Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452870 | XP_024634879.1 | 81.301 | 246 | 42 | 2 | 1 | 245 | 1 | 243 | 5.94e-142 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452870 | G7IXJ0 | 86.740 | 181 | 24 | 0 | 14 | 194 | 1 | 181 | 1.15e-115 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142200 | Msa0452870 | 0.800417 | 1.455446e-48 | -8.615850e-47 |
| Msa0227470 | Msa0452870 | 0.811086 | 8.346791e-51 | -8.615850e-47 |
| Msa0407780 | Msa0452870 | 0.860278 | 2.309550e-63 | -8.615850e-47 |
| Msa0407870 | Msa0452870 | 0.836840 | 7.390188e-57 | -8.615850e-47 |
| Msa0407890 | Msa0452870 | 0.811990 | 5.309488e-51 | -8.615850e-47 |
| Msa0452870 | Msa0452920 | 0.805331 | 1.405787e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452870 | MtrunA17_Chr3g0098291 | 72.996 | 237 | 59 | 5 | 14 | 246 | 1 | 236 | 4.90e-118 | 336 |
| Msa0452870 | MtrunA17_Chr3g0098521 | 86.275 | 153 | 21 | 0 | 44 | 196 | 1 | 153 | 2.70e-99 | 286 |
| Msa0452870 | MtrunA17_Chr3g0098491 | 84.768 | 151 | 23 | 0 | 44 | 194 | 1 | 151 | 4.58e-96 | 278 |
| Msa0452870 | MtrunA17_Chr3g0102001 | 45.662 | 219 | 107 | 4 | 38 | 245 | 21 | 238 | 1.79e-57 | 194 |
| Msa0452870 | MtrunA17_Chr3g0098541 | 48.936 | 188 | 86 | 3 | 67 | 245 | 5 | 191 | 1.02e-55 | 182 |
| Msa0452870 | MtrunA17_Chr5g0439071 | 41.627 | 209 | 114 | 4 | 41 | 243 | 25 | 231 | 1.05e-44 | 157 |
| Msa0452870 | MtrunA17_Chr5g0439061 | 42.791 | 215 | 112 | 5 | 41 | 245 | 25 | 238 | 2.75e-44 | 158 |
| Msa0452870 | MtrunA17_Chr5g0439021 | 44.025 | 159 | 83 | 3 | 41 | 194 | 25 | 182 | 3.48e-37 | 129 |
| Msa0452870 | MtrunA17_Chr2g0286601 | 34.634 | 205 | 127 | 4 | 44 | 245 | 14 | 214 | 3.91e-27 | 109 |
| Msa0452870 | MtrunA17_Chr2g0286571 | 33.981 | 206 | 129 | 4 | 44 | 246 | 14 | 215 | 2.61e-26 | 104 |
| Msa0452870 | MtrunA17_Chr2g0286551 | 34.634 | 205 | 127 | 4 | 44 | 245 | 14 | 214 | 3.29e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGCTGAATCATAGAATT+AGG | 0.302724 | 3_3:+42523418 | None:intergenic |
| ATAGCAAGATTGAGATCATT+TGG | 0.331887 | 3_3:+42522820 | None:intergenic |
| CTGTGCTTGCACGCCATAAA+AGG | 0.343353 | 3_3:-42522870 | Msa0452870:CDS |
| GAATGAAAATAAGAAGAATA+AGG | 0.349218 | 3_3:+42523505 | None:intergenic |
| TGAAACTTAATCTTAGAGTT+AGG | 0.353782 | 3_3:+42523457 | None:intergenic |
| TAAGTTTCAAACTTCCGAAA+TGG | 0.365986 | 3_3:-42523482 | Msa0452870:exon |
| CTTAGAGTTAGGATCCATTT+CGG | 0.385934 | 3_3:+42523468 | None:intergenic |
| TTTCACAAGATAAGAATAAA+GGG | 0.386097 | 3_3:-42523144 | Msa0452870:CDS |
| AAGTGACACAAACACATATA+TGG | 0.400607 | 3_3:-42522466 | Msa0452870:exon |
| CATAGAATTAGGATCCATTT+CGG | 0.411404 | 3_3:+42523429 | None:intergenic |
| TAAGTTTCAACCCACCGAAA+TGG | 0.417432 | 3_3:-42523443 | Msa0452870:CDS |
| GATTAAAGTAAACAATGAAA+AGG | 0.422133 | 3_3:-42522914 | Msa0452870:CDS |
| TAGCAAGATTGAGATCATTT+GGG | 0.422742 | 3_3:+42522821 | None:intergenic |
| CTTCACCTTGCAGCATATAG+AGG | 0.427598 | 3_3:-42522991 | Msa0452870:CDS |
| CTCTTGAAATTCTTGCTACT+AGG | 0.427955 | 3_3:-42522552 | Msa0452870:CDS |
| ATTAAAGTAAACAATGAAAA+GGG | 0.436606 | 3_3:-42522913 | Msa0452870:CDS |
| AGTTTGTAATGGAAGACAAA+TGG | 0.447631 | 3_3:-42523203 | Msa0452870:CDS |
| AAGAGGAGTATCACCTCTTT+CGG | 0.455469 | 3_3:+42523011 | None:intergenic |
| CGTGTTCCGCGAGTTTGTAA+TGG | 0.455705 | 3_3:-42523214 | Msa0452870:CDS |
| AATAAGGATCAATGAGAGAT+GGG | 0.462738 | 3_3:+42523521 | None:intergenic |
| ACCGAACATTTCTCTATGAA+TGG | 0.471652 | 3_3:+42522765 | None:intergenic |
| GAATAAGGATCAATGAGAGA+TGG | 0.481962 | 3_3:+42523520 | None:intergenic |
| GCCATTCATAGAGAAATGTT+CGG | 0.497959 | 3_3:-42522766 | Msa0452870:intron |
| TTTGCAATGAAGACCGAAAG+AGG | 0.515414 | 3_3:-42523024 | Msa0452870:CDS |
| GATCAATGAGAGATGGGTAG+TGG | 0.515618 | 3_3:+42523527 | None:intergenic |
| GTTTGTAATGGAAGACAAAT+GGG | 0.518683 | 3_3:-42523202 | Msa0452870:CDS |
| ATGAATGGCAACGTGAAGAA+TGG | 0.524484 | 3_3:+42522780 | None:intergenic |
| AAGATAAGAATAAAGGGAAG+AGG | 0.544798 | 3_3:-42523138 | Msa0452870:CDS |
| GTACCATCTTGAAAGTCATA+AGG | 0.546594 | 3_3:+42523376 | None:intergenic |
| GTACCTTATGACTTTCAAGA+TGG | 0.546774 | 3_3:-42523379 | Msa0452870:intron |
| AGTATGTGTAAATGTATCGT+TGG | 0.546925 | 3_3:-42522961 | Msa0452870:CDS |
| CGCTCTACAGAGGACGAACA+TGG | 0.548818 | 3_3:-42522583 | Msa0452870:CDS |
| CATTACAAACTCGCGGAACA+CGG | 0.552796 | 3_3:+42523215 | None:intergenic |
| CTATATGCTGCAAGGTGAAG+AGG | 0.554034 | 3_3:+42522994 | None:intergenic |
| GAATTAGGATCCATTTCGGT+GGG | 0.559223 | 3_3:+42523433 | None:intergenic |
| AAATTGATGTAGGTAAAGAA+AGG | 0.583759 | 3_3:+42522846 | None:intergenic |
| TGAATCCTCTATATGCTGCA+AGG | 0.593278 | 3_3:+42522986 | None:intergenic |
| CAATCTTGCTATGAATAACG+AGG | 0.598611 | 3_3:-42522809 | Msa0452870:CDS |
| AGAATTAGGATCCATTTCGG+TGG | 0.599853 | 3_3:+42523432 | None:intergenic |
| CTAGTAGCAAGAATTTCAAG+AGG | 0.608826 | 3_3:+42522553 | None:intergenic |
| GTAAAGCATAATGATCAAAG+TGG | 0.624361 | 3_3:-42523048 | Msa0452870:CDS |
| TGTCTTCCATTACAAACTCG+CGG | 0.659366 | 3_3:+42523208 | None:intergenic |
| AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_3:-42523121 | Msa0452870:CDS |
| AATCTTGCTATGAATAACGA+GGG | 0.709353 | 3_3:-42522808 | Msa0452870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGTCACATTAAAAAAT+TGG | + | chr3_3:42522705-42522724 | None:intergenic | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | - | chr3_3:42523075-42523094 | Msa0452870:CDS | 15.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | + | chr3_3:42522705-42522724 | None:intergenic | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | - | chr3_3:42523075-42523094 | Msa0452870:CDS | 15.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | + | chr3_3:42522486-42522505 | None:intergenic | 20.0% |
| !!! | TTTTCACAAGATAAGAATAA+AGG | - | chr3_3:42522843-42522862 | Msa0452870:CDS | 20.0% |
| !! | TTTCACAAGATAAGAATAAA+GGG | - | chr3_3:42522844-42522863 | Msa0452870:CDS | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | - | chr3_3:42523074-42523093 | Msa0452870:CDS | 20.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | + | chr3_3:42522486-42522505 | None:intergenic | 20.0% |
| !!! | TTTTCACAAGATAAGAATAA+AGG | - | chr3_3:42522843-42522862 | Msa0452870:CDS | 20.0% |
| !! | TTTCACAAGATAAGAATAAA+GGG | - | chr3_3:42522844-42522863 | Msa0452870:CDS | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | - | chr3_3:42523074-42523093 | Msa0452870:CDS | 20.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | + | chr3_3:42522534-42522553 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | - | chr3_3:42522639-42522658 | Msa0452870:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | + | chr3_3:42522702-42522721 | None:intergenic | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | - | chr3_3:42523036-42523055 | Msa0452870:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | + | chr3_3:42523145-42523164 | None:intergenic | 25.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | + | chr3_3:42522534-42522553 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | - | chr3_3:42522639-42522658 | Msa0452870:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | + | chr3_3:42522702-42522721 | None:intergenic | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | - | chr3_3:42523036-42523055 | Msa0452870:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | + | chr3_3:42523145-42523164 | None:intergenic | 25.0% |
| AATAAGGATCAATGAGAGAT+GGG | + | chr3_3:42522470-42522489 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | - | chr3_3:42522506-42522525 | Msa0452870:CDS | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | + | chr3_3:42522562-42522581 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | + | chr3_3:42522591-42522610 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | + | chr3_3:42522649-42522668 | None:intergenic | 30.0% | |
| ! | AGTTTGTAATGGAAGACAAA+TGG | - | chr3_3:42522785-42522804 | Msa0452870:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | - | chr3_3:42522786-42522805 | Msa0452870:CDS | 30.0% |
| AAGATAAGAATAAAGGGAAG+AGG | - | chr3_3:42522850-42522869 | Msa0452870:CDS | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | - | chr3_3:42522940-42522959 | Msa0452870:CDS | 30.0% | |
| AGTATGTGTAAATGTATCGT+TGG | - | chr3_3:42523027-42523046 | Msa0452870:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | + | chr3_3:42523155-42523174 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | + | chr3_3:42523170-42523189 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | + | chr3_3:42523171-42523190 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | - | chr3_3:42523180-42523199 | Msa0452870:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | + | chr3_3:42523495-42523514 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | - | chr3_3:42523522-42523541 | Msa0452870:five_prime_UTR | 30.0% | |
| AATAAGGATCAATGAGAGAT+GGG | + | chr3_3:42522470-42522489 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | - | chr3_3:42522506-42522525 | Msa0452870:CDS | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | + | chr3_3:42522562-42522581 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | + | chr3_3:42522591-42522610 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | + | chr3_3:42522649-42522668 | None:intergenic | 30.0% | |
| ! | AGTTTGTAATGGAAGACAAA+TGG | - | chr3_3:42522785-42522804 | Msa0452870:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | - | chr3_3:42522786-42522805 | Msa0452870:CDS | 30.0% |
| AAGATAAGAATAAAGGGAAG+AGG | - | chr3_3:42522850-42522869 | Msa0452870:CDS | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | - | chr3_3:42522940-42522959 | Msa0452870:CDS | 30.0% | |
| AGTATGTGTAAATGTATCGT+TGG | - | chr3_3:42523027-42523046 | Msa0452870:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | + | chr3_3:42523155-42523174 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | + | chr3_3:42523170-42523189 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | + | chr3_3:42523171-42523190 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | - | chr3_3:42523180-42523199 | Msa0452870:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | + | chr3_3:42523495-42523514 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | - | chr3_3:42523522-42523541 | Msa0452870:five_prime_UTR | 30.0% | |
| GAATAAGGATCAATGAGAGA+TGG | + | chr3_3:42522471-42522490 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | + | chr3_3:42522523-42522542 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | + | chr3_3:42522573-42522592 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | - | chr3_3:42522609-42522628 | Msa0452870:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | + | chr3_3:42522615-42522634 | None:intergenic | 35.0% | |
| TCGTTGGAAAAAATGGTGAA+AGG | - | chr3_3:42523043-42523062 | Msa0452870:CDS | 35.0% | |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | + | chr3_3:42523134-42523153 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | - | chr3_3:42523179-42523198 | Msa0452870:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | - | chr3_3:42523222-42523241 | Msa0452870:intron | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | + | chr3_3:42523226-42523245 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | - | chr3_3:42523345-42523364 | Msa0452870:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | + | chr3_3:42523438-42523457 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | - | chr3_3:42523436-42523455 | Msa0452870:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | - | chr3_3:42523475-42523494 | Msa0452870:exon | 35.0% | |
| GAATAAGGATCAATGAGAGA+TGG | + | chr3_3:42522471-42522490 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | + | chr3_3:42522523-42522542 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | + | chr3_3:42522573-42522592 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | - | chr3_3:42522609-42522628 | Msa0452870:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | + | chr3_3:42522615-42522634 | None:intergenic | 35.0% | |
| TCGTTGGAAAAAATGGTGAA+AGG | - | chr3_3:42523043-42523062 | Msa0452870:CDS | 35.0% | |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | + | chr3_3:42523134-42523153 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | - | chr3_3:42523179-42523198 | Msa0452870:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | - | chr3_3:42523222-42523241 | Msa0452870:intron | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | + | chr3_3:42523226-42523245 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | - | chr3_3:42523345-42523364 | Msa0452870:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | + | chr3_3:42523438-42523457 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | - | chr3_3:42523436-42523455 | Msa0452870:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | - | chr3_3:42523475-42523494 | Msa0452870:exon | 35.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | - | chr3_3:42522545-42522564 | Msa0452870:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | + | chr3_3:42522558-42522577 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | + | chr3_3:42522559-42522578 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | + | chr3_3:42522783-42522802 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | - | chr3_3:42522867-42522886 | Msa0452870:CDS | 40.0% | |
| ! | ACGTTTTACACTGTCTTCGT+CGG | + | chr3_3:42522905-42522924 | None:intergenic | 40.0% |
| TTTGCAATGAAGACCGAAAG+AGG | - | chr3_3:42522964-42522983 | Msa0452870:CDS | 40.0% | |
| !! | AAGAGGAGTATCACCTCTTT+CGG | + | chr3_3:42522980-42522999 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | + | chr3_3:42523005-42523024 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | + | chr3_3:42523211-42523230 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | - | chr3_3:42523350-42523369 | Msa0452870:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | - | chr3_3:42523395-42523414 | Msa0452870:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | + | chr3_3:42523399-42523418 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | - | chr3_3:42523478-42523497 | Msa0452870:exon | 40.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | - | chr3_3:42522545-42522564 | Msa0452870:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | + | chr3_3:42522558-42522577 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | + | chr3_3:42522559-42522578 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | + | chr3_3:42522783-42522802 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | - | chr3_3:42522867-42522886 | Msa0452870:CDS | 40.0% | |
| ! | ACGTTTTACACTGTCTTCGT+CGG | + | chr3_3:42522905-42522924 | None:intergenic | 40.0% |
| TTTGCAATGAAGACCGAAAG+AGG | - | chr3_3:42522964-42522983 | Msa0452870:CDS | 40.0% | |
| !! | AAGAGGAGTATCACCTCTTT+CGG | + | chr3_3:42522980-42522999 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | + | chr3_3:42523005-42523024 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | + | chr3_3:42523211-42523230 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | - | chr3_3:42523350-42523369 | Msa0452870:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | - | chr3_3:42523395-42523414 | Msa0452870:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | + | chr3_3:42523399-42523418 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | - | chr3_3:42523478-42523497 | Msa0452870:exon | 40.0% | |
| GATCAATGAGAGATGGGTAG+TGG | + | chr3_3:42522464-42522483 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | + | chr3_3:42522776-42522795 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | + | chr3_3:42522997-42523016 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | - | chr3_3:42522997-42523016 | Msa0452870:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | + | chr3_3:42523108-42523127 | None:intergenic | 45.0% | |
| GATCAATGAGAGATGGGTAG+TGG | + | chr3_3:42522464-42522483 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | + | chr3_3:42522776-42522795 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | + | chr3_3:42522997-42523016 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | - | chr3_3:42522997-42523016 | Msa0452870:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | + | chr3_3:42523108-42523127 | None:intergenic | 45.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | - | chr3_3:42522774-42522793 | Msa0452870:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | - | chr3_3:42523118-42523137 | Msa0452870:CDS | 50.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | - | chr3_3:42522774-42522793 | Msa0452870:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | - | chr3_3:42523118-42523137 | Msa0452870:CDS | 50.0% | |
| CGCTCTACAGAGGACGAACA+TGG | - | chr3_3:42523405-42523424 | Msa0452870:CDS | 55.0% | |
| CGCTCTACAGAGGACGAACA+TGG | - | chr3_3:42523405-42523424 | Msa0452870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42522461 | 42523549 | 42522461 | ID=Msa0452870;Name=Msa0452870 |
| chr3_3 | mRNA | 42522461 | 42523549 | 42522461 | ID=Msa0452870-mRNA-1;Parent=Msa0452870;Name=Msa0452870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|3|22|246 |
| chr3_3 | exon | 42522461 | 42522643 | 42522461 | ID=Msa0452870-mRNA-1:exon:7706;Parent=Msa0452870-mRNA-1 |
| chr3_3 | exon | 42522767 | 42523240 | 42522767 | ID=Msa0452870-mRNA-1:exon:7705;Parent=Msa0452870-mRNA-1 |
| chr3_3 | exon | 42523380 | 42523549 | 42523380 | ID=Msa0452870-mRNA-1:exon:7704;Parent=Msa0452870-mRNA-1 |
| chr3_3 | five_prime_UTR | 42523486 | 42523549 | 42523486 | ID=Msa0452870-mRNA-1:five_prime_utr;Parent=Msa0452870-mRNA-1 |
| chr3_3 | CDS | 42523380 | 42523485 | 42523380 | ID=Msa0452870-mRNA-1:cds;Parent=Msa0452870-mRNA-1 |
| chr3_3 | CDS | 42522767 | 42523240 | 42522767 | ID=Msa0452870-mRNA-1:cds;Parent=Msa0452870-mRNA-1 |
| chr3_3 | CDS | 42522483 | 42522643 | 42522483 | ID=Msa0452870-mRNA-1:cds;Parent=Msa0452870-mRNA-1 |
| chr3_3 | three_prime_UTR | 42522461 | 42522482 | 42522461 | ID=Msa0452870-mRNA-1:three_prime_utr;Parent=Msa0452870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
