AlfalfaGEDB | Msa0885170

M. sativa cultivar zhongmu-4 / Msa0885170

KEGG: -
GO: GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
PFAM: PF00560.36

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0885170	XP_024642177.1	81.743	241	39	2	1	241	1	236	2.56e-136	393

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0885170	sp\|Q6JN46\|EIX2_SOLLC	46.154	208	106	3	33	236	804	1009	4.44e-51	181
Msa0885170	sp\|Q6JN46\|EIX2_SOLLC	44.186	86	47	1	54	139	633	717	1.03e-12	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014790	Msa0885170	0.813151	2.959454e-51	-8.615850e-47
Msa0042390	Msa0885170	0.802540	5.345574e-49	-8.615850e-47
Msa0050240	Msa0885170	0.806052	9.921329e-50	-8.615850e-47
Msa0071550	Msa0885170	0.809043	2.300056e-50	-8.615850e-47
Msa0088550	Msa0885170	0.807093	5.981684e-50	-8.615850e-47
Msa0135360	Msa0885170	0.805140	1.541326e-49	-8.615850e-47
Msa0151860	Msa0885170	0.805894	1.070822e-49	-8.615850e-47
Msa0153430	Msa0885170	0.809914	1.495028e-50	-8.615850e-47
Msa0179860	Msa0885170	0.804886	1.741569e-49	-8.615850e-47
Msa0232860	Msa0885170	0.808885	2.486325e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0885170	MtrunA17_Chr6g0465251	81.743	241	39	2	1	241	259	494	7.41e-137	394
Msa0885170	MtrunA17_Chr6g0465251	40.385	104	49	2	51	142	152	254	2.57e-11	62.8
Msa0885170	MtrunA17_Chr6g0465251	42.857	91	47	1	53	138	125	215	2.88e-11	62.8
Msa0885170	MtrunA17_Chr6g0465151	80.498	241	47	0	1	241	671	911	2.89e-135	402
Msa0885170	MtrunA17_Chr6g0465151	37.815	119	71	2	50	166	525	642	9.50e-12	64.3
Msa0885170	MtrunA17_Chr6g0465231	80.913	241	46	0	1	241	880	1120	2.19e-131	397
Msa0885170	MtrunA17_Chr6g0465231	42.982	114	57	1	26	139	129	234	6.20e-17	79.7
Msa0885170	MtrunA17_Chr6g0465231	36.691	139	78	4	46	181	729	860	3.19e-13	68.9
Msa0885170	MtrunA17_Chr6g0465231	42.697	89	51	0	51	139	170	258	7.14e-13	67.8
Msa0885170	MtrunA17_Chr6g0465231	41.667	96	55	1	48	142	780	875	2.65e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0885170	AT1G07390.5	35.808	229	124	3	15	221	801	1028	5.05e-32	124
Msa0885170	AT1G07390.5	32.331	133	65	2	51	159	664	795	1.09e-11	64.7
Msa0885170	AT1G07390.4	35.808	229	124	3	15	221	830	1057	5.42e-32	124
Msa0885170	AT1G07390.4	32.331	133	65	2	51	159	693	824	1.29e-11	64.3
Msa0885170	AT1G07390.3	35.808	229	124	3	15	221	836	1063	5.81e-32	124
Msa0885170	AT1G07390.3	32.331	133	65	2	51	159	699	830	1.34e-11	64.3
Msa0885170	AT1G07390.1	35.808	229	124	3	15	221	787	1014	6.77e-32	123
Msa0885170	AT1G07390.1	32.331	133	65	2	51	159	650	781	1.57e-11	64.3
Msa0885170	AT1G07390.2	35.808	229	124	3	15	221	666	893	6.92e-32	123
Msa0885170	AT1G07390.2	32.331	133	65	2	51	159	529	660	1.43e-11	64.3

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Find 189 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATTTAAGGAACGTA+AGG	0.567930	6_1:+40253256	None:intergenic
AAATAATAAATTGAAGGGTC+TGG	0.436602	6_1:-40253306	Msa0885170:five_prime_UTR
AAATTCCTACAAATATCGGA+AGG	0.652969	6_1:-40251614	Msa0885170:CDS
AACTGCAAGCATTACTATTG+AGG	0.546054	6_1:-40252104	Msa0885170:five_prime_UTR
AACTTATGTTTGACAATGAG+TGG	0.535807	6_1:+40253429	None:intergenic
AACTTATGTTTGACACCCAC+TGG	0.430289	6_1:+40253582	None:intergenic
AAGGGCACTCGATAGTGCGT+CGG	0.679994	6_1:-40250736	Msa0885170:three_prime_UTR
AAGGTCAAGCTCAACAAGAT+TGG	0.427027	6_1:+40253406	None:intergenic
AAGGTCAAGCTCAACAAGAT+TGG	0.436963	6_1:+40253559	None:intergenic
AATAGTTGGTTTCAAATGGT+TGG	0.450598	6_1:-40253755	Msa0885170:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGACAACATGTGAAGAT+GGG	+	chr6_1:40250496-40250515	None:intergenic	30.0%
ATATTGACAACATGTGAAGA+TGG	+	chr6_1:40250497-40250516	None:intergenic	30.0%
TTGAGAGAACTAAGATTATC+TGG	-	chr6_1:40250810-40250829	Msa0885170:intron	30.0%
AACTTATGTTTGACAATGAG+TGG	+	chr6_1:40250863-40250882	None:intergenic	30.0%
TAAGGCACATAAATTCATGA+AGG	+	chr6_1:40251018-40251037	None:intergenic	30.0%
AAACAGATTTAAGGAACGTA+AGG	+	chr6_1:40251036-40251055	None:intergenic	30.0%
ATTGCATCAAACTCTTTAGA+AGG	-	chr6_1:40251281-40251300	Msa0885170:CDS	30.0%
TCATGCTTAGGTATAATTCT+TGG	+	chr6_1:40251433-40251452	None:intergenic	30.0%
CTAAGCATGAATCAAATCAA+TGG	-	chr6_1:40251443-40251462	Msa0885170:CDS	30.0%
TCTCTCAATATTCTCATCTT+TGG	-	chr6_1:40251478-40251497	Msa0885170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	40250359	40253952	40250359	ID=Msa0885170;Name=Msa0885170
chr6_1	mRNA	40250359	40253952	40250359	ID=Msa0885170-mRNA-1;Parent=Msa0885170;Name=Msa0885170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=2054\|0\|0.5\|1\|0\|0.5\|2\|415\|241
chr6_1	exon	40250359	40250773	40250359	ID=Msa0885170-mRNA-1:exon:9123;Parent=Msa0885170-mRNA-1
chr6_1	exon	40251173	40253952	40251173	ID=Msa0885170-mRNA-1:exon:9122;Parent=Msa0885170-mRNA-1
chr6_1	five_prime_UTR	40251899	40253952	40251899	ID=Msa0885170-mRNA-1:five_prime_utr;Parent=Msa0885170-mRNA-1
chr6_1	CDS	40251173	40251898	40251173	ID=Msa0885170-mRNA-1:cds;Parent=Msa0885170-mRNA-1
chr6_1	three_prime_UTR	40250359	40250773	40250359	ID=Msa0885170-mRNA-1:three_prime_utr;Parent=Msa0885170-mRNA-1

Gene Sequence

>Msa0885170

ATGACTCAAAAAGCTTCATCACCTGGTTTTACCAATCATTATTATGTTATATACCGAGGATATGTGCGTTATGGAAATGAATATGAATTGAATGCATTCTTGACATGGAAAGGTGAAGAACGTGTGTTCAACAACAATGGATTGGTTCTTCTAAAAGTCATAGATCTCTCAAGCAATCATTTTTCAGGAGAGATTCCACCTGAAATTGCAGATTTGATTCAATTGGTCTCATTGAATTTATCAAGAAACATCTTCACAGGGAAAATTCCTACAAATATCGGAAGGTTAACATCACTTGAATTTCTTGATTTGTCACGAAACCAGTTGCTTGGTTCAATTCCTCCAAGTCTCTCTCAAATAGATCGAATTGGTGTGTTAGATTTGTCTCATAATCAATTATCTGGAGAAATTCCAACGAGTACACAACTACAAAGTTTCAATGCGTCATCTTACGAAGATAATCTTGATCTTTGTGGTCCACCACTTGTAAAATTGTGTCCTCAGGGGAAGCCACCACATGAACCAAAAGTAGAAGTTCAAGACGGTGAAGATTTGCTTCTCAATCGTGGATTTTACATCAGTCTGACATTCGGATTTATTATAGGCTTCTGGGGAGTATTTGGCTCAATCCTAATCAAGCGCACTTGGAGACATGCTTATTTCAAGTTCATGAACAATTTAGCGGATAATATTTATGTGAAATGGAGAAGGTGGCTTAGAGACTAA

Protein sequence

>Msa0885170

MTQKASSPGFTNHYYVIYRGYVRYGNEYELNAFLTWKGEERVFNNNGLVLLKVIDLSSNHFSGEIPPEIADLIQLVSLNLSRNIFTGKIPTNIGRLTSLEFLDLSRNQLLGSIPPSLSQIDRIGVLDLSHNQLSGEIPTSTQLQSFNASSYEDNLDLCGPPLVKLCPQGKPPHEPKVEVQDGEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRTWRHAYFKFMNNLADNIYVKWRRWLRD*