AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051770 MtrunA17_Chr1g0153141 82.558 172 13 4 65 219 118 289 9.34e-88 263
Msa0051770 MtrunA17_Chr1g0151261 40.278 216 102 9 60 252 126 337 1.56e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051770 AT5G52010.1 37.870 169 81 7 64 211 150 315 8.59e-23 96.3
Msa0051770 AT4G12240.1 29.592 196 110 6 63 232 114 307 3.02e-11 63.2

Find 120 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTGGGGTAGGGATTT+GGG 0.147483 1_2:-5891218 Msa0051770:CDS
AACAACATCAACAGCCTTTA+TGG 0.151097 1_2:-5891654 Msa0051770:CDS
GGATTATTGGGGTAGGGATT+TGG 0.178313 1_2:-5891219 Msa0051770:CDS
TTGTTGTTGTTGGGGATTAT+TGG 0.205625 1_2:-5891232 Msa0051770:CDS
TTCTGTACTGCTGAAGTTTC+CGG 0.209430 1_2:-5890613 Msa0051770:three_prime_UTR
ATGATGTTAACCGGATAATT+TGG 0.215343 1_2:-5887891 Msa0051770:three_prime_UTR
ATGCTGATTTGTGGCTTCTT+TGG 0.222848 1_2:-5891190 Msa0051770:CDS
AGAAAATGTTGTAGAAAGTT+AGG 0.240520 1_2:-5891271 Msa0051770:intron
TGGGGTTGATTCATTGGTTT+TGG 0.248478 1_2:-5891315 Msa0051770:CDS
GCTGGATTTGGAATGGCTTC+GGG 0.261557 1_2:-5891431 Msa0051770:CDS
TGTTGTTGTTGGGGATTATT+GGG 0.261710 1_2:-5891231 Msa0051770:CDS
TATTAAATTGAAACGTTCTA+AGG 0.265804 1_2:-5891512 Msa0051770:CDS
ACACGGCAGAGAAAGGAATT+AGG 0.272033 1_2:+5891622 None:intergenic
CAGTTCCAACGACAAGAAAA+AGG 0.278063 1_2:+5891679 None:intergenic
GAGTGGTGGGGTTGATTCAT+TGG 0.283377 1_2:-5891321 Msa0051770:CDS
CGAAGAAATCACTATTGTTA+TGG 0.284732 1_2:-5890945 Msa0051770:three_prime_UTR
GCTCCACTTAAGGCTGGATT+TGG 0.286717 1_2:-5891443 Msa0051770:CDS
AGGAACAGTGGAAGAGGATT+TGG 0.291982 1_2:-5891129 Msa0051770:CDS
GGCTGGATTTGGAATGGCTT+CGG 0.304498 1_2:-5891432 Msa0051770:CDS
AGCTCAATGGCGCTATAAAC+AGG 0.307628 1_2:+5888099 None:intergenic
GTGATCTCTTTGAGCTTTAC+CGG 0.311285 1_2:+5887794 None:intergenic
ATTGAAGATTATTATTTCAT+AGG 0.322017 1_2:-5887999 Msa0051770:three_prime_UTR
AAACGAAGCTAGACTGAATT+GGG 0.325669 1_2:-5890801 Msa0051770:three_prime_UTR
TAAACGAAGCTAGACTGAAT+TGG 0.332936 1_2:-5890802 Msa0051770:three_prime_UTR
GAAGAAATCACTATTGTTAT+GGG 0.334101 1_2:-5890944 Msa0051770:three_prime_UTR
CTTTGGATTCTTGTTGTGAA+TGG 0.342263 1_2:-5891173 Msa0051770:CDS
CAGAGAAAGGAATTAGGGTT+AGG 0.348098 1_2:+5891628 None:intergenic
ATTATTGGGGTAGGGATTTG+GGG 0.351048 1_2:-5891217 Msa0051770:CDS
AGAGGATTTGGATGATGAAT+TGG 0.363809 1_2:-5891117 Msa0051770:CDS
TCCCGATTCACGTGCTTTAG+AGG 0.367323 1_2:+5891796 None:intergenic
AAAGTAGAAATTGTTGTTGT+TGG 0.377692 1_2:-5891242 Msa0051770:CDS
CTCAAAATTACCAAATTATC+CGG 0.400802 1_2:+5887881 None:intergenic
TTGGAATGGCTTCGGGGTTG+CGG 0.403725 1_2:-5891424 Msa0051770:CDS
CTGCAATAATGCTCCACTTA+AGG 0.407663 1_2:-5891453 Msa0051770:CDS
TGCCTCTAAAGCACGTGAAT+CGG 0.412355 1_2:-5891798 Msa0051770:CDS
ACAGAGGAATTTCACTGAAT+AGG 0.418923 1_2:+5891771 None:intergenic
TTGTTATGGGATGCGCTATA+TGG 0.419334 1_2:-5890931 Msa0051770:three_prime_UTR
GTGAAGATTGTGACGGTTCA+TGG 0.424458 1_2:-5891386 Msa0051770:CDS
AAGTAGAAATTGTTGTTGTT+GGG 0.425403 1_2:-5891241 Msa0051770:CDS
TCACGTGCTTTAGAGGCATT+AGG 0.430867 1_2:+5891803 None:intergenic
GCCTCTAAAGCACGTGAATC+GGG 0.432430 1_2:-5891797 Msa0051770:CDS
CACGGCAGAGAAAGGAATTA+GGG 0.442544 1_2:+5891623 None:intergenic
ATTTCATTCGAAGGAATCAT+AGG 0.443246 1_2:-5891486 Msa0051770:intron
GAAAATGTTGTAGAAAGTTA+GGG 0.445508 1_2:-5891270 Msa0051770:intron
TTGTTGGGGATTATTGGGGT+AGG 0.453010 1_2:-5891226 Msa0051770:CDS
ATTGGCAGATAGGCGATTAG+AGG 0.456696 1_2:-5888283 Msa0051770:intron
TGGGGAGGAATGCTGATTTG+TGG 0.458714 1_2:-5891199 Msa0051770:CDS
GATGGGAGGAACAGTGGAAG+AGG 0.460550 1_2:-5891135 Msa0051770:CDS
AGAATGGATTATCGAAATTG+AGG 0.466477 1_2:-5890770 Msa0051770:three_prime_UTR
CAATGCGACATGATGTTAAC+CGG 0.468038 1_2:-5887900 Msa0051770:three_prime_UTR
GACAATGTTATGGCACTACT+TGG 0.468181 1_2:+5891833 None:intergenic
GATGATGGGTATATAATAGA+TGG 0.469192 1_2:-5891071 Msa0051770:CDS
TTAGGGTTAGGGTTCCATAA+AGG 0.469727 1_2:+5891640 None:intergenic
CTGAAGTTTCCGGCTTATGA+TGG 0.470810 1_2:-5890603 Msa0051770:three_prime_UTR
GTTGTGTAGCGGTAACTTCA+AGG 0.475420 1_2:-5890693 Msa0051770:three_prime_UTR
TGTTGGGGATTATTGGGGTA+GGG 0.476786 1_2:-5891225 Msa0051770:CDS
TGGAAATGTTGAATATTTGA+TGG 0.476818 1_2:-5891153 Msa0051770:CDS
GATGGAGAACAAGATGAAGA+TGG 0.483387 1_2:-5891053 Msa0051770:CDS
AGTGGGAGATGAGGAGTGGT+GGG 0.484755 1_2:-5891334 Msa0051770:CDS
ATAAAGGCTGTTGATGTTGT+TGG 0.486970 1_2:+5891656 None:intergenic
AGTTGAGTTATGTTGAATTG+AGG 0.487258 1_2:-5890744 Msa0051770:three_prime_UTR
ATTCCAAATCCAGCCTTAAG+TGG 0.497244 1_2:+5891440 None:intergenic
AAGTGGGAGATGAGGAGTGG+TGG 0.497507 1_2:-5891335 Msa0051770:CDS
AGCAACACCGATGAACATAA+TGG 0.502343 1_2:-5887854 Msa0051770:three_prime_UTR
AGAGAAAGGAATTAGGGTTA+GGG 0.502994 1_2:+5891629 None:intergenic
AGGTATAAAAGACAATGTTA+TGG 0.509953 1_2:+5891823 None:intergenic
CTAAGGTTAATTTCATTCGA+AGG 0.511091 1_2:-5891495 Msa0051770:CDS
TGCTGATTCGTCGTTGAAGT+GGG 0.511671 1_2:-5891351 Msa0051770:CDS
TATGATGATTATGATGATGA+TGG 0.514858 1_2:-5891086 Msa0051770:CDS
ACCACAGACACGGCAGAGAA+AGG 0.521644 1_2:+5891615 None:intergenic
TCCTTTCTCTGCCGTGTCTG+TGG 0.525164 1_2:-5891616 Msa0051770:CDS
ACTTAAGGCTGGATTTGGAA+TGG 0.529534 1_2:-5891438 Msa0051770:CDS
ATGGAGAACAAGATGAAGAT+GGG 0.532185 1_2:-5891052 Msa0051770:CDS
GTTGTTGTTGGGGATTATTG+GGG 0.532767 1_2:-5891230 Msa0051770:CDS
AAGTAGACTCGAGCAAGAAT+CGG 0.534729 1_2:+5888194 None:intergenic
ATTGGGGTAGGGATTTGGGG+AGG 0.535150 1_2:-5891214 Msa0051770:CDS
CTGCTGATTCGTCGTTGAAG+TGG 0.542933 1_2:-5891352 Msa0051770:CDS
GCTTCGGGGTTGCGGCGAGG+TGG 0.549029 1_2:-5891416 Msa0051770:CDS
TTGTGTAGCGGTAACTTCAA+GGG 0.551607 1_2:-5890692 Msa0051770:three_prime_UTR
GGTTTCATTGTGGTTATCTG+AGG 0.554704 1_2:-5890671 Msa0051770:three_prime_UTR
CGGCAATCCATTATGTTCAT+CGG 0.555524 1_2:+5887847 None:intergenic
ACATGATTTCACAAGCTCAA+TGG 0.556304 1_2:+5888086 None:intergenic
CGTCGTTGAAGTGGGAGATG+AGG 0.561588 1_2:-5891343 Msa0051770:CDS
CTGGATTTGGAATGGCTTCG+GGG 0.563030 1_2:-5891430 Msa0051770:CDS
AGTAGAAATTGTTGTTGTTG+GGG 0.564552 1_2:-5891240 Msa0051770:CDS
GGAAATGTTGAATATTTGAT+GGG 0.569673 1_2:-5891152 Msa0051770:CDS
GATTGTGACGGTTCATGGTA+AGG 0.571325 1_2:-5891381 Msa0051770:CDS
AATAATGCTCCACTTAAGGC+TGG 0.571589 1_2:-5891449 Msa0051770:CDS
ATGGCACTACTTGGTAACAT+AGG 0.579546 1_2:+5891842 None:intergenic
ATATTTGATGGGAGGAACAG+TGG 0.582987 1_2:-5891141 Msa0051770:CDS
GTCTACTTAATATAGTATGT+AGG 0.589902 1_2:-5888179 Msa0051770:three_prime_UTR
ATGGCTTCGGGGTTGCGGCG+AGG 0.597398 1_2:-5891419 Msa0051770:CDS
TTGGCAGATAGGCGATTAGA+GGG 0.601372 1_2:-5888282 Msa0051770:intron
CAAAACATACCATCATAAGC+CGG 0.603774 1_2:+5890594 None:intergenic
GAAACTTCAGCAGTACAGAA+TGG 0.604469 1_2:+5890616 None:intergenic
CGGTTAACATCATGTCGCAT+TGG 0.606219 1_2:+5887901 None:intergenic
ATGATGATTATGATGATGAT+GGG 0.607293 1_2:-5891085 Msa0051770:CDS
TTGATTATAATGTTGTGTAG+CGG 0.608015 1_2:-5890704 Msa0051770:three_prime_UTR
GCTCAATGGCGCTATAAACA+GGG 0.612239 1_2:+5888100 None:intergenic
TAACTTCAAGGGTTTCATTG+TGG 0.617421 1_2:-5890681 Msa0051770:three_prime_UTR
AATGTTGTAGAAAGTTAGGG+AGG 0.621987 1_2:-5891267 Msa0051770:intron
AACGAAGCTAGACTGAATTG+GGG 0.626874 1_2:-5890800 Msa0051770:three_prime_UTR
AGCTAAGTAGATCTAGACAA+TGG 0.627099 1_2:-5888131 Msa0051770:three_prime_UTR
TGCATTCGTAACCACAGACA+CGG 0.628222 1_2:+5891605 None:intergenic
AATGTTGAATATTTGATGGG+AGG 0.632949 1_2:-5891149 Msa0051770:CDS
GTATTTCCAATTGTGTATCG+CGG 0.639993 1_2:+5890830 None:intergenic
TAAAGCTCAAAGAGATCACA+AGG 0.640822 1_2:-5887790 None:intergenic
GACGGTTCATGGTAAGGTGA+AGG 0.641007 1_2:-5891375 Msa0051770:CDS
GTGGGAGATGAGGAGTGGTG+GGG 0.643449 1_2:-5891333 Msa0051770:CDS
GAAGCTAGACTGAATTGGGG+GGG 0.650361 1_2:-5890797 Msa0051770:three_prime_UTR
ATAGGCGATTAGAGGGCATG+TGG 0.657982 1_2:-5888275 Msa0051770:three_prime_UTR
TGCATAATCTTCCATCGACT+AGG 0.659164 1_2:+5888245 None:intergenic
CGAAGCTAGACTGAATTGGG+GGG 0.663694 1_2:-5890798 Msa0051770:three_prime_UTR
ACGAAGCTAGACTGAATTGG+GGG 0.667187 1_2:-5890799 Msa0051770:three_prime_UTR
TTGAAGTGGGAGATGAGGAG+TGG 0.667462 1_2:-5891338 Msa0051770:CDS
CTTGAAGTGAATGTTGACAT+CGG 0.681461 1_2:+5891573 None:intergenic
TCCATGTTAGAAAAGCTCAC+CGG 0.683304 1_2:-5887813 Msa0051770:three_prime_UTR
AGTGCTATTACAGCTGAACG+AGG 0.699281 1_2:-5888222 Msa0051770:three_prime_UTR
ACATCACATCTGAAAAGACG+AGG 0.703168 1_2:+5891732 None:intergenic
GTGCTATTACAGCTGAACGA+GGG 0.725386 1_2:-5888221 Msa0051770:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATTTTTTTTTTTGAAA+CGG + chr1_2:5890261-5890280 None:intergenic 10.0%
!! TTTGAAAAAAAAAAATTAGA+AGG - chr1_2:5891170-5891189 Msa0051770:CDS 10.0%
!! ATCTATTTATCAATTAATCA+TGG + chr1_2:5889148-5889167 None:intergenic 15.0%
!! TCAATAGTAATAATATTGTT+AGG - chr1_2:5889319-5889338 Msa0051770:intron 15.0%
!!! ATTTTTCTATATATGCATTT+CGG - chr1_2:5889578-5889597 Msa0051770:intron 15.0%
!!! TCTGAATCATTTTAAAAATT+GGG - chr1_2:5889920-5889939 Msa0051770:intron 15.0%
!!! TTAATGAATTTTGATTCATT+TGG - chr1_2:5891577-5891596 Msa0051770:CDS 15.0%
!! ATTGAAGATTATTATTTCAT+AGG - chr1_2:5891633-5891652 Msa0051770:CDS 15.0%
!! TATTAAATTGAAACGTTCTA+AGG - chr1_2:5888120-5888139 Msa0051770:three_prime_UTR 20.0%
!!! TTATATGTCAATTTTGTTGT+TGG - chr1_2:5889203-5889222 Msa0051770:intron 20.0%
!! ATATGATTCTTTAGTTATGA+AGG - chr1_2:5889293-5889312 Msa0051770:intron 20.0%
!!! TTTTTCTATATATGCATTTC+GGG - chr1_2:5889579-5889598 Msa0051770:intron 20.0%
!!! TTTTCTTCATATATGCTTTT+CGG - chr1_2:5889627-5889646 Msa0051770:intron 20.0%
!!! GTCTGAATCATTTTAAAAAT+TGG - chr1_2:5889919-5889938 Msa0051770:intron 20.0%
!!! CTGAATCATTTTAAAAATTG+GGG - chr1_2:5889921-5889940 Msa0051770:intron 20.0%
!!! TGAATCATTTTAAAAATTGG+GGG - chr1_2:5889922-5889941 Msa0051770:intron 20.0%
!!! TAAATTGTAGCTTTAGAAAT+AGG - chr1_2:5889961-5889980 Msa0051770:intron 20.0%
!!! AAATTGTAGCTTTAGAAATA+GGG - chr1_2:5889962-5889981 Msa0051770:intron 20.0%
!!! TATAGGCTTAAATGTTATTT+TGG + chr1_2:5890021-5890040 None:intergenic 20.0%
!! AATATATGATAAGGCATATT+TGG - chr1_2:5890328-5890347 Msa0051770:intron 20.0%
!! AATACCAAGATAAAAAGATA+AGG + chr1_2:5890503-5890522 None:intergenic 20.0%
!!! TTATCTTTTTATCTTGGTAT+TGG - chr1_2:5890502-5890521 Msa0051770:intron 20.0%
!! TAATTGTAAATGAAAGTTGT+GGG + chr1_2:5890624-5890643 None:intergenic 20.0%
!!! ATCTCAATGTCATTTTATAT+GGG + chr1_2:5890730-5890749 None:intergenic 20.0%
!!! TATCTCAATGTCATTTTATA+TGG + chr1_2:5890731-5890750 None:intergenic 20.0%
!! TATAAAATGACATTGAGATA+TGG - chr1_2:5890731-5890750 Msa0051770:three_prime_UTR 20.0%
!! ATAAAATGACATTGAGATAT+GGG - chr1_2:5890732-5890751 Msa0051770:three_prime_UTR 20.0%
!! TATAAAGCAGTTAATCATAA+AGG + chr1_2:5891145-5891164 None:intergenic 20.0%
!!! ATTATCCTATTTTCTGAAAT+TGG - chr1_2:5891331-5891350 Msa0051770:CDS 20.0%
! AGGTATAAAAGACAATGTTA+TGG + chr1_2:5887812-5887831 None:intergenic 25.0%
! AGAAAATGTTGTAGAAAGTT+AGG - chr1_2:5888361-5888380 Msa0051770:intron 25.0%
! GAAAATGTTGTAGAAAGTTA+GGG - chr1_2:5888362-5888381 Msa0051770:intron 25.0%
!! AAAGTAGAAATTGTTGTTGT+TGG - chr1_2:5888390-5888409 Msa0051770:intron 25.0%
!! AAGTAGAAATTGTTGTTGTT+GGG - chr1_2:5888391-5888410 Msa0051770:intron 25.0%
! TGGAAATGTTGAATATTTGA+TGG - chr1_2:5888479-5888498 Msa0051770:intron 25.0%
! GGAAATGTTGAATATTTGAT+GGG - chr1_2:5888480-5888499 Msa0051770:intron 25.0%
!! TATGATGATTATGATGATGA+TGG - chr1_2:5888546-5888565 Msa0051770:intron 25.0%
!! ATGATGATTATGATGATGAT+GGG - chr1_2:5888547-5888566 Msa0051770:intron 25.0%
!! TTTTCAGTATTGTCAAATAG+CGG - chr1_2:5888629-5888648 Msa0051770:intron 25.0%
! GAAGAAATCACTATTGTTAT+GGG - chr1_2:5888688-5888707 Msa0051770:intron 25.0%
! TTGATTATAATGTTGTGTAG+CGG - chr1_2:5888928-5888947 Msa0051770:intron 25.0%
! AGAAGAAAAACAAAACGAAA+AGG + chr1_2:5889085-5889104 None:intergenic 25.0%
! AAATAGATTGTAGTTTGAGA+TGG - chr1_2:5889160-5889179 Msa0051770:intron 25.0%
!! TTTTGCCTCATTTACAATTT+TGG - chr1_2:5889500-5889519 Msa0051770:intron 25.0%
! CAAATTCGTGGATTTAAAAA+TGG + chr1_2:5889531-5889550 None:intergenic 25.0%
!! ATGTTGAACATTTTCAAAAC+TGG + chr1_2:5889560-5889579 None:intergenic 25.0%
!! TTTCTTCATATATGCTTTTC+GGG - chr1_2:5889628-5889647 Msa0051770:intron 25.0%
! GATGTAAAATATTGTCTATG+TGG + chr1_2:5889735-5889754 None:intergenic 25.0%
! ATTCAACCTCAAAATGTATA+TGG - chr1_2:5889889-5889908 Msa0051770:intron 25.0%
! TTCAACCTCAAAATGTATAT+GGG - chr1_2:5889890-5889909 Msa0051770:intron 25.0%
!!! GAATCATTTTAAAAATTGGG+GGG - chr1_2:5889923-5889942 Msa0051770:intron 25.0%
!!! AATCATTTTAAAAATTGGGG+GGG - chr1_2:5889924-5889943 Msa0051770:intron 25.0%
! TAGTGAATGAGACAAAATAA+AGG - chr1_2:5889993-5890012 Msa0051770:intron 25.0%
! AGTGAATGAGACAAAATAAA+GGG - chr1_2:5889994-5890013 Msa0051770:intron 25.0%
!! TAGGCTTAAATGTAATTTTC+AGG + chr1_2:5890093-5890112 None:intergenic 25.0%
! GTTAACTAATAAAATCCACT+AGG + chr1_2:5890139-5890158 None:intergenic 25.0%
! GATATTAATACAAGTCTACA+AGG + chr1_2:5890221-5890240 None:intergenic 25.0%
! ACCCTTGAAAATATATGATA+AGG - chr1_2:5890319-5890338 Msa0051770:intron 25.0%
!! GCCTTATCATATATTTTCAA+GGG + chr1_2:5890323-5890342 None:intergenic 25.0%
!! TGCCTTATCATATATTTTCA+AGG + chr1_2:5890324-5890343 None:intergenic 25.0%
! ACAACTAGTGTGAAAATTAA+AGG - chr1_2:5890429-5890448 Msa0051770:intron 25.0%
! TCATGTAGATAAATCATATG+TGG + chr1_2:5890459-5890478 None:intergenic 25.0%
! CTAATTGTAAATGAAAGTTG+TGG + chr1_2:5890625-5890644 None:intergenic 25.0%
!!! ACATGAAATGTAAGTTTTGT+AGG - chr1_2:5890658-5890677 Msa0051770:three_prime_UTR 25.0%
! TAAAATGACATTGAGATATG+GGG - chr1_2:5890733-5890752 Msa0051770:three_prime_UTR 25.0%
!!! TGATTTTTTGTTATCATGAG+TGG - chr1_2:5890799-5890818 Msa0051770:three_prime_UTR 25.0%
!!! GATTTTTTGTTATCATGAGT+GGG - chr1_2:5890800-5890819 Msa0051770:three_prime_UTR 25.0%
! TTAATTATGAATTTCACCTG+TGG - chr1_2:5890896-5890915 Msa0051770:three_prime_UTR 25.0%
! AAAAATACAACTCAAAGAAC+CGG + chr1_2:5890987-5891006 None:intergenic 25.0%
! TAACAATACAATTCATATCG+TGG + chr1_2:5891266-5891285 None:intergenic 25.0%
! GTCTACTTAATATAGTATGT+AGG - chr1_2:5891453-5891472 Msa0051770:CDS 25.0%
! CTCAAAATTACCAAATTATC+CGG + chr1_2:5891754-5891773 None:intergenic 25.0%
AGAATAATTCCCATCTCATT+AGG - chr1_2:5887925-5887944 Msa0051770:three_prime_UTR 30.0%
CTAAGGTTAATTTCATTCGA+AGG - chr1_2:5888137-5888156 Msa0051770:three_prime_UTR 30.0%
ATTTCATTCGAAGGAATCAT+AGG - chr1_2:5888146-5888165 Msa0051770:three_prime_UTR 30.0%
!! TGTTTTTGTGAAGATTGTGA+CGG - chr1_2:5888239-5888258 Msa0051770:three_prime_UTR 30.0%
!!! TGATTCATTGGTTTTGGTTT+CGG - chr1_2:5888323-5888342 Msa0051770:intron 30.0%
! CTACAACATTTTCTCAAACA+CGG + chr1_2:5888355-5888374 None:intergenic 30.0%
! AGTAGAAATTGTTGTTGTTG+GGG - chr1_2:5888392-5888411 Msa0051770:intron 30.0%
AATGTTGAATATTTGATGGG+AGG - chr1_2:5888483-5888502 Msa0051770:intron 30.0%
!! GATGATGGGTATATAATAGA+TGG - chr1_2:5888561-5888580 Msa0051770:intron 30.0%
CGAAGAAATCACTATTGTTA+TGG - chr1_2:5888687-5888706 Msa0051770:intron 30.0%
!! AGAATGGATTATCGAAATTG+AGG - chr1_2:5888862-5888881 Msa0051770:intron 30.0%
AGTTGAGTTATGTTGAATTG+AGG - chr1_2:5888888-5888907 Msa0051770:intron 30.0%
! TTATGATGGTATGTTTTGCA+TGG - chr1_2:5889043-5889062 Msa0051770:intron 30.0%
GAAGTTATTTGTCTTGACTT+TGG - chr1_2:5889355-5889374 Msa0051770:intron 30.0%
!!! TGTTGTTTTGTTGATTTGAG+TGG - chr1_2:5889411-5889430 Msa0051770:intron 30.0%
!!! TTTTGTTGATTTGAGTGGAT+TGG - chr1_2:5889416-5889435 Msa0051770:intron 30.0%
ATTGGAGTTTACTTGGAAAT+CGG - chr1_2:5889434-5889453 Msa0051770:intron 30.0%
GTAAATGAGGCAAAAATAGA+GGG + chr1_2:5889495-5889514 None:intergenic 30.0%
TGTAAATGAGGCAAAAATAG+AGG + chr1_2:5889496-5889515 None:intergenic 30.0%
AGGAACCAAAATTGTAAATG+AGG + chr1_2:5889508-5889527 None:intergenic 30.0%
ATTCGTGGATTTAAAAATGG+AGG + chr1_2:5889528-5889547 None:intergenic 30.0%
!!! CGGGTTGATTTTTTATGATT+TGG - chr1_2:5889647-5889666 Msa0051770:intron 30.0%
TGAAAACGAGTTATTAAGAG+AGG - chr1_2:5889707-5889726 Msa0051770:intron 30.0%
TCAACCTCAAAATGTATATG+GGG - chr1_2:5889891-5889910 Msa0051770:intron 30.0%
!! ATCATTTTAAAAATTGGGGG+GGG - chr1_2:5889925-5889944 Msa0051770:intron 30.0%
AATAAAATCCACTAGGACAT+TGG + chr1_2:5890132-5890151 None:intergenic 30.0%
CAAGGATATTAAGACAAGTT+TGG + chr1_2:5890203-5890222 None:intergenic 30.0%
ATATGATAAGGCATATTTGG+TGG - chr1_2:5890331-5890350 Msa0051770:intron 30.0%
!! TACTTTTGAGAGTTGTGATT+TGG + chr1_2:5890706-5890725 None:intergenic 30.0%
TAAAGCTTCTATTGTCAAGT+TGG - chr1_2:5890849-5890868 Msa0051770:three_prime_UTR 30.0%
!! AAGTTGGATTAAGTTGAAGA+TGG - chr1_2:5890865-5890884 Msa0051770:three_prime_UTR 30.0%
!!! TTGAGTCAGAGTTTTAAAAC+TGG - chr1_2:5891033-5891052 Msa0051770:exon 30.0%
!!! GAGTTTTAAACAAAGAGACA+AGG + chr1_2:5891292-5891311 None:intergenic 30.0%
ATCTGCCAATTTCAGAAAAT+AGG + chr1_2:5891339-5891358 None:intergenic 30.0%
!!! ATTTTCTGAAATTGGCAGAT+AGG - chr1_2:5891339-5891358 Msa0051770:CDS 30.0%
ATGATGTTAACCGGATAATT+TGG - chr1_2:5891741-5891760 Msa0051770:CDS 30.0%
!! CGGATAATTTGGTAATTTTG+AGG - chr1_2:5891752-5891771 Msa0051770:CDS 30.0%
! TAACATGGAACATTTTCAGT+CGG + chr1_2:5891808-5891827 None:intergenic 30.0%
ACAGAGGAATTTCACTGAAT+AGG + chr1_2:5887864-5887883 None:intergenic 35.0%
! AACAACAAGCTTTTGAACAG+AGG + chr1_2:5887880-5887899 None:intergenic 35.0%
AAGGGTAAACCTAATGAGAT+GGG + chr1_2:5887937-5887956 None:intergenic 35.0%
AAAGGGTAAACCTAATGAGA+TGG + chr1_2:5887938-5887957 None:intergenic 35.0%
! TTTACCCTTTTTCTTGTCGT+TGG - chr1_2:5887948-5887967 Msa0051770:three_prime_UTR 35.0%
AGTTCCAACGACAAGAAAAA+GGG + chr1_2:5887955-5887974 None:intergenic 35.0%
ATAAAGGCTGTTGATGTTGT+TGG + chr1_2:5887979-5887998 None:intergenic 35.0%
AACAACATCAACAGCCTTTA+TGG - chr1_2:5887978-5887997 Msa0051770:three_prime_UTR 35.0%
AGAGAAAGGAATTAGGGTTA+GGG + chr1_2:5888006-5888025 None:intergenic 35.0%
CTTGAAGTGAATGTTGACAT+CGG + chr1_2:5888062-5888081 None:intergenic 35.0%
AATGTTGTAGAAAGTTAGGG+AGG - chr1_2:5888365-5888384 Msa0051770:intron 35.0%
! TTGTTGTTGTTGGGGATTAT+TGG - chr1_2:5888400-5888419 Msa0051770:intron 35.0%
! TGTTGTTGTTGGGGATTATT+GGG - chr1_2:5888401-5888420 Msa0051770:intron 35.0%
! CTTTGGATTCTTGTTGTGAA+TGG - chr1_2:5888459-5888478 Msa0051770:intron 35.0%
AGAGGATTTGGATGATGAAT+TGG - chr1_2:5888515-5888534 Msa0051770:intron 35.0%
ATGGAGAACAAGATGAAGAT+GGG - chr1_2:5888580-5888599 Msa0051770:intron 35.0%
! TTGTCAAATAGCGACTTTTG+CGG - chr1_2:5888733-5888752 Msa0051770:intron 35.0%
!!! TTTTTTCCGCGATACACAAT+TGG - chr1_2:5888796-5888815 Msa0051770:intron 35.0%
GTATTTCCAATTGTGTATCG+CGG + chr1_2:5888805-5888824 None:intergenic 35.0%
TAAACGAAGCTAGACTGAAT+TGG - chr1_2:5888830-5888849 Msa0051770:intron 35.0%
AAACGAAGCTAGACTGAATT+GGG - chr1_2:5888831-5888850 Msa0051770:intron 35.0%
TAACTTCAAGGGTTTCATTG+TGG - chr1_2:5888951-5888970 Msa0051770:intron 35.0%
CAAAACATACCATCATAAGC+CGG + chr1_2:5889041-5889060 None:intergenic 35.0%
! TGCTATGTTCGTAGTTTTTG+TGG - chr1_2:5889237-5889256 Msa0051770:intron 35.0%
! GCTATGTTCGTAGTTTTTGT+GGG - chr1_2:5889238-5889257 Msa0051770:intron 35.0%
! CTATGTTCGTAGTTTTTGTG+GGG - chr1_2:5889239-5889258 Msa0051770:intron 35.0%
GGGAGCAAATTCATAGTTTA+TGG - chr1_2:5889259-5889278 Msa0051770:intron 35.0%
! TGAACATTTTCAAAACTGGC+AGG + chr1_2:5889556-5889575 None:intergenic 35.0%
TGACAAATGAGATGCTTATG+TGG + chr1_2:5889859-5889878 None:intergenic 35.0%
CAACCTCAAAATGTATATGG+GGG - chr1_2:5889892-5889911 Msa0051770:intron 35.0%
AACCTCAAAATGTATATGGG+GGG - chr1_2:5889893-5889912 Msa0051770:intron 35.0%
!! TCATTTTAAAAATTGGGGGG+GGG - chr1_2:5889926-5889945 Msa0051770:intron 35.0%
TGGATTGAGCGTTTAAGTAT+AGG + chr1_2:5890112-5890131 None:intergenic 35.0%
ATTAGTTAACCTACCACCTA+CGG - chr1_2:5890149-5890168 Msa0051770:intron 35.0%
ATTAAGACAAGTTTGGTCCA+TGG + chr1_2:5890196-5890215 None:intergenic 35.0%
! ATATTTGGTGGTATACTGGA+AGG - chr1_2:5890343-5890362 Msa0051770:intron 35.0%
AATGTGCTCATGTGTTTGAT+TGG + chr1_2:5890409-5890428 None:intergenic 35.0%
GATTACATACATGTACATCG+AGG - chr1_2:5890477-5890496 Msa0051770:intron 35.0%
!! GAGGCCTTATCTTTTTATCT+TGG - chr1_2:5890496-5890515 Msa0051770:intron 35.0%
ATTGAGATATGGGGATGTTA+CGG - chr1_2:5890742-5890761 Msa0051770:three_prime_UTR 35.0%
!! TGGATTAAGTTGAAGATGGA+AGG - chr1_2:5890869-5890888 Msa0051770:three_prime_UTR 35.0%
!!! TTGTTGACTTGAGTTTTCCA+TGG - chr1_2:5890942-5890961 Msa0051770:three_prime_UTR 35.0%
! ACTTGAGTTTTCCATGGATA+TGG - chr1_2:5890948-5890967 Msa0051770:three_prime_UTR 35.0%
!!! TCAGAGTTTTAAAACTGGAC+TGG - chr1_2:5891038-5891057 Msa0051770:CDS 35.0%
!!! ACCGTTTTAAAACTCAGAAC+TGG - chr1_2:5891061-5891080 Msa0051770:CDS 35.0%
!!! CCCAGTTCTGAGTTTTAAAA+CGG + chr1_2:5891065-5891084 None:intergenic 35.0%
!!! CCGTTTTAAAACTCAGAACT+GGG - chr1_2:5891062-5891081 Msa0051770:CDS 35.0%
!!! TTTTAAAACTCAGAACTGGG+AGG - chr1_2:5891065-5891084 Msa0051770:CDS 35.0%
! ACTGGACAGTTTTTCTAAAC+CGG - chr1_2:5891104-5891123 Msa0051770:CDS 35.0%
CATAAAGGAAAAGTTAAGCC+CGG + chr1_2:5891130-5891149 None:intergenic 35.0%
AGCTAAGTAGATCTAGACAA+TGG - chr1_2:5891501-5891520 Msa0051770:CDS 35.0%
ACATGATTTCACAAGCTCAA+TGG + chr1_2:5891549-5891568 None:intergenic 35.0%
GACAATGTTATGGCACTACT+TGG + chr1_2:5887802-5887821 None:intergenic 40.0%
ACATCACATCTGAAAAGACG+AGG + chr1_2:5887903-5887922 None:intergenic 40.0%
CAGTTCCAACGACAAGAAAA+AGG + chr1_2:5887956-5887975 None:intergenic 40.0%
TTAGGGTTAGGGTTCCATAA+AGG + chr1_2:5887995-5888014 None:intergenic 40.0%
CAGAGAAAGGAATTAGGGTT+AGG + chr1_2:5888007-5888026 None:intergenic 40.0%
CTGCAATAATGCTCCACTTA+AGG - chr1_2:5888179-5888198 Msa0051770:three_prime_UTR 40.0%
AATAATGCTCCACTTAAGGC+TGG - chr1_2:5888183-5888202 Msa0051770:three_prime_UTR 40.0%
ATTCCAAATCCAGCCTTAAG+TGG + chr1_2:5888195-5888214 None:intergenic 40.0%
ACTTAAGGCTGGATTTGGAA+TGG - chr1_2:5888194-5888213 Msa0051770:three_prime_UTR 40.0%
!!! TGGGGTTGATTCATTGGTTT+TGG - chr1_2:5888317-5888336 Msa0051770:intron 40.0%
! GTTGTTGTTGGGGATTATTG+GGG - chr1_2:5888402-5888421 Msa0051770:intron 40.0%
GATTATTGGGGTAGGGATTT+GGG - chr1_2:5888414-5888433 Msa0051770:intron 40.0%
ATTATTGGGGTAGGGATTTG+GGG - chr1_2:5888415-5888434 Msa0051770:intron 40.0%
!! ATGCTGATTTGTGGCTTCTT+TGG - chr1_2:5888442-5888461 Msa0051770:intron 40.0%
ATATTTGATGGGAGGAACAG+TGG - chr1_2:5888491-5888510 Msa0051770:intron 40.0%
GATGGAGAACAAGATGAAGA+TGG - chr1_2:5888579-5888598 Msa0051770:intron 40.0%
TTGTTATGGGATGCGCTATA+TGG - chr1_2:5888701-5888720 Msa0051770:intron 40.0%
AACGAAGCTAGACTGAATTG+GGG - chr1_2:5888832-5888851 Msa0051770:intron 40.0%
TTGTGTAGCGGTAACTTCAA+GGG - chr1_2:5888940-5888959 Msa0051770:intron 40.0%
GGTTTCATTGTGGTTATCTG+AGG - chr1_2:5888961-5888980 Msa0051770:intron 40.0%
GAAACTTCAGCAGTACAGAA+TGG + chr1_2:5889019-5889038 None:intergenic 40.0%
TTCTGTACTGCTGAAGTTTC+CGG - chr1_2:5889019-5889038 Msa0051770:intron 40.0%
!! TGAGTGGATTGGAGTTTACT+TGG - chr1_2:5889427-5889446 Msa0051770:intron 40.0%
ATGACACGACACTATCTAAG+TGG + chr1_2:5889825-5889844 None:intergenic 40.0%
ACCTCAAAATGTATATGGGG+GGG - chr1_2:5889894-5889913 Msa0051770:intron 40.0%
!! CATTTTAAAAATTGGGGGGG+GGG - chr1_2:5889927-5889946 Msa0051770:intron 40.0%
!! ATTTTAAAAATTGGGGGGGG+GGG - chr1_2:5889928-5889947 Msa0051770:intron 40.0%
TTAGTTAACCTACCACCTAC+GGG - chr1_2:5890150-5890169 Msa0051770:intron 40.0%
AATAGTTACCCCCTGAAGAT+AGG - chr1_2:5890274-5890293 Msa0051770:intron 40.0%
AGGGTCTATATTGTAGTCAG+AGG + chr1_2:5890304-5890323 None:intergenic 40.0%
! AGGCATATTTGGTGGTATAC+TGG - chr1_2:5890339-5890358 Msa0051770:intron 40.0%
! GGTATTGGATGTGTTCATTG+AGG - chr1_2:5890517-5890536 Msa0051770:intron 40.0%
TTGAGATATGGGGATGTTAC+GGG - chr1_2:5890743-5890762 Msa0051770:three_prime_UTR 40.0%
! TTACGGGGTCATTTAGAACA+CGG - chr1_2:5890759-5890778 Msa0051770:three_prime_UTR 40.0%
! TTTAGAACACGGTGTAGTGT+AGG - chr1_2:5890770-5890789 Msa0051770:three_prime_UTR 40.0%
! AGTTTTCCATGGATATGGTG+TGG - chr1_2:5890953-5890972 Msa0051770:three_prime_UTR 40.0%
! GTTTTCCATGGATATGGTGT+GGG - chr1_2:5890954-5890973 Msa0051770:three_prime_UTR 40.0%
ATACAACTCAAAGAACCGGT+CGG + chr1_2:5890983-5891002 None:intergenic 40.0%
GAGAAATTGAAGTCGCATGT+CGG - chr1_2:5891220-5891239 Msa0051770:CDS 40.0%
ACAATTCATATCGTGGTGCA+GGG + chr1_2:5891259-5891278 None:intergenic 40.0%
TACAATTCATATCGTGGTGC+AGG + chr1_2:5891260-5891279 None:intergenic 40.0%
! TGCATAATCTTCCATCGACT+AGG + chr1_2:5891390-5891409 None:intergenic 40.0%
AAGTAGACTCGAGCAAGAAT+CGG + chr1_2:5891441-5891460 None:intergenic 40.0%
CAATGCGACATGATGTTAAC+CGG - chr1_2:5891732-5891751 Msa0051770:intron 40.0%
AGCAACACCGATGAACATAA+TGG - chr1_2:5891778-5891797 Msa0051770:CDS 40.0%
CGGCAATCCATTATGTTCAT+CGG + chr1_2:5891788-5891807 None:intergenic 40.0%
TCCATGTTAGAAAAGCTCAC+CGG - chr1_2:5891819-5891838 Msa0051770:CDS 40.0%
GTGATCTCTTTGAGCTTTAC+CGG + chr1_2:5891841-5891860 None:intergenic 40.0%
!! TCACGTGCTTTAGAGGCATT+AGG + chr1_2:5887832-5887851 None:intergenic 45.0%
!! TGCCTCTAAAGCACGTGAAT+CGG - chr1_2:5887834-5887853 Msa0051770:three_prime_UTR 45.0%
CACGGCAGAGAAAGGAATTA+GGG + chr1_2:5888012-5888031 None:intergenic 45.0%
ACACGGCAGAGAAAGGAATT+AGG + chr1_2:5888013-5888032 None:intergenic 45.0%
TGCATTCGTAACCACAGACA+CGG + chr1_2:5888030-5888049 None:intergenic 45.0%
GTGAAGATTGTGACGGTTCA+TGG - chr1_2:5888246-5888265 Msa0051770:three_prime_UTR 45.0%
GATTGTGACGGTTCATGGTA+AGG - chr1_2:5888251-5888270 Msa0051770:three_prime_UTR 45.0%
!! TGCTGATTCGTCGTTGAAGT+GGG - chr1_2:5888281-5888300 Msa0051770:intron 45.0%
TTGTTGGGGATTATTGGGGT+AGG - chr1_2:5888406-5888425 Msa0051770:intron 45.0%
TGTTGGGGATTATTGGGGTA+GGG - chr1_2:5888407-5888426 Msa0051770:intron 45.0%
GGATTATTGGGGTAGGGATT+TGG - chr1_2:5888413-5888432 Msa0051770:intron 45.0%
AGGAACAGTGGAAGAGGATT+TGG - chr1_2:5888503-5888522 Msa0051770:intron 45.0%
ACGAAGCTAGACTGAATTGG+GGG - chr1_2:5888833-5888852 Msa0051770:intron 45.0%
GTTGTGTAGCGGTAACTTCA+AGG - chr1_2:5888939-5888958 Msa0051770:intron 45.0%
CTGAAGTTTCCGGCTTATGA+TGG - chr1_2:5889029-5889048 Msa0051770:intron 45.0%
AACTGGCAGGATCAAATTCG+TGG + chr1_2:5889543-5889562 None:intergenic 45.0%
! TCCCCCCCATATACATTTTG+AGG + chr1_2:5889898-5889917 None:intergenic 45.0%
!! TTTTAAAAATTGGGGGGGGG+GGG - chr1_2:5889929-5889948 Msa0051770:intron 45.0%
TAGTTAACCTACCACCTACG+GGG - chr1_2:5890151-5890170 Msa0051770:intron 45.0%
AGAGGACTTCCTATCTTCAG+GGG + chr1_2:5890286-5890305 None:intergenic 45.0%
CAGAGGACTTCCTATCTTCA+GGG + chr1_2:5890287-5890306 None:intergenic 45.0%
TCAGAGGACTTCCTATCTTC+AGG + chr1_2:5890288-5890307 None:intergenic 45.0%
TGAGATATGGGGATGTTACG+GGG - chr1_2:5890744-5890763 Msa0051770:three_prime_UTR 45.0%
! GACAGTTTTTCTAAACCGGC+CGG - chr1_2:5891108-5891127 Msa0051770:CDS 45.0%
! ACAGTTTTTCTAAACCGGCC+GGG - chr1_2:5891109-5891128 Msa0051770:CDS 45.0%
CAATTCATATCGTGGTGCAG+GGG + chr1_2:5891258-5891277 None:intergenic 45.0%
ATTGGCAGATAGGCGATTAG+AGG - chr1_2:5891349-5891368 Msa0051770:CDS 45.0%
TTGGCAGATAGGCGATTAGA+GGG - chr1_2:5891350-5891369 Msa0051770:CDS 45.0%
! GTGGTTTTCATCCTAGTCGA+TGG - chr1_2:5891376-5891395 Msa0051770:CDS 45.0%
! AGTGCTATTACAGCTGAACG+AGG - chr1_2:5891410-5891429 Msa0051770:CDS 45.0%
! GTGCTATTACAGCTGAACGA+GGG - chr1_2:5891411-5891430 Msa0051770:CDS 45.0%
GCTCAATGGCGCTATAAACA+GGG + chr1_2:5891535-5891554 None:intergenic 45.0%
AGCTCAATGGCGCTATAAAC+AGG + chr1_2:5891536-5891555 None:intergenic 45.0%
CGGTTAACATCATGTCGCAT+TGG + chr1_2:5891734-5891753 None:intergenic 45.0%
! ACCGGTGAGCTTTTCTAACA+TGG + chr1_2:5891823-5891842 None:intergenic 45.0%
!! AAATAAAGAAAAAAAAATAT+AGG + chr1_2:5890038-5890057 None:intergenic 5.0%
!! GCCTCTAAAGCACGTGAATC+GGG - chr1_2:5887835-5887854 Msa0051770:three_prime_UTR 50.0%
TCCCGATTCACGTGCTTTAG+AGG + chr1_2:5887839-5887858 None:intergenic 50.0%
GCTCCACTTAAGGCTGGATT+TGG - chr1_2:5888189-5888208 Msa0051770:three_prime_UTR 50.0%
! GGCTGGATTTGGAATGGCTT+CGG - chr1_2:5888200-5888219 Msa0051770:three_prime_UTR 50.0%
! GCTGGATTTGGAATGGCTTC+GGG - chr1_2:5888201-5888220 Msa0051770:three_prime_UTR 50.0%
! CTGGATTTGGAATGGCTTCG+GGG - chr1_2:5888202-5888221 Msa0051770:three_prime_UTR 50.0%
GACGGTTCATGGTAAGGTGA+AGG - chr1_2:5888257-5888276 Msa0051770:three_prime_UTR 50.0%
!! CTGCTGATTCGTCGTTGAAG+TGG - chr1_2:5888280-5888299 Msa0051770:intron 50.0%
TTGAAGTGGGAGATGAGGAG+TGG - chr1_2:5888294-5888313 Msa0051770:intron 50.0%
! GAGTGGTGGGGTTGATTCAT+TGG - chr1_2:5888311-5888330 Msa0051770:intron 50.0%
!! TGGGGAGGAATGCTGATTTG+TGG - chr1_2:5888433-5888452 Msa0051770:intron 50.0%
CGAAGCTAGACTGAATTGGG+GGG - chr1_2:5888834-5888853 Msa0051770:intron 50.0%
GAAGCTAGACTGAATTGGGG+GGG - chr1_2:5888835-5888854 Msa0051770:intron 50.0%
GTGTCGTGTCATCAACTGAG+TGG - chr1_2:5889833-5889852 Msa0051770:intron 50.0%
TTTAAAAATTGGGGGGGGGG+GGG - chr1_2:5889930-5889949 Msa0051770:intron 50.0%
CGCTCAATCCAATGTCCTAG+TGG - chr1_2:5890121-5890140 Msa0051770:intron 50.0%
GAGGATCTGGGTTCAAACCA+TGG - chr1_2:5890176-5890195 Msa0051770:intron 50.0%
GAGGACTTCCTATCTTCAGG+GGG + chr1_2:5890285-5890304 None:intergenic 50.0%
GGTGGTATACTGGAAGGTTG+TGG - chr1_2:5890349-5890368 Msa0051770:intron 50.0%
! TGGGAGGTGACTGGTTATAG+TGG - chr1_2:5891081-5891100 Msa0051770:CDS 50.0%
!! GGTGACTGGTTATAGTGGAC+TGG - chr1_2:5891086-5891105 Msa0051770:CDS 50.0%
AAGGAAAAGTTAAGCCCGGC+CGG + chr1_2:5891126-5891145 None:intergenic 50.0%
! ATAGGCGATTAGAGGGCATG+TGG - chr1_2:5891357-5891376 Msa0051770:CDS 50.0%
TCCTTTCTCTGCCGTGTCTG+TGG - chr1_2:5888016-5888035 Msa0051770:three_prime_UTR 55.0%
ACCACAGACACGGCAGAGAA+AGG + chr1_2:5888020-5888039 None:intergenic 55.0%
TTGGAATGGCTTCGGGGTTG+CGG - chr1_2:5888208-5888227 Msa0051770:three_prime_UTR 55.0%
CGTCGTTGAAGTGGGAGATG+AGG - chr1_2:5888289-5888308 Msa0051770:intron 55.0%
AAGTGGGAGATGAGGAGTGG+TGG - chr1_2:5888297-5888316 Msa0051770:intron 55.0%
AGTGGGAGATGAGGAGTGGT+GGG - chr1_2:5888298-5888317 Msa0051770:intron 55.0%
ATTGGGGTAGGGATTTGGGG+AGG - chr1_2:5888418-5888437 Msa0051770:intron 55.0%
GATGGGAGGAACAGTGGAAG+AGG - chr1_2:5888497-5888516 Msa0051770:intron 55.0%
! GAATTGGGGGGGTGCAAGAA+TGG - chr1_2:5888846-5888865 Msa0051770:intron 55.0%
TTAAAAATTGGGGGGGGGGG+GGG - chr1_2:5889931-5889950 Msa0051770:intron 55.0%
ACCTACGGGGTAGAGGATCT+GGG - chr1_2:5890164-5890183 Msa0051770:intron 55.0%
ACACACGAGGTTGCAACCAC+AGG + chr1_2:5890915-5890934 None:intergenic 55.0%
GGTTGCAACCTCGTGTGTGT+AGG - chr1_2:5890917-5890936 Msa0051770:three_prime_UTR 55.0%
CAACAACGCCTACACACACG+AGG + chr1_2:5890928-5890947 None:intergenic 55.0%
GGTTGCCCACACCATATCCA+TGG + chr1_2:5890962-5890981 None:intergenic 55.0%
ATATGGTGTGGGCAACCGAC+CGG - chr1_2:5890965-5890984 Msa0051770:three_prime_UTR 55.0%
ACTCAGAACTGGGAGGTGAC+TGG - chr1_2:5891072-5891091 Msa0051770:CDS 55.0%
GTGGGAGATGAGGAGTGGTG+GGG - chr1_2:5888299-5888318 Msa0051770:intron 60.0%
TAAAAATTGGGGGGGGGGGG+GGG - chr1_2:5889932-5889951 Msa0051770:intron 60.0%
ACCTACCACCTACGGGGTAG+AGG - chr1_2:5890157-5890176 Msa0051770:intron 60.0%
TCCTCTACCCCGTAGGTGGT+AGG + chr1_2:5890161-5890180 None:intergenic 60.0%
CAGATCCTCTACCCCGTAGG+TGG + chr1_2:5890165-5890184 None:intergenic 60.0%
CACCTACGGGGTAGAGGATC+TGG - chr1_2:5890163-5890182 Msa0051770:intron 60.0%
ACCCAGATCCTCTACCCCGT+AGG + chr1_2:5890168-5890187 None:intergenic 60.0%
AAAAATTGGGGGGGGGGGGG+GGG - chr1_2:5889933-5889952 Msa0051770:intron 65.0%
ATGGCTTCGGGGTTGCGGCG+AGG - chr1_2:5888213-5888232 Msa0051770:three_prime_UTR 70.0%
AAAATTGGGGGGGGGGGGGG+GGG - chr1_2:5889934-5889953 Msa0051770:intron 70.0%
GCTTCGGGGTTGCGGCGAGG+TGG - chr1_2:5888216-5888235 Msa0051770:three_prime_UTR 75.0%
AAATTGGGGGGGGGGGGGGG+GGG - chr1_2:5889935-5889954 Msa0051770:intron 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG - chr1_2:5889936-5889955 Msa0051770:intron 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - chr1_2:5889937-5889956 Msa0051770:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5887793 5891861 5887793 ID=Msa0051770;Name=Msa0051770
chr1_2 mRNA 5887793 5891861 5887793 ID=Msa0051770-mRNA-1;Parent=Msa0051770;Name=Msa0051770-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.25|0.2|1|0|0|5|952|253
chr1_2 exon 5887793 5888297 5887793 ID=Msa0051770-mRNA-1:exon:1916;Parent=Msa0051770-mRNA-1
chr1_2 exon 5890590 5891279 5890590 ID=Msa0051770-mRNA-1:exon:1915;Parent=Msa0051770-mRNA-1
chr1_2 exon 5891301 5891475 5891301 ID=Msa0051770-mRNA-1:exon:1914;Parent=Msa0051770-mRNA-1
chr1_2 exon 5891487 5891707 5891487 ID=Msa0051770-mRNA-1:exon:1913;Parent=Msa0051770-mRNA-1
chr1_2 exon 5891739 5891861 5891739 ID=Msa0051770-mRNA-1:exon:1912;Parent=Msa0051770-mRNA-1
chr1_2 CDS 5891739 5891861 5891739 ID=Msa0051770-mRNA-1:cds;Parent=Msa0051770-mRNA-1
chr1_2 CDS 5891487 5891707 5891487 ID=Msa0051770-mRNA-1:cds;Parent=Msa0051770-mRNA-1
chr1_2 CDS 5891301 5891475 5891301 ID=Msa0051770-mRNA-1:cds;Parent=Msa0051770-mRNA-1
chr1_2 CDS 5891037 5891279 5891037 ID=Msa0051770-mRNA-1:cds;Parent=Msa0051770-mRNA-1
chr1_2 three_prime_UTR 5890590 5891036 5890590 ID=Msa0051770-mRNA-1:three_prime_utr;Parent=Msa0051770-mRNA-1
chr1_2 three_prime_UTR 5887793 5888297 5887793 ID=Msa0051770-mRNA-1:three_prime_utr;Parent=Msa0051770-mRNA-1
Gene Sequence

>Msa0051770

ATGTTACCAAGTAGTGCCATAACATTGTCTTTTATACCTAATGCCTCTAAAGCACGTGAATCGGGATACCTATTCAGTGAAATTCCTCTGTTCAAAAGCTTGTTGTTCCTCGTCTTTTCAGATGTTTACCCTTTTTCTTGTCGTTGGAACTGCCAACAACATCAACAGCCTTTATGGAACCCTAACCCTAATTCCTTTCTCTGCCGTGTCTGTGGTTACGAATGCAAATCACTTACCGATGTCAACATTCACTTCAAGCGAGTTCATGAGTATCAGACGCTGAATCGATTGAAATCTATTAAATTGAAACGTTCTAAGGTTAATTTCATTCGAAGGAATCATAGCTGCAATAATGCTCCACTTAAGGCTGGATTTGGAATGGCTTCGGGGTTGCGGCGAGGTGGTGTTTTTGTGAAGATTGTGACGGTTCATGGTAAGGTGAAGGCTGCTGATTCGTCGTTGAAGTGGGAGATGAGGAGTGGTGGGGTTGATTCATTGGTTTTGGTTTCGGATGATTCCAAAGTTAGGGAGGTGAAAGTAGAAATTGTTGTTGTTGGGGATTATTGGGGTAGGGATTTGGGGAGGAATGCTGATTTGTGGCTTCTTTGGATTCTTGTTGTGAATGGAAATGTTGAATATTTGATGGGAGGAACAGTGGAAGAGGATTTGGATGATGAATTGGAAGAAGAATATGATGATTATGATGATGATGGGTATATAATAGATGGAGAACAAGATGAAGATGGGTTTTATGTTTATTGA

Protein sequence

>Msa0051770

MLPSSAITLSFIPNASKARESGYLFSEIPLFKSLLFLVFSDVYPFSCRWNCQQHQQPLWNPNPNSFLCRVCGYECKSLTDVNIHFKRVHEYQTLNRLKSIKLKRSKVNFIRRNHSCNNAPLKAGFGMASGLRRGGVFVKIVTVHGKVKAADSSLKWEMRSGGVDSLVLVSDDSKVREVKVEIVVVGDYWGRDLGRNADLWLLWILVVNGNVEYLMGGTVEEDLDDELEEEYDDYDDDGYIIDGEQDEDGFYVY*