Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407870 | XP_024634584.1 | 73.377 | 154 | 41 | 0 | 14 | 167 | 1 | 154 | 4.96e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407870 | G7IXJ0 | 73.377 | 154 | 41 | 0 | 14 | 167 | 1 | 154 | 4.55e-75 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142200 | Msa0407870 | 0.825368 | 4.870537e-54 | -8.615850e-47 |
| Msa0227470 | Msa0407870 | 0.822478 | 2.318218e-53 | -8.615850e-47 |
| Msa0407780 | Msa0407870 | 0.880871 | 3.840508e-70 | -8.615850e-47 |
| Msa0407870 | Msa0407890 | 0.881950 | 1.566522e-70 | -8.615850e-47 |
| Msa0407870 | Msa0452870 | 0.836840 | 7.390188e-57 | -8.615850e-47 |
| Msa0407870 | Msa0452920 | 0.824460 | 7.975326e-54 | -8.615850e-47 |
| Msa0298240 | Msa0407870 | 0.800778 | 1.228566e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407870 | MtrunA17_Chr3g0098291 | 66.452 | 155 | 50 | 2 | 14 | 166 | 1 | 155 | 2.44e-65 | 200 |
| Msa0407870 | MtrunA17_Chr3g0098521 | 70.161 | 124 | 37 | 0 | 44 | 167 | 1 | 124 | 6.93e-58 | 178 |
| Msa0407870 | MtrunA17_Chr3g0098491 | 72.881 | 118 | 32 | 0 | 44 | 161 | 1 | 118 | 1.57e-57 | 177 |
| Msa0407870 | MtrunA17_Chr3g0102001 | 42.424 | 132 | 74 | 2 | 38 | 167 | 21 | 152 | 3.65e-27 | 107 |
| Msa0407870 | MtrunA17_Chr5g0439021 | 39.683 | 126 | 68 | 2 | 41 | 161 | 25 | 147 | 1.34e-23 | 92.0 |
| Msa0407870 | MtrunA17_Chr3g0098541 | 48.039 | 102 | 52 | 1 | 67 | 167 | 5 | 106 | 1.79e-23 | 94.7 |
| Msa0407870 | MtrunA17_Chr5g0439071 | 44.248 | 113 | 59 | 2 | 41 | 150 | 25 | 136 | 2.96e-21 | 89.7 |
| Msa0407870 | MtrunA17_Chr5g0439061 | 39.583 | 144 | 75 | 4 | 41 | 174 | 25 | 166 | 1.81e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTAGAGTCCCAATAAAA+AGG | 0.231202 | 3_2:+47017823 | Msa0407870:CDS |
| TCAGGCTGAATCATAGAATT+AGG | 0.302724 | 3_2:-47017320 | None:intergenic |
| ATAGCAAGATTGAGATCATT+TGG | 0.331887 | 3_2:-47017917 | None:intergenic |
| CTGTGCTTGCACGCCATAAA+AGG | 0.343353 | 3_2:+47017867 | Msa0407870:CDS |
| GAATGAAAATAAGAAGAATA+AGG | 0.349218 | 3_2:-47017233 | None:intergenic |
| TGAAACTTAATCTTAGAGTT+AGG | 0.353782 | 3_2:-47017281 | None:intergenic |
| TAAGTTTCAAACTTCCGAAA+TGG | 0.365986 | 3_2:+47017256 | Msa0407870:exon |
| CTTAGAGTTAGGATCCATTT+CGG | 0.385934 | 3_2:-47017270 | None:intergenic |
| CATAGAATTAGGATCCATTT+CGG | 0.411404 | 3_2:-47017309 | None:intergenic |
| TAAGTTTCAACCCACCGAAA+TGG | 0.417432 | 3_2:+47017295 | Msa0407870:CDS |
| TAGCAAGATTGAGATCATTT+GGG | 0.422742 | 3_2:-47017916 | None:intergenic |
| CTTCACCTTGCAGCATATAG+AGG | 0.427598 | 3_2:+47017747 | Msa0407870:CDS |
| CTCTTGAAATTCTTGCTACT+AGG | 0.427955 | 3_2:+47018185 | Msa0407870:three_prime_UTR |
| AGTTTGTAATGGAAGACAAA+TGG | 0.447631 | 3_2:+47017535 | Msa0407870:CDS |
| CGTGTTCCGCGAGTTTGTAA+TGG | 0.455705 | 3_2:+47017524 | Msa0407870:CDS |
| AATAAGGATCAATGAGAGAT+GGG | 0.462738 | 3_2:-47017217 | None:intergenic |
| ACCGAACATTTCTCTATGAA+TGG | 0.471652 | 3_2:-47017972 | None:intergenic |
| GAATAAGGATCAATGAGAGA+TGG | 0.481962 | 3_2:-47017218 | None:intergenic |
| GCCATTCATAGAGAAATGTT+CGG | 0.497959 | 3_2:+47017971 | Msa0407870:three_prime_UTR |
| GATCAATGAGAGATGGGTAG+TGG | 0.515618 | 3_2:-47017211 | None:intergenic |
| GTTTGTAATGGAAGACAAAT+GGG | 0.518683 | 3_2:+47017536 | Msa0407870:CDS |
| ATGAATGGCAACGTGAAGAA+TGG | 0.524484 | 3_2:-47017957 | None:intergenic |
| GTACCATCTTGAAAGTCATA+AGG | 0.546594 | 3_2:-47017362 | None:intergenic |
| GTACCTTATGACTTTCAAGA+TGG | 0.546774 | 3_2:+47017359 | Msa0407870:CDS |
| AGTATGTGTAAATGTATCGT+TGG | 0.546925 | 3_2:+47017777 | Msa0407870:CDS |
| GTCGTTATTTCAAAACCACT+TGG | 0.548382 | 3_2:-47017705 | None:intergenic |
| CGCTCTACAGAGGACGAACA+TGG | 0.548818 | 3_2:+47018154 | Msa0407870:three_prime_UTR |
| CATTACAAACTCGCGGAACA+CGG | 0.552796 | 3_2:-47017523 | None:intergenic |
| CTATATGCTGCAAGGTGAAG+AGG | 0.554034 | 3_2:-47017744 | None:intergenic |
| GAATTAGGATCCATTTCGGT+GGG | 0.559223 | 3_2:-47017305 | None:intergenic |
| AAATTGATGTAGGTAAAGAA+AGG | 0.583759 | 3_2:-47017891 | None:intergenic |
| TGAATCCTCTATATGCTGCA+AGG | 0.593278 | 3_2:-47017752 | None:intergenic |
| CAATCTTGCTATGAATAACG+AGG | 0.598611 | 3_2:+47017928 | Msa0407870:exon |
| AGAATTAGGATCCATTTCGG+TGG | 0.599853 | 3_2:-47017306 | None:intergenic |
| CTAGTAGCAAGAATTTCAAG+AGG | 0.608826 | 3_2:-47018184 | None:intergenic |
| GTAAAGCATAATGATCCAAG+TGG | 0.651657 | 3_2:+47017690 | Msa0407870:CDS |
| TGTCTTCCATTACAAACTCG+CGG | 0.659366 | 3_2:-47017530 | None:intergenic |
| AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_2:+47017617 | Msa0407870:CDS |
| AATCTTGCTATGAATAACGA+GGG | 0.709353 | 3_2:+47017929 | Msa0407870:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTATCAAGTTT+TGG | - | chr3_2:47018041-47018060 | None:intergenic | 10.0% |
| !!! | AAATATTTTTTATCAAGTTT+TGG | - | chr3_2:47018041-47018060 | None:intergenic | 10.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | - | chr3_2:47017455-47017474 | None:intergenic | 15.0% |
| !!! | TTTTCACAAGATAAAAATAA+AGG | + | chr3_2:47017593-47017612 | Msa0407870:CDS | 15.0% |
| !! | TTTCACAAGATAAAAATAAA+GGG | + | chr3_2:47017594-47017613 | Msa0407870:CDS | 15.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | - | chr3_2:47017455-47017474 | None:intergenic | 15.0% |
| !!! | TTTTCACAAGATAAAAATAA+AGG | + | chr3_2:47017593-47017612 | Msa0407870:CDS | 15.0% |
| !! | TTTCACAAGATAAAAATAAA+GGG | + | chr3_2:47017594-47017613 | Msa0407870:CDS | 15.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | - | chr3_2:47017236-47017255 | None:intergenic | 20.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | - | chr3_2:47017236-47017255 | None:intergenic | 20.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | - | chr3_2:47017284-47017303 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | + | chr3_2:47017389-47017408 | Msa0407870:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | - | chr3_2:47017452-47017471 | None:intergenic | 25.0% |
| ! | AAGATAAAAATAAAGGGAAG+AGG | + | chr3_2:47017600-47017619 | Msa0407870:CDS | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | + | chr3_2:47017786-47017805 | Msa0407870:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | - | chr3_2:47017894-47017913 | None:intergenic | 25.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | - | chr3_2:47017284-47017303 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | + | chr3_2:47017389-47017408 | Msa0407870:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | - | chr3_2:47017452-47017471 | None:intergenic | 25.0% |
| ! | AAGATAAAAATAAAGGGAAG+AGG | + | chr3_2:47017600-47017619 | Msa0407870:CDS | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | + | chr3_2:47017786-47017805 | Msa0407870:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | - | chr3_2:47017894-47017913 | None:intergenic | 25.0% |
| AATAAGGATCAATGAGAGAT+GGG | - | chr3_2:47017220-47017239 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | + | chr3_2:47017256-47017275 | Msa0407870:exon | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | - | chr3_2:47017312-47017331 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | - | chr3_2:47017341-47017360 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | - | chr3_2:47017399-47017418 | None:intergenic | 30.0% | |
| ! | AGTTTGTAATGGAAGACAAA+TGG | + | chr3_2:47017535-47017554 | Msa0407870:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | + | chr3_2:47017536-47017555 | Msa0407870:CDS | 30.0% |
| AGTATGTGTAAATGTATCGT+TGG | + | chr3_2:47017777-47017796 | Msa0407870:CDS | 30.0% | |
| TGATTAGAGTCCCAATAAAA+AGG | + | chr3_2:47017823-47017842 | Msa0407870:CDS | 30.0% | |
| GATTAGAGTCCCAATAAAAA+GGG | + | chr3_2:47017824-47017843 | Msa0407870:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | - | chr3_2:47017904-47017923 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | - | chr3_2:47017919-47017938 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | - | chr3_2:47017920-47017939 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | + | chr3_2:47017929-47017948 | Msa0407870:exon | 30.0% |
| AATAAGGATCAATGAGAGAT+GGG | - | chr3_2:47017220-47017239 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | + | chr3_2:47017256-47017275 | Msa0407870:exon | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | - | chr3_2:47017312-47017331 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | - | chr3_2:47017341-47017360 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | - | chr3_2:47017399-47017418 | None:intergenic | 30.0% | |
| ! | AGTTTGTAATGGAAGACAAA+TGG | + | chr3_2:47017535-47017554 | Msa0407870:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | + | chr3_2:47017536-47017555 | Msa0407870:CDS | 30.0% |
| AGTATGTGTAAATGTATCGT+TGG | + | chr3_2:47017777-47017796 | Msa0407870:CDS | 30.0% | |
| TGATTAGAGTCCCAATAAAA+AGG | + | chr3_2:47017823-47017842 | Msa0407870:CDS | 30.0% | |
| GATTAGAGTCCCAATAAAAA+GGG | + | chr3_2:47017824-47017843 | Msa0407870:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | - | chr3_2:47017904-47017923 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | - | chr3_2:47017919-47017938 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | - | chr3_2:47017920-47017939 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | + | chr3_2:47017929-47017948 | Msa0407870:exon | 30.0% |
| GAATAAGGATCAATGAGAGA+TGG | - | chr3_2:47017221-47017240 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | - | chr3_2:47017273-47017292 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | - | chr3_2:47017323-47017342 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | + | chr3_2:47017359-47017378 | Msa0407870:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | - | chr3_2:47017365-47017384 | None:intergenic | 35.0% | |
| ! | AAGTTTTACTCTCTCTTCGT+CGG | - | chr3_2:47017655-47017674 | None:intergenic | 35.0% |
| GTAAAGCATAATGATCCAAG+TGG | + | chr3_2:47017690-47017709 | Msa0407870:CDS | 35.0% | |
| ! | GTCGTTATTTCAAAACCACT+TGG | - | chr3_2:47017708-47017727 | None:intergenic | 35.0% |
| TCGTTGGAAAAAATGGTGAA+AGG | + | chr3_2:47017793-47017812 | Msa0407870:CDS | 35.0% | |
| ! | GGTGTTTCTCCCTTTTTATT+GGG | - | chr3_2:47017836-47017855 | None:intergenic | 35.0% |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | - | chr3_2:47017883-47017902 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | + | chr3_2:47017928-47017947 | Msa0407870:exon | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | + | chr3_2:47017971-47017990 | Msa0407870:three_prime_UTR | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | - | chr3_2:47017975-47017994 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | + | chr3_2:47018094-47018113 | Msa0407870:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | - | chr3_2:47018187-47018206 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | + | chr3_2:47018185-47018204 | Msa0407870:three_prime_UTR | 35.0% | |
| GAATAAGGATCAATGAGAGA+TGG | - | chr3_2:47017221-47017240 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | - | chr3_2:47017273-47017292 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | - | chr3_2:47017323-47017342 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | + | chr3_2:47017359-47017378 | Msa0407870:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | - | chr3_2:47017365-47017384 | None:intergenic | 35.0% | |
| ! | AAGTTTTACTCTCTCTTCGT+CGG | - | chr3_2:47017655-47017674 | None:intergenic | 35.0% |
| GTAAAGCATAATGATCCAAG+TGG | + | chr3_2:47017690-47017709 | Msa0407870:CDS | 35.0% | |
| ! | GTCGTTATTTCAAAACCACT+TGG | - | chr3_2:47017708-47017727 | None:intergenic | 35.0% |
| TCGTTGGAAAAAATGGTGAA+AGG | + | chr3_2:47017793-47017812 | Msa0407870:CDS | 35.0% | |
| ! | GGTGTTTCTCCCTTTTTATT+GGG | - | chr3_2:47017836-47017855 | None:intergenic | 35.0% |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | - | chr3_2:47017883-47017902 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | + | chr3_2:47017928-47017947 | Msa0407870:exon | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | + | chr3_2:47017971-47017990 | Msa0407870:three_prime_UTR | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | - | chr3_2:47017975-47017994 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | + | chr3_2:47018094-47018113 | Msa0407870:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | - | chr3_2:47018187-47018206 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | + | chr3_2:47018185-47018204 | Msa0407870:three_prime_UTR | 35.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | + | chr3_2:47017295-47017314 | Msa0407870:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | - | chr3_2:47017308-47017327 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | - | chr3_2:47017309-47017328 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | - | chr3_2:47017533-47017552 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | + | chr3_2:47017617-47017636 | Msa0407870:CDS | 40.0% | |
| TGAATCCTCTATATGCTGCA+AGG | - | chr3_2:47017755-47017774 | None:intergenic | 40.0% | |
| ! | GGGTGTTTCTCCCTTTTTAT+TGG | - | chr3_2:47017837-47017856 | None:intergenic | 40.0% |
| TGCAAGCACAGCACAAAAAA+GGG | - | chr3_2:47017858-47017877 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | - | chr3_2:47017960-47017979 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | + | chr3_2:47018099-47018118 | Msa0407870:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | + | chr3_2:47018144-47018163 | Msa0407870:three_prime_UTR | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | - | chr3_2:47018148-47018167 | None:intergenic | 40.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | + | chr3_2:47017295-47017314 | Msa0407870:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | - | chr3_2:47017308-47017327 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | - | chr3_2:47017309-47017328 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | - | chr3_2:47017533-47017552 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | + | chr3_2:47017617-47017636 | Msa0407870:CDS | 40.0% | |
| TGAATCCTCTATATGCTGCA+AGG | - | chr3_2:47017755-47017774 | None:intergenic | 40.0% | |
| ! | GGGTGTTTCTCCCTTTTTAT+TGG | - | chr3_2:47017837-47017856 | None:intergenic | 40.0% |
| TGCAAGCACAGCACAAAAAA+GGG | - | chr3_2:47017858-47017877 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | - | chr3_2:47017960-47017979 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | + | chr3_2:47018099-47018118 | Msa0407870:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | + | chr3_2:47018144-47018163 | Msa0407870:three_prime_UTR | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | - | chr3_2:47018148-47018167 | None:intergenic | 40.0% | |
| GATCAATGAGAGATGGGTAG+TGG | - | chr3_2:47017214-47017233 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | - | chr3_2:47017526-47017545 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | - | chr3_2:47017747-47017766 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | + | chr3_2:47017747-47017766 | Msa0407870:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+GGG | - | chr3_2:47017857-47017876 | None:intergenic | 45.0% | |
| GTGCAAGCACAGCACAAAAA+AGG | - | chr3_2:47017859-47017878 | None:intergenic | 45.0% | |
| GATCAATGAGAGATGGGTAG+TGG | - | chr3_2:47017214-47017233 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | - | chr3_2:47017526-47017545 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | - | chr3_2:47017747-47017766 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | + | chr3_2:47017747-47017766 | Msa0407870:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+GGG | - | chr3_2:47017857-47017876 | None:intergenic | 45.0% | |
| GTGCAAGCACAGCACAAAAA+AGG | - | chr3_2:47017859-47017878 | None:intergenic | 45.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | + | chr3_2:47017524-47017543 | Msa0407870:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | + | chr3_2:47017867-47017886 | Msa0407870:CDS | 50.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | + | chr3_2:47017524-47017543 | Msa0407870:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | + | chr3_2:47017867-47017886 | Msa0407870:CDS | 50.0% | |
| CGCTCTACAGAGGACGAACA+TGG | + | chr3_2:47018154-47018173 | Msa0407870:three_prime_UTR | 55.0% | |
| CGCTCTACAGAGGACGAACA+TGG | + | chr3_2:47018154-47018173 | Msa0407870:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47017211 | 47018244 | 47017211 | ID=Msa0407870;Name=Msa0407870 |
| chr3_2 | mRNA | 47017211 | 47018244 | 47017211 | ID=Msa0407870-mRNA-1;Parent=Msa0407870;Name=Msa0407870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=64|1|1|1|0.5|0.33|3|180|175 |
| chr3_2 | exon | 47017211 | 47017380 | 47017211 | ID=Msa0407870-mRNA-1:exon:9043;Parent=Msa0407870-mRNA-1 |
| chr3_2 | exon | 47017520 | 47017992 | 47017520 | ID=Msa0407870-mRNA-1:exon:9044;Parent=Msa0407870-mRNA-1 |
| chr3_2 | exon | 47018116 | 47018244 | 47018116 | ID=Msa0407870-mRNA-1:exon:9045;Parent=Msa0407870-mRNA-1 |
| chr3_2 | five_prime_UTR | 47017211 | 47017274 | 47017211 | ID=Msa0407870-mRNA-1:five_prime_utr;Parent=Msa0407870-mRNA-1 |
| chr3_2 | CDS | 47017275 | 47017380 | 47017275 | ID=Msa0407870-mRNA-1:cds;Parent=Msa0407870-mRNA-1 |
| chr3_2 | CDS | 47017520 | 47017941 | 47017520 | ID=Msa0407870-mRNA-1:cds;Parent=Msa0407870-mRNA-1 |
| chr3_2 | three_prime_UTR | 47017942 | 47017992 | 47017942 | ID=Msa0407870-mRNA-1:three_prime_utr;Parent=Msa0407870-mRNA-1 |
| chr3_2 | three_prime_UTR | 47018116 | 47018244 | 47018116 | ID=Msa0407870-mRNA-1:three_prime_utr;Parent=Msa0407870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
