AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004860 MtrunA17_Chr1g0153141 82.558 172 13 4 65 219 118 289 9.34e-88 263
Msa0004860 MtrunA17_Chr1g0151261 40.278 216 102 9 60 252 126 337 1.56e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004860 AT5G52010.1 37.870 169 81 7 64 211 150 315 8.59e-23 96.3
Msa0004860 AT4G12240.1 29.592 196 110 6 63 232 114 307 3.02e-11 63.2

Find 120 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTGGGGTAGGGATTT+GGG 0.147483 1_1:-7346596 Msa0004860:CDS
AACAACATCAACAGCCTTTA+TGG 0.151097 1_1:-7347032 Msa0004860:CDS
GGATTATTGGGGTAGGGATT+TGG 0.178313 1_1:-7346597 Msa0004860:CDS
TTGTTGTTGTTGGGGATTAT+TGG 0.205625 1_1:-7346610 Msa0004860:CDS
TTCTGTACTGCTGAAGTTTC+CGG 0.209430 1_1:-7345991 Msa0004860:three_prime_UTR
ATGATGTTAACCGGATAATT+TGG 0.215343 1_1:-7343270 Msa0004860:three_prime_UTR
ATGCTGATTTGTGGCTTCTT+TGG 0.222848 1_1:-7346568 Msa0004860:CDS
AGAAAATGTTGTAGAAAGTT+AGG 0.240520 1_1:-7346649 Msa0004860:intron
TGGGGTTGATTCATTGGTTT+TGG 0.248478 1_1:-7346693 Msa0004860:CDS
GCTGGATTTGGAATGGCTTC+GGG 0.261557 1_1:-7346809 Msa0004860:CDS
TGTTGTTGTTGGGGATTATT+GGG 0.261710 1_1:-7346609 Msa0004860:CDS
TATTAAATTGAAACGTTCTA+AGG 0.265804 1_1:-7346890 Msa0004860:CDS
ACACGGCAGAGAAAGGAATT+AGG 0.272033 1_1:+7347000 None:intergenic
CAGTTCCAACGACAAGAAAA+AGG 0.278063 1_1:+7347057 None:intergenic
GAGTGGTGGGGTTGATTCAT+TGG 0.283377 1_1:-7346699 Msa0004860:CDS
CGAAGAAATCACTATTGTTA+TGG 0.284732 1_1:-7346323 Msa0004860:three_prime_UTR
GCTCCACTTAAGGCTGGATT+TGG 0.286717 1_1:-7346821 Msa0004860:CDS
AGGAACAGTGGAAGAGGATT+TGG 0.291982 1_1:-7346507 Msa0004860:CDS
GGCTGGATTTGGAATGGCTT+CGG 0.304498 1_1:-7346810 Msa0004860:CDS
AGCTCAATGGCGCTATAAAC+AGG 0.307628 1_1:+7343478 None:intergenic
GTGATCTCTTTGAGCTTTAC+CGG 0.311285 1_1:+7343173 None:intergenic
ATTGAAGATTATTATTTCAT+AGG 0.322017 1_1:-7343378 Msa0004860:three_prime_UTR
AAACGAAGCTAGACTGAATT+GGG 0.325669 1_1:-7346179 Msa0004860:three_prime_UTR
TAAACGAAGCTAGACTGAAT+TGG 0.332936 1_1:-7346180 Msa0004860:three_prime_UTR
GAAGAAATCACTATTGTTAT+GGG 0.334101 1_1:-7346322 Msa0004860:three_prime_UTR
CTTTGGATTCTTGTTGTGAA+TGG 0.342263 1_1:-7346551 Msa0004860:CDS
CAGAGAAAGGAATTAGGGTT+AGG 0.348098 1_1:+7347006 None:intergenic
ATTATTGGGGTAGGGATTTG+GGG 0.351048 1_1:-7346595 Msa0004860:CDS
AGAGGATTTGGATGATGAAT+TGG 0.363809 1_1:-7346495 Msa0004860:CDS
TCCCGATTCACGTGCTTTAG+AGG 0.367323 1_1:+7347174 None:intergenic
AAAGTAGAAATTGTTGTTGT+TGG 0.377692 1_1:-7346620 Msa0004860:CDS
CTCAAAATTACCAAATTATC+CGG 0.400802 1_1:+7343260 None:intergenic
TTGGAATGGCTTCGGGGTTG+CGG 0.403725 1_1:-7346802 Msa0004860:CDS
CTGCAATAATGCTCCACTTA+AGG 0.407663 1_1:-7346831 Msa0004860:CDS
TGCCTCTAAAGCACGTGAAT+CGG 0.412355 1_1:-7347176 Msa0004860:CDS
ACAGAGGAATTTCACTGAAT+AGG 0.418923 1_1:+7347149 None:intergenic
TTGTTATGGGATGCGCTATA+TGG 0.419334 1_1:-7346309 Msa0004860:three_prime_UTR
GTGAAGATTGTGACGGTTCA+TGG 0.424458 1_1:-7346764 Msa0004860:CDS
AAGTAGAAATTGTTGTTGTT+GGG 0.425403 1_1:-7346619 Msa0004860:CDS
TCACGTGCTTTAGAGGCATT+AGG 0.430867 1_1:+7347181 None:intergenic
GCCTCTAAAGCACGTGAATC+GGG 0.432430 1_1:-7347175 Msa0004860:CDS
CACGGCAGAGAAAGGAATTA+GGG 0.442544 1_1:+7347001 None:intergenic
ATTTCATTCGAAGGAATCAT+AGG 0.443246 1_1:-7346864 Msa0004860:intron
GAAAATGTTGTAGAAAGTTA+GGG 0.445508 1_1:-7346648 Msa0004860:intron
TTGTTGGGGATTATTGGGGT+AGG 0.453010 1_1:-7346604 Msa0004860:CDS
ATTGGCAGATAGGCGATTAG+AGG 0.456696 1_1:-7343662 Msa0004860:intron
TGGGGAGGAATGCTGATTTG+TGG 0.458714 1_1:-7346577 Msa0004860:CDS
GATGGGAGGAACAGTGGAAG+AGG 0.460550 1_1:-7346513 Msa0004860:CDS
AGAATGGATTATCGAAATTG+AGG 0.466477 1_1:-7346148 Msa0004860:three_prime_UTR
CAATGCGACATGATGTTAAC+CGG 0.468038 1_1:-7343279 Msa0004860:three_prime_UTR
GACAATGTTATGGCACTACT+TGG 0.468181 1_1:+7347211 None:intergenic
GATGATGGGTATATAATAGA+TGG 0.469192 1_1:-7346449 Msa0004860:CDS
TTAGGGTTAGGGTTCCATAA+AGG 0.469727 1_1:+7347018 None:intergenic
CTGAAGTTTCCGGCTTATGA+TGG 0.470810 1_1:-7345981 Msa0004860:three_prime_UTR
GTTGTGTAGCGGTAACTTCA+AGG 0.475420 1_1:-7346071 Msa0004860:three_prime_UTR
TGTTGGGGATTATTGGGGTA+GGG 0.476786 1_1:-7346603 Msa0004860:CDS
TGGAAATGTTGAATATTTGA+TGG 0.476818 1_1:-7346531 Msa0004860:CDS
GATGGAGAACAAGATGAAGA+TGG 0.483387 1_1:-7346431 Msa0004860:CDS
AGTGGGAGATGAGGAGTGGT+GGG 0.484755 1_1:-7346712 Msa0004860:CDS
ATAAAGGCTGTTGATGTTGT+TGG 0.486970 1_1:+7347034 None:intergenic
AGTTGAGTTATGTTGAATTG+AGG 0.487258 1_1:-7346122 Msa0004860:three_prime_UTR
ATTCCAAATCCAGCCTTAAG+TGG 0.497244 1_1:+7346818 None:intergenic
AAGTGGGAGATGAGGAGTGG+TGG 0.497507 1_1:-7346713 Msa0004860:CDS
AGCAACACCGATGAACATAA+TGG 0.502343 1_1:-7343233 Msa0004860:three_prime_UTR
AGAGAAAGGAATTAGGGTTA+GGG 0.502994 1_1:+7347007 None:intergenic
AGGTATAAAAGACAATGTTA+TGG 0.509953 1_1:+7347201 None:intergenic
CTAAGGTTAATTTCATTCGA+AGG 0.511091 1_1:-7346873 Msa0004860:CDS
TGCTGATTCGTCGTTGAAGT+GGG 0.511671 1_1:-7346729 Msa0004860:CDS
TATGATGATTATGATGATGA+TGG 0.514858 1_1:-7346464 Msa0004860:CDS
ACCACAGACACGGCAGAGAA+AGG 0.521644 1_1:+7346993 None:intergenic
TCCTTTCTCTGCCGTGTCTG+TGG 0.525164 1_1:-7346994 Msa0004860:CDS
ACTTAAGGCTGGATTTGGAA+TGG 0.529534 1_1:-7346816 Msa0004860:CDS
ATGGAGAACAAGATGAAGAT+GGG 0.532185 1_1:-7346430 Msa0004860:CDS
GTTGTTGTTGGGGATTATTG+GGG 0.532767 1_1:-7346608 Msa0004860:CDS
AAGTAGACTCGAGCAAGAAT+CGG 0.534729 1_1:+7343573 None:intergenic
ATTGGGGTAGGGATTTGGGG+AGG 0.535150 1_1:-7346592 Msa0004860:CDS
CTGCTGATTCGTCGTTGAAG+TGG 0.542933 1_1:-7346730 Msa0004860:CDS
GCTTCGGGGTTGCGGCGAGG+TGG 0.549029 1_1:-7346794 Msa0004860:CDS
TTGTGTAGCGGTAACTTCAA+GGG 0.551607 1_1:-7346070 Msa0004860:three_prime_UTR
GGTTTCATTGTGGTTATCTG+AGG 0.554704 1_1:-7346049 Msa0004860:three_prime_UTR
CGGCAATCCATTATGTTCAT+CGG 0.555524 1_1:+7343226 None:intergenic
ACATGATTTCACAAGCTCAA+TGG 0.556304 1_1:+7343465 None:intergenic
CGTCGTTGAAGTGGGAGATG+AGG 0.561588 1_1:-7346721 Msa0004860:CDS
CTGGATTTGGAATGGCTTCG+GGG 0.563030 1_1:-7346808 Msa0004860:CDS
AGTAGAAATTGTTGTTGTTG+GGG 0.564552 1_1:-7346618 Msa0004860:CDS
GGAAATGTTGAATATTTGAT+GGG 0.569673 1_1:-7346530 Msa0004860:CDS
GATTGTGACGGTTCATGGTA+AGG 0.571325 1_1:-7346759 Msa0004860:CDS
AATAATGCTCCACTTAAGGC+TGG 0.571589 1_1:-7346827 Msa0004860:CDS
ATGGCACTACTTGGTAACAT+AGG 0.579546 1_1:+7347220 None:intergenic
ATATTTGATGGGAGGAACAG+TGG 0.582987 1_1:-7346519 Msa0004860:CDS
GTCTACTTAATATAGTATGT+AGG 0.589902 1_1:-7343558 Msa0004860:three_prime_UTR
ATGGCTTCGGGGTTGCGGCG+AGG 0.597398 1_1:-7346797 Msa0004860:CDS
TTGGCAGATAGGCGATTAGA+GGG 0.601372 1_1:-7343661 Msa0004860:intron
CAAAACATACCATCATAAGC+CGG 0.603774 1_1:+7345972 None:intergenic
GAAACTTCAGCAGTACAGAA+TGG 0.604469 1_1:+7345994 None:intergenic
CGGTTAACATCATGTCGCAT+TGG 0.606219 1_1:+7343280 None:intergenic
ATGATGATTATGATGATGAT+GGG 0.607293 1_1:-7346463 Msa0004860:CDS
TTGATTATAATGTTGTGTAG+CGG 0.608015 1_1:-7346082 Msa0004860:three_prime_UTR
GCTCAATGGCGCTATAAACA+GGG 0.612239 1_1:+7343479 None:intergenic
TAACTTCAAGGGTTTCATTG+TGG 0.617421 1_1:-7346059 Msa0004860:three_prime_UTR
AATGTTGTAGAAAGTTAGGG+AGG 0.621987 1_1:-7346645 Msa0004860:intron
AACGAAGCTAGACTGAATTG+GGG 0.626874 1_1:-7346178 Msa0004860:three_prime_UTR
AGCTAAGTAGATCTAGACAA+TGG 0.627099 1_1:-7343510 Msa0004860:three_prime_UTR
TGCATTCGTAACCACAGACA+CGG 0.628222 1_1:+7346983 None:intergenic
AATGTTGAATATTTGATGGG+AGG 0.632949 1_1:-7346527 Msa0004860:CDS
GTATTTCCAATTGTGTATCG+CGG 0.639993 1_1:+7346208 None:intergenic
TAAAGCTCAAAGAGATCACA+AGG 0.640822 1_1:-7343169 None:intergenic
GACGGTTCATGGTAAGGTGA+AGG 0.641007 1_1:-7346753 Msa0004860:CDS
GTGGGAGATGAGGAGTGGTG+GGG 0.643449 1_1:-7346711 Msa0004860:CDS
GAAGCTAGACTGAATTGGGG+GGG 0.650361 1_1:-7346175 Msa0004860:three_prime_UTR
ATAGGCGATTAGAGGGCATG+TGG 0.657982 1_1:-7343654 Msa0004860:three_prime_UTR
TGCATAATCTTCCATCGACT+AGG 0.659164 1_1:+7343624 None:intergenic
CGAAGCTAGACTGAATTGGG+GGG 0.663694 1_1:-7346176 Msa0004860:three_prime_UTR
ACGAAGCTAGACTGAATTGG+GGG 0.667187 1_1:-7346177 Msa0004860:three_prime_UTR
TTGAAGTGGGAGATGAGGAG+TGG 0.667462 1_1:-7346716 Msa0004860:CDS
CTTGAAGTGAATGTTGACAT+CGG 0.681461 1_1:+7346951 None:intergenic
TCCATGTTAGAAAAGCTCAC+CGG 0.683304 1_1:-7343192 Msa0004860:three_prime_UTR
AGTGCTATTACAGCTGAACG+AGG 0.699281 1_1:-7343601 Msa0004860:three_prime_UTR
ACATCACATCTGAAAAGACG+AGG 0.703168 1_1:+7347110 None:intergenic
GTGCTATTACAGCTGAACGA+GGG 0.725386 1_1:-7343600 Msa0004860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAAGAAAAAAAATAT+AGG + chr1_1:7345418-7345437 None:intergenic 10.0%
!!! TAACTATTTTTTTTTTGAAA+CGG + chr1_1:7345640-7345659 None:intergenic 10.0%
!! TTGAAAAAAAAAAAATTAGA+AGG - chr1_1:7346548-7346567 Msa0004860:CDS 10.0%
!! ATCTATTTATCAATTAATCA+TGG + chr1_1:7344527-7344546 None:intergenic 15.0%
!! TCAATAGTAATAATATTGTT+AGG - chr1_1:7344698-7344717 Msa0004860:intron 15.0%
!!! ATTTTTCTATATATGCATTT+CGG - chr1_1:7344957-7344976 Msa0004860:intron 15.0%
!!! TCTGAATCATTTTAAAAATT+GGG - chr1_1:7345299-7345318 Msa0004860:intron 15.0%
!!! TTAATGAATTTTGATTCATT+TGG - chr1_1:7346955-7346974 Msa0004860:CDS 15.0%
!! ATTGAAGATTATTATTTCAT+AGG - chr1_1:7347011-7347030 Msa0004860:CDS 15.0%
!! TATTAAATTGAAACGTTCTA+AGG - chr1_1:7343499-7343518 Msa0004860:three_prime_UTR 20.0%
!!! TTATATGTCAATTTTGTTGT+TGG - chr1_1:7344582-7344601 Msa0004860:intron 20.0%
!! ATATGATTCTTTAGTTATGA+AGG - chr1_1:7344672-7344691 Msa0004860:intron 20.0%
!!! TTTTTCTATATATGCATTTC+GGG - chr1_1:7344958-7344977 Msa0004860:intron 20.0%
!!! TTTTCTTCATATATGCTTTT+CGG - chr1_1:7345006-7345025 Msa0004860:intron 20.0%
!!! GTCTGAATCATTTTAAAAAT+TGG - chr1_1:7345298-7345317 Msa0004860:intron 20.0%
!!! CTGAATCATTTTAAAAATTG+GGG - chr1_1:7345300-7345319 Msa0004860:intron 20.0%
!!! TGAATCATTTTAAAAATTGG+GGG - chr1_1:7345301-7345320 Msa0004860:intron 20.0%
!!! TAAATTGTAGCTTTAGAAAT+AGG - chr1_1:7345341-7345360 Msa0004860:intron 20.0%
!!! AAATTGTAGCTTTAGAAATA+GGG - chr1_1:7345342-7345361 Msa0004860:intron 20.0%
!!! TATAGGCTTAAATGTTATTT+TGG + chr1_1:7345401-7345420 None:intergenic 20.0%
!! AATATATGATAAGGCATATT+TGG - chr1_1:7345706-7345725 Msa0004860:intron 20.0%
!! AATACCAAGATAAAAAGATA+AGG + chr1_1:7345881-7345900 None:intergenic 20.0%
!!! TTATCTTTTTATCTTGGTAT+TGG - chr1_1:7345880-7345899 Msa0004860:intron 20.0%
!! TAATTGTAAATGAAAGTTGT+GGG + chr1_1:7346002-7346021 None:intergenic 20.0%
!!! ATCTCAATGTCATTTTATAT+GGG + chr1_1:7346108-7346127 None:intergenic 20.0%
!!! TATCTCAATGTCATTTTATA+TGG + chr1_1:7346109-7346128 None:intergenic 20.0%
!! TATAAAATGACATTGAGATA+TGG - chr1_1:7346109-7346128 Msa0004860:three_prime_UTR 20.0%
!! ATAAAATGACATTGAGATAT+GGG - chr1_1:7346110-7346129 Msa0004860:three_prime_UTR 20.0%
!! TATAAAGCAGTTAATCATAA+AGG + chr1_1:7346522-7346541 None:intergenic 20.0%
!!! ATTATCCTATTTTCTGAAAT+TGG - chr1_1:7346709-7346728 Msa0004860:CDS 20.0%
! AGGTATAAAAGACAATGTTA+TGG + chr1_1:7343191-7343210 None:intergenic 25.0%
! AGAAAATGTTGTAGAAAGTT+AGG - chr1_1:7343740-7343759 Msa0004860:intron 25.0%
! GAAAATGTTGTAGAAAGTTA+GGG - chr1_1:7343741-7343760 Msa0004860:intron 25.0%
!! AAAGTAGAAATTGTTGTTGT+TGG - chr1_1:7343769-7343788 Msa0004860:intron 25.0%
!! AAGTAGAAATTGTTGTTGTT+GGG - chr1_1:7343770-7343789 Msa0004860:intron 25.0%
! TGGAAATGTTGAATATTTGA+TGG - chr1_1:7343858-7343877 Msa0004860:intron 25.0%
! GGAAATGTTGAATATTTGAT+GGG - chr1_1:7343859-7343878 Msa0004860:intron 25.0%
!! TATGATGATTATGATGATGA+TGG - chr1_1:7343925-7343944 Msa0004860:intron 25.0%
!! ATGATGATTATGATGATGAT+GGG - chr1_1:7343926-7343945 Msa0004860:intron 25.0%
!! TTTTCAGTATTGTCAAATAG+CGG - chr1_1:7344008-7344027 Msa0004860:intron 25.0%
! GAAGAAATCACTATTGTTAT+GGG - chr1_1:7344067-7344086 Msa0004860:intron 25.0%
! TTGATTATAATGTTGTGTAG+CGG - chr1_1:7344307-7344326 Msa0004860:intron 25.0%
! AGAAGAAAAACAAAACGAAA+AGG + chr1_1:7344464-7344483 None:intergenic 25.0%
! AAATAGATTGTAGTTTGAGA+TGG - chr1_1:7344539-7344558 Msa0004860:intron 25.0%
!! TTTTGCCTCATTTACAATTT+TGG - chr1_1:7344879-7344898 Msa0004860:intron 25.0%
! CAAATTCGTGGATTTAAAAA+TGG + chr1_1:7344910-7344929 None:intergenic 25.0%
!! ATGTTGAACATTTTCAAAAC+TGG + chr1_1:7344939-7344958 None:intergenic 25.0%
!! TTTCTTCATATATGCTTTTC+GGG - chr1_1:7345007-7345026 Msa0004860:intron 25.0%
! GATGTAAAATATTGTCTATG+TGG + chr1_1:7345114-7345133 None:intergenic 25.0%
! ATTCAACCTCAAAATGTATA+TGG - chr1_1:7345268-7345287 Msa0004860:intron 25.0%
! TTCAACCTCAAAATGTATAT+GGG - chr1_1:7345269-7345288 Msa0004860:intron 25.0%
!!! GAATCATTTTAAAAATTGGG+GGG - chr1_1:7345302-7345321 Msa0004860:intron 25.0%
!!! AATCATTTTAAAAATTGGGG+GGG - chr1_1:7345303-7345322 Msa0004860:intron 25.0%
! TAGTGAATGAGACAAAATAA+AGG - chr1_1:7345373-7345392 Msa0004860:intron 25.0%
! AGTGAATGAGACAAAATAAA+GGG - chr1_1:7345374-7345393 Msa0004860:intron 25.0%
!! TAGGCTTAAATGTAATTTTC+AGG + chr1_1:7345472-7345491 None:intergenic 25.0%
! GTTAACTAATAAAATCCACT+AGG + chr1_1:7345518-7345537 None:intergenic 25.0%
! GATATTAATACAAGTCTACA+AGG + chr1_1:7345600-7345619 None:intergenic 25.0%
! ACCCTTGAAAATATATGATA+AGG - chr1_1:7345697-7345716 Msa0004860:intron 25.0%
!! GCCTTATCATATATTTTCAA+GGG + chr1_1:7345701-7345720 None:intergenic 25.0%
!! TGCCTTATCATATATTTTCA+AGG + chr1_1:7345702-7345721 None:intergenic 25.0%
! ACAACTAGTGTGAAAATTAA+AGG - chr1_1:7345807-7345826 Msa0004860:intron 25.0%
! TCATGTAGATAAATCATATG+TGG + chr1_1:7345837-7345856 None:intergenic 25.0%
! CTAATTGTAAATGAAAGTTG+TGG + chr1_1:7346003-7346022 None:intergenic 25.0%
!!! ACATGAAATGTAAGTTTTGT+AGG - chr1_1:7346036-7346055 Msa0004860:three_prime_UTR 25.0%
! TAAAATGACATTGAGATATG+GGG - chr1_1:7346111-7346130 Msa0004860:three_prime_UTR 25.0%
!!! TGATTTTTTGTTATCATGAG+TGG - chr1_1:7346177-7346196 Msa0004860:three_prime_UTR 25.0%
!!! GATTTTTTGTTATCATGAGT+GGG - chr1_1:7346178-7346197 Msa0004860:three_prime_UTR 25.0%
! TTAATTATGAATTTCACCTG+TGG - chr1_1:7346274-7346293 Msa0004860:three_prime_UTR 25.0%
! AAAAATACAACTCAAAGAAC+CGG + chr1_1:7346365-7346384 None:intergenic 25.0%
! TAACAATACAATTCATATCG+TGG + chr1_1:7346644-7346663 None:intergenic 25.0%
! GTCTACTTAATATAGTATGT+AGG - chr1_1:7346831-7346850 Msa0004860:CDS 25.0%
! CTCAAAATTACCAAATTATC+CGG + chr1_1:7347132-7347151 None:intergenic 25.0%
AGAATAATTCCCATCTCATT+AGG - chr1_1:7343304-7343323 Msa0004860:three_prime_UTR 30.0%
CTAAGGTTAATTTCATTCGA+AGG - chr1_1:7343516-7343535 Msa0004860:three_prime_UTR 30.0%
ATTTCATTCGAAGGAATCAT+AGG - chr1_1:7343525-7343544 Msa0004860:three_prime_UTR 30.0%
!! TGTTTTTGTGAAGATTGTGA+CGG - chr1_1:7343618-7343637 Msa0004860:three_prime_UTR 30.0%
!!! TGATTCATTGGTTTTGGTTT+CGG - chr1_1:7343702-7343721 Msa0004860:intron 30.0%
! CTACAACATTTTCTCAAACA+CGG + chr1_1:7343734-7343753 None:intergenic 30.0%
! AGTAGAAATTGTTGTTGTTG+GGG - chr1_1:7343771-7343790 Msa0004860:intron 30.0%
AATGTTGAATATTTGATGGG+AGG - chr1_1:7343862-7343881 Msa0004860:intron 30.0%
!! GATGATGGGTATATAATAGA+TGG - chr1_1:7343940-7343959 Msa0004860:intron 30.0%
CGAAGAAATCACTATTGTTA+TGG - chr1_1:7344066-7344085 Msa0004860:intron 30.0%
!! AGAATGGATTATCGAAATTG+AGG - chr1_1:7344241-7344260 Msa0004860:intron 30.0%
AGTTGAGTTATGTTGAATTG+AGG - chr1_1:7344267-7344286 Msa0004860:intron 30.0%
! TTATGATGGTATGTTTTGCA+TGG - chr1_1:7344422-7344441 Msa0004860:intron 30.0%
GAAGTTATTTGTCTTGACTT+TGG - chr1_1:7344734-7344753 Msa0004860:intron 30.0%
!!! TGTTGTTTTGTTGATTTGAG+TGG - chr1_1:7344790-7344809 Msa0004860:intron 30.0%
!!! TTTTGTTGATTTGAGTGGAT+TGG - chr1_1:7344795-7344814 Msa0004860:intron 30.0%
ATTGGAGTTTACTTGGAAAT+CGG - chr1_1:7344813-7344832 Msa0004860:intron 30.0%
GTAAATGAGGCAAAAATAGA+GGG + chr1_1:7344874-7344893 None:intergenic 30.0%
TGTAAATGAGGCAAAAATAG+AGG + chr1_1:7344875-7344894 None:intergenic 30.0%
AGGAACCAAAATTGTAAATG+AGG + chr1_1:7344887-7344906 None:intergenic 30.0%
ATTCGTGGATTTAAAAATGG+AGG + chr1_1:7344907-7344926 None:intergenic 30.0%
!!! CGGGTTGATTTTTTATGATT+TGG - chr1_1:7345026-7345045 Msa0004860:intron 30.0%
TGAAAACGAGTTATTAAGAG+AGG - chr1_1:7345086-7345105 Msa0004860:intron 30.0%
TCAACCTCAAAATGTATATG+GGG - chr1_1:7345270-7345289 Msa0004860:intron 30.0%
!! ATCATTTTAAAAATTGGGGG+GGG - chr1_1:7345304-7345323 Msa0004860:intron 30.0%
AATAAAATCCACTAGGACAT+TGG + chr1_1:7345511-7345530 None:intergenic 30.0%
CAAGGATATTAAGACAAGTT+TGG + chr1_1:7345582-7345601 None:intergenic 30.0%
ATATGATAAGGCATATTTGG+TGG - chr1_1:7345709-7345728 Msa0004860:intron 30.0%
!! TACTTTTGAGAGTTGTGATT+TGG + chr1_1:7346084-7346103 None:intergenic 30.0%
TAAAGCTTCTATTGTCAAGT+TGG - chr1_1:7346227-7346246 Msa0004860:three_prime_UTR 30.0%
!! AAGTTGGATTAAGTTGAAGA+TGG - chr1_1:7346243-7346262 Msa0004860:three_prime_UTR 30.0%
!!! TTGAGTCAGAGTTTTAAAAC+TGG - chr1_1:7346410-7346429 Msa0004860:exon 30.0%
!!! GAGTTTTAAACAAAGAGACA+AGG + chr1_1:7346670-7346689 None:intergenic 30.0%
ATCTGCCAATTTCAGAAAAT+AGG + chr1_1:7346717-7346736 None:intergenic 30.0%
!!! ATTTTCTGAAATTGGCAGAT+AGG - chr1_1:7346717-7346736 Msa0004860:CDS 30.0%
ATGATGTTAACCGGATAATT+TGG - chr1_1:7347119-7347138 Msa0004860:CDS 30.0%
!! CGGATAATTTGGTAATTTTG+AGG - chr1_1:7347130-7347149 Msa0004860:CDS 30.0%
! TAACATGGAACATTTTCAGT+CGG + chr1_1:7347186-7347205 None:intergenic 30.0%
ACAGAGGAATTTCACTGAAT+AGG + chr1_1:7343243-7343262 None:intergenic 35.0%
! AACAACAAGCTTTTGAACAG+AGG + chr1_1:7343259-7343278 None:intergenic 35.0%
AAGGGTAAACCTAATGAGAT+GGG + chr1_1:7343316-7343335 None:intergenic 35.0%
AAAGGGTAAACCTAATGAGA+TGG + chr1_1:7343317-7343336 None:intergenic 35.0%
! TTTACCCTTTTTCTTGTCGT+TGG - chr1_1:7343327-7343346 Msa0004860:three_prime_UTR 35.0%
AGTTCCAACGACAAGAAAAA+GGG + chr1_1:7343334-7343353 None:intergenic 35.0%
ATAAAGGCTGTTGATGTTGT+TGG + chr1_1:7343358-7343377 None:intergenic 35.0%
AACAACATCAACAGCCTTTA+TGG - chr1_1:7343357-7343376 Msa0004860:three_prime_UTR 35.0%
AGAGAAAGGAATTAGGGTTA+GGG + chr1_1:7343385-7343404 None:intergenic 35.0%
CTTGAAGTGAATGTTGACAT+CGG + chr1_1:7343441-7343460 None:intergenic 35.0%
AATGTTGTAGAAAGTTAGGG+AGG - chr1_1:7343744-7343763 Msa0004860:intron 35.0%
! TTGTTGTTGTTGGGGATTAT+TGG - chr1_1:7343779-7343798 Msa0004860:intron 35.0%
! TGTTGTTGTTGGGGATTATT+GGG - chr1_1:7343780-7343799 Msa0004860:intron 35.0%
! CTTTGGATTCTTGTTGTGAA+TGG - chr1_1:7343838-7343857 Msa0004860:intron 35.0%
AGAGGATTTGGATGATGAAT+TGG - chr1_1:7343894-7343913 Msa0004860:intron 35.0%
ATGGAGAACAAGATGAAGAT+GGG - chr1_1:7343959-7343978 Msa0004860:intron 35.0%
! TTGTCAAATAGCGACTTTTG+CGG - chr1_1:7344112-7344131 Msa0004860:intron 35.0%
!!! TTTTTTCCGCGATACACAAT+TGG - chr1_1:7344175-7344194 Msa0004860:intron 35.0%
GTATTTCCAATTGTGTATCG+CGG + chr1_1:7344184-7344203 None:intergenic 35.0%
TAAACGAAGCTAGACTGAAT+TGG - chr1_1:7344209-7344228 Msa0004860:intron 35.0%
AAACGAAGCTAGACTGAATT+GGG - chr1_1:7344210-7344229 Msa0004860:intron 35.0%
TAACTTCAAGGGTTTCATTG+TGG - chr1_1:7344330-7344349 Msa0004860:intron 35.0%
CAAAACATACCATCATAAGC+CGG + chr1_1:7344420-7344439 None:intergenic 35.0%
! TGCTATGTTCGTAGTTTTTG+TGG - chr1_1:7344616-7344635 Msa0004860:intron 35.0%
! GCTATGTTCGTAGTTTTTGT+GGG - chr1_1:7344617-7344636 Msa0004860:intron 35.0%
! CTATGTTCGTAGTTTTTGTG+GGG - chr1_1:7344618-7344637 Msa0004860:intron 35.0%
GGGAGCAAATTCATAGTTTA+TGG - chr1_1:7344638-7344657 Msa0004860:intron 35.0%
! TGAACATTTTCAAAACTGGC+AGG + chr1_1:7344935-7344954 None:intergenic 35.0%
TGACAAATGAGATGCTTATG+TGG + chr1_1:7345238-7345257 None:intergenic 35.0%
CAACCTCAAAATGTATATGG+GGG - chr1_1:7345271-7345290 Msa0004860:intron 35.0%
AACCTCAAAATGTATATGGG+GGG - chr1_1:7345272-7345291 Msa0004860:intron 35.0%
!! TCATTTTAAAAATTGGGGGG+GGG - chr1_1:7345305-7345324 Msa0004860:intron 35.0%
TGGATTGAGCGTTTAAGTAT+AGG + chr1_1:7345491-7345510 None:intergenic 35.0%
ATTAGTTAACCTACCACCTA+CGG - chr1_1:7345528-7345547 Msa0004860:intron 35.0%
ATTAAGACAAGTTTGGTCCA+TGG + chr1_1:7345575-7345594 None:intergenic 35.0%
! ATATTTGGTGGTATACTGGA+AGG - chr1_1:7345721-7345740 Msa0004860:intron 35.0%
AATGTGCTCATGTGTTTGAT+TGG + chr1_1:7345787-7345806 None:intergenic 35.0%
GATTACATACATGTACATCG+AGG - chr1_1:7345855-7345874 Msa0004860:intron 35.0%
!! GAGGCCTTATCTTTTTATCT+TGG - chr1_1:7345874-7345893 Msa0004860:intron 35.0%
ATTGAGATATGGGGATGTTA+CGG - chr1_1:7346120-7346139 Msa0004860:three_prime_UTR 35.0%
!! TGGATTAAGTTGAAGATGGA+AGG - chr1_1:7346247-7346266 Msa0004860:three_prime_UTR 35.0%
!!! TTGTTGACTTGAGTTTTCCA+TGG - chr1_1:7346320-7346339 Msa0004860:three_prime_UTR 35.0%
! ACTTGAGTTTTCCATGGATA+TGG - chr1_1:7346326-7346345 Msa0004860:three_prime_UTR 35.0%
!!! TCAGAGTTTTAAAACTGGAC+TGG - chr1_1:7346415-7346434 Msa0004860:CDS 35.0%
!!! ACCGTTTTAAAACTCAGAAC+TGG - chr1_1:7346438-7346457 Msa0004860:CDS 35.0%
!!! CCCAGTTCTGAGTTTTAAAA+CGG + chr1_1:7346442-7346461 None:intergenic 35.0%
!!! CCGTTTTAAAACTCAGAACT+GGG - chr1_1:7346439-7346458 Msa0004860:CDS 35.0%
!!! TTTTAAAACTCAGAACTGGG+AGG - chr1_1:7346442-7346461 Msa0004860:CDS 35.0%
! ACTGGACAGTTTTTCTAAAC+CGG - chr1_1:7346481-7346500 Msa0004860:CDS 35.0%
CATAAAGGAAAAGTTAAGCC+CGG + chr1_1:7346507-7346526 None:intergenic 35.0%
AGCTAAGTAGATCTAGACAA+TGG - chr1_1:7346879-7346898 Msa0004860:CDS 35.0%
ACATGATTTCACAAGCTCAA+TGG + chr1_1:7346927-7346946 None:intergenic 35.0%
GACAATGTTATGGCACTACT+TGG + chr1_1:7343181-7343200 None:intergenic 40.0%
ACATCACATCTGAAAAGACG+AGG + chr1_1:7343282-7343301 None:intergenic 40.0%
CAGTTCCAACGACAAGAAAA+AGG + chr1_1:7343335-7343354 None:intergenic 40.0%
TTAGGGTTAGGGTTCCATAA+AGG + chr1_1:7343374-7343393 None:intergenic 40.0%
CAGAGAAAGGAATTAGGGTT+AGG + chr1_1:7343386-7343405 None:intergenic 40.0%
CTGCAATAATGCTCCACTTA+AGG - chr1_1:7343558-7343577 Msa0004860:three_prime_UTR 40.0%
AATAATGCTCCACTTAAGGC+TGG - chr1_1:7343562-7343581 Msa0004860:three_prime_UTR 40.0%
ATTCCAAATCCAGCCTTAAG+TGG + chr1_1:7343574-7343593 None:intergenic 40.0%
ACTTAAGGCTGGATTTGGAA+TGG - chr1_1:7343573-7343592 Msa0004860:three_prime_UTR 40.0%
!!! TGGGGTTGATTCATTGGTTT+TGG - chr1_1:7343696-7343715 Msa0004860:intron 40.0%
! GTTGTTGTTGGGGATTATTG+GGG - chr1_1:7343781-7343800 Msa0004860:intron 40.0%
GATTATTGGGGTAGGGATTT+GGG - chr1_1:7343793-7343812 Msa0004860:intron 40.0%
ATTATTGGGGTAGGGATTTG+GGG - chr1_1:7343794-7343813 Msa0004860:intron 40.0%
!! ATGCTGATTTGTGGCTTCTT+TGG - chr1_1:7343821-7343840 Msa0004860:intron 40.0%
ATATTTGATGGGAGGAACAG+TGG - chr1_1:7343870-7343889 Msa0004860:intron 40.0%
GATGGAGAACAAGATGAAGA+TGG - chr1_1:7343958-7343977 Msa0004860:intron 40.0%
TTGTTATGGGATGCGCTATA+TGG - chr1_1:7344080-7344099 Msa0004860:intron 40.0%
AACGAAGCTAGACTGAATTG+GGG - chr1_1:7344211-7344230 Msa0004860:intron 40.0%
TTGTGTAGCGGTAACTTCAA+GGG - chr1_1:7344319-7344338 Msa0004860:intron 40.0%
GGTTTCATTGTGGTTATCTG+AGG - chr1_1:7344340-7344359 Msa0004860:intron 40.0%
GAAACTTCAGCAGTACAGAA+TGG + chr1_1:7344398-7344417 None:intergenic 40.0%
TTCTGTACTGCTGAAGTTTC+CGG - chr1_1:7344398-7344417 Msa0004860:intron 40.0%
!! TGAGTGGATTGGAGTTTACT+TGG - chr1_1:7344806-7344825 Msa0004860:intron 40.0%
ATGACACGACACTATCTAAG+TGG + chr1_1:7345204-7345223 None:intergenic 40.0%
ACCTCAAAATGTATATGGGG+GGG - chr1_1:7345273-7345292 Msa0004860:intron 40.0%
!! CATTTTAAAAATTGGGGGGG+GGG - chr1_1:7345306-7345325 Msa0004860:intron 40.0%
!! ATTTTAAAAATTGGGGGGGG+GGG - chr1_1:7345307-7345326 Msa0004860:intron 40.0%
TTAGTTAACCTACCACCTAC+GGG - chr1_1:7345529-7345548 Msa0004860:intron 40.0%
AATAGTTACCCCCTGAAGAT+AGG - chr1_1:7345652-7345671 Msa0004860:intron 40.0%
AGGGTCTATATTGTAGTCAG+AGG + chr1_1:7345682-7345701 None:intergenic 40.0%
! AGGCATATTTGGTGGTATAC+TGG - chr1_1:7345717-7345736 Msa0004860:intron 40.0%
! GGTATTGGATGTGTTCATTG+AGG - chr1_1:7345895-7345914 Msa0004860:intron 40.0%
TTGAGATATGGGGATGTTAC+GGG - chr1_1:7346121-7346140 Msa0004860:three_prime_UTR 40.0%
! TTACGGGGTCATTTAGAACA+CGG - chr1_1:7346137-7346156 Msa0004860:three_prime_UTR 40.0%
! TTTAGAACACGGTGTAGTGT+AGG - chr1_1:7346148-7346167 Msa0004860:three_prime_UTR 40.0%
! AGTTTTCCATGGATATGGTG+TGG - chr1_1:7346331-7346350 Msa0004860:three_prime_UTR 40.0%
! GTTTTCCATGGATATGGTGT+GGG - chr1_1:7346332-7346351 Msa0004860:three_prime_UTR 40.0%
ATACAACTCAAAGAACCGGT+CGG + chr1_1:7346361-7346380 None:intergenic 40.0%
GAGAAATTGAAGTCGCATGT+CGG - chr1_1:7346598-7346617 Msa0004860:CDS 40.0%
ACAATTCATATCGTGGTGCA+GGG + chr1_1:7346637-7346656 None:intergenic 40.0%
TACAATTCATATCGTGGTGC+AGG + chr1_1:7346638-7346657 None:intergenic 40.0%
! TGCATAATCTTCCATCGACT+AGG + chr1_1:7346768-7346787 None:intergenic 40.0%
AAGTAGACTCGAGCAAGAAT+CGG + chr1_1:7346819-7346838 None:intergenic 40.0%
CAATGCGACATGATGTTAAC+CGG - chr1_1:7347110-7347129 Msa0004860:intron 40.0%
AGCAACACCGATGAACATAA+TGG - chr1_1:7347156-7347175 Msa0004860:CDS 40.0%
CGGCAATCCATTATGTTCAT+CGG + chr1_1:7347166-7347185 None:intergenic 40.0%
TCCATGTTAGAAAAGCTCAC+CGG - chr1_1:7347197-7347216 Msa0004860:CDS 40.0%
GTGATCTCTTTGAGCTTTAC+CGG + chr1_1:7347219-7347238 None:intergenic 40.0%
!! TCACGTGCTTTAGAGGCATT+AGG + chr1_1:7343211-7343230 None:intergenic 45.0%
!! TGCCTCTAAAGCACGTGAAT+CGG - chr1_1:7343213-7343232 Msa0004860:three_prime_UTR 45.0%
CACGGCAGAGAAAGGAATTA+GGG + chr1_1:7343391-7343410 None:intergenic 45.0%
ACACGGCAGAGAAAGGAATT+AGG + chr1_1:7343392-7343411 None:intergenic 45.0%
TGCATTCGTAACCACAGACA+CGG + chr1_1:7343409-7343428 None:intergenic 45.0%
GTGAAGATTGTGACGGTTCA+TGG - chr1_1:7343625-7343644 Msa0004860:three_prime_UTR 45.0%
GATTGTGACGGTTCATGGTA+AGG - chr1_1:7343630-7343649 Msa0004860:three_prime_UTR 45.0%
!! TGCTGATTCGTCGTTGAAGT+GGG - chr1_1:7343660-7343679 Msa0004860:intron 45.0%
TTGTTGGGGATTATTGGGGT+AGG - chr1_1:7343785-7343804 Msa0004860:intron 45.0%
TGTTGGGGATTATTGGGGTA+GGG - chr1_1:7343786-7343805 Msa0004860:intron 45.0%
GGATTATTGGGGTAGGGATT+TGG - chr1_1:7343792-7343811 Msa0004860:intron 45.0%
AGGAACAGTGGAAGAGGATT+TGG - chr1_1:7343882-7343901 Msa0004860:intron 45.0%
ACGAAGCTAGACTGAATTGG+GGG - chr1_1:7344212-7344231 Msa0004860:intron 45.0%
GTTGTGTAGCGGTAACTTCA+AGG - chr1_1:7344318-7344337 Msa0004860:intron 45.0%
CTGAAGTTTCCGGCTTATGA+TGG - chr1_1:7344408-7344427 Msa0004860:intron 45.0%
AACTGGCAGGATCAAATTCG+TGG + chr1_1:7344922-7344941 None:intergenic 45.0%
! TCCCCCCCATATACATTTTG+AGG + chr1_1:7345277-7345296 None:intergenic 45.0%
!! TTTTAAAAATTGGGGGGGGG+GGG - chr1_1:7345308-7345327 Msa0004860:intron 45.0%
TAGTTAACCTACCACCTACG+GGG - chr1_1:7345530-7345549 Msa0004860:intron 45.0%
AGAGGACTTCCTATCTTCAG+GGG + chr1_1:7345664-7345683 None:intergenic 45.0%
CAGAGGACTTCCTATCTTCA+GGG + chr1_1:7345665-7345684 None:intergenic 45.0%
TCAGAGGACTTCCTATCTTC+AGG + chr1_1:7345666-7345685 None:intergenic 45.0%
TGAGATATGGGGATGTTACG+GGG - chr1_1:7346122-7346141 Msa0004860:three_prime_UTR 45.0%
! GACAGTTTTTCTAAACCGGC+CGG - chr1_1:7346485-7346504 Msa0004860:CDS 45.0%
! ACAGTTTTTCTAAACCGGCC+GGG - chr1_1:7346486-7346505 Msa0004860:CDS 45.0%
CAATTCATATCGTGGTGCAG+GGG + chr1_1:7346636-7346655 None:intergenic 45.0%
ATTGGCAGATAGGCGATTAG+AGG - chr1_1:7346727-7346746 Msa0004860:CDS 45.0%
TTGGCAGATAGGCGATTAGA+GGG - chr1_1:7346728-7346747 Msa0004860:CDS 45.0%
! GTGGTTTTCATCCTAGTCGA+TGG - chr1_1:7346754-7346773 Msa0004860:CDS 45.0%
! AGTGCTATTACAGCTGAACG+AGG - chr1_1:7346788-7346807 Msa0004860:CDS 45.0%
! GTGCTATTACAGCTGAACGA+GGG - chr1_1:7346789-7346808 Msa0004860:CDS 45.0%
GCTCAATGGCGCTATAAACA+GGG + chr1_1:7346913-7346932 None:intergenic 45.0%
AGCTCAATGGCGCTATAAAC+AGG + chr1_1:7346914-7346933 None:intergenic 45.0%
CGGTTAACATCATGTCGCAT+TGG + chr1_1:7347112-7347131 None:intergenic 45.0%
! ACCGGTGAGCTTTTCTAACA+TGG + chr1_1:7347201-7347220 None:intergenic 45.0%
!! GCCTCTAAAGCACGTGAATC+GGG - chr1_1:7343214-7343233 Msa0004860:three_prime_UTR 50.0%
TCCCGATTCACGTGCTTTAG+AGG + chr1_1:7343218-7343237 None:intergenic 50.0%
GCTCCACTTAAGGCTGGATT+TGG - chr1_1:7343568-7343587 Msa0004860:three_prime_UTR 50.0%
! GGCTGGATTTGGAATGGCTT+CGG - chr1_1:7343579-7343598 Msa0004860:three_prime_UTR 50.0%
! GCTGGATTTGGAATGGCTTC+GGG - chr1_1:7343580-7343599 Msa0004860:three_prime_UTR 50.0%
! CTGGATTTGGAATGGCTTCG+GGG - chr1_1:7343581-7343600 Msa0004860:three_prime_UTR 50.0%
GACGGTTCATGGTAAGGTGA+AGG - chr1_1:7343636-7343655 Msa0004860:three_prime_UTR 50.0%
!! CTGCTGATTCGTCGTTGAAG+TGG - chr1_1:7343659-7343678 Msa0004860:intron 50.0%
TTGAAGTGGGAGATGAGGAG+TGG - chr1_1:7343673-7343692 Msa0004860:intron 50.0%
! GAGTGGTGGGGTTGATTCAT+TGG - chr1_1:7343690-7343709 Msa0004860:intron 50.0%
!! TGGGGAGGAATGCTGATTTG+TGG - chr1_1:7343812-7343831 Msa0004860:intron 50.0%
CGAAGCTAGACTGAATTGGG+GGG - chr1_1:7344213-7344232 Msa0004860:intron 50.0%
GAAGCTAGACTGAATTGGGG+GGG - chr1_1:7344214-7344233 Msa0004860:intron 50.0%
GTGTCGTGTCATCAACTGAG+TGG - chr1_1:7345212-7345231 Msa0004860:intron 50.0%
TTTAAAAATTGGGGGGGGGG+GGG - chr1_1:7345309-7345328 Msa0004860:intron 50.0%
CGCTCAATCCAATGTCCTAG+TGG - chr1_1:7345500-7345519 Msa0004860:intron 50.0%
GAGGATCTGGGTTCAAACCA+TGG - chr1_1:7345555-7345574 Msa0004860:intron 50.0%
GAGGACTTCCTATCTTCAGG+GGG + chr1_1:7345663-7345682 None:intergenic 50.0%
GGTGGTATACTGGAAGGTTG+TGG - chr1_1:7345727-7345746 Msa0004860:intron 50.0%
! TGGGAGGTGACTGGTTATAG+TGG - chr1_1:7346458-7346477 Msa0004860:CDS 50.0%
!! GGTGACTGGTTATAGTGGAC+TGG - chr1_1:7346463-7346482 Msa0004860:CDS 50.0%
AAGGAAAAGTTAAGCCCGGC+CGG + chr1_1:7346503-7346522 None:intergenic 50.0%
! ATAGGCGATTAGAGGGCATG+TGG - chr1_1:7346735-7346754 Msa0004860:CDS 50.0%
TCCTTTCTCTGCCGTGTCTG+TGG - chr1_1:7343395-7343414 Msa0004860:three_prime_UTR 55.0%
ACCACAGACACGGCAGAGAA+AGG + chr1_1:7343399-7343418 None:intergenic 55.0%
TTGGAATGGCTTCGGGGTTG+CGG - chr1_1:7343587-7343606 Msa0004860:three_prime_UTR 55.0%
CGTCGTTGAAGTGGGAGATG+AGG - chr1_1:7343668-7343687 Msa0004860:intron 55.0%
AAGTGGGAGATGAGGAGTGG+TGG - chr1_1:7343676-7343695 Msa0004860:intron 55.0%
AGTGGGAGATGAGGAGTGGT+GGG - chr1_1:7343677-7343696 Msa0004860:intron 55.0%
ATTGGGGTAGGGATTTGGGG+AGG - chr1_1:7343797-7343816 Msa0004860:intron 55.0%
GATGGGAGGAACAGTGGAAG+AGG - chr1_1:7343876-7343895 Msa0004860:intron 55.0%
! GAATTGGGGGGGTGCAAGAA+TGG - chr1_1:7344225-7344244 Msa0004860:intron 55.0%
TTAAAAATTGGGGGGGGGGG+GGG - chr1_1:7345310-7345329 Msa0004860:intron 55.0%
ACCTACGGGGTAGAGGATCT+GGG - chr1_1:7345543-7345562 Msa0004860:intron 55.0%
ACACACGAGGTTGCAACCAC+AGG + chr1_1:7346293-7346312 None:intergenic 55.0%
GGTTGCAACCTCGTGTGTGT+AGG - chr1_1:7346295-7346314 Msa0004860:three_prime_UTR 55.0%
CAACAACGCCTACACACACG+AGG + chr1_1:7346306-7346325 None:intergenic 55.0%
GGTTGCCCACACCATATCCA+TGG + chr1_1:7346340-7346359 None:intergenic 55.0%
ATATGGTGTGGGCAACCGAC+CGG - chr1_1:7346343-7346362 Msa0004860:three_prime_UTR 55.0%
ACTCAGAACTGGGAGGTGAC+TGG - chr1_1:7346449-7346468 Msa0004860:CDS 55.0%
GTGGGAGATGAGGAGTGGTG+GGG - chr1_1:7343678-7343697 Msa0004860:intron 60.0%
TAAAAATTGGGGGGGGGGGG+GGG - chr1_1:7345311-7345330 Msa0004860:intron 60.0%
ACCTACCACCTACGGGGTAG+AGG - chr1_1:7345536-7345555 Msa0004860:intron 60.0%
TCCTCTACCCCGTAGGTGGT+AGG + chr1_1:7345540-7345559 None:intergenic 60.0%
CAGATCCTCTACCCCGTAGG+TGG + chr1_1:7345544-7345563 None:intergenic 60.0%
CACCTACGGGGTAGAGGATC+TGG - chr1_1:7345542-7345561 Msa0004860:intron 60.0%
ACCCAGATCCTCTACCCCGT+AGG + chr1_1:7345547-7345566 None:intergenic 60.0%
AAAAATTGGGGGGGGGGGGG+GGG - chr1_1:7345312-7345331 Msa0004860:intron 65.0%
ATGGCTTCGGGGTTGCGGCG+AGG - chr1_1:7343592-7343611 Msa0004860:three_prime_UTR 70.0%
AAAATTGGGGGGGGGGGGGG+GGG - chr1_1:7345313-7345332 Msa0004860:intron 70.0%
GCTTCGGGGTTGCGGCGAGG+TGG - chr1_1:7343595-7343614 Msa0004860:three_prime_UTR 75.0%
AAATTGGGGGGGGGGGGGGG+GGG - chr1_1:7345314-7345333 Msa0004860:intron 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG - chr1_1:7345315-7345334 Msa0004860:intron 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - chr1_1:7345316-7345335 Msa0004860:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr1_1:7345317-7345336 Msa0004860:intron 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7343172 7347239 7343172 ID=Msa0004860;Name=Msa0004860
chr1_1 mRNA 7343172 7347239 7343172 ID=Msa0004860-mRNA-1;Parent=Msa0004860;Name=Msa0004860-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.25|0.2|1|0.75|0.6|5|952|253
chr1_1 exon 7343172 7343676 7343172 ID=Msa0004860-mRNA-1:exon:2592;Parent=Msa0004860-mRNA-1
chr1_1 exon 7345968 7346657 7345968 ID=Msa0004860-mRNA-1:exon:2591;Parent=Msa0004860-mRNA-1
chr1_1 exon 7346679 7346853 7346679 ID=Msa0004860-mRNA-1:exon:2590;Parent=Msa0004860-mRNA-1
chr1_1 exon 7346865 7347085 7346865 ID=Msa0004860-mRNA-1:exon:2589;Parent=Msa0004860-mRNA-1
chr1_1 exon 7347117 7347239 7347117 ID=Msa0004860-mRNA-1:exon:2588;Parent=Msa0004860-mRNA-1
chr1_1 CDS 7347117 7347239 7347117 ID=Msa0004860-mRNA-1:cds;Parent=Msa0004860-mRNA-1
chr1_1 CDS 7346865 7347085 7346865 ID=Msa0004860-mRNA-1:cds;Parent=Msa0004860-mRNA-1
chr1_1 CDS 7346679 7346853 7346679 ID=Msa0004860-mRNA-1:cds;Parent=Msa0004860-mRNA-1
chr1_1 CDS 7346415 7346657 7346415 ID=Msa0004860-mRNA-1:cds;Parent=Msa0004860-mRNA-1
chr1_1 three_prime_UTR 7345968 7346414 7345968 ID=Msa0004860-mRNA-1:three_prime_utr;Parent=Msa0004860-mRNA-1
chr1_1 three_prime_UTR 7343172 7343676 7343172 ID=Msa0004860-mRNA-1:three_prime_utr;Parent=Msa0004860-mRNA-1
Gene Sequence

>Msa0004860

ATGTTACCAAGTAGTGCCATAACATTGTCTTTTATACCTAATGCCTCTAAAGCACGTGAATCGGGATACCTATTCAGTGAAATTCCTCTGTTCAAAAGCTTGTTGTTCCTCGTCTTTTCAGATGTTTACCCTTTTTCTTGTCGTTGGAACTGCCAACAACATCAACAGCCTTTATGGAACCCTAACCCTAATTCCTTTCTCTGCCGTGTCTGTGGTTACGAATGCAAATCACTTACCGATGTCAACATTCACTTCAAGCGAGTTCATGAGTATCAGACGCTGAATCGATTGAAATCTATTAAATTGAAACGTTCTAAGGTTAATTTCATTCGAAGGAATCATAGCTGCAATAATGCTCCACTTAAGGCTGGATTTGGAATGGCTTCGGGGTTGCGGCGAGGTGGTGTTTTTGTGAAGATTGTGACGGTTCATGGTAAGGTGAAGGCTGCTGATTCGTCGTTGAAGTGGGAGATGAGGAGTGGTGGGGTTGATTCATTGGTTTTGGTTTCGGATGATTCCAAAGTTAGGGAGGTGAAAGTAGAAATTGTTGTTGTTGGGGATTATTGGGGTAGGGATTTGGGGAGGAATGCTGATTTGTGGCTTCTTTGGATTCTTGTTGTGAATGGAAATGTTGAATATTTGATGGGAGGAACAGTGGAAGAGGATTTGGATGATGAATTGGAAGAAGAATATGATGATTATGATGATGATGGGTATATAATAGATGGAGAACAAGATGAAGATGGGTTTTATGTTTATTGA

Protein sequence

>Msa0004860

MLPSSAITLSFIPNASKARESGYLFSEIPLFKSLLFLVFSDVYPFSCRWNCQQHQQPLWNPNPNSFLCRVCGYECKSLTDVNIHFKRVHEYQTLNRLKSIKLKRSKVNFIRRNHSCNNAPLKAGFGMASGLRRGGVFVKIVTVHGKVKAADSSLKWEMRSGGVDSLVLVSDDSKVREVKVEIVVVGDYWGRDLGRNADLWLLWILVVNGNVEYLMGGTVEEDLDDELEEEYDDYDDDGYIIDGEQDEDGFYVY*