AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520060 MtrunA17_Chr3g0135231 86.937 666 58 5 10 667 1 645 0.0 1130
Msa0520060 MtrunA17_Chr3g0134631 89.627 617 38 5 10 608 1 609 0.0 1064
Msa0520060 MtrunA17_Chr3g0134631 71.963 107 20 1 570 666 718 824 8.06e-36 144
Msa0520060 MtrunA17_Chr8g0385811 87.175 616 54 5 10 608 1 608 0.0 1033
Msa0520060 MtrunA17_Chr8g0385811 71.963 107 20 1 570 666 717 823 8.49e-36 144
Msa0520060 MtrunA17_Chr3g0131711 81.138 615 89 6 10 608 1 604 0.0 956
Msa0520060 MtrunA17_Chr3g0131711 71.963 107 20 1 570 666 713 819 8.44e-36 144
Msa0520060 MtrunA17_Chr3g0102771 48.775 449 170 8 94 496 4 438 1.29e-120 379
Msa0520060 MtrunA17_Chr3g0102771 60.256 78 30 1 591 667 619 696 5.14e-19 91.7
Msa0520060 MtrunA17_Chr7g0218421 39.286 588 276 14 71 590 62 636 4.68e-115 368
Msa0520060 MtrunA17_Chr7g0218421 43.434 99 52 1 570 664 761 859 7.03e-15 78.6
Msa0520060 MtrunA17_Chr6g0454071 40.354 565 252 14 95 590 84 632 2.15e-114 366
Msa0520060 MtrunA17_Chr6g0454071 45.455 99 50 1 570 664 757 855 8.95e-17 84.7
Msa0520060 MtrunA17_Chr3g0137071 42.495 473 246 8 95 559 96 550 5.78e-111 357
Msa0520060 MtrunA17_Chr3g0137071 49.383 81 36 1 591 666 790 870 5.59e-14 75.9
Msa0520060 MtrunA17_Chr3g0131351 39.024 574 272 17 91 608 100 651 3.10e-106 344
Msa0520060 MtrunA17_Chr3g0131351 51.765 85 31 1 590 664 780 864 2.54e-16 83.2
Msa0520060 MtrunA17_Chr4g0061371 42.380 479 205 10 189 608 104 570 4.69e-103 334
Msa0520060 MtrunA17_Chr4g0061371 43.617 94 53 0 570 663 679 772 2.27e-15 80.1
Msa0520060 MtrunA17_Chr7g0225161 37.478 579 283 14 95 608 6 570 1.16e-100 328
Msa0520060 MtrunA17_Chr7g0225161 43.617 94 53 0 570 663 679 772 8.68e-15 78.2
Msa0520060 MtrunA17_Chr1g0188061 72.650 117 31 1 124 240 20 135 2.03e-46 168
Msa0520060 MtrunA17_Chr1g0188061 35.065 231 116 4 410 640 153 349 5.20e-24 103
Msa0520060 MtrunA17_Chr6g0468911 88.095 42 5 0 232 273 164 205 8.89e-17 80.5
Msa0520060 MtrunA17_Chr5g0398561 29.134 127 87 2 95 218 86 212 4.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520060 AT5G50920.1 76.537 618 117 8 7 608 1 606 0.0 894
Msa0520060 AT5G50920.1 71.963 107 20 1 570 666 715 821 1.01e-35 145
Msa0520060 AT3G48870.2 76.109 586 125 5 27 608 22 596 0.0 844
Msa0520060 AT3G48870.2 71.028 107 21 1 570 666 705 811 4.08e-35 143
Msa0520060 AT3G48870.1 76.109 586 125 5 27 608 53 627 0.0 843
Msa0520060 AT3G48870.1 71.028 107 21 1 570 666 736 842 5.03e-35 142
Msa0520060 AT3G48870.4 76.109 586 125 5 27 608 53 627 0.0 843
Msa0520060 AT3G48870.4 71.028 107 21 1 570 666 736 842 5.03e-35 142
Msa0520060 AT3G48870.3 76.109 586 125 5 27 608 53 627 0.0 843
Msa0520060 AT3G48870.3 71.028 107 21 1 570 666 736 842 5.03e-35 142
Msa0520060 AT3G45450.1 57.027 370 102 6 91 453 1 320 6.39e-121 363
Msa0520060 AT5G15450.1 38.325 621 305 15 38 590 20 630 2.37e-112 361
Msa0520060 AT5G15450.1 51.948 77 34 1 591 664 776 852 8.27e-15 79.0
Msa0520060 AT2G25140.1 42.798 486 243 10 86 558 77 540 1.07e-110 356
Msa0520060 AT2G25140.1 50.649 77 33 1 591 662 781 857 1.78e-13 74.7
Msa0520060 AT5G51070.1 40.260 539 277 9 90 590 78 609 5.31e-110 354
Msa0520060 AT5G51070.1 54.651 86 28 1 590 664 754 839 1.90e-18 90.5
Msa0520060 AT1G74310.2 38.542 576 278 13 95 608 6 567 7.96e-108 345
Msa0520060 AT1G74310.2 42.553 94 54 0 570 663 676 769 7.59e-15 79.0
Msa0520060 AT1G74310.1 38.542 576 278 13 95 608 6 567 5.77e-107 345
Msa0520060 AT1G74310.1 42.553 94 54 0 570 663 676 769 8.82e-15 78.6
Msa0520060 AT4G14670.1 47.472 356 158 8 186 537 77 407 2.37e-92 299

Find 221 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGTGACAGAGAGATTT+AGG 0.099724 3_4:-72446128 Msa0520060:three_prime_UTR
TGCTTTCCCTCTATGGTTTC+AGG 0.100613 3_4:+72448689 None:intergenic
AGCACGTGTTCTTGAAAATT+TGG 0.110528 3_4:-72449230 Msa0520060:CDS
ATGATTTAAATTGAGAAATT+TGG 0.170810 3_4:-72450480 Msa0520060:five_prime_UTR
CTTCCACGCGAGCGTCTTTC+AGG 0.184946 3_4:+72449735 None:intergenic
AAAATAATCCTTGTCTTATT+GGG 0.195129 3_4:-72448778 Msa0520060:CDS
ATCAAAATCCTAGGGAAAAT+TGG 0.199430 3_4:-72448864 Msa0520060:intron
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 3_4:+72448986 None:intergenic
TTCCGTGAAATGATAAAATA+TGG 0.244328 3_4:+72449901 None:intergenic
ACCAACCTGCTTTCCCTCTA+TGG 0.247395 3_4:+72448682 None:intergenic
TTTCTAGGTCACAATTATAT+TGG 0.249003 3_4:-72449301 Msa0520060:intron
CACTGAAAGCTCAATCTCTT+TGG 0.252624 3_4:+72446143 None:intergenic
TGGAACTGAGAACCTGCTTT+TGG 0.258068 3_4:-72449281 Msa0520060:CDS
GTTGGCTCTGGCACTTTAAC+TGG 0.258175 3_4:+72447618 None:intergenic
TCAAGCCCTCTTGCTTCTTC+AGG 0.264503 3_4:+72446955 None:intergenic
TGCTAAGGTTCTAAAGTCTA+TGG 0.277785 3_4:-72449765 Msa0520060:CDS
AAGAATCATGTCTAGGGTTT+TGG 0.280790 3_4:-72450149 Msa0520060:CDS
AAGAGCTATAATGCGACTTT+TGG 0.284061 3_4:-72446052 Msa0520060:three_prime_UTR
ATTACATCCTGTGAACTCTT+TGG 0.298995 3_4:-72450026 Msa0520060:CDS
GCACGTGTTCTTGAAAATTT+GGG 0.320136 3_4:-72449229 Msa0520060:CDS
CGCATTATAGCTCTTCTTAG+AGG 0.323792 3_4:+72446060 None:intergenic
TTAGGTTATAACCCTAGATA+TGG 0.326833 3_4:-72448325 Msa0520060:intron
TTCAGTGACAGAGAGATTTA+GGG 0.329526 3_4:-72446127 Msa0520060:three_prime_UTR
TTCCCCTGCACCATCCTTCA+AGG 0.329790 3_4:-72445658 Msa0520060:three_prime_UTR
AGCCTCCCATCTTTATCAAC+AGG 0.340967 3_4:+72446435 None:intergenic
TGAACGTGTTACTCAAATCT+TGG 0.342471 3_4:-72448813 Msa0520060:CDS
GTGGAAGTCGAAAAGATAAT+TGG 0.354410 3_4:-72449719 Msa0520060:CDS
CTCTTGGCACGCGGAGTAAA+CGG 0.356129 3_4:+72449665 None:intergenic
CATAACAACTAAACAGACTA+TGG 0.356319 3_4:+72445863 None:intergenic
TTTCAGGCAACTTACAAAAC+TGG 0.356617 3_4:-72446220 Msa0520060:CDS
CTTTGAGCCTTCATAAATAG+TGG 0.357005 3_4:-72450404 Msa0520060:five_prime_UTR
CTCTCTAGCAAGCATCTTCT+CGG 0.369087 3_4:+72446017 None:intergenic
GATATGGGTCTACTTGTTAC+TGG 0.370350 3_4:-72448309 Msa0520060:CDS
TAAATACTTATGCAGTGTAT+AGG 0.372611 3_4:-72447708 Msa0520060:intron
TAACAAGTAGACCCATATCT+AGG 0.373992 3_4:+72448313 None:intergenic
AAGCCCTTTCAATATTTGTA+TGG 0.382216 3_4:+72447584 None:intergenic
GTGCTCCACTTGAGGGGAAC+AGG 0.382735 3_4:-72449093 Msa0520060:intron
GCCAGCATAATAACTTTGAT+TGG 0.383306 3_4:+72449875 None:intergenic
ATCCGACTGTCTGGTTTCTC+TGG 0.390635 3_4:-72450049 Msa0520060:CDS
ATGCCAACTTTGGAGGAATA+TGG 0.392191 3_4:-72449011 Msa0520060:CDS
GAATGCAATACAAAACTATA+AGG 0.396287 3_4:+72450442 None:intergenic
CCTTGTCTTATTGGGGAACC+TGG 0.397535 3_4:-72448770 Msa0520060:CDS
AGCTATCACATCAATATATC+AGG 0.398244 3_4:-72447497 Msa0520060:intron
TGCATAAAATATGCAAGGTC+CGG 0.400962 3_4:-72450341 Msa0520060:five_prime_UTR
GCTTTCCCTCTATGGTTTCA+GGG 0.405959 3_4:+72448690 None:intergenic
AGGGAGAGAGTGGTCGATGA+AGG 0.407016 3_4:-72446108 Msa0520060:three_prime_UTR
ATTTGACTATTGTTAGTGAT+AGG 0.413155 3_4:-72445825 Msa0520060:three_prime_UTR
GGATATAGAAATGGATCTTA+AGG 0.416980 3_4:-72446583 Msa0520060:CDS
ATTGGCGAAGGCACTGGTAT+TGG 0.417683 3_4:-72449788 Msa0520060:CDS
GATAGCTGATATAATGCTTA+AGG 0.434689 3_4:-72446187 Msa0520060:three_prime_UTR
TATTACACGGGAAGAGCATC+TGG 0.436494 3_4:+72445906 None:intergenic
AAGCATACACTGACTCTTGT+TGG 0.437395 3_4:+72445544 None:intergenic
TGGAATTTCCTCTCCAAAGC+TGG 0.439766 3_4:+72447642 None:intergenic
GATGAAGTGCACACTCTCAT+TGG 0.440257 3_4:-72448201 Msa0520060:CDS
GACTCTTGTTGGAGGTGTTG+TGG 0.441039 3_4:+72445555 None:intergenic
GAACGTGTTACTCAAATCTT+GGG 0.444979 3_4:-72448812 Msa0520060:CDS
GGTATCCCTGTTGATAAAGA+TGG 0.445321 3_4:-72446441 Msa0520060:CDS
TATAGCTCTTCTTAGAGGTC+TGG 0.445858 3_4:+72446065 None:intergenic
GTTTCACTCACAGTTGGCTC+TGG 0.448062 3_4:+72447606 None:intergenic
CTTCGACCAGCCACTAGGCC+GGG 0.448708 3_4:+72450109 None:intergenic
TTAGGCCAGAGTTCTTGAAT+AGG 0.449813 3_4:-72446260 Msa0520060:CDS
CATATTGTTGCCGCCTGGAC+TGG 0.450552 3_4:-72446462 Msa0520060:CDS
AGAGGTTAGACAGATAGTTA+AGG 0.451424 3_4:-72446929 Msa0520060:CDS
ATCAAATCTATAGCTTTGTC+AGG 0.451675 3_4:+72447116 None:intergenic
TTAGGTGGTTGAAGCCTTGA+AGG 0.453757 3_4:+72445644 None:intergenic
TGAGTAACACGTTCAATTTG+TGG 0.454252 3_4:+72448821 None:intergenic
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 3_4:+72448977 None:intergenic
TAAATATCGTGGAGAATTTG+AGG 0.457915 3_4:-72448283 Msa0520060:CDS
AAGATAATTGGAAGGGGTAG+TGG 0.460583 3_4:-72449707 Msa0520060:CDS
ACTTACAAAACTGGAGGCTT+AGG 0.462982 3_4:-72446211 Msa0520060:exon
AGCAAGGCAGAGAGTGAGGC+AGG 0.463527 3_4:-72446522 Msa0520060:CDS
AACGTCCCCGGCCTAGTGGC+TGG 0.463587 3_4:-72450115 Msa0520060:CDS
GCCAGAGTTCTTGAATAGGC+TGG 0.465682 3_4:-72446256 Msa0520060:CDS
TGGGAGGCTAACTGATAGTA+AGG 0.467482 3_4:-72446421 Msa0520060:CDS
AGGAGCTGAAGCAATACTTT+AGG 0.469498 3_4:-72446278 Msa0520060:CDS
ATGAGAACATAATACTAGCC+TGG 0.470100 3_4:+72449182 None:intergenic
GCTCTGGCACTTTAACTGGC+TGG 0.472399 3_4:+72447622 None:intergenic
TCAAGAGGAAGCTAGGCGGC+TGG 0.472735 3_4:-72449852 Msa0520060:CDS
ACTGCTACAATCCGACTGTC+TGG 0.474001 3_4:-72450058 Msa0520060:CDS
GAGAGTGAGGCAGGAGATGT+AGG 0.476103 3_4:-72446513 Msa0520060:CDS
ATCACCATTTGCAATCCGTT+GGG 0.479951 3_4:+72448715 None:intergenic
CAACTTCCCACTATTTATGA+AGG 0.483337 3_4:+72450397 None:intergenic
TGTGGCTGCCTACCCACAAC+AGG 0.484594 3_4:+72448839 None:intergenic
TAATAGCAAGATGCCAACTT+TGG 0.484716 3_4:-72449021 Msa0520060:CDS
ACCAATCAAAGTTATTATGC+TGG 0.485690 3_4:-72449876 Msa0520060:CDS
CCTTCGACCAGCCACTAGGC+CGG 0.487507 3_4:+72450108 None:intergenic
GGTATTATTGGCGAAGGCAC+TGG 0.487783 3_4:-72449794 Msa0520060:CDS
CATCACCATTTGCAATCCGT+TGG 0.487841 3_4:+72448714 None:intergenic
GTGCCATATTCCTCCAAAGT+TGG 0.488280 3_4:+72449008 None:intergenic
GCATAAAATATGCAAGGTCC+GGG 0.491454 3_4:-72450340 Msa0520060:five_prime_UTR
GAAGGTTATAATCCTAGTTA+TGG 0.493016 3_4:-72446090 Msa0520060:three_prime_UTR
CTCGCCCAACGGATTGCAAA+TGG 0.493109 3_4:-72448719 Msa0520060:CDS
TGAGCTTAGCTCAGTTGGTA+TGG 0.493252 3_4:-72450368 Msa0520060:five_prime_UTR
CCTCGTGAGCTTAGCTCAGT+TGG 0.495913 3_4:-72450373 Msa0520060:five_prime_UTR
TGGTGGCCGGGTTCGAACCC+CGG 0.496736 3_4:+72450322 None:intergenic
GGAAAATTGGATCCTGTTGT+GGG 0.497774 3_4:-72448851 Msa0520060:CDS
AGAGCTACGGGATATAGAAA+TGG 0.498674 3_4:-72446592 Msa0520060:CDS
CAAGGTCCGGGGTTCGAACC+CGG 0.499271 3_4:-72450328 Msa0520060:five_prime_UTR
AGTTATTATGCTGGCTCAAG+AGG 0.501600 3_4:-72449867 Msa0520060:CDS
ACAATCTAAGAATCATGTCT+AGG 0.501656 3_4:-72450156 Msa0520060:CDS
CAAGAGGAAGCTAGGCGGCT+GGG 0.502614 3_4:-72449851 Msa0520060:CDS
ATCAACAGGGATACCAGTCC+AGG 0.503737 3_4:+72446449 None:intergenic
TAGGTTATAACCCTAGATAT+GGG 0.503887 3_4:-72448324 Msa0520060:CDS
GCCTGGGTGCGAATATTAGT+TGG 0.503945 3_4:+72449199 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 3_4:-72449971 Msa0520060:CDS
CAAGAGCATCATCGGTATAA+CGG 0.506415 3_4:+72447532 None:intergenic
GGGAAAATTGGATCCTGTTG+TGG 0.507874 3_4:-72448852 Msa0520060:CDS
TGAATAGGCTGGAGAGCTAC+GGG 0.510340 3_4:-72446604 Msa0520060:intron
CCGGCCTAGTGGCTGGTCGA+AGG 0.513011 3_4:-72450108 Msa0520060:CDS
ATAGATTTGATTGACGAAGC+TGG 0.513521 3_4:-72447104 Msa0520060:CDS
CTGAATAGGCTGGAGAGCTA+CGG 0.514789 3_4:-72446605 Msa0520060:intron
CTTATAATGACATCAAATGT+TGG 0.515383 3_4:-72446369 Msa0520060:CDS
AGAGGTCTGGCACCATAACT+AGG 0.516524 3_4:+72446078 None:intergenic
AAAGAGGGTGACTCTTATAG+TGG 0.516785 3_4:-72445991 Msa0520060:three_prime_UTR
GAAGCCTTGAAGGATGGTGC+AGG 0.519254 3_4:+72445654 None:intergenic
AATAGAGCAAGGAGTGGTAG+AGG 0.521324 3_4:-72449944 Msa0520060:CDS
TGTATGGTTTCACTCACAGT+TGG 0.521619 3_4:+72447600 None:intergenic
TATGCTATCGTTTACCAAGT+TGG 0.522068 3_4:+72449612 None:intergenic
TCACATTTATGTGTTGCCTA+AGG 0.524347 3_4:-72445728 Msa0520060:three_prime_UTR
GATGGATTACTGACTACCTT+AGG 0.524643 3_4:+72445712 None:intergenic
TACAACATATTGTTGCCGCC+TGG 0.526555 3_4:-72446467 Msa0520060:CDS
CATGCCTTCGACCAGCCACT+AGG 0.526998 3_4:+72450104 None:intergenic
CCACAACACTAGATGAATAC+AGG 0.528109 3_4:-72447683 Msa0520060:CDS
GCTAAGGTTCTAAAGTCTAT+GGG 0.528708 3_4:-72449764 Msa0520060:CDS
AAACCATACAAATATTGAAA+GGG 0.529564 3_4:-72447587 Msa0520060:CDS
TCGTGATCAAGAATTTGAAA+AGG 0.533145 3_4:-72446890 Msa0520060:intron
TAGCAAGATGCCAACTTTGG+AGG 0.533394 3_4:-72449018 Msa0520060:CDS
GGTGGTGACAATGTTGGTGC+TGG 0.533702 3_4:-72449050 Msa0520060:CDS
AAATAATCCTTGTCTTATTG+GGG 0.534007 3_4:-72448777 Msa0520060:CDS
GTGCACACTCTCATTGGAGC+AGG 0.534139 3_4:-72448195 Msa0520060:CDS
ATTCGCATGGTTGGTGAGGG+TGG 0.535578 3_4:-72449068 Msa0520060:CDS
CTCGAAGAAGACCCAAAAGC+AGG 0.536165 3_4:+72449269 None:intergenic
TCTTGCTAGAGGTGAACTAC+AGG 0.537146 3_4:-72448127 Msa0520060:intron
ATAGCTGTCTTTCCGACACC+AGG 0.539131 3_4:+72448752 None:intergenic
TTGGAGGAAGCTCGCCAACT+TGG 0.541008 3_4:-72449626 Msa0520060:intron
TGAGAACATAATACTAGCCT+GGG 0.541722 3_4:+72449183 None:intergenic
TTCGACCAGCCACTAGGCCG+GGG 0.543761 3_4:+72450110 None:intergenic
GTTATTCGCATGGTTGGTGA+GGG 0.544259 3_4:-72449071 Msa0520060:CDS
AGGCACTGGTATTGGTGCTA+AGG 0.546348 3_4:-72449780 Msa0520060:CDS
CAATCTAAGAATCATGTCTA+GGG 0.549169 3_4:-72450155 Msa0520060:CDS
TCCAGCCTATTCAAGAACTC+TGG 0.552565 3_4:+72446255 None:intergenic
GTATCCCTGTTGATAAAGAT+GGG 0.554032 3_4:-72446440 Msa0520060:CDS
AGCAGCTACAAGAGCATCAT+CGG 0.556339 3_4:+72447524 None:intergenic
AGTTCACCTCTAGCAAGAGC+TGG 0.557640 3_4:+72448132 None:intergenic
GCTGAGGTTGAAGTCGAACT+CGG 0.557662 3_4:+72447078 None:intergenic
GGTTATTCGCATGGTTGGTG+AGG 0.559144 3_4:-72449072 Msa0520060:CDS
GATGAGCAAGGCAGAGAGTG+AGG 0.564477 3_4:-72446526 Msa0520060:CDS
GAACAGGTTATTCGCATGGT+TGG 0.565225 3_4:-72449077 Msa0520060:CDS
GATTAACGTCCCCGGCCTAG+TGG 0.565737 3_4:-72450119 Msa0520060:CDS
TGCTTGATTTCACTATTATG+TGG 0.565785 3_4:-72445526 Msa0520060:three_prime_UTR
TAACCTGAAAGACGCTCGCG+TGG 0.566475 3_4:-72449738 Msa0520060:CDS
ATTGGAGCAGGAGCAGCTGA+AGG 0.568096 3_4:-72448183 Msa0520060:CDS
TGAAACCATAGAGGGAAAGC+AGG 0.568538 3_4:-72448687 Msa0520060:intron
TTATAACCGAATCAAAAGCT+TGG 0.568690 3_4:-72446307 Msa0520060:CDS
GGTGAGGGTGGTGACAATGT+TGG 0.569316 3_4:-72449056 Msa0520060:CDS
AACAAGTAGACCCATATCTA+GGG 0.569692 3_4:+72448314 None:intergenic
TGCTGGCTCAAGAGGAAGCT+AGG 0.570017 3_4:-72449859 Msa0520060:CDS
ATGTACTCAATCTAGAGGAA+TGG 0.570087 3_4:+72445615 None:intergenic
TGAGAGACTAAATTACATCA+AGG 0.570162 3_4:+72445387 None:intergenic
CATCGGTATAACGGAGCTTG+TGG 0.572339 3_4:+72447541 None:intergenic
GACAATGCATAAAATATGCA+AGG 0.573559 3_4:-72450346 Msa0520060:five_prime_UTR
TTGGAGCAGGAGCAGCTGAA+GGG 0.573814 3_4:-72448182 Msa0520060:CDS
ACTTCAACCTCAGCATGCGC+AGG 0.575926 3_4:-72447069 Msa0520060:intron
GAAACCATACAAATATTGAA+AGG 0.576154 3_4:-72447588 Msa0520060:CDS
CCTGTATTCATCTAGTGTTG+TGG 0.576745 3_4:+72447683 None:intergenic
TTGCTGAAGGTCTCGCCCAA+CGG 0.577227 3_4:-72448730 Msa0520060:CDS
AGAGAGATTTAGGGAGAGAG+TGG 0.578335 3_4:-72446118 Msa0520060:three_prime_UTR
GCTTGCTAGAGAGATTAAAG+AGG 0.579607 3_4:-72446007 Msa0520060:three_prime_UTR
CTGAGGTTGAAGTCGAACTC+GGG 0.579627 3_4:+72447079 None:intergenic
TTTGAGCCTTCATAAATAGT+GGG 0.582680 3_4:-72450403 Msa0520060:five_prime_UTR
AGGGGAACAGGTTATTCGCA+TGG 0.584587 3_4:-72449081 Msa0520060:CDS
CTTATTGGGGAACCTGGTGT+CGG 0.589543 3_4:-72448764 Msa0520060:CDS
TTGTTGGGTATTATTGGCGA+AGG 0.590888 3_4:-72449800 Msa0520060:CDS
AACAATACCTGCGCATGCTG+AGG 0.594236 3_4:+72447062 None:intergenic
GGAAATGTGATTGTGCTCAA+TGG 0.597832 3_4:-72445954 Msa0520060:three_prime_UTR
ATAGAATCCAAAGAGTTCAC+AGG 0.598012 3_4:+72450019 None:intergenic
TGGAGCAGGAGCAGCTGAAG+GGG 0.598733 3_4:-72448181 Msa0520060:CDS
AGTCGAAAAGATAATTGGAA+GGG 0.599788 3_4:-72449714 Msa0520060:CDS
AAGCCTTGAAGGATGGTGCA+GGG 0.601232 3_4:+72445655 None:intergenic
GTCGAAAAGATAATTGGAAG+GGG 0.602318 3_4:-72449713 Msa0520060:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 3_4:-72448982 Msa0520060:intron
GCACAGTCGATTAACGTCCC+CGG 0.608320 3_4:-72450127 Msa0520060:CDS
TGATGTCCCTGAAACCATAG+AGG 0.608411 3_4:-72448696 Msa0520060:CDS
CAGTTACCTGAAGAAGCAAG+AGG 0.610322 3_4:-72446961 Msa0520060:CDS
TCTTGTTGGAGGTGTTGTGG+AGG 0.611193 3_4:+72445558 None:intergenic
CAGGCAACTTACAAAACTGG+AGG 0.611432 3_4:-72446217 Msa0520060:CDS
AACAAGTACACAATATTACA+CGG 0.613426 3_4:+72445893 None:intergenic
GTGGTTGAAGCCTTGAAGGA+TGG 0.614343 3_4:+72445648 None:intergenic
ATCCAGAGAAACCAGACAGT+CGG 0.614877 3_4:+72450047 None:intergenic
TTGAAACCAGCTCTTGCTAG+AGG 0.615304 3_4:-72448138 Msa0520060:CDS
GGAAAGACAGCTATTGCTGA+AGG 0.616017 3_4:-72448743 Msa0520060:CDS
AGCTGAAGGGGTAATTGATG+CGG 0.616566 3_4:-72448169 Msa0520060:CDS
CCAACTGAGCTAAGCTCACG+AGG 0.617839 3_4:+72450373 None:intergenic
TGACCTTGACTATTATGAGA+AGG 0.619514 3_4:-72446337 Msa0520060:CDS
TCTTCGAGAGGGTGAAAGTG+TGG 0.619707 3_4:-72449254 Msa0520060:CDS
ATAGTGGATGCTGATTCTGA+TGG 0.623049 3_4:-72445975 Msa0520060:three_prime_UTR
CATACACTGACTCTTGTTGG+AGG 0.623959 3_4:+72445547 None:intergenic
CTTGCTAGAGAGATTAAAGA+GGG 0.623990 3_4:-72446006 Msa0520060:three_prime_UTR
AATTGGATCCTGTTGTGGGT+AGG 0.625477 3_4:-72448847 Msa0520060:CDS
ATTGTGCTCAATGGTAGTAG+TGG 0.625985 3_4:-72445945 Msa0520060:three_prime_UTR
TGTCCTTCTCATAATAGTCA+AGG 0.627567 3_4:+72446334 None:intergenic
GCCTCCCATCTTTATCAACA+GGG 0.629213 3_4:+72446436 None:intergenic
TCGGATTGTAGCAGTTTGTG+TGG 0.629691 3_4:+72450066 None:intergenic
TGTGTATGTACTCAATCTAG+AGG 0.630520 3_4:+72445610 None:intergenic
AATCAAAAGCTTGGTGACTG+AGG 0.633885 3_4:-72446298 Msa0520060:CDS
AGCTGATATAATGCTTAAGG+AGG 0.638939 3_4:-72446184 Msa0520060:three_prime_UTR
AAGTCGAAAAGATAATTGGA+AGG 0.642076 3_4:-72449715 Msa0520060:CDS
CCAGGTTCCCCAATAAGACA+AGG 0.651573 3_4:+72448770 None:intergenic
AGCCTTGAAGGATGGTGCAG+GGG 0.654393 3_4:+72445656 None:intergenic
TCCCTGTTGATAAAGATGGG+AGG 0.655691 3_4:-72446437 Msa0520060:CDS
GTTACTGGAACTAAATATCG+TGG 0.657316 3_4:-72448294 Msa0520060:CDS
CATAAAATATGCAAGGTCCG+GGG 0.657923 3_4:-72450339 Msa0520060:five_prime_UTR
ACAAGTACACAATATTACAC+GGG 0.664309 3_4:+72445894 None:intergenic
CAATTTGACCAAGCTAGCAG+AGG 0.667069 3_4:-72448985 Msa0520060:CDS
AGTTACCTGAAGAAGCAAGA+GGG 0.668664 3_4:-72446960 Msa0520060:CDS
TCCAACTAATATTCGCACCC+AGG 0.669218 3_4:-72449200 Msa0520060:CDS
AGATTGGTACTAATAGAGCA+AGG 0.671230 3_4:-72449955 Msa0520060:CDS
GATGTCCCTGAAACCATAGA+GGG 0.678856 3_4:-72448695 Msa0520060:CDS
AACAGGGATACCAGTCCAGG+CGG 0.697211 3_4:+72446452 None:intergenic
GGTACTAATAGAGCAAGGAG+TGG 0.707089 3_4:-72449950 Msa0520060:CDS
TGGCTCAAGAGGAAGCTAGG+CGG 0.788911 3_4:-72449856 Msa0520060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAAATATACGTAAA+AGG + chr3_4:72446735-72446754 None:intergenic 10.0%
!! AAAAAATTAAAAATTCTGAA+TGG - chr3_4:72448058-72448077 Msa0520060:intron 10.0%
!! ATGATTTAAATTGAGAAATT+TGG - chr3_4:72445406-72445425 Msa0520060:three_prime_UTR 15.0%
!! TGAATGTATTTAATTCAAAT+TGG + chr3_4:72446437-72446456 None:intergenic 15.0%
!!! TATTTTCTTGACATAAAAAA+TGG - chr3_4:72447785-72447804 Msa0520060:intron 15.0%
!! AAATTTATTTACTTAAGAGA+TGG + chr3_4:72448159-72448178 None:intergenic 15.0%
!!! TAATTTTCTTTTAATAGTTC+TGG - chr3_4:72448484-72448503 Msa0520060:intron 15.0%
!! TAAAAAATCTTTGTAATGTT+GGG + chr3_4:72450118-72450137 None:intergenic 15.0%
!! AATAAAAATAGATAGATAGA+TGG + chr3_4:72450195-72450214 None:intergenic 15.0%
!!! TAAACAAGATTTTCATTCTA+AGG - chr3_4:72445899-72445918 Msa0520060:three_prime_UTR 20.0%
!! ATATGAAAAACGACATATAA+AGG + chr3_4:72446300-72446319 None:intergenic 20.0%
!!! AATAAGACAAGGATTATTTT+TGG + chr3_4:72447108-72447127 None:intergenic 20.0%
!! AAAAATAATCCTTGTCTTAT+TGG - chr3_4:72447107-72447126 Msa0520060:CDS 20.0%
!!! AAAATAATCCTTGTCTTATT+GGG - chr3_4:72447108-72447127 Msa0520060:CDS 20.0%
!! AATGTAGTATTAGAAGTAAA+TGG + chr3_4:72447359-72447378 None:intergenic 20.0%
!!! TGGAATTTTAGCATATTTTT+TGG - chr3_4:72447509-72447528 Msa0520060:CDS 20.0%
!! TTTAAACTTCAGCAAATATA+TGG + chr3_4:72447917-72447936 None:intergenic 20.0%
!!! GAAGTTTAAATAATTAGCTT+TGG - chr3_4:72447927-72447946 Msa0520060:intron 20.0%
!! AAAAAATGAACAGTTGAAAA+TGG + chr3_4:72448026-72448045 None:intergenic 20.0%
!! AAACCATACAAATATTGAAA+GGG - chr3_4:72448299-72448318 Msa0520060:CDS 20.0%
!! CATAAATCAAAATTGAAATG+AGG + chr3_4:72448447-72448466 None:intergenic 20.0%
!!! TTCAATTTTGATTTATGCTA+TGG - chr3_4:72448450-72448469 Msa0520060:intron 20.0%
!!! AAATTTTGTAAGCAATTCAA+AGG + chr3_4:72448630-72448649 None:intergenic 20.0%
!! TTATTATTAAGATAAACAGC+AGG + chr3_4:72448722-72448741 None:intergenic 20.0%
!! ACATGCTAAATCTTAAATTA+TGG + chr3_4:72449027-72449046 None:intergenic 20.0%
!!! TAACATTAACCAACATTTTT+AGG - chr3_4:72449048-72449067 Msa0520060:CDS 20.0%
!! AAAATATTATGTAATCTCGT+AGG + chr3_4:72449093-72449112 None:intergenic 20.0%
!! AAACAAAAGTAAGCTAATTA+AGG - chr3_4:72449116-72449135 Msa0520060:intron 20.0%
!! CTAAAAAATCTTTGTAATGT+TGG + chr3_4:72450119-72450138 None:intergenic 20.0%
! GAATGCAATACAAAACTATA+AGG + chr3_4:72445447-72445466 None:intergenic 25.0%
!!! ACTATTTTTTTTTTTGGTGG+TGG + chr3_4:72445584-72445603 None:intergenic 25.0%
! ACCACCAAAAAAAAAAATAG+TGG - chr3_4:72445583-72445602 Msa0520060:three_prime_UTR 25.0%
! CCACCAAAAAAAAAAATAGT+GGG - chr3_4:72445584-72445603 Msa0520060:three_prime_UTR 25.0%
!!! CTTCCCACTATTTTTTTTTT+TGG + chr3_4:72445590-72445609 None:intergenic 25.0%
!! AGCCATATTTTATCATTTCA+CGG - chr3_4:72445983-72446002 Msa0520060:three_prime_UTR 25.0%
! TTCCGTGAAATGATAAAATA+TGG + chr3_4:72445988-72446007 None:intergenic 25.0%
!! CAAATTTTGTTGGGTATTAT+TGG - chr3_4:72446080-72446099 Msa0520060:three_prime_UTR 25.0%
! GTGAGTTTAAATTGAATTGT+TGG - chr3_4:72446459-72446478 Msa0520060:CDS 25.0%
!! TGAAATTTTGCCTTACATTT+TGG - chr3_4:72446560-72446579 Msa0520060:CDS 25.0%
! TTTCTAGGTCACAATTATAT+TGG - chr3_4:72446585-72446604 Msa0520060:CDS 25.0%
! AATCTGTCATTAAGAAAACT+AGG + chr3_4:72446941-72446960 None:intergenic 25.0%
!! AAATAATCCTTGTCTTATTG+GGG - chr3_4:72447109-72447128 Msa0520060:CDS 25.0%
! TTTGTAGACTAGAAATAGAA+AGG + chr3_4:72447239-72447258 None:intergenic 25.0%
!!! TTCTAATACTACATTTTGAC+TGG - chr3_4:72447364-72447383 Msa0520060:intron 25.0%
! CAATCATATGACTAAATACA+AGG + chr3_4:72447440-72447459 None:intergenic 25.0%
!!! TTGTTTTGAGTTTCTGTATT+GGG - chr3_4:72447465-72447484 Msa0520060:intron 25.0%
!!! CTGTTTTAAGTTCTTAGATA+TGG - chr3_4:72447489-72447508 Msa0520060:intron 25.0%
! GGAGAGATTAAAAAAACTAA+TGG - chr3_4:72447624-72447643 Msa0520060:CDS 25.0%
! GAGATTAAAAAAACTAATGG+AGG - chr3_4:72447627-72447646 Msa0520060:CDS 25.0%
! TAAATACTTATGCAGTGTAT+AGG - chr3_4:72448178-72448197 Msa0520060:CDS 25.0%
! GAAACCATACAAATATTGAA+AGG - chr3_4:72448298-72448317 Msa0520060:CDS 25.0%
!! AAATTCCAAAAGATTGACTT+TGG + chr3_4:72448598-72448617 None:intergenic 25.0%
! ATCAAGAATTTGAAAAGGTA+AGG - chr3_4:72449001-72449020 Msa0520060:CDS 25.0%
!!! CTCCAAATTCTTTTACTTTT+TGG - chr3_4:72449225-72449244 Msa0520060:CDS 25.0%
! AGCCAAAAAGTAAAAGAATT+TGG + chr3_4:72449230-72449249 None:intergenic 25.0%
!!! ACTTTTTGGCTAATAATTAG+CGG - chr3_4:72449239-72449258 Msa0520060:CDS 25.0%
! AGCACTTATACAAAAAAACA+AGG - chr3_4:72449336-72449355 Msa0520060:intron 25.0%
! CTTATAATGACATCAAATGT+TGG - chr3_4:72449517-72449536 Msa0520060:intron 25.0%
! AACAAGTACACAATATTACA+CGG + chr3_4:72449996-72450015 None:intergenic 25.0%
! ATTTGACTATTGTTAGTGAT+AGG - chr3_4:72450061-72450080 Msa0520060:CDS 25.0%
!!! TACAAAGATTTTTTAGTGCT+AGG - chr3_4:72450123-72450142 Msa0520060:CDS 25.0%
TTTGAGCCTTCATAAATAGT+GGG - chr3_4:72445483-72445502 Msa0520060:three_prime_UTR 30.0%
GACAATGCATAAAATATGCA+AGG - chr3_4:72445540-72445559 Msa0520060:three_prime_UTR 30.0%
!!! CCCACTATTTTTTTTTTTGG+TGG + chr3_4:72445587-72445606 None:intergenic 30.0%
ACAATCTAAGAATCATGTCT+AGG - chr3_4:72445730-72445749 Msa0520060:three_prime_UTR 30.0%
CAATCTAAGAATCATGTCTA+GGG - chr3_4:72445731-72445750 Msa0520060:three_prime_UTR 30.0%
ACCAATCAAAGTTATTATGC+TGG - chr3_4:72446010-72446029 Msa0520060:three_prime_UTR 30.0%
! GGAACAGAACAAATTTTGTT+GGG - chr3_4:72446071-72446090 Msa0520060:three_prime_UTR 30.0%
AAGTCGAAAAGATAATTGGA+AGG - chr3_4:72446171-72446190 Msa0520060:three_prime_UTR 30.0%
AGTCGAAAAGATAATTGGAA+GGG - chr3_4:72446172-72446191 Msa0520060:three_prime_UTR 30.0%
TCATAGCAACAATCAAATCA+AGG + chr3_4:72446398-72446417 None:intergenic 30.0%
AAATAAAAGAAAGAGCGGAA+AGG + chr3_4:72446503-72446522 None:intergenic 30.0%
! TTTCCGCTCTTTCTTTTATT+TGG - chr3_4:72446502-72446521 Msa0520060:CDS 30.0%
ACTCCAAATAAAAGAAAGAG+CGG + chr3_4:72446508-72446527 None:intergenic 30.0%
CCTAGAAATTCCAAAATGTA+AGG + chr3_4:72446573-72446592 None:intergenic 30.0%
!!! CCTTACATTTTGGAATTTCT+AGG - chr3_4:72446570-72446589 Msa0520060:CDS 30.0%
!! TCCTCTAAAATCAAAATCCT+AGG - chr3_4:72447013-72447032 Msa0520060:intron 30.0%
!! CCTCTAAAATCAAAATCCTA+GGG - chr3_4:72447014-72447033 Msa0520060:intron 30.0%
ATCAAAATCCTAGGGAAAAT+TGG - chr3_4:72447022-72447041 Msa0520060:intron 30.0%
TCTAGTCTACAAATTGTTGT+TGG - chr3_4:72447246-72447265 Msa0520060:intron 30.0%
! TCTACAAATTGTTGTTGGTT+TGG - chr3_4:72447251-72447270 Msa0520060:intron 30.0%
ATATGACTAAATACAAGGCA+AGG + chr3_4:72447435-72447454 None:intergenic 30.0%
!!! GTTGTTTTGAGTTTCTGTAT+TGG - chr3_4:72447464-72447483 Msa0520060:intron 30.0%
TTAGGTTATAACCCTAGATA+TGG - chr3_4:72447561-72447580 Msa0520060:CDS 30.0%
TAGGTTATAACCCTAGATAT+GGG - chr3_4:72447562-72447581 Msa0520060:CDS 30.0%
TAAATATCGTGGAGAATTTG+AGG - chr3_4:72447603-72447622 Msa0520060:CDS 30.0%
!!! AGTATTTGACTTTTGACTTG+CGG - chr3_4:72447883-72447902 Msa0520060:intron 30.0%
AAAATTCTGAATGGTCACTT+TGG - chr3_4:72448067-72448086 Msa0520060:intron 30.0%
GAAGACTGAAGACATATATA+TGG - chr3_4:72448106-72448125 Msa0520060:intron 30.0%
AAGCCCTTTCAATATTTGTA+TGG + chr3_4:72448305-72448324 None:intergenic 30.0%
AGCTATCACATCAATATATC+AGG - chr3_4:72448389-72448408 Msa0520060:intron 30.0%
TCTGGTATTGCATGTTTAAA+TGG - chr3_4:72448561-72448580 Msa0520060:intron 30.0%
CTGGTATTGCATGTTTAAAT+GGG - chr3_4:72448562-72448581 Msa0520060:intron 30.0%
! TTTGACCAAAGTCAATCTTT+TGG - chr3_4:72448590-72448609 Msa0520060:intron 30.0%
TTATTAAGATAAACAGCAGG+TGG + chr3_4:72448719-72448738 None:intergenic 30.0%
!! ATCAAATCTATAGCTTTGTC+AGG + chr3_4:72448773-72448792 None:intergenic 30.0%
TCGTGATCAAGAATTTGAAA+AGG - chr3_4:72448996-72449015 Msa0520060:CDS 30.0%
GCTAAGTATCCTAAAAATGT+TGG + chr3_4:72449060-72449079 None:intergenic 30.0%
ATGTAATCTCGTAGGAAAAA+AGG + chr3_4:72449085-72449104 None:intergenic 30.0%
TTTGTTTGAAGACATTGTAG+TGG - chr3_4:72449181-72449200 Msa0520060:intron 30.0%
!!! CTTTTTGGCTAATAATTAGC+GGG - chr3_4:72449240-72449259 Msa0520060:CDS 30.0%
TGGTACCTTAATTTCTGAAT+AGG - chr3_4:72449267-72449286 Msa0520060:CDS 30.0%
GGATATAGAAATGGATCTTA+AGG - chr3_4:72449303-72449322 Msa0520060:intron 30.0%
TTATAACCGAATCAAAAGCT+TGG - chr3_4:72449579-72449598 Msa0520060:intron 30.0%
! TGGATGAAATGATTGTTTTC+AGG - chr3_4:72449650-72449669 Msa0520060:CDS 30.0%
GATAGCTGATATAATGCTTA+AGG - chr3_4:72449699-72449718 Msa0520060:CDS 30.0%
GAAGGTTATAATCCTAGTTA+TGG - chr3_4:72449796-72449815 Msa0520060:CDS 30.0%
ACAAGTACACAATATTACAC+GGG + chr3_4:72449995-72450014 None:intergenic 30.0%
CATAACAACTAAACAGACTA+TGG + chr3_4:72450026-72450045 None:intergenic 30.0%
! GATGATACTTTTCTGCAATT+TGG + chr3_4:72450309-72450328 None:intergenic 30.0%
TGCTTGATTTCACTATTATG+TGG - chr3_4:72450360-72450379 Msa0520060:five_prime_UTR 30.0%
CTTTGAGCCTTCATAAATAG+TGG - chr3_4:72445482-72445501 Msa0520060:three_prime_UTR 35.0%
CAACTTCCCACTATTTATGA+AGG + chr3_4:72445492-72445511 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr3_4:72445545-72445564 Msa0520060:three_prime_UTR 35.0%
!!! TTTTTTTTTTTGGTGGTGGC+CGG + chr3_4:72445580-72445599 None:intergenic 35.0%
!! AAGAATCATGTCTAGGGTTT+TGG - chr3_4:72445737-72445756 Msa0520060:three_prime_UTR 35.0%
ATTACATCCTGTGAACTCTT+TGG - chr3_4:72445860-72445879 Msa0520060:three_prime_UTR 35.0%
ATAGAATCCAAAGAGTTCAC+AGG + chr3_4:72445870-72445889 None:intergenic 35.0%
AGATTGGTACTAATAGAGCA+AGG - chr3_4:72445931-72445950 Msa0520060:three_prime_UTR 35.0%
GCCAGCATAATAACTTTGAT+TGG + chr3_4:72446014-72446033 None:intergenic 35.0%
! CGGAACAGAACAAATTTTGT+TGG - chr3_4:72446070-72446089 Msa0520060:three_prime_UTR 35.0%
!! TGCTAAGGTTCTAAAGTCTA+TGG - chr3_4:72446121-72446140 Msa0520060:three_prime_UTR 35.0%
!! GCTAAGGTTCTAAAGTCTAT+GGG - chr3_4:72446122-72446141 Msa0520060:three_prime_UTR 35.0%
GTGGAAGTCGAAAAGATAAT+TGG - chr3_4:72446167-72446186 Msa0520060:three_prime_UTR 35.0%
GTCGAAAAGATAATTGGAAG+GGG - chr3_4:72446173-72446192 Msa0520060:three_prime_UTR 35.0%
TGAGAGTTCAAAAACTCTCT+TGG + chr3_4:72446240-72446259 None:intergenic 35.0%
! GAGAGTTTTTGAACTCTCAT+TGG - chr3_4:72446241-72446260 Msa0520060:CDS 35.0%
! AGTTTTTGAACTCTCATTGG+AGG - chr3_4:72446244-72446263 Msa0520060:CDS 35.0%
TATGCTATCGTTTACCAAGT+TGG + chr3_4:72446277-72446296 None:intergenic 35.0%
TGTTGCTATGATTGATCTGA+TGG - chr3_4:72446407-72446426 Msa0520060:CDS 35.0%
CAAAATTTCAGCAAGCGTAA+AGG + chr3_4:72446550-72446569 None:intergenic 35.0%
AGCACGTGTTCTTGAAAATT+TGG - chr3_4:72446656-72446675 Msa0520060:intron 35.0%
GCACGTGTTCTTGAAAATTT+GGG - chr3_4:72446657-72446676 Msa0520060:intron 35.0%
! TGAGAACATAATACTAGCCT+GGG + chr3_4:72446706-72446725 None:intergenic 35.0%
ATGAGAACATAATACTAGCC+TGG + chr3_4:72446707-72446726 None:intergenic 35.0%
TAATAGCAAGATGCCAACTT+TGG - chr3_4:72446865-72446884 Msa0520060:intron 35.0%
!!! CCCTAGGATTTTGATTTTAG+AGG + chr3_4:72447017-72447036 None:intergenic 35.0%
TGAGTAACACGTTCAATTTG+TGG + chr3_4:72447068-72447087 None:intergenic 35.0%
! TGAACGTGTTACTCAAATCT+TGG - chr3_4:72447073-72447092 Msa0520060:CDS 35.0%
! GAACGTGTTACTCAAATCTT+GGG - chr3_4:72447074-72447093 Msa0520060:CDS 35.0%
!! AATTGTTGTTGGTTTGGTTC+AGG - chr3_4:72447257-72447276 Msa0520060:intron 35.0%
!! ATTGTTGTTGGTTTGGTTCA+GGG - chr3_4:72447258-72447277 Msa0520060:intron 35.0%
GAGCAACTTGAACATGTTAA+CGG + chr3_4:72447307-72447326 None:intergenic 35.0%
GTAACTTTCTTGCATCAAGA+TGG - chr3_4:72447390-72447409 Msa0520060:intron 35.0%
AACCTAAATCATGCAGAATG+AGG + chr3_4:72447548-72447567 None:intergenic 35.0%
AACAAGTAGACCCATATCTA+GGG + chr3_4:72447575-72447594 None:intergenic 35.0%
TAACAAGTAGACCCATATCT+AGG + chr3_4:72447576-72447595 None:intergenic 35.0%
GTTACTGGAACTAAATATCG+TGG - chr3_4:72447592-72447611 Msa0520060:CDS 35.0%
! ACGCGACATTTTACATAGTA+CGG - chr3_4:72447810-72447829 Msa0520060:intron 35.0%
!! ACTTCAGTGACTTTGAGTTT+TGG + chr3_4:72447998-72448017 None:intergenic 35.0%
TACTTAAGAGATGGAAGTTG+TGG + chr3_4:72448150-72448169 None:intergenic 35.0%
CATTGAAAAAGATCCAGCTT+TGG - chr3_4:72448231-72448250 Msa0520060:CDS 35.0%
! TGGTTATTGTTGTTGTTGTC+TGG - chr3_4:72448543-72448562 Msa0520060:intron 35.0%
GTGGAAAACAACAAGATACA+GGG + chr3_4:72448700-72448719 None:intergenic 35.0%
ATAGATTTGATTGACGAAGC+TGG - chr3_4:72448782-72448801 Msa0520060:CDS 35.0%
TATTGTTGAGCTAATTGAGC+TGG - chr3_4:72448889-72448908 Msa0520060:intron 35.0%
AGAGGTTAGACAGATAGTTA+AGG - chr3_4:72448957-72448976 Msa0520060:intron 35.0%
TAATCTCGTAGGAAAAAAGG+TGG + chr3_4:72449082-72449101 None:intergenic 35.0%
ACCTTAATTTCTGAATAGGC+TGG - chr3_4:72449271-72449290 Msa0520060:CDS 35.0%
TCCAGCCTATTCAGAAATTA+AGG + chr3_4:72449275-72449294 None:intergenic 35.0%
AAAAAACAAGGAGATGAGCA+AGG - chr3_4:72449348-72449367 Msa0520060:intron 35.0%
! GTATCCCTGTTGATAAAGAT+GGG - chr3_4:72449446-72449465 Msa0520060:intron 35.0%
TGACCTTGACTATTATGAGA+AGG - chr3_4:72449549-72449568 Msa0520060:intron 35.0%
TGTCCTTCTCATAATAGTCA+AGG + chr3_4:72449555-72449574 None:intergenic 35.0%
TTTCAGGCAACTTACAAAAC+TGG - chr3_4:72449666-72449685 Msa0520060:CDS 35.0%
AGCTGATATAATGCTTAAGG+AGG - chr3_4:72449702-72449721 Msa0520060:CDS 35.0%
TTTCAGTGACAGAGAGATTT+AGG - chr3_4:72449758-72449777 Msa0520060:CDS 35.0%
TTCAGTGACAGAGAGATTTA+GGG - chr3_4:72449759-72449778 Msa0520060:CDS 35.0%
! AAGAGCTATAATGCGACTTT+TGG - chr3_4:72449834-72449853 Msa0520060:CDS 35.0%
!!! ATTTTTTAGTGCTAGGCGTT+TGG - chr3_4:72450130-72450149 Msa0520060:CDS 35.0%
TCACATTTATGTGTTGCCTA+AGG - chr3_4:72450158-72450177 Msa0520060:CDS 35.0%
! CTAGAGGAATGGATCATTTT+AGG + chr3_4:72450263-72450282 None:intergenic 35.0%
ATGTACTCAATCTAGAGGAA+TGG + chr3_4:72450274-72450293 None:intergenic 35.0%
TGTGTATGTACTCAATCTAG+AGG + chr3_4:72450279-72450298 None:intergenic 35.0%
! ACTTTTCTGCAATTTGGTCA+GGG + chr3_4:72450303-72450322 None:intergenic 35.0%
! TACTTTTCTGCAATTTGGTC+AGG + chr3_4:72450304-72450323 None:intergenic 35.0%
GCATAAAATATGCAAGGTCC+GGG - chr3_4:72445546-72445565 Msa0520060:three_prime_UTR 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr3_4:72445547-72445566 Msa0520060:three_prime_UTR 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG + chr3_4:72445579-72445598 None:intergenic 40.0%
!! AGTTATTATGCTGGCTCAAG+AGG - chr3_4:72446019-72446038 Msa0520060:three_prime_UTR 40.0%
TTGTTGGGTATTATTGGCGA+AGG - chr3_4:72446086-72446105 Msa0520060:three_prime_UTR 40.0%
AAGATAATTGGAAGGGGTAG+TGG - chr3_4:72446179-72446198 Msa0520060:three_prime_UTR 40.0%
CAATCAAATCAAGGCACGTT+TGG + chr3_4:72446389-72446408 None:intergenic 40.0%
TAAAAGAAAGAGCGGAAAGG+CGG + chr3_4:72446500-72446519 None:intergenic 40.0%
! ATGCCAACTTTGGAGGAATA+TGG - chr3_4:72446875-72446894 Msa0520060:intron 40.0%
! AACAGGATCCAATTTTCCCT+AGG + chr3_4:72447033-72447052 None:intergenic 40.0%
GGAAAATTGGATCCTGTTGT+GGG - chr3_4:72447035-72447054 Msa0520060:intron 40.0%
ATCACCATTTGCAATCCGTT+GGG + chr3_4:72447174-72447193 None:intergenic 40.0%
!! TTGGTTTGGTTCAGGGTATT+TGG - chr3_4:72447265-72447284 Msa0520060:intron 40.0%
AGCCTCATTCTGCATGATTT+AGG - chr3_4:72447543-72447562 Msa0520060:CDS 40.0%
! GATATGGGTCTACTTGTTAC+TGG - chr3_4:72447577-72447596 Msa0520060:CDS 40.0%
! TCTGAATGGTCACTTTGGAT+TGG - chr3_4:72448072-72448091 Msa0520060:intron 40.0%
CCTGTATTCATCTAGTGTTG+TGG + chr3_4:72448206-72448225 None:intergenic 40.0%
CCACAACACTAGATGAATAC+AGG - chr3_4:72448203-72448222 Msa0520060:CDS 40.0%
!! AAAAAGATCCAGCTTTGGAG+AGG - chr3_4:72448236-72448255 Msa0520060:CDS 40.0%
TGTATGGTTTCACTCACAGT+TGG + chr3_4:72448289-72448308 None:intergenic 40.0%
!! CAAGAGCATCATCGGTATAA+CGG + chr3_4:72448357-72448376 None:intergenic 40.0%
CATGTTTAACCCCACTTAGT+GGG - chr3_4:72448512-72448531 Msa0520060:intron 40.0%
GGTGGAAAACAACAAGATAC+AGG + chr3_4:72448701-72448720 None:intergenic 40.0%
AGAACTGCTGGTACAGAAAA+TGG + chr3_4:72448860-72448879 None:intergenic 40.0%
AGTTACCTGAAGAAGCAAGA+GGG - chr3_4:72448926-72448945 Msa0520060:intron 40.0%
AGAGCTACGGGATATAGAAA+TGG - chr3_4:72449294-72449313 Msa0520060:CDS 40.0%
! GGTATCCCTGTTGATAAAGA+TGG - chr3_4:72449445-72449464 Msa0520060:intron 40.0%
!! CAGTCACCAAGCTTTTGATT+CGG + chr3_4:72449588-72449607 None:intergenic 40.0%
! AATCAAAAGCTTGGTGACTG+AGG - chr3_4:72449588-72449607 Msa0520060:intron 40.0%
AGGAGCTGAAGCAATACTTT+AGG - chr3_4:72449608-72449627 Msa0520060:intron 40.0%
TTAGGCCAGAGTTCTTGAAT+AGG - chr3_4:72449626-72449645 Msa0520060:intron 40.0%
ACTTACAAAACTGGAGGCTT+AGG - chr3_4:72449675-72449694 Msa0520060:CDS 40.0%
CACTGAAAGCTCAATCTCTT+TGG + chr3_4:72449746-72449765 None:intergenic 40.0%
TATAGCTCTTCTTAGAGGTC+TGG + chr3_4:72449824-72449843 None:intergenic 40.0%
CGCATTATAGCTCTTCTTAG+AGG + chr3_4:72449829-72449848 None:intergenic 40.0%
AAAGAGGGTGACTCTTATAG+TGG - chr3_4:72449895-72449914 Msa0520060:CDS 40.0%
!! ATAGTGGATGCTGATTCTGA+TGG - chr3_4:72449911-72449930 Msa0520060:CDS 40.0%
GGAAATGTGATTGTGCTCAA+TGG - chr3_4:72449932-72449951 Msa0520060:CDS 40.0%
ATTGTGCTCAATGGTAGTAG+TGG - chr3_4:72449941-72449960 Msa0520060:CDS 40.0%
!! GATGGATTACTGACTACCTT+AGG + chr3_4:72450177-72450196 None:intergenic 40.0%
! GAGGAATGGATCATTTTAGG+TGG + chr3_4:72450260-72450279 None:intergenic 40.0%
!! AAGCATACACTGACTCTTGT+TGG + chr3_4:72450345-72450364 None:intergenic 40.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_4:72445518-72445537 Msa0520060:three_prime_UTR 45.0%
TCGGATTGTAGCAGTTTGTG+TGG + chr3_4:72445823-72445842 None:intergenic 45.0%
ATCCAGAGAAACCAGACAGT+CGG + chr3_4:72445842-72445861 None:intergenic 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG - chr3_4:72445915-72445934 Msa0520060:three_prime_UTR 45.0%
GGTACTAATAGAGCAAGGAG+TGG - chr3_4:72445936-72445955 Msa0520060:three_prime_UTR 45.0%
AATAGAGCAAGGAGTGGTAG+AGG - chr3_4:72445942-72445961 Msa0520060:three_prime_UTR 45.0%
TCAAAAACTCTCTTGGCACG+CGG + chr3_4:72446233-72446252 None:intergenic 45.0%
AAAAGAAAGAGCGGAAAGGC+GGG + chr3_4:72446499-72446518 None:intergenic 45.0%
! TGGAACTGAGAACCTGCTTT+TGG - chr3_4:72446605-72446624 Msa0520060:intron 45.0%
!! GGAACTGAGAACCTGCTTTT+GGG - chr3_4:72446606-72446625 Msa0520060:intron 45.0%
!! CTTTTGGGTCTTCTTCGAGA+GGG - chr3_4:72446621-72446640 Msa0520060:intron 45.0%
TCCAACTAATATTCGCACCC+AGG - chr3_4:72446686-72446705 Msa0520060:intron 45.0%
TGTGTTTGTGCTCCACTTGA+GGG - chr3_4:72446786-72446805 Msa0520060:intron 45.0%
AATAACCTGTTCCCCTCAAG+TGG + chr3_4:72446801-72446820 None:intergenic 45.0%
GAACAGGTTATTCGCATGGT+TGG - chr3_4:72446809-72446828 Msa0520060:intron 45.0%
!! GTTATTCGCATGGTTGGTGA+GGG - chr3_4:72446815-72446834 Msa0520060:intron 45.0%
TAGCAAGATGCCAACTTTGG+AGG - chr3_4:72446868-72446887 Msa0520060:intron 45.0%
GTGCCATATTCCTCCAAAGT+TGG + chr3_4:72446881-72446900 None:intergenic 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG + chr3_4:72446903-72446922 None:intergenic 45.0%
CAATTTGACCAAGCTAGCAG+AGG - chr3_4:72446901-72446920 Msa0520060:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG - chr3_4:72447034-72447053 Msa0520060:intron 45.0%
AATTGGATCCTGTTGTGGGT+AGG - chr3_4:72447039-72447058 Msa0520060:intron 45.0%
GGAAAGACAGCTATTGCTGA+AGG - chr3_4:72447143-72447162 Msa0520060:intron 45.0%
CATCACCATTTGCAATCCGT+TGG + chr3_4:72447175-72447194 None:intergenic 45.0%
TGATGTCCCTGAAACCATAG+AGG - chr3_4:72447190-72447209 Msa0520060:intron 45.0%
GATGTCCCTGAAACCATAGA+GGG - chr3_4:72447191-72447210 Msa0520060:intron 45.0%
GCTTTCCCTCTATGGTTTCA+GGG + chr3_4:72447199-72447218 None:intergenic 45.0%
TGCTTTCCCTCTATGGTTTC+AGG + chr3_4:72447200-72447219 None:intergenic 45.0%
TGAAACCATAGAGGGAAAGC+AGG - chr3_4:72447199-72447218 Msa0520060:intron 45.0%
GATGAAGTGCACACTCTCAT+TGG - chr3_4:72447685-72447704 Msa0520060:CDS 45.0%
AGCTGAAGGGGTAATTGATG+CGG - chr3_4:72447717-72447736 Msa0520060:intron 45.0%
TTGAAACCAGCTCTTGCTAG+AGG - chr3_4:72447748-72447767 Msa0520060:intron 45.0%
TCTTGCTAGAGGTGAACTAC+AGG - chr3_4:72447759-72447778 Msa0520060:intron 45.0%
TGGAATTTCCTCTCCAAAGC+TGG + chr3_4:72448247-72448266 None:intergenic 45.0%
!! AGCAGCTACAAGAGCATCAT+CGG + chr3_4:72448365-72448384 None:intergenic 45.0%
GCATGTTTAACCCCACTTAG+TGG - chr3_4:72448511-72448530 Msa0520060:intron 45.0%
TAACCCCACTTAGTGGGAAA+AGG - chr3_4:72448518-72448537 Msa0520060:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG + chr3_4:72448524-72448543 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG + chr3_4:72448525-72448544 None:intergenic 45.0%
ATAGACGAGACAAGAACTGC+TGG + chr3_4:72448872-72448891 None:intergenic 45.0%
CAGTTACCTGAAGAAGCAAG+AGG - chr3_4:72448925-72448944 Msa0520060:intron 45.0%
AGCAAGAGGGCTTGAAAAAG+AGG - chr3_4:72448939-72448958 Msa0520060:intron 45.0%
!! GCTAATAATTAGCGGGCTGA+TGG - chr3_4:72449247-72449266 Msa0520060:CDS 45.0%
TACAACATATTGTTGCCGCC+TGG - chr3_4:72449419-72449438 Msa0520060:intron 45.0%
! TCCCTGTTGATAAAGATGGG+AGG - chr3_4:72449449-72449468 Msa0520060:intron 45.0%
GCCTCCCATCTTTATCAACA+GGG + chr3_4:72449453-72449472 None:intergenic 45.0%
AGCCTCCCATCTTTATCAAC+AGG + chr3_4:72449454-72449473 None:intergenic 45.0%
TGGGAGGCTAACTGATAGTA+AGG - chr3_4:72449465-72449484 Msa0520060:intron 45.0%
TCCAGCCTATTCAAGAACTC+TGG + chr3_4:72449634-72449653 None:intergenic 45.0%
CAGGCAACTTACAAAACTGG+AGG - chr3_4:72449669-72449688 Msa0520060:CDS 45.0%
AGAGAGATTTAGGGAGAGAG+TGG - chr3_4:72449768-72449787 Msa0520060:CDS 45.0%
!! GCGACTTTTGGAAGACATCA+TGG - chr3_4:72449846-72449865 Msa0520060:CDS 45.0%
CTCTCTAGCAAGCATCTTCT+CGG + chr3_4:72449872-72449891 None:intergenic 45.0%
!! TATTACACGGGAAGAGCATC+TGG + chr3_4:72449983-72450002 None:intergenic 45.0%
TTAGGTGGTTGAAGCCTTGA+AGG + chr3_4:72450245-72450264 None:intergenic 45.0%
!! CATACACTGACTCTTGTTGG+AGG + chr3_4:72450342-72450361 None:intergenic 45.0%
ACTGCTACAATCCGACTGTC+TGG - chr3_4:72445828-72445847 Msa0520060:three_prime_UTR 50.0%
! ATCCGACTGTCTGGTTTCTC+TGG - chr3_4:72445837-72445856 Msa0520060:three_prime_UTR 50.0%
! CGGCTGGGACACAATTTTGT+CGG - chr3_4:72446050-72446069 Msa0520060:three_prime_UTR 50.0%
! GGTATTATTGGCGAAGGCAC+TGG - chr3_4:72446092-72446111 Msa0520060:three_prime_UTR 50.0%
!! ATTGGCGAAGGCACTGGTAT+TGG - chr3_4:72446098-72446117 Msa0520060:three_prime_UTR 50.0%
!! AGGCACTGGTATTGGTGCTA+AGG - chr3_4:72446106-72446125 Msa0520060:three_prime_UTR 50.0%
CTCGAAGAAGACCCAAAAGC+AGG + chr3_4:72446620-72446639 None:intergenic 50.0%
!! GCTTTTGGGTCTTCTTCGAG+AGG - chr3_4:72446620-72446639 Msa0520060:intron 50.0%
TCTTCGAGAGGGTGAAAGTG+TGG - chr3_4:72446632-72446651 Msa0520060:intron 50.0%
GCCTGGGTGCGAATATTAGT+TGG + chr3_4:72446690-72446709 None:intergenic 50.0%
GTGTGTTTGTGCTCCACTTG+AGG - chr3_4:72446785-72446804 Msa0520060:intron 50.0%
GTGTTTGTGCTCCACTTGAG+GGG - chr3_4:72446787-72446806 Msa0520060:intron 50.0%
AGGGGAACAGGTTATTCGCA+TGG - chr3_4:72446805-72446824 Msa0520060:intron 50.0%
! GGTTATTCGCATGGTTGGTG+AGG - chr3_4:72446814-72446833 Msa0520060:intron 50.0%
TTTGACCAAGCTAGCAGAGG+AGG - chr3_4:72446904-72446923 Msa0520060:CDS 50.0%
AGTTACCTCCTCTGCTAGCT+TGG + chr3_4:72446912-72446931 None:intergenic 50.0%
CCAGGTTCCCCAATAAGACA+AGG + chr3_4:72447119-72447138 None:intergenic 50.0%
! CCTTGTCTTATTGGGGAACC+TGG - chr3_4:72447116-72447135 Msa0520060:CDS 50.0%
CTTATTGGGGAACCTGGTGT+CGG - chr3_4:72447122-72447141 Msa0520060:CDS 50.0%
ATAGCTGTCTTTCCGACACC+AGG + chr3_4:72447137-72447156 None:intergenic 50.0%
ACCATAGAGGGAAAGCAGGT+TGG - chr3_4:72447203-72447222 Msa0520060:intron 50.0%
ACCAACCTGCTTTCCCTCTA+TGG + chr3_4:72447207-72447226 None:intergenic 50.0%
AGTTCACCTCTAGCAAGAGC+TGG + chr3_4:72447757-72447776 None:intergenic 50.0%
!! GTTGGCTCTGGCACTTTAAC+TGG + chr3_4:72448271-72448290 None:intergenic 50.0%
! GTTTCACTCACAGTTGGCTC+TGG + chr3_4:72448283-72448302 None:intergenic 50.0%
! CATCGGTATAACGGAGCTTG+TGG + chr3_4:72448348-72448367 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + chr3_4:72448526-72448545 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - chr3_4:72448523-72448542 Msa0520060:intron 50.0%
CTGAGGTTGAAGTCGAACTC+GGG + chr3_4:72448810-72448829 None:intergenic 50.0%
GCTGAGGTTGAAGTCGAACT+CGG + chr3_4:72448811-72448830 None:intergenic 50.0%
AACAATACCTGCGCATGCTG+AGG + chr3_4:72448827-72448846 None:intergenic 50.0%
TCAAGCCCTCTTGCTTCTTC+AGG + chr3_4:72448934-72448953 None:intergenic 50.0%
CTGAATAGGCTGGAGAGCTA+CGG - chr3_4:72449281-72449300 Msa0520060:CDS 50.0%
TGAATAGGCTGGAGAGCTAC+GGG - chr3_4:72449282-72449301 Msa0520060:CDS 50.0%
ATCAACAGGGATACCAGTCC+AGG + chr3_4:72449440-72449459 None:intergenic 50.0%
GCCAGAGTTCTTGAATAGGC+TGG - chr3_4:72449630-72449649 Msa0520060:CDS 50.0%
AGAGGTCTGGCACCATAACT+AGG + chr3_4:72449811-72449830 None:intergenic 50.0%
AAGCCTTGAAGGATGGTGCA+GGG + chr3_4:72450234-72450253 None:intergenic 50.0%
GTGGTTGAAGCCTTGAAGGA+TGG + chr3_4:72450241-72450260 None:intergenic 50.0%
!! TCTTGTTGGAGGTGTTGTGG+AGG + chr3_4:72450331-72450350 None:intergenic 50.0%
!! GACTCTTGTTGGAGGTGTTG+TGG + chr3_4:72450334-72450353 None:intergenic 50.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_4:72445516-72445535 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_4:72445513-72445532 Msa0520060:three_prime_UTR 55.0%
GCACAGTCGATTAACGTCCC+CGG - chr3_4:72445759-72445778 Msa0520060:three_prime_UTR 55.0%
!! TGCTGGCTCAAGAGGAAGCT+AGG - chr3_4:72446027-72446046 Msa0520060:three_prime_UTR 55.0%
TGGCTCAAGAGGAAGCTAGG+CGG - chr3_4:72446030-72446049 Msa0520060:three_prime_UTR 55.0%
TAACCTGAAAGACGCTCGCG+TGG - chr3_4:72446148-72446167 Msa0520060:three_prime_UTR 55.0%
CTCTTGGCACGCGGAGTAAA+CGG + chr3_4:72446224-72446243 None:intergenic 55.0%
TTGGAGGAAGCTCGCCAACT+TGG - chr3_4:72446260-72446279 Msa0520060:CDS 55.0%
!! ATTCGCATGGTTGGTGAGGG+TGG - chr3_4:72446818-72446837 Msa0520060:intron 55.0%
GGTGAGGGTGGTGACAATGT+TGG - chr3_4:72446830-72446849 Msa0520060:intron 55.0%
GGTGGTGACAATGTTGGTGC+TGG - chr3_4:72446836-72446855 Msa0520060:intron 55.0%
TTGCTGAAGGTCTCGCCCAA+CGG - chr3_4:72447156-72447175 Msa0520060:intron 55.0%
!! CTCGCCCAACGGATTGCAAA+TGG - chr3_4:72447167-72447186 Msa0520060:intron 55.0%
GTGCACACTCTCATTGGAGC+AGG - chr3_4:72447691-72447710 Msa0520060:CDS 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG - chr3_4:72447703-72447722 Msa0520060:intron 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG - chr3_4:72447704-72447723 Msa0520060:intron 55.0%
GCTCTGGCACTTTAACTGGC+TGG + chr3_4:72448267-72448286 None:intergenic 55.0%
ACTTCAACCTCAGCATGCGC+AGG - chr3_4:72448817-72448836 Msa0520060:CDS 55.0%
GATGAGCAAGGCAGAGAGTG+AGG - chr3_4:72449360-72449379 Msa0520060:intron 55.0%
GAGAGTGAGGCAGGAGATGT+AGG - chr3_4:72449373-72449392 Msa0520060:intron 55.0%
CATATTGTTGCCGCCTGGAC+TGG - chr3_4:72449424-72449443 Msa0520060:intron 55.0%
AACAGGGATACCAGTCCAGG+CGG + chr3_4:72449437-72449456 None:intergenic 55.0%
AGGGAGAGAGTGGTCGATGA+AGG - chr3_4:72449778-72449797 Msa0520060:CDS 55.0%
TTCCCCTGCACCATCCTTCA+AGG - chr3_4:72450228-72450247 Msa0520060:five_prime_UTR 55.0%
AGCCTTGAAGGATGGTGCAG+GGG + chr3_4:72450233-72450252 None:intergenic 55.0%
GAAGCCTTGAAGGATGGTGC+AGG + chr3_4:72450235-72450254 None:intergenic 55.0%
GATTAACGTCCCCGGCCTAG+TGG - chr3_4:72445767-72445786 Msa0520060:three_prime_UTR 60.0%
CATGCCTTCGACCAGCCACT+AGG + chr3_4:72445785-72445804 None:intergenic 60.0%
TCAAGAGGAAGCTAGGCGGC+TGG - chr3_4:72446034-72446053 Msa0520060:three_prime_UTR 60.0%
CAAGAGGAAGCTAGGCGGCT+GGG - chr3_4:72446035-72446054 Msa0520060:three_prime_UTR 60.0%
CTTCCACGCGAGCGTCTTTC+AGG + chr3_4:72446154-72446173 None:intergenic 60.0%
GTGCTCCACTTGAGGGGAAC+AGG - chr3_4:72446793-72446812 Msa0520060:intron 60.0%
TGTGGCTGCCTACCCACAAC+AGG + chr3_4:72447050-72447069 None:intergenic 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG - chr3_4:72447705-72447724 Msa0520060:intron 60.0%
AGCAAGGCAGAGAGTGAGGC+AGG - chr3_4:72449364-72449383 Msa0520060:intron 60.0%
CAAGGTCCGGGGTTCGAACC+CGG - chr3_4:72445558-72445577 Msa0520060:three_prime_UTR 65.0%
TTCGACCAGCCACTAGGCCG+GGG + chr3_4:72445779-72445798 None:intergenic 65.0%
CTTCGACCAGCCACTAGGCC+GGG + chr3_4:72445780-72445799 None:intergenic 65.0%
CCTTCGACCAGCCACTAGGC+CGG + chr3_4:72445781-72445800 None:intergenic 65.0%
TGGTGGCCGGGTTCGAACCC+CGG + chr3_4:72445567-72445586 None:intergenic 70.0%
AACGTCCCCGGCCTAGTGGC+TGG - chr3_4:72445771-72445790 Msa0520060:three_prime_UTR 70.0%
! CCGGCCTAGTGGCTGGTCGA+AGG - chr3_4:72445778-72445797 Msa0520060:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72445394 72450514 72445394 ID=Msa0520060;Name=Msa0520060
chr3_4 mRNA 72445394 72450514 72445394 ID=Msa0520060-mRNA-1;Parent=Msa0520060;Name=Msa0520060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=323|0.87|0.88|1|1|1|9|818|667
chr3_4 exon 72445394 72446619 72445394 ID=Msa0520060-mRNA-1:exon:20058;Parent=Msa0520060-mRNA-1
chr3_4 exon 72446891 72446980 72446891 ID=Msa0520060-mRNA-1:exon:20057;Parent=Msa0520060-mRNA-1
chr3_4 exon 72447070 72447151 72447070 ID=Msa0520060-mRNA-1:exon:20056;Parent=Msa0520060-mRNA-1
chr3_4 exon 72447498 72447715 72447498 ID=Msa0520060-mRNA-1:exon:20055;Parent=Msa0520060-mRNA-1
chr3_4 exon 72448128 72448343 72448128 ID=Msa0520060-mRNA-1:exon:20054;Parent=Msa0520060-mRNA-1
chr3_4 exon 72448688 72448873 72448688 ID=Msa0520060-mRNA-1:exon:20053;Parent=Msa0520060-mRNA-1
chr3_4 exon 72448983 72449101 72448983 ID=Msa0520060-mRNA-1:exon:20052;Parent=Msa0520060-mRNA-1
chr3_4 exon 72449197 72449316 72449197 ID=Msa0520060-mRNA-1:exon:20051;Parent=Msa0520060-mRNA-1
chr3_4 exon 72449627 72450514 72449627 ID=Msa0520060-mRNA-1:exon:20050;Parent=Msa0520060-mRNA-1
chr3_4 five_prime_UTR 72450192 72450514 72450192 ID=Msa0520060-mRNA-1:five_prime_utr;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72449627 72450191 72449627 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72449197 72449316 72449197 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72448983 72449101 72448983 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72448688 72448873 72448688 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72448128 72448343 72448128 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72447498 72447715 72447498 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72447070 72447151 72447070 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72446891 72446980 72446891 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 CDS 72446212 72446619 72446212 ID=Msa0520060-mRNA-1:cds;Parent=Msa0520060-mRNA-1
chr3_4 three_prime_UTR 72445394 72446211 72445394 ID=Msa0520060-mRNA-1:three_prime_utr;Parent=Msa0520060-mRNA-1
Gene Sequence

>Msa0520060

ATGAATGCAGTGAACAATCTAAGAATCATGTCTAGGGTTTTGGCACAGTCGATTAACGTCCCCGGCCTAGTGGCTGGTCGAAGGCATGTCAGAATGATGTATGCCACACAAACTGCTACAATCCGACTGTCTGGTTTCTCTGGATTACATCCTGTGAACTCTTTGGATTCTATGTTGAGATATAAACAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATAGAGCAAGGAGTGGTAGAGGTAGCAGATGTGTAACTAGAGCCATATTTTATCATTTCACGGAAAAACCAATCAAAGTTATTATGCTGGCTCAAGAGGAAGCTAGGCGGCTGGGACACAATTTTGTCGGAACAGAACAAATTTTGTTGGGTATTATTGGCGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTGAAAGACGCTCGCGTGGAAGTCGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCGCGTGCCAAGAGAGTTTTTGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGAACTGAGAACCTGCTTTTGGGTCTTCTTCGAGAGGGTGAAAGTGTGGCAGCACGTGTTCTTGAAAATTTGGGCGCTGATCCAACTAATATTCGCACCCAGGCTAGGGAACAGGTTATTCGCATGGTTGGTGAGGGTGGTGACAATGTTGGTGCTGGAAGTAGTAATAGCAAGATGCCAACTTTGGAGGAATATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTTACTCAAATCTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGAAAGACAGCTATTGCTGAAGGTCTCGCCCAACGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGCAGGTTATAACCCTAGATATGGGTCTACTTGTTACTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTAAAAAAACTAATGGAGGAAATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTCATTGGAGCAGGAGCAGCTGAAGGGGTAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGAAATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGAGTGAAACCATACAAATATTGAAAGGGCTTAGAGAGCGCTACGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTATCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTTCGACTTCAACCTCAGCATGCGCAGTTACCTGAAGAAGCAAGAGGGCTTGAAAAAGAGGTTAGACAGATAGTTAAGGAGAAAGATGAAGCTATTCGTGATCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATATAGAAATGGATCTTAAGGCTCAGATATCAGCACTTATACAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGATAAAGATGGGAGGCTAACTGATAGTAAGGAAAGAACTGTCGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTGACCTTGACTATTATGAGAAGGACAGCAGTTATAACCGAATCAAAAGCTTGGTGACTGAGGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTTACAAAACTGGAGGCTTAG
Protein sequence

>Msa0520060

MNAVNNLRIMSRVLAQSINVPGLVAGRRHVRMMYATQTATIRLSGFSGLHPVNSLDSMLRYKQDFHSKVLTQIGTNRARSGRGSRCVTRAIFYHFTEKPIKVIMLAQEEARRLGHNFVGTEQILLGIIGEGTGIGAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVFELSLEEARQLGHNYIGTENLLLGLLREGESVAARVLENLGADPTNIRTQAREQVIRMVGEGGDNVGAGSSNSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKQVITLDMGLLVTGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGVIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERKFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQPQHAQLPEEARGLEKEVRQIVKEKDEAIRDQEFEKAGELRDIEMDLKAQISALIQKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKDGRLTDSKERTVDFKNTLLIMTSNVGSSVDLDYYEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEA*