AlfalfaGEDB | Msa0452480

M. sativa cultivar zhongmu-4 / Msa0452480

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452480	XP_039687915.1	79.553	313	53	2	5	306	28	340	6.08e-161	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452480	sp\|Q6JN46\|EIX2_SOLLC	34.118	340	178	9	11	307	35	371	2.18e-37	144
Msa0452480	sp\|Q6JN46\|EIX2_SOLLC	30.345	290	154	8	50	296	623	907	1.15e-16	84.0
Msa0452480	sp\|Q6JN46\|EIX2_SOLLC	32.308	260	137	8	52	307	263	487	2.19e-15	80.1
Msa0452480	sp\|Q6JN46\|EIX2_SOLLC	26.557	305	155	9	57	296	415	715	2.11e-14	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452480	A0A072UWA2	28.854	253	160	6	52	296	453	693	2.04e-11	75.9
Msa0452480	A0A072UWA2	78.302	318	58	2	2	308	26	343	9.51e-157	467

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0153430	Msa0452480	0.806413	8.328095e-50	-8.615850e-47
Msa0389030	Msa0452480	0.806998	6.264728e-50	-8.615850e-47
Msa0389050	Msa0452480	0.819113	1.377592e-52	-8.615850e-47
Msa0452480	Msa0885010	0.812899	3.360638e-51	-8.615850e-47
Msa0452480	Msa0885170	0.803197	3.910463e-49	-8.615850e-47
Msa0452480	Msa0912200	0.813900	2.025383e-51	-8.615850e-47
Msa0452480	Msa0912410	0.804107	2.531344e-49	-8.615850e-47
Msa0452480	Msa0986870	0.817370	3.415841e-52	-8.615850e-47
Msa0452480	Msa1050480	0.808497	3.008722e-50	-8.615850e-47
Msa0452480	Msa1135660	0.812346	4.440962e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452480	MtrunA17_Chr3g0097701	78.302	318	58	2	2	308	26	343	1.83e-160	467
Msa0452480	MtrunA17_Chr3g0097701	28.854	253	160	6	52	296	453	693	3.93e-15	75.9
Msa0452480	MtrunA17_Chr3g0097701	29.066	289	147	10	55	297	291	567	4.07e-14	72.8
Msa0452480	MtrunA17_Chr3g0097271	77.778	297	65	1	5	301	29	324	3.74e-150	424
Msa0452480	MtrunA17_Chr3g0097461	74.841	314	67	3	4	308	27	337	1.58e-148	436
Msa0452480	MtrunA17_Chr3g0097461	33.108	148	70	1	178	296	539	686	3.86e-15	75.9
Msa0452480	MtrunA17_Chr3g0097341	77.740	292	64	1	5	296	29	319	1.06e-147	434
Msa0452480	MtrunA17_Chr3g0097341	31.333	150	73	1	177	296	538	687	6.61e-14	72.4
Msa0452480	MtrunA17_Chr3g0097761	75.325	308	65	3	11	308	33	339	1.01e-145	429
Msa0452480	MtrunA17_Chr3g0097761	35.135	148	67	2	178	296	541	688	1.80e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452480	AT5G27060.2	34.323	303	124	8	11	296	38	282	3.51e-33	129
Msa0452480	AT5G27060.2	32.353	204	125	4	108	308	512	705	1.54e-13	71.6
Msa0452480	AT5G27060.3	34.323	303	124	8	11	296	37	281	3.61e-33	129
Msa0452480	AT5G27060.3	32.353	204	125	4	108	308	511	704	1.56e-13	71.6
Msa0452480	AT5G27060.1	34.323	303	124	8	11	296	37	281	3.61e-33	129
Msa0452480	AT5G27060.1	32.353	204	125	4	108	308	511	704	1.56e-13	71.6
Msa0452480	AT3G11010.2	33.544	316	134	10	11	308	38	295	1.12e-31	125
Msa0452480	AT3G11010.2	33.824	204	122	4	108	308	512	705	3.35e-16	79.7
Msa0452480	AT3G11010.2	29.412	272	142	10	51	294	603	852	2.90e-13	70.9
Msa0452480	AT3G11010.1	35.231	281	121	8	32	308	9	232	9.24e-31	122

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Find 52 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATTTGGTAAATGAG+AGG	0.628216	3_3:-41463463	None:intergenic
AAATTCAAATACTCAACATA+TGG	0.395777	3_3:-41463399	None:intergenic
AACTGTAATTCTAATAGTGA+AGG	0.569760	3_3:-41463351	None:intergenic
AATGATTGTTGTGCTTGGCA+AGG	0.631220	3_3:+41462994	Msa0452480:CDS
AATTCAAATACTCAACATAT+GGG	0.531191	3_3:-41463398	None:intergenic
ACACTGTTAACCTTCAAACA+AGG	0.711922	3_3:+41462928	Msa0452480:CDS
ACCAATAGATAAGTAATTTA+AGG	0.189657	3_3:-41463718	None:intergenic
ACTTGAGTTTCTCAGTTACT+TGG	0.399041	3_3:+41463107	Msa0452480:CDS
AGATCAAGATCTTGAATATT+TGG	0.195731	3_3:-41463642	None:intergenic
AGCAATAATCACAGGGTGCT+TGG	0.421396	3_3:+41462883	Msa0452480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACATGGATAATCTTGAT+TGG	+	chr3_3:41463238-41463257	Msa0452480:CDS	30.0%
TATGAAGATCAATTACACTG+AGG	-	chr3_3:41463296-41463315	None:intergenic	30.0%
CAGTGTAATTGATCTTCATA+AGG	+	chr3_3:41463296-41463315	Msa0452480:CDS	30.0%
GTGAGATTAAAAAACCCATT+TGG	-	chr3_3:41463477-41463496	None:intergenic	30.0%
TTGGTTATAAGAGAGATCAA+GGG	-	chr3_3:41463586-41463605	None:intergenic	30.0%
TTCACATGGATAATCTTGAT+TGG	+	chr3_3:41463238-41463257	Msa0452480:CDS	30.0%
TATGAAGATCAATTACACTG+AGG	-	chr3_3:41463296-41463315	None:intergenic	30.0%
CAGTGTAATTGATCTTCATA+AGG	+	chr3_3:41463296-41463315	Msa0452480:CDS	30.0%
GTGAGATTAAAAAACCCATT+TGG	-	chr3_3:41463477-41463496	None:intergenic	30.0%
TTGGTTATAAGAGAGATCAA+GGG	-	chr3_3:41463586-41463605	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	41462877	41463803	41462877	ID=Msa0452480;Name=Msa0452480
chr3_3	mRNA	41462877	41463803	41462877	ID=Msa0452480-mRNA-1;Parent=Msa0452480;Name=Msa0452480-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|308
chr3_3	exon	41462877	41463803	41462877	ID=Msa0452480-mRNA-1:exon:7548;Parent=Msa0452480-mRNA-1
chr3_3	CDS	41462877	41463803	41462877	ID=Msa0452480-mRNA-1:cds;Parent=Msa0452480-mRNA-1

Gene Sequence

>Msa0452480

ATGTCTAGCAATAATCACAGGGTGCTTGGATGCAATGACAAAGATCGAGAGACACTGTTAACCTTCAAACAAGGCATCAATGACACTCTTGGTCGGATATCAACGTGGTCAACCGAAAATGATTGTTGTGCTTGGCAAGGAGTCCATTGTGACAACATTACAGGAAGAGTTACAGAAATTGATCTCAGCTACAATCAATTGGAAGGTGAGATGAATCTTTGTATTCTAGAACTTGAGTTTCTCAGTTACTTGGATTTGAGTGAGAATGAATTTGATGTGATAAGAATACCATCCATTCAACAAAACATCACACATTCATCTAAACTTGTCTTCCTTGACTTATTCAATTTTGATAATATTCTTCACATGGATAATCTTGATTGGTTTTCTCCACTTTCTTCCTTAAAATATCTCAACCTCAGTGTAATTGATCTTCATAAGGAAACCAACTGGCTTCAAATAGTGAATACACTTCCTTCACTATTAGAATTACAGTTGAGTTCTTGTAACCTGAACAACTTCCCATATGTTGAGTATTTGAATTTGTCTTCACTTGTAACTCTTGATCTTTCTCAAAACAACTTCACCTCTCATTTACCAAATGGGTTTTTTAATCTCACCATAGATCTCACCTATCTTGACCTTTCTAGGAACAATATATATGGTGAGATACCTTCAAGCTTACTAAACCTTCAAAATTTGAAATCCCTTGATCTCTCTTATAACCAACTACAAGGATCAATTCCAGATAGAATTGGCCAGCTACCAAATATTCAAGATCTTGATCTTTCATCGAACATGTTAAGTGGTTTCATTCCTTCCACACTAGGAAACCTCTCTTCCTTAAATTACTTATCTATTGGTTCTAATAATTTCTCTGGTGAAATTTCAAATTTATATTTTTCCAAACTCTCTAGTTTAGATTAA

Protein sequence

>Msa0452480

MSSNNHRVLGCNDKDRETLLTFKQGINDTLGRISTWSTENDCCAWQGVHCDNITGRVTEIDLSYNQLEGEMNLCILELEFLSYLDLSENEFDVIRIPSIQQNITHSSKLVFLDLFNFDNILHMDNLDWFSPLSSLKYLNLSVIDLHKETNWLQIVNTLPSLLELQLSSCNLNNFPYVEYLNLSSLVTLDLSQNNFTSHLPNGFFNLTIDLTYLDLSRNNIYGEIPSSLLNLQNLKSLDLSYNQLQGSIPDRIGQLPNIQDLDLSSNMLSGFIPSTLGNLSSLNYLSIGSNNFSGEISNLYFSKLSSLD*