None:intergenic 40.0%
! CTATTTTGTCTAACGCCAAG+TGG - chr3_4:67811664-67811683 Msa0516320:CDS 40.0%
GATGGTGCTCTTTCTTTAGA+TGG - chr3_4:67811784-67811803 Msa0516320:intron 40.0%
! GAGTTGTGGTGTATTTTCCT+TGG - chr3_4:67811819-67811838 Msa0516320:intron 40.0%
TTGAAAACTTTGCCCATCCT+GGG - chr3_4:67811927-67811946 Msa0516320:intron 40.0%
! GTTATTTCCTATCCCAGGAT+GGG + chr3_4:67811942-67811961 None:intergenic 40.0%
!! TGTTATTTCCTATCCCAGGA+TGG + chr3_4:67811943-67811962 None:intergenic 40.0%
!! CACATGTTATTTCCTATCCC+AGG + chr3_4:67811947-67811966 None:intergenic 40.0%
GAACAATGCCATCCTAAACA+GGG - chr3_4:67812091-67812110 Msa0516320:CDS 40.0%
!!! CCAATGTTTTTTCTGGTCTG+GGG + chr3_4:67812355-67812374 None:intergenic 40.0%
!!! CCCAATGTTTTTTCTGGTCT+GGG + chr3_4:67812356-67812375 None:intergenic 40.0%
CCCAGACCAGAAAAAACATT+GGG - chr3_4:67812353-67812372 Msa0516320:intron 40.0%
CCAGACCAGAAAAAACATTG+GGG - chr3_4:67812354-67812373 Msa0516320:intron 40.0%
!!! TCAAGCCCCAATGTTTTTTC+TGG + chr3_4:67812362-67812381 None:intergenic 40.0%
GCTTGATCAGCACATTGAAA+TGG - chr3_4:67812376-67812395 Msa0516320:intron 40.0%
GGCAAATGATGAATACCCAA+TGG - chr3_4:67812402-67812421 Msa0516320:intron 40.0%
GATGAATACCCAATGGAAGA+AGG - chr3_4:67812409-67812428 Msa0516320:intron 40.0%
AAGTTCATCATACGCAACTC+AGG - chr3_4:67812532-67812551 Msa0516320:intron 40.0%
TGAATACCCATTGCTGAGTT+TGG + chr3_4:67812798-67812817 None:intergenic 40.0%
!! CTATTGATTCTGTGTTGCAC+GGG - chr3_4:67812818-67812837 Msa0516320:CDS 40.0%
ATTGCAATAGTTGCAGTTCC+AGG - chr3_4:67813133-67813152 Msa0516320:CDS 40.0%
! CAAGAAAGGCATGAAGGAAA+AGG + chr3_4:67813170-67813189 None:intergenic 40.0%
! TACGGGTACGTTTTGCAAAT+TGG - chr3_4:67813401-67813420 Msa0516320:intron 40.0%
!! AATCAATAGCTCTGAAGCAC+GGG + chr3_4:67813431-67813450 None:intergenic 40.0%
ACAATCGGCAGCAATCTTAT+TGG + chr3_4:67813558-67813577 None:intergenic 40.0%
! TGCTGCCGATTGTGATATAA+TGG - chr3_4:67813565-67813584 Msa0516320:intron 40.0%
! CGCATATCCATTTTGTAGAC+TGG - chr3_4:67813799-67813818 Msa0516320:intron 40.0%
AGGAAGCCTTAACTGAAGAA+AGG + chr3_4:67813897-67813916 None:intergenic 40.0%
AGCTCATATGAGTGTCTTGA+AGG + chr3_4:67813965-67813984 None:intergenic 40.0%
!! CTTTAAGTCTTTTGGGGAAG+GGG + chr3_4:67814011-67814030 None:intergenic 40.0%
!! CCTTTAAGTCTTTTGGGGAA+GGG + chr3_4:67814012-67814031 None:intergenic 40.0%
CCTTCCCCAAAAGACTTAAA+GGG - chr3_4:67814010-67814029 Msa0516320:intron 40.0%
! ACCACCCTTTAAGTCTTTTG+GGG + chr3_4:67814017-67814036 None:intergenic 40.0%
! GTACCACCCTTTAAGTCTTT+TGG + chr3_4:67814019-67814038 None:intergenic 40.0%
TGTACAGGGAACCAAGAAAA+CGG + chr3_4:67814044-67814063 None:intergenic 40.0%
TGAATTTCTACGAAGAGCCA+AGG + chr3_4:67814141-67814160 None:intergenic 40.0%
GGAAACATGACTCAGTGAGT+TGG + chr3_4:67808759-67808778 None:intergenic 45.0%
! TTGTTGCTGTTACTTGGTGG+TGG + chr3_4:67808786-67808805 None:intergenic 45.0%
! TGGTTGTTGCTGTTACTTGG+TGG + chr3_4:67808789-67808808 None:intergenic 45.0%
ACCAAGTAACAGCAACAACC+AGG - chr3_4:67808788-67808807 Msa0516320:three_prime_UTR 45.0%
! ACCTGGTTGTTGCTGTTACT+TGG + chr3_4:67808792-67808811 None:intergenic 45.0%
TTACTAGGCACTACTTCAGC+AGG + chr3_4:67809746-67809765 None:intergenic 45.0%
GAAGACCCTTGGACAGATAA+TGG + chr3_4:67809853-67809872 None:intergenic 45.0%
TATAAGCAACCTGGGACTGT+CGG + chr3_4:67809966-67809985 None:intergenic 45.0%
AAGATGATCTACGCTCGCTT+GGG - chr3_4:67810145-67810164 Msa0516320:intron 45.0%
GACGCCATTCTTCATTTGCA+AGG - chr3_4:67810231-67810250 Msa0516320:intron 45.0%
GAAGGCTGCACGAGTATTAT+CGG - chr3_4:67810394-67810413 Msa0516320:intron 45.0%
ACCTCCAAAGCTAACTCAAG+CGG + chr3_4:67810521-67810540 None:intergenic 45.0%
!! GCTGACCCAGAGTTTTTAGA+TGG - chr3_4:67810549-67810568 Msa0516320:CDS 45.0%
ATCGTCCGCATTACCAATCT+TGG + chr3_4:67810844-67810863 None:intergenic 45.0%
CGATCTCCACATTACAACTG+AGG - chr3_4:67810860-67810879 Msa0516320:intron 45.0%
TCTCCACATTACAACTGAGG+AGG - chr3_4:67810863-67810882 Msa0516320:intron 45.0%
CAGCATGAAAAATCTGCTGC+TGG - chr3_4:67810906-67810925 Msa0516320:intron 45.0%
GCACTAACACAGGATGTTGT+TGG - chr3_4:67810978-67810997 Msa0516320:intron 45.0%
!! GTTGGTGTTGTTGCTATGCT+AGG - chr3_4:67810996-67811015 Msa0516320:intron 45.0%
! TTTCTCGGAGTATCTTGGAG+TGG - chr3_4:67811252-67811271 Msa0516320:CDS 45.0%
TCTTGGAGTGGAGACTATGT+TGG - chr3_4:67811264-67811283 Msa0516320:CDS 45.0%
ATAAAAGCTGTGGCCTTCAC+GGG - chr3_4:67811353-67811372 Msa0516320:CDS 45.0%
ATCCAAAGGCCTTCCAATAG+AGG + chr3_4:67811386-67811405 None:intergenic 45.0%
TCTATTGGAAGGCCTTTGGA+TGG - chr3_4:67811385-67811404 Msa0516320:CDS 45.0%
AGTGTCCGGCTGGATTTATT+GGG - chr3_4:67811605-67811624 Msa0516320:CDS 45.0%
GCAAACCCAATAAATCCAGC+CGG + chr3_4:67811613-67811632 None:intergenic 45.0%
TGTCTAACGCCAAGTGGTTA+TGG - chr3_4:67811670-67811689 Msa0516320:CDS 45.0%
GCACTTCCTTGCATAAGTGA+TGG - chr3_4:67811766-67811785 Msa0516320:intron 45.0%
! AGAGCACCATCACTTATGCA+AGG + chr3_4:67811775-67811794 None:intergenic 45.0%
GGTGCTCTTTCTTTAGATGG+AGG - chr3_4:67811787-67811806 Msa0516320:intron 45.0%
GGAGGAATGATTAGGAGTTG+TGG - chr3_4:67811805-67811824 Msa0516320:intron 45.0%
GTTGAAAACTTTGCCCATCC+TGG - chr3_4:67811926-67811945 Msa0516320:intron 45.0%
GGAACAATGCCATCCTAAAC+AGG - chr3_4:67812090-67812109 Msa0516320:CDS 45.0%
TTGTCAGACCCTGTTTAGGA+TGG + chr3_4:67812102-67812121 None:intergenic 45.0%
AAAAAACTGTTGGGGTCTGC+AGG - chr3_4:67812309-67812328 Msa0516320:intron 45.0%
AAAAACTGTTGGGGTCTGCA+GGG - chr3_4:67812310-67812329 Msa0516320:intron 45.0%
CCCCAGACCAGAAAAAACAT+TGG - chr3_4:67812352-67812371 Msa0516320:intron 45.0%
!!! CCCCAATGTTTTTTCTGGTC+TGG + chr3_4:67812357-67812376 None:intergenic 45.0%
CGCAACTCAGGTAATCTTTC+TGG - chr3_4:67812544-67812563 Msa0516320:intron 45.0%
! AACAAAGGTACGGGTACGTT+AGG - chr3_4:67812900-67812919 Msa0516320:intron 45.0%
ACCTTGGTACAGTTACGGTA+CGG + chr3_4:67813305-67813324 None:intergenic 45.0%
TTTGCAAAACGTACCCGTAC+CGG + chr3_4:67813400-67813419 None:intergenic 45.0%
GCTATGAAGAACATAGCCTG+TGG - chr3_4:67813744-67813763 Msa0516320:intron 45.0%
!! TCCATTTTGTAGACTGGCTC+TGG - chr3_4:67813805-67813824 Msa0516320:intron 45.0%
TCCAGAGCCAGTCTACAAAA+TGG + chr3_4:67813809-67813828 None:intergenic 45.0%
!!! TTTTGTAGACTGGCTCTGGA+AGG - chr3_4:67813809-67813828 Msa0516320:intron 45.0%
GGGGTAATCATGCATACCAT+TGG + chr3_4:67813992-67814011 None:intergenic 45.0%
CCCTTCCCCAAAAGACTTAA+AGG - chr3_4:67814009-67814028 Msa0516320:intron 45.0%
!! CCCTTTAAGTCTTTTGGGGA+AGG + chr3_4:67814013-67814032 None:intergenic 45.0%
TCCCCAAAAGACTTAAAGGG+TGG - chr3_4:67814013-67814032 Msa0516320:intron 45.0%
!! CTGTTACTTGGTGGTGGAAC+TGG + chr3_4:67808780-67808799 None:intergenic 50.0%
TGGGGGATGGACATGTATCT+TGG - chr3_4:67809712-67809731 Msa0516320:intron 50.0%
GGGGGATGGACATGTATCTT+GGG - chr3_4:67809713-67809732 Msa0516320:intron 50.0%
TATGATCATCCGACAGTCCC+AGG - chr3_4:67809954-67809973 Msa0516320:intron 50.0%
CAAGATGATCTACGCTCGCT+TGG - chr3_4:67810144-67810163 Msa0516320:intron 50.0%
CTAACTCAAGCGGTGAGGAT+TGG + chr3_4:67810511-67810530 None:intergenic 50.0%
CAAAGCTAACTCAAGCGGTG+AGG + chr3_4:67810516-67810535 None:intergenic 50.0%
! CTCACCGCTTGAGTTAGCTT+TGG - chr3_4:67810514-67810533 Msa0516320:CDS 50.0%
!! ACCGCTTGAGTTAGCTTTGG+AGG - chr3_4:67810517-67810536 Msa0516320:CDS 50.0%
CCTCCTCCTCAGTTGTAATG+TGG + chr3_4:67810869-67810888 None:intergenic 50.0%
CCACATTACAACTGAGGAGG+AGG - chr3_4:67810866-67810885 Msa0516320:intron 50.0%
TGCCAGGTGAAGACTCATCA+TGG - chr3_4:67810936-67810955 Msa0516320:intron 50.0%
CTCCATGATGAGTCTTCACC+TGG + chr3_4:67810941-67810960 None:intergenic 50.0%
GAAGACTCATCATGGAGCAC+AGG - chr3_4:67810944-67810963 Msa0516320:intron 50.0%
TGCCTCTATTGGAAGGCCTT+TGG - chr3_4:67811381-67811400 Msa0516320:CDS 50.0%
GAGTGTCCGGCTGGATTTAT+TGG - chr3_4:67811604-67811623 Msa0516320:CDS 50.0%
!! TCTCTGAGGCCATAACCACT+TGG + chr3_4:67811682-67811701 None:intergenic 50.0%
AACTTTGCCCATCCTGGGAT+AGG - chr3_4:67811932-67811951 Msa0516320:intron 50.0%
GGCATTGTCAGACCCTGTTT+AGG + chr3_4:67812106-67812125 None:intergenic 50.0%
TTGGTACAGTTACGGTACGG+CGG + chr3_4:67813302-67813321 None:intergenic 50.0%
AGTACGAGTACCAGTACCTG+CGG - chr3_4:67813369-67813388 Msa0516320:intron 50.0%
TTGCAAAACGTACCCGTACC+GGG + chr3_4:67813399-67813418 None:intergenic 50.0%
! GGGTGGTACAACCGTTTTCT+TGG - chr3_4:67814030-67814049 Msa0516320:intron 50.0%
TGGAGCTACGAGTGAGTCTG+TGG + chr3_4:67808739-67808758 None:intergenic 55.0%
ACTGCGGGAACAAGACGAAC+TGG - chr3_4:67809178-67809197 Msa0516320:three_prime_UTR 55.0%
CTGCGGGAACAAGACGAACT+GGG - chr3_4:67809179-67809198 Msa0516320:three_prime_UTR 55.0%
TGTCCAAGGGTCTTCGGCAT+TGG - chr3_4:67809858-67809877 Msa0516320:intron 55.0%
TGCTGCTGGTATTCTGTGCC+AGG - chr3_4:67810920-67810939 Msa0516320:intron 55.0%
GGCTAGGTGCCTCTATTGGA+AGG - chr3_4:67811374-67811393 Msa0516320:CDS 55.0%
CACTCCCCATTGGGCAATCT+TGG + chr3_4:67811589-67811608 None:intergenic 55.0%
!! ATTGCCCAATGGGGAGTGTC+CGG - chr3_4:67811591-67811610 Msa0516320:CDS 55.0%
GATTCTGTGTTGCACGGGTG+CGG - chr3_4:67812823-67812842 Msa0516320:CDS 55.0%
ATTCTGTGTTGCACGGGTGC+GGG - chr3_4:67812824-67812843 Msa0516320:CDS 55.0%
TACGGTACCCGGTAAGGGTA+CGG - chr3_4:67812847-67812866 Msa0516320:CDS 55.0%
GTACGGCGGTGGTACTCTTA+GGG + chr3_4:67813288-67813307 None:intergenic 55.0%
GCCGTACCGTAACTGTACCA+AGG - chr3_4:67813301-67813320 Msa0516320:intron 55.0%
GCACCAATGCCGAAGACCCT+TGG + chr3_4:67809864-67809883 None:intergenic 60.0%
!! GTCTTCGGCATTGGTGCCAG+TGG - chr3_4:67809867-67809886 Msa0516320:intron 60.0%
!! TAGAGGCACCTAGCCCGTGA+AGG + chr3_4:67811369-67811388 None:intergenic 60.0%
!! CACGGGCTAGGTGCCTCTAT+TGG - chr3_4:67811370-67811389 Msa0516320:CDS 60.0%
! TACCCGGTAAGGGTACGGTG+CGG - chr3_4:67812852-67812871 Msa0516320:CDS 60.0%
TACCCGCACCGTACCCTTAC+CGG + chr3_4:67812858-67812877 None:intergenic 60.0%
! GTAAGGGTACGGTGCGGGTA+CGG - chr3_4:67812858-67812877 Msa0516320:CDS 60.0%
! TAAGGGTACGGTGCGGGTAC+GGG - chr3_4:67812859-67812878 Msa0516320:CDS 60.0%
GGTACGGCGGTGGTACTCTT+AGG + chr3_4:67813289-67813308 None:intergenic 60.0%
GTACAGTTACGGTACGGCGG+TGG + chr3_4:67813299-67813318 None:intergenic 60.0%
! ACCAGTACCTGCGGAGTACC+CGG - chr3_4:67813378-67813397 Msa0516320:intron 60.0%
! TACCTGCGGAGTACCCGGTA+CGG - chr3_4:67813383-67813402 Msa0516320:intron 60.0%
AGCTGTGGCCTTCACGGGCT+AGG - chr3_4:67811358-67811377 Msa0516320:CDS 65.0%
CCAGCCGGACACTCCCCATT+GGG + chr3_4:67811598-67811617 None:intergenic 65.0%
TCCAGCCGGACACTCCCCAT+TGG + chr3_4:67811599-67811618 None:intergenic 65.0%
GTGTTGCACGGGTGCGGGTA+CGG - chr3_4:67812829-67812848 Msa0516320:CDS 65.0%
TGCGGGTACGGTACCCGGTA+AGG - chr3_4:67812841-67812860 Msa0516320:CDS 65.0%
GCGGGTACGGTACCCGGTAA+GGG - chr3_4:67812842-67812861 Msa0516320:CDS 65.0%
! ACCCGGTAAGGGTACGGTGC+GGG - chr3_4:67812853-67812872 Msa0516320:CDS 65.0%
ACCCGCACCGTACCCTTACC+GGG + chr3_4:67812857-67812876 None:intergenic 65.0%
ACCGGGTACTCCGCAGGTAC+TGG + chr3_4:67813382-67813401 None:intergenic 65.0%
! ACCTGCGGAGTACCCGGTAC+GGG - chr3_4:67813384-67813403 Msa0516320:intron 65.0%
!! CCCAATGGGGAGTGTCCGGC+TGG - chr3_4:67811595-67811614 Msa0516320:CDS 70.0%
ACGGGTGCGGGTACGGTACC+CGG - chr3_4:67812836-67812855 Msa0516320:CDS 70.0%
ACCCGTACCGGGTACTCCGC+AGG + chr3_4:67813388-67813407 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67808718 67814301 67808718 ID=Msa0516320;Name=Msa0516320
chr3_4 mRNA 67808718 67814301 67808718 ID=Msa0516320-mRNA-1;Parent=Msa0516320;Name=Msa0516320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=53|0.85|0.87|1|0.85|0.87|8|579|445
chr3_4 exon 67808718 67809326 67808718 ID=Msa0516320-mRNA-1:exon:17775;Parent=Msa0516320-mRNA-1
chr3_4 exon 67810466 67810688 67810466 ID=Msa0516320-mRNA-1:exon:17774;Parent=Msa0516320-mRNA-1
chr3_4 exon 67811171 67811491 67811171 ID=Msa0516320-mRNA-1:exon:17773;Parent=Msa0516320-mRNA-1
chr3_4 exon 67811543 67811770 67811543 ID=Msa0516320-mRNA-1:exon:17772;Parent=Msa0516320-mRNA-1
chr3_4 exon 67811974 67812211 67811974 ID=Msa0516320-mRNA-1:exon:17771;Parent=Msa0516320-mRNA-1
chr3_4 exon 67812767 67812881 67812767 ID=Msa0516320-mRNA-1:exon:17770;Parent=Msa0516320-mRNA-1
chr3_4 exon 67813044 67813187 67813044 ID=Msa0516320-mRNA-1:exon:17769;Parent=Msa0516320-mRNA-1
chr3_4 exon 67814210 67814301 67814210 ID=Msa0516320-mRNA-1:exon:17768;Parent=Msa0516320-mRNA-1
chr3_4 five_prime_UTR 67814249 67814301 67814249 ID=Msa0516320-mRNA-1:five_prime_utr;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67814210 67814248 67814210 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67813044 67813187 67813044 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67812767 67812881 67812767 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67811974 67812211 67811974 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67811543 67811770 67811543 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67811171 67811491 67811171 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67810466 67810688 67810466 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 CDS 67809297 67809326 67809297 ID=Msa0516320-mRNA-1:cds;Parent=Msa0516320-mRNA-1
chr3_4 three_prime_UTR 67808718 67809296 67808718 ID=Msa0516320-mRNA-1:three_prime_utr;Parent=Msa0516320-mRNA-1
Gene Sequence

>Msa0516320

ATGTTTCCAGTTCCACCACCAAGTAACAGCAACAACCAGCATTTGGTTTATACAAAGCCATTATCTGTCCAAGGGTCTTCGGCATTGGTGCCAGTGGAATTGAATGAAAACTTCACGGACACAAAGGACAATGTGAAAAATGGAGAATTTACAAAAGCAGATATGATCATCCGACAGTCCCAGAAACTACAAGATGATCTACGCTCGCTTGGGATGAAAATTAAGCAGCATGAGGACAAACTGAGTCTTTTGACAACTGAAAAAAGCCAATTAGATGACGCCATTCTTCATTTGCAAGTTGCTATTGGGAAATCAAAGTCTTCAAGTACAACCAAGATTGGTAATGCGGACGATCTCCACATTACAACTGAGGAGGAGGTAAATAAACAGATAATGCAGCATGAAAAATCTGCTGCTGGTATTCTGTGCCAGGTGAAGACTCATCATGGAGCACAGGCTTCTCTTCTTGCACTAACACAGGATGTTGTTGGTGTTGTTGCTATGCTAGGAAAAGTTGAGGATGACAATCTTAGCAGACTTTTCTCGGAGTATCTTGGAGTGGAGACTATGTTGGCAATTGTTTGTAGAACTTATGAAGGAGTTAAAGCTCTTGAATTGTATGATAAGGAAGGCAGCATAAATAAAAGCTGTGGCCTTCACGGGCTAGGTGCCTCTATTGGAAGGCCTTTGGATGGTCGATTTCTAGTGATATGTCTTGAATCTCTAAGGCATGAATACAAGAATCATGTTTTTGTCTTTTATTTGCCTTATGCTGGTAAATATGTGGTTGATGACTCACAACGAAAGTTGGACATCTTAAATCCAAGATTGCCCAATGGGGAGTGTCCGGCTGGATTTATTGGGTTTGCTGTGAATATGATTAATATAGACAACCGGAACCTATTTTGTCTAACGCCAAGTGGTTATGGCCTCAGAGAAACTCTGTTTTATAATCTCTTTTCTCGTCTACAAGTATACAAGACAAGGGCTGAAATGATACGAGCACTTCCTTGCATAAGTGATGGTGCTCTTTCTTTAGATGGAGGAATGATTAGGAGTTGTGGTGTATTTTCCTTGGGTAATAGGGAAGCTGTTGATGTGAGATTCCCCAGACCAGAAAAAACATTGGGGCTTGATCAGCACATTGAAATGGAAAGGCAAATGATGAATACCCAATGGAAGAAGGACAAAGTTTTTGACGATTTAAAAAGAGAAAAGACAATGTTGGACATGGCAAAGTTCAGTTTCAATAAGAAGAAGAGCGACTTTCTTAAGTATTTGGCTTCAAGTTCATCATACGCAACTCAGGTTCAGACTGCTCCTTACCTACATCAATGA

Protein sequence

>Msa0516320

MFPVPPPSNSNNQHLVYTKPLSVQGSSALVPVELNENFTDTKDNVKNGEFTKADMIIRQSQKLQDDLRSLGMKIKQHEDKLSLLTTEKSQLDDAILHLQVAIGKSKSSSTTKIGNADDLHITTEEEVNKQIMQHEKSAAGILCQVKTHHGAQASLLALTQDVVGVVAMLGKVEDDNLSRLFSEYLGVETMLAIVCRTYEGVKALELYDKEGSINKSCGLHGLGASIGRPLDGRFLVICLESLRHEYKNHVFVFYLPYAGKYVVDDSQRKLDILNPRLPNGECPAGFIGFAVNMINIDNRNLFCLTPSGYGLRETLFYNLFSRLQVYKTRAEMIRALPCISDGALSLDGGMIRSCGVFSLGNREAVDVRFPRPEKTLGLDQHIEMERQMMNTQWKKDKVFDDLKREKTMLDMAKFSFNKKKSDFLKYLASSSSYATQVQTAPYLHQ*