AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142200 MtrunA17_Chr3g0098291 64.516 155 51 3 34 185 1 154 1.20e-61 191
Msa0142200 MtrunA17_Chr3g0098491 75.424 118 29 0 64 181 1 118 2.20e-58 180
Msa0142200 MtrunA17_Chr3g0098521 73.109 119 32 0 64 182 1 119 1.65e-57 178
Msa0142200 MtrunA17_Chr3g0102001 45.038 131 70 2 59 187 22 152 2.06e-27 108
Msa0142200 MtrunA17_Chr3g0098541 49.020 102 51 1 87 187 5 106 3.27e-23 94.7
Msa0142200 MtrunA17_Chr5g0439021 38.211 123 74 1 61 181 25 147 2.23e-21 86.7
Msa0142200 MtrunA17_Chr5g0439071 38.889 126 69 2 61 181 25 147 2.56e-19 84.7
Msa0142200 MtrunA17_Chr5g0439061 40.458 131 66 4 61 181 25 153 6.55e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 537 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTAATTAGATTTCTATTT+TGG 0.124656 1_4:+1005726 Msa0142200:three_prime_UTR
GCAGGTTGTCCTTCGAAATT+TGG 0.162696 1_4:-1005108 None:intergenic
TTATCAATTTAGAGCCTTAA+TGG 0.188802 1_4:+1005679 Msa0142200:three_prime_UTR
GCAGGCTGAATCGTAGAATT+AGG 0.234892 1_4:-995162 None:intergenic
TGTTTACCTCTCACATTCTA+TGG 0.241176 1_4:+1005390 Msa0142200:three_prime_UTR
AATTATTTAATTAGTTGATA+TGG 0.243103 1_4:+1005755 Msa0142200:three_prime_UTR
ATTTGCCCACATAATGATAT+TGG 0.261863 1_4:-1005630 None:intergenic
ATTTGATCACTAATCCATTA+AGG 0.270996 1_4:-1005693 None:intergenic
AACCCCAGGTGAAATCTTTA+AGG 0.271604 1_4:+1004942 Msa0142200:three_prime_UTR
ATGTTCATTTCTTTCATTGC+TGG 0.288747 1_4:+1005300 Msa0142200:three_prime_UTR
TTCTCTATATGTTCGTTGAT+TGG 0.306728 1_4:+1005141 Msa0142200:three_prime_UTR
AGTGATCAAATTAAGTAATA+AGG 0.307382 1_4:+1005705 Msa0142200:three_prime_UTR
ACATCTTCATCTTCATTTGC+AGG 0.309830 1_4:-995180 None:intergenic
AAGTGGCGTAGTTGAAATTA+TGG 0.312736 1_4:+1003650 Msa0142200:three_prime_UTR
ATAGCAAGATTGAGATCATT+TGG 0.329448 1_4:-995781 None:intergenic
CTTCTTTGTTGCTTCTATGA+TGG 0.336687 1_4:-1004915 None:intergenic
CTGTGCTTGCACGCCATAAA+AGG 0.343353 1_4:+995732 Msa0142200:CDS
CGTAGAATTAGGATTCATTT+CGG 0.350085 1_4:-995151 None:intergenic
TGGATTGAAACTTATGAGTT+TGG 0.354909 1_4:+1005528 Msa0142200:three_prime_UTR
TGAGGCTGAATCATAGAATA+AGG 0.358682 1_4:-995120 None:intergenic
CATTGTTAGAGTTAGTTTCA+TGG 0.358694 1_4:-1003848 None:intergenic
ATAGAACAAGATACCATTCT+TGG 0.368304 1_4:-1005352 None:intergenic
AACACTGCTTGGAGGATATC+TGG 0.368356 1_4:+1004031 Msa0142200:three_prime_UTR
AAATGTTTGTATTCACCATA+TGG 0.371774 1_4:+1001394 Msa0142200:three_prime_UTR
GATCAAGATATAAAGGAAAC+TGG 0.372934 1_4:-1005419 None:intergenic
TTGACAAGATCAAGATATAA+AGG 0.379053 1_4:-1005426 None:intergenic
CTTTGATTTCCTTCTCCCAC+TGG 0.387492 1_4:-1003570 None:intergenic
GTTGTTGAGGGTTGTGGAAG+GGG 0.388480 1_4:+1003912 Msa0142200:three_prime_UTR
AAGGTGTTTCTGTCAAAGTC+TGG 0.394198 1_4:+999443 Msa0142200:intron
ATTTATTATGTTTAGAGTAC+TGG 0.399543 1_4:+1005576 Msa0142200:three_prime_UTR
CCGCAAGTTGTTGAGGGTTG+TGG 0.402551 1_4:+1003906 Msa0142200:three_prime_UTR
TCCTCCTTAAAGATTTCACC+TGG 0.410908 1_4:-1004946 None:intergenic
AAAACTAAAATTAAATTGTA+TGG 0.427000 1_4:+999472 Msa0142200:three_prime_UTR
CTTCACCTTGCAGCATATAG+AGG 0.427598 1_4:+995612 Msa0142200:CDS
TAGCAAGATTGAGATCATTT+GGG 0.431676 1_4:-995780 None:intergenic
CATAGAATAAGGATTCATTT+CGG 0.434907 1_4:-995109 None:intergenic
CTCTTGAAATGCTTGCTACT+AGG 0.435243 1_4:+996103 Msa0142200:three_prime_UTR
CCTGATTCATCATTTCCTCC+AGG 0.439349 1_4:-1005081 None:intergenic
GGCGTCTCCTTTGCTACATC+AGG 0.443396 1_4:+1005051 Msa0142200:three_prime_UTR
GTACCTTATGACTATCTAGA+TGG 0.447562 1_4:+995201 Msa0142200:CDS
AGATGCTGCCAAGTGTAAAA+TGG 0.450627 1_4:-1003990 None:intergenic
ATGTTTAGAGTACTGGTTGT+TGG 0.455404 1_4:+1005583 Msa0142200:three_prime_UTR
CTTCTATGATGGTAATGATC+TGG 0.456056 1_4:-1004904 None:intergenic
AGCTTAACACCCTTGATGCT+TGG 0.460764 1_4:-1005474 None:intergenic
CATAAATCAACAAGTTGATA+AGG 0.463848 1_4:+1003958 Msa0142200:three_prime_UTR
CCTGGAGGAAATGATGAATC+AGG 0.466439 1_4:+1005081 Msa0142200:three_prime_UTR
AATATTCCAATATCATTATG+TGG 0.467329 1_4:+1005624 Msa0142200:three_prime_UTR
ACCGAACATTTCTCTATGAA+TGG 0.471652 1_4:-995836 None:intergenic
GCTACATCAGGCAGTGTCCC+TGG 0.477028 1_4:+1005063 Msa0142200:three_prime_UTR
AGTATGTGTGAATGTATCAT+TGG 0.478984 1_4:+995642 Msa0142200:CDS
ACCATGTTCTCCGTGATCAA+AGG 0.483603 1_4:-1002069 None:intergenic
CCCTTTGATCACGGAGAACA+TGG 0.487030 1_4:+1002068 Msa0142200:three_prime_UTR
CCACACATGTACGACTGATA+AGG 0.487600 1_4:-1002035 None:intergenic
TTAACACCCTTGATGCTTGG+TGG 0.487852 1_4:-1005471 None:intergenic
CGAGTTCCGCGAGTGGGTAA+TGG 0.492725 1_4:+995389 Msa0142200:CDS
CAAACTTAGGGGCAATAAAG+AGG 0.493684 1_4:+1001958 Msa0142200:intron
CCATGTTCTCCGTGATCAAA+GGG 0.493736 1_4:-1002068 None:intergenic
GTGGGTAATGGAAGACGATT+GGG 0.496127 1_4:+995401 Msa0142200:CDS
CTCCTTAAAGATTTCACCTG+GGG 0.497170 1_4:-1004944 None:intergenic
GCCATTCATAGAGAAATGTT+CGG 0.497959 1_4:+995835 Msa0142200:three_prime_UTR
AGAGCTTAATTCAAAAGTAA+AGG 0.498132 1_4:+1003674 Msa0142200:three_prime_UTR
TTTCATCACCAAGTAAAAGA+TGG 0.498695 1_4:+1001427 Msa0142200:three_prime_UTR
TTCGAGAAGTGAGTATAGAA+AGG 0.498713 1_4:-1005197 None:intergenic
AGGCCGAAAAGAAGTTTCAA+TGG 0.501753 1_4:-1005249 None:intergenic
TGATTAAAGTAAACAATGAA+AGG 0.503500 1_4:+995688 Msa0142200:CDS
ACAGATAAATATACCAAGAA+TGG 0.504865 1_4:+1005339 Msa0142200:three_prime_UTR
GTTGTAGCAGCACTCGTCGC+AGG 0.505518 1_4:+1005030 Msa0142200:three_prime_UTR
TACAATGTTGATGAAAAGAA+AGG 0.506004 1_4:+1001309 Msa0142200:three_prime_UTR
CGCTCTATGGAGGACGAACA+TGG 0.507160 1_4:+996072 Msa0142200:three_prime_UTR
GATTAAAGTAAACAATGAAA+GGG 0.508056 1_4:+995689 Msa0142200:CDS
AATCTTGCTATCAATAAAGT+TGG 0.509615 1_4:+995793 Msa0142200:three_prime_UTR
AGTTGTTGAGGGTTGTGGAA+GGG 0.513073 1_4:+1003911 Msa0142200:three_prime_UTR
AGAAATGAACATGGCAACAA+TGG 0.515982 1_4:-1005289 None:intergenic
ATTGCATCAGAATTATCAAA+TGG 0.517462 1_4:+1003738 Msa0142200:three_prime_UTR
CTGATTCATCATTTCCTCCA+GGG 0.517799 1_4:-1005080 None:intergenic
AGTGGGTAATGGAAGACGAT+TGG 0.517975 1_4:+995400 Msa0142200:CDS
ACACCCTTGATGCTTGGTGG+TGG 0.521165 1_4:-1005468 None:intergenic
TGAAAACAGGATTTGCCATA+TGG 0.523649 1_4:-1001409 None:intergenic
AACACAACGAAAACACTGCT+TGG 0.527042 1_4:+1004020 Msa0142200:three_prime_UTR
ATGAATGGCAACGTGAAGAA+TGG 0.528135 1_4:-995821 None:intergenic
AAAACTATGTAGGTAAAGAA+AGG 0.528462 1_4:-995756 None:intergenic
AAGTTGTTGAGGGTTGTGGA+AGG 0.534805 1_4:+1003910 Msa0142200:three_prime_UTR
TAGACAACCGCAAGTTGTTG+AGG 0.535533 1_4:+1003899 Msa0142200:three_prime_UTR
AGACAACCGCAAGTTGTTGA+GGG 0.536887 1_4:+1003900 Msa0142200:three_prime_UTR
GAATAAGGATTCATTTCGGA+AGG 0.543885 1_4:-995105 None:intergenic
ATAGAGAATACTTCAAATGC+AGG 0.545958 1_4:-1005126 None:intergenic
CATCATAGAAGCAACAAAGA+AGG 0.547820 1_4:+1004916 Msa0142200:three_prime_UTR
GTCGTTATTTCAAAACCACT+TGG 0.548382 1_4:-995570 None:intergenic
GAATGTGAGAGGTAAACAAA+TGG 0.549126 1_4:-1005385 None:intergenic
TATCAGTCGTACATGTGTGG+TGG 0.552476 1_4:+1002038 Msa0142200:three_prime_UTR
CTATATGCTGCAAGGTGAAG+AGG 0.554034 1_4:-995609 None:intergenic
GTAAAGGCATGTGACAAGAA+AGG 0.554291 1_4:+1003690 Msa0142200:three_prime_UTR
ATGGTCTACTCAGTCATGGT+GGG 0.554564 1_4:+1001446 Msa0142200:three_prime_UTR
AAATCAAATCCAGTGGGAGA+AGG 0.558115 1_4:+1003561 Msa0142200:three_prime_UTR
CCACAACCCTCAACAACTTG+CGG 0.560627 1_4:-1003906 None:intergenic
GGTGCCACCACCAAGCATCA+AGG 0.560692 1_4:+1005464 Msa0142200:three_prime_UTR
AGGTGTTTCTGTCAAAGTCT+GGG 0.560700 1_4:+999444 Msa0142200:intron
AGCTGCCGAGTTCCGCGAGT+GGG 0.561779 1_4:+995383 Msa0142200:intron
GGGAGAAGGAAATCAAAGAA+TGG 0.562490 1_4:+1003575 Msa0142200:three_prime_UTR
ATACCATCTAGATAGTCATA+AGG 0.565626 1_4:-995204 None:intergenic
ACAACGAAAACACTGCTTGG+AGG 0.565861 1_4:+1004023 Msa0142200:three_prime_UTR
TATTTGCTTGCAGCAAAACA+TGG 0.566438 1_4:+1003777 Msa0142200:three_prime_UTR
ACTCAACATGAGTGGATGTC+CGG 0.566795 1_4:+1005778 Msa0142200:three_prime_UTR
CCTCCTTAAAGATTTCACCT+GGG 0.568420 1_4:-1004945 None:intergenic
ATCAGTCGTACATGTGTGGT+GGG 0.568916 1_4:+1002039 Msa0142200:three_prime_UTR
AAACTTAGGGGCAATAAAGA+GGG 0.574713 1_4:+1001959 Msa0142200:intron
GGGATTGATCCCTTTGATCA+CGG 0.574955 1_4:+1002059 Msa0142200:three_prime_UTR
TTCATTTCGGAATCATCTTG+AGG 0.580962 1_4:-995138 None:intergenic
AAATTCAAGACTCAATATGA+AGG 0.580969 1_4:+1002119 Msa0142200:three_prime_UTR
CATTACCCACTCGCGGAACT+CGG 0.582026 1_4:-995388 None:intergenic
TTGTTGATTTATGCTGTGAA+AGG 0.582708 1_4:-1003948 None:intergenic
GTGCCACCACCAAGCATCAA+GGG 0.586554 1_4:+1005465 Msa0142200:three_prime_UTR
GACACTGCCTGATGTAGCAA+AGG 0.588124 1_4:-1005058 None:intergenic
TCAAGGGTGTTAAGCTGTAG+AGG 0.590773 1_4:+1005481 Msa0142200:three_prime_UTR
TGAATCCTCTATATGCTGCA+AGG 0.593278 1_4:-995617 None:intergenic
GTGGGACATCAAGTGGTACA+AGG 0.594742 1_4:+1004072 Msa0142200:three_prime_UTR
GATGTCCCACATCATTTGCA+TGG 0.598842 1_4:-1004059 None:intergenic
TGTCAAAGTTACGTGGAGGA+AGG 0.603346 1_4:+1005443 Msa0142200:three_prime_UTR
CTAGTAGCAAGCATTTCAAG+AGG 0.607759 1_4:-996102 None:intergenic
ATATTCCAATATCATTATGT+GGG 0.614446 1_4:+1005625 Msa0142200:three_prime_UTR
AGAATTATCAAATGGCACAA+AGG 0.614974 1_4:+1003746 Msa0142200:three_prime_UTR
TCAGGAAAACCAAATTTCGA+AGG 0.615378 1_4:+1005099 Msa0142200:three_prime_UTR
GATGGTCTACTCAGTCATGG+TGG 0.615693 1_4:+1001445 Msa0142200:three_prime_UTR
AAAGATGGTCTACTCAGTCA+TGG 0.616140 1_4:+1001442 Msa0142200:three_prime_UTR
TTCTAGATAAAAGCATTGAG+TGG 0.628989 1_4:+1004980 Msa0142200:three_prime_UTR
GTGCAGCCATGCAAATGATG+TGG 0.634297 1_4:+1004053 Msa0142200:three_prime_UTR
GTTAAGAAGAAGCACAAATG+TGG 0.639302 1_4:+1001981 Msa0142200:three_prime_UTR
TGGCTACGAAGAGAGAACTT+AGG 0.639379 1_4:-1005269 None:intergenic
GTTGAAGACGCTGCAGACCA+AGG 0.640050 1_4:+999496 Msa0142200:three_prime_UTR
CCTTATCAGTCGTACATGTG+TGG 0.641337 1_4:+1002035 Msa0142200:three_prime_UTR
ATCTTGTCAAAGTTACGTGG+AGG 0.648519 1_4:+1005439 Msa0142200:three_prime_UTR
GTAAAGCATAATGATCCAAG+TGG 0.651657 1_4:+995555 Msa0142200:CDS
TTGATCTTGTCAAAGTTACG+TGG 0.655731 1_4:+1005436 Msa0142200:three_prime_UTR
CCCAGGTGAAATCTTTAAGG+AGG 0.655968 1_4:+1004945 Msa0142200:three_prime_UTR
TGATATGGACTCAACATGAG+TGG 0.668128 1_4:+1005770 Msa0142200:three_prime_UTR
ACAACTCCATAGAATGTGAG+AGG 0.669785 1_4:-1005396 None:intergenic
TGCAGCCATGCAAATGATGT+GGG 0.674334 1_4:+1004054 Msa0142200:three_prime_UTR
AAATGATGTGGGACATCAAG+TGG 0.684085 1_4:+1004065 Msa0142200:three_prime_UTR
TAGCTGCCGAGTTCCGCGAG+TGG 0.684675 1_4:+995382 Msa0142200:intron
TGGTCTACTCAGTCATGGTG+GGG 0.685565 1_4:+1001447 Msa0142200:three_prime_UTR
CGTCTTCCATTACCCACTCG+CGG 0.694968 1_4:-995395 None:intergenic
AAGAGGAACAGCATTACATG+TGG 0.700334 1_4:+995482 Msa0142200:CDS
AGCAATGAAAGAAATGAACA+TGG 0.705741 1_4:-1005298 None:intergenic
ACATCAGGCAGTGTCCCTGG+AGG 0.720913 1_4:+1005066 Msa0142200:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGAAAAATAAGAATA+AGG - chr1_4:995077-995096 None:intergenic 10.0%
!!! AATTTTCACAAATTATTTAA+AGG + chr1_4:996500-996519 Msa0142200:intron 10.0%
!!! ATTTTCACAAATTATTTAAA+GGG + chr1_4:996501-996520 Msa0142200:intron 10.0%
!! AGAATTGAAAAAAAAAAAAA+AGG - chr1_4:998524-998543 None:intergenic 10.0%
!!! TACAATTTAATTTTAGTTTT+TGG - chr1_4:999472-999491 None:intergenic 10.0%
!! AAAACTAAAATTAAATTGTA+TGG + chr1_4:999472-999491 Msa0142200:three_prime_UTR 10.0%
!! AAGTAAAAATTGAATATTAT+TGG + chr1_4:1000941-1000960 Msa0142200:intron 10.0%
!! TTAAATCATGTAAAAATTAA+AGG - chr1_4:1001494-1001513 None:intergenic 10.0%
!!! AAGAACAAAAAAAATATTTT+CGG + chr1_4:1002146-1002165 Msa0142200:intron 10.0%
!! TATATATTACTAAAACAATA+TGG + chr1_4:1002417-1002436 Msa0142200:intron 10.0%
!!! TTTTTTTAAAAAAACACTAA+TGG + chr1_4:1002978-1002997 Msa0142200:intron 10.0%
!!! TTTTTTAAAAAAACACTAAT+GGG + chr1_4:1002979-1002998 Msa0142200:intron 10.0%
!!! TTTTTTTTTCTTTTTGTTTA+AGG + chr1_4:1004335-1004354 Msa0142200:intron 10.0%
!!! AATTATTTAATTAGTTGATA+TGG + chr1_4:1005755-1005774 Msa0142200:three_prime_UTR 10.0%
!! TAATTAATCACAAAAAATGT+CGG - chr1_4:995257-995276 None:intergenic 15.0%
!!! TTTTCACAAGATAAAAATAA+AGG + chr1_4:995458-995477 Msa0142200:CDS 15.0%
!! TTTCACAAGATAAAAATAAA+GGG + chr1_4:995459-995478 Msa0142200:CDS 15.0%
!!! TTTAGATTAAATTTTACCAT+AGG - chr1_4:995943-995962 None:intergenic 15.0%
!!! TTTTGTTAAAATAATTTCGT+AGG + chr1_4:997179-997198 Msa0142200:intron 15.0%
!! TTTGTTAAAATAATTTCGTA+GGG + chr1_4:997180-997199 Msa0142200:intron 15.0%
!!! ATTTTGATTTAGAAAATCAT+TGG - chr1_4:997237-997256 None:intergenic 15.0%
!!! TTATTGACTTTTAAAAATCA+AGG + chr1_4:997261-997280 Msa0142200:intron 15.0%
!!! ATTTGAGTATTTTTAAGAAA+AGG + chr1_4:997663-997682 Msa0142200:intron 15.0%
!!! TTATTCCTAAAATTTAGTTT+GGG - chr1_4:997869-997888 None:intergenic 15.0%
!! TTTATTCCTAAAATTTAGTT+TGG - chr1_4:997870-997889 None:intergenic 15.0%
!!! TGTTCTTTATAAAATTTTGT+TGG + chr1_4:999418-999437 Msa0142200:intron 15.0%
!!! TTATAAAATTTTGTTGGTAA+AGG + chr1_4:999424-999443 Msa0142200:intron 15.0%
!! GTAATCAAATATTATAGAAA+AGG + chr1_4:999697-999716 Msa0142200:intron 15.0%
!!! ATTACTATCATTTTTCATTT+TGG - chr1_4:999747-999766 None:intergenic 15.0%
!! ATAATGAGAAAATAAATGTT+TGG + chr1_4:1000124-1000143 Msa0142200:intron 15.0%
!! AAATCAAAATCAAAGTTAAT+TGG - chr1_4:1000619-1000638 None:intergenic 15.0%
!!! AACTACATTTAATTTTCATA+CGG + chr1_4:1000729-1000748 Msa0142200:intron 15.0%
!! AAATTATTCAATTTATAGCA+CGG + chr1_4:1000773-1000792 Msa0142200:intron 15.0%
!! AACAAAATAAAAAGGAATTA+AGG - chr1_4:1000871-1000890 None:intergenic 15.0%
!! GCATATAAAACAAAATAAAA+AGG - chr1_4:1000879-1000898 None:intergenic 15.0%
!!! TGCTAAATTGTTTAAAATTA+AGG - chr1_4:1001186-1001205 None:intergenic 15.0%
!!! TTTTTACATGATTTAATTTG+TGG + chr1_4:1001498-1001517 Msa0142200:intron 15.0%
!!! TTAATTAATTTTGCAAACTT+AGG + chr1_4:1001945-1001964 Msa0142200:intron 15.0%
!!! TAATTAATTTTGCAAACTTA+GGG + chr1_4:1001946-1001965 Msa0142200:intron 15.0%
!!! GATTATTTTCATATTTTTAG+TGG + chr1_4:1002866-1002885 Msa0142200:intron 15.0%
!! GTATCCTTAAAAAAAATTAA+CGG + chr1_4:1003164-1003183 Msa0142200:intron 15.0%
!! AAAAAAAATGTTTACAATAC+TGG - chr1_4:1004136-1004155 None:intergenic 15.0%
!!! AATAACTTTTTTTTTTGACA+AGG + chr1_4:1004214-1004233 Msa0142200:intron 15.0%
!! TGATTAAAGTAAACAATGAA+AGG + chr1_4:995688-995707 Msa0142200:CDS 20.0%
!! GATTAAAGTAAACAATGAAA+GGG + chr1_4:995689-995708 Msa0142200:CDS 20.0%
!!! GATATATACAGTAAGAATTT+TGG - chr1_4:995983-996002 None:intergenic 20.0%
!!! CGGTTCTTAATTTTAATTTT+TGG + chr1_4:996668-996687 Msa0142200:intron 20.0%
!! TATCAAAAAGTGATTGAAAA+AGG + chr1_4:996764-996783 Msa0142200:intron 20.0%
!! TTATAGCTAAGTAAGTTTAA+GGG + chr1_4:996848-996867 Msa0142200:intron 20.0%
!!! TTTTAAAAATCAAGGTCTTT+TGG + chr1_4:997269-997288 Msa0142200:intron 20.0%
!!! TTTAAAAATCAAGGTCTTTT+GGG + chr1_4:997270-997289 Msa0142200:intron 20.0%
!!! TAAATCTTAGAATTTGAGTT+GGG - chr1_4:997694-997713 None:intergenic 20.0%
!! ATAAATCTTAGAATTTGAGT+TGG - chr1_4:997695-997714 None:intergenic 20.0%
!! TTAAGATTTCCACATTAAAT+TGG + chr1_4:997808-997827 Msa0142200:intron 20.0%
!! AAATCATATCCAATTTAATG+TGG - chr1_4:997820-997839 None:intergenic 20.0%
!!! ATTTACCCAAACTAAATTTT+AGG + chr1_4:997861-997880 Msa0142200:intron 20.0%
!! TTGATGAAAGGTTATTTATA+GGG + chr1_4:998013-998032 Msa0142200:intron 20.0%
!! TCTTTGTCAAAAAAAAATCA+GGG - chr1_4:998121-998140 None:intergenic 20.0%
!! AATACAAGTAACAAAAATCA+GGG - chr1_4:998146-998165 None:intergenic 20.0%
!! TAATACAAGTAACAAAAATC+AGG - chr1_4:998147-998166 None:intergenic 20.0%
!! TCTGACTAATAAAACTAAAA+TGG + chr1_4:998764-998783 Msa0142200:intron 20.0%
!! ATTATATGGAGATTAAAATG+AGG - chr1_4:998962-998981 None:intergenic 20.0%
!! CAAAAGAAAAGTTAATAAAG+AGG + chr1_4:999287-999306 Msa0142200:intron 20.0%
!!! TATTACTGGTTAACTATATA+TGG - chr1_4:1000102-1000121 None:intergenic 20.0%
!! ATATATAGTTAACCAGTAAT+AGG + chr1_4:1000101-1000120 Msa0142200:intron 20.0%
!! ATCATCATGCATAATATTAT+TGG + chr1_4:1000413-1000432 Msa0142200:intron 20.0%
!!! TTGATTTTGATTTTAGCAAA+TGG + chr1_4:1000626-1000645 Msa0142200:intron 20.0%
!! AATTATTCAATTTATAGCAC+GGG + chr1_4:1000774-1000793 Msa0142200:intron 20.0%
!! TAAATATTCTGTTCGAAATT+TGG + chr1_4:1000834-1000853 Msa0142200:intron 20.0%
!! AAATATTCTGTTCGAAATTT+GGG + chr1_4:1000835-1000854 Msa0142200:intron 20.0%
!!! TTGTTTTTGTTGTTGTTAAT+AGG - chr1_4:1001101-1001120 None:intergenic 20.0%
!! GATGTGATCTATTAATTTAA+TGG + chr1_4:1001651-1001670 Msa0142200:intron 20.0%
!!! AATTAATTTTGCAAACTTAG+GGG + chr1_4:1001947-1001966 Msa0142200:intron 20.0%
!! ACTAAAAAATACATGTCTAA+CGG - chr1_4:1002526-1002545 None:intergenic 20.0%
!!! TGACTAACTTTAAAAAAATG+AGG - chr1_4:1002766-1002785 None:intergenic 20.0%
!!! CTTTCCGTTAATTTTTTTTA+AGG - chr1_4:1003171-1003190 None:intergenic 20.0%
!! AAAAAAAATTGTCACATGTA+AGG - chr1_4:1003339-1003358 None:intergenic 20.0%
!!! GACTAGTATTTTAGTTAATT+TGG + chr1_4:1004109-1004128 Msa0142200:intron 20.0%
!! GAATTAAGTTAAACAATCTA+TGG + chr1_4:1004253-1004272 Msa0142200:intron 20.0%
!! GTATTTCCTATTAATTAATG+TGG + chr1_4:1004367-1004386 Msa0142200:intron 20.0%
!!! GGTTGAATTTTATTTATTGA+TGG - chr1_4:1004452-1004471 None:intergenic 20.0%
!!! GTTTTTTTTTTTTCATGAAG+AGG - chr1_4:1004560-1004579 None:intergenic 20.0%
!!! TATTTTATTGTATTTCTGTG+TGG + chr1_4:1005508-1005527 Msa0142200:three_prime_UTR 20.0%
!!! ATTTATTATGTTTAGAGTAC+TGG + chr1_4:1005576-1005595 Msa0142200:three_prime_UTR 20.0%
!! AATATTCCAATATCATTATG+TGG + chr1_4:1005624-1005643 Msa0142200:three_prime_UTR 20.0%
!! ATATTCCAATATCATTATGT+GGG + chr1_4:1005625-1005644 Msa0142200:three_prime_UTR 20.0%
!! AGTGATCAAATTAAGTAATA+AGG + chr1_4:1005705-1005724 Msa0142200:three_prime_UTR 20.0%
! CATAGAATAAGGATTCATTT+CGG - chr1_4:995112-995131 None:intergenic 25.0%
! AGTTATTGTCACAAACAAAT+TGG - chr1_4:995349-995368 None:intergenic 25.0%
! AAGATAAAAATAAAGGGAAG+AGG + chr1_4:995465-995484 Msa0142200:CDS 25.0%
! TCATTGGAAAAAATGATGAA+AGG + chr1_4:995658-995677 Msa0142200:CDS 25.0%
! AAAACTATGTAGGTAAAGAA+AGG - chr1_4:995759-995778 None:intergenic 25.0%
!! AATCTTGCTATCAATAAAGT+TGG + chr1_4:995793-995812 Msa0142200:three_prime_UTR 25.0%
! TGATTTAAGAAATTCTCCTA+TGG + chr1_4:995924-995943 Msa0142200:intron 25.0%
!!! TAATTCCTTTTTTTGAGAGA+TGG + chr1_4:996373-996392 Msa0142200:intron 25.0%
! TTATATCCACTTGGTTAATT+GGG - chr1_4:996416-996435 None:intergenic 25.0%
! TTTATATCCACTTGGTTAAT+TGG - chr1_4:996417-996436 None:intergenic 25.0%
! AGAAAACTAAGACTCAAATA+TGG - chr1_4:996557-996576 None:intergenic 25.0%
!!! TTTTCTATGTAAGTACTGAT+TGG + chr1_4:996571-996590 Msa0142200:intron 25.0%
!!! TTTCTATGTAAGTACTGATT+GGG + chr1_4:996572-996591 Msa0142200:intron 25.0%
! GATTTAGATTAGAACAATCA+TGG + chr1_4:996697-996716 Msa0142200:intron 25.0%
! TGAAATTTAAGAACCACATA+AGG - chr1_4:996732-996751 None:intergenic 25.0%
!!! TCACTTTTTGATATTCACAA+TGG - chr1_4:996757-996776 None:intergenic 25.0%
!!! ATCTTTCTTCTTTTTTCCAT+TGG + chr1_4:996792-996811 Msa0142200:intron 25.0%
! GTTATAGCTAAGTAAGTTTA+AGG + chr1_4:996847-996866 Msa0142200:intron 25.0%
! TAAGTAAGTTTAAGGGAATT+TGG + chr1_4:996855-996874 Msa0142200:intron 25.0%
! CCAAAAAAACAAATTACTGA+GGG - chr1_4:997041-997060 None:intergenic 25.0%
! ACCAAAAAAACAAATTACTG+AGG - chr1_4:997042-997061 None:intergenic 25.0%
!!! TAAGAATTTGTTGGTTATGA+AGG + chr1_4:997113-997132 Msa0142200:intron 25.0%
! AAGAATTTAGTCACAAGATT+TGG + chr1_4:997314-997333 Msa0142200:intron 25.0%
! AAAACAAGAAAATGCTTGAA+TGG - chr1_4:997449-997468 None:intergenic 25.0%
! AACTCTTATCTCATCTAATA+TGG - chr1_4:997599-997618 None:intergenic 25.0%
!!! AAATCTTAGAATTTGAGTTG+GGG - chr1_4:997693-997712 None:intergenic 25.0%
!! TAATAGTGACATTTTGTGTA+AGG - chr1_4:997930-997949 None:intergenic 25.0%
! TACACAAAATGTCACTATTA+TGG + chr1_4:997930-997949 Msa0142200:intron 25.0%
! CTTTCATCAACAAGTAAATA+AGG - chr1_4:998003-998022 None:intergenic 25.0%
!! CTTATTTACTTGTTGATGAA+AGG + chr1_4:998001-998020 Msa0142200:intron 25.0%
!! GTTGATGAAAGGTTATTTAT+AGG + chr1_4:998012-998031 Msa0142200:intron 25.0%
! GTCTTTGTCAAAAAAAAATC+AGG - chr1_4:998122-998141 None:intergenic 25.0%
!! TTTGTTACTTGTATTATTCG+AGG + chr1_4:998151-998170 Msa0142200:intron 25.0%
!! TTGTTACTTGTATTATTCGA+GGG + chr1_4:998152-998171 Msa0142200:intron 25.0%
!!! ATTTGTTCTCATGGATTTTT+TGG + chr1_4:998229-998248 Msa0142200:intron 25.0%
!! TTAGGTATGAGTTTTACATA+TGG + chr1_4:998638-998657 Msa0142200:intron 25.0%
! GACTAATAAAACTAAAATGG+TGG + chr1_4:998767-998786 Msa0142200:intron 25.0%
! TTAATCTCCATATAATCTTC+AGG + chr1_4:998966-998985 Msa0142200:intron 25.0%
!! ATTTGGTATTGAAATAGTTG+TGG - chr1_4:999035-999054 None:intergenic 25.0%
! TACTTTGTAATAACCTCATA+CGG + chr1_4:999159-999178 Msa0142200:intron 25.0%
! AATAGAAGATGAATTACATG+TGG - chr1_4:999201-999220 None:intergenic 25.0%
! ACTATCTAGTAGAAACATAT+GGG - chr1_4:999250-999269 None:intergenic 25.0%
! TACTATCTAGTAGAAACATA+TGG - chr1_4:999251-999270 None:intergenic 25.0%
!! CTTGTCAAATTCATGTATTT+TGG + chr1_4:999328-999347 Msa0142200:intron 25.0%
!!! ACCTTTATTTTGACTACTTT+TGG - chr1_4:999394-999413 None:intergenic 25.0%
! AATTCATTGAAAACTTACCT+TGG - chr1_4:999516-999535 None:intergenic 25.0%
!!! CATTTTTCATTTTGGTTTGA+TGG - chr1_4:999739-999758 None:intergenic 25.0%
! TATTGGTATTGTCATAGATT+AGG - chr1_4:999859-999878 None:intergenic 25.0%
! TGTAATGTTGTCAAATGTAT+AGG - chr1_4:1000025-1000044 None:intergenic 25.0%
!! TTTTCTCATTATCCTATTAC+TGG - chr1_4:1000116-1000135 None:intergenic 25.0%
!!! TTGGATGTTTTGTTCAAATT+AGG + chr1_4:1000143-1000162 Msa0142200:intron 25.0%
! AAATTAATTTAATCCACCGA+GGG - chr1_4:1000205-1000224 None:intergenic 25.0%
!! TAATATTATGCATGATGATG+TGG - chr1_4:1000412-1000431 None:intergenic 25.0%
! TTATGAAGAGTCAAATTTAG+TGG + chr1_4:1000998-1001017 Msa0142200:intron 25.0%
!!! AATTTACTACTTTTTCCAAC+AGG - chr1_4:1001070-1001089 None:intergenic 25.0%
! TTCTCTGCAGTATATATTAT+AGG - chr1_4:1001258-1001277 None:intergenic 25.0%
!! TACAATGTTGATGAAAAGAA+AGG + chr1_4:1001309-1001328 Msa0142200:three_prime_UTR 25.0%
! AAATGTTTGTATTCACCATA+TGG + chr1_4:1001394-1001413 Msa0142200:three_prime_UTR 25.0%
! GTTATTGTCATTCAATCAAT+TGG + chr1_4:1001756-1001775 Msa0142200:intron 25.0%
! TTCTCACTTATTCACTTTAA+AGG - chr1_4:1001794-1001813 None:intergenic 25.0%
! AAATTCAAGACTCAATATGA+AGG + chr1_4:1002119-1002138 Msa0142200:three_prime_UTR 25.0%
!!! TACATTTTTTTTAGCGATGA+AGG - chr1_4:1002383-1002402 None:intergenic 25.0%
! CTAAAAAATACATGTCTAAC+GGG - chr1_4:1002525-1002544 None:intergenic 25.0%
!!! TAGACATGTATTTTTTAGTG+AGG + chr1_4:1002527-1002546 Msa0142200:intron 25.0%
!! TTTTATTATATCAACCCAAC+AGG - chr1_4:1002632-1002651 None:intergenic 25.0%
! GTCAATAGTTCATCTAAATA+GGG - chr1_4:1003093-1003112 None:intergenic 25.0%
! TGTCAATAGTTCATCTAAAT+AGG - chr1_4:1003094-1003113 None:intergenic 25.0%
! TATTTAGATGAACTATTGAC+AGG + chr1_4:1003093-1003112 Msa0142200:intron 25.0%
!!! TTTTAAGGATACTCTTTCTA+GGG - chr1_4:1003156-1003175 None:intergenic 25.0%
!!! TTTTTAAGGATACTCTTTCT+AGG - chr1_4:1003157-1003176 None:intergenic 25.0%
!!! CATGTGACAATTTTTTTTAG+AGG + chr1_4:1003341-1003360 Msa0142200:intron 25.0%
! AAAAAAGAAATCAAATCCAG+TGG + chr1_4:1003554-1003573 Msa0142200:three_prime_UTR 25.0%
! AAAAAGAAATCAAATCCAGT+GGG + chr1_4:1003555-1003574 Msa0142200:three_prime_UTR 25.0%
!! TGAAAAAGATACGACATTTT+TGG + chr1_4:1003617-1003636 Msa0142200:three_prime_UTR 25.0%
! AGAGCTTAATTCAAAAGTAA+AGG + chr1_4:1003674-1003693 Msa0142200:three_prime_UTR 25.0%
! ATTGCATCAGAATTATCAAA+TGG + chr1_4:1003738-1003757 Msa0142200:three_prime_UTR 25.0%
!!! CATAAATCAACAAGTTGATA+AGG + chr1_4:1003958-1003977 Msa0142200:three_prime_UTR 25.0%
!!! TTTCTTTTTGTTTAAGGAAC+TGG + chr1_4:1004341-1004360 Msa0142200:intron 25.0%
!! TAGAATGACTACGTATTTTA+GGG - chr1_4:1004473-1004492 None:intergenic 25.0%
!! ATAGAATGACTACGTATTTT+AGG - chr1_4:1004474-1004493 None:intergenic 25.0%
!!! CTGTTTTAACTATATGTGAA+TGG + chr1_4:1004853-1004872 Msa0142200:intron 25.0%
! ACAGATAAATATACCAAGAA+TGG + chr1_4:1005339-1005358 Msa0142200:three_prime_UTR 25.0%
! TTGACAAGATCAAGATATAA+AGG - chr1_4:1005429-1005448 None:intergenic 25.0%
!! TTATCAATTTAGAGCCTTAA+TGG + chr1_4:1005679-1005698 Msa0142200:three_prime_UTR 25.0%
! ATTTGATCACTAATCCATTA+AGG - chr1_4:1005696-1005715 None:intergenic 25.0%
!! GGCTAATTAGATTTCTATTT+TGG + chr1_4:1005726-1005745 Msa0142200:three_prime_UTR 25.0%
CGTAGAATTAGGATTCATTT+CGG - chr1_4:995154-995173 None:intergenic 30.0%
ATACCATCTAGATAGTCATA+AGG - chr1_4:995207-995226 None:intergenic 30.0%
AGTATGTGTGAATGTATCAT+TGG + chr1_4:995642-995661 Msa0142200:CDS 30.0%
TCATTTGGGAAAAACTATGT+AGG - chr1_4:995769-995788 None:intergenic 30.0%
TAGCAAGATTGAGATCATTT+GGG - chr1_4:995783-995802 None:intergenic 30.0%
ATAGCAAGATTGAGATCATT+TGG - chr1_4:995784-995803 None:intergenic 30.0%
ATTATATTTGCCATACCTGT+TGG - chr1_4:996030-996049 None:intergenic 30.0%
GTAGTAAAAATCAGCTATCA+TGG + chr1_4:996142-996161 Msa0142200:three_prime_UTR 30.0%
CTAGTTTATCGCGTTATTAT+AGG - chr1_4:996330-996349 None:intergenic 30.0%
AACCAAGTGGATATAAATTG+TGG + chr1_4:996420-996439 Msa0142200:intron 30.0%
TACCACAATTTATATCCACT+TGG - chr1_4:996425-996444 None:intergenic 30.0%
! TAGATAATGTATTGGTATGG+CGG - chr1_4:996530-996549 None:intergenic 30.0%
AACTAAGACTCAAATATGGT+GGG - chr1_4:996553-996572 None:intergenic 30.0%
AAACTAAGACTCAAATATGG+TGG - chr1_4:996554-996573 None:intergenic 30.0%
TCATTAGATACGAAGTAGAT+TGG + chr1_4:996639-996658 Msa0142200:intron 30.0%
CATTAGATACGAAGTAGATT+GGG + chr1_4:996640-996659 Msa0142200:intron 30.0%
!!! TTTTTTCCATTGGTTGTTGA+AGG + chr1_4:996802-996821 Msa0142200:intron 30.0%
TTTGAGAGGGAAATTAGTAA+CGG + chr1_4:996928-996947 Msa0142200:intron 30.0%
!!! CCCTCAGTAATTTGTTTTTT+TGG + chr1_4:997038-997057 Msa0142200:intron 30.0%
GTAGTGCTAATACATTATGT+TGG + chr1_4:997060-997079 Msa0142200:intron 30.0%
CTTTCGTATTGTAGTAGTTA+GGG + chr1_4:997089-997108 Msa0142200:intron 30.0%
!! TTATGAAGGTTGTTTTCATG+TGG + chr1_4:997127-997146 Msa0142200:intron 30.0%
! TTGAATGGTCACAAGATTTT+GGG - chr1_4:997434-997453 None:intergenic 30.0%
ATGAGATAAGAGTTGAACAT+GGG + chr1_4:997605-997624 Msa0142200:intron 30.0%
AACCTAGATGTTAGACAATT+TGG + chr1_4:997969-997988 Msa0142200:intron 30.0%
AACCAAATTGTCTAACATCT+AGG - chr1_4:997974-997993 None:intergenic 30.0%
! AAAGGGAGGAATGAAATTTT+TGG + chr1_4:998184-998203 Msa0142200:intron 30.0%
! CTTCTAGAAATTTGTTCTCA+TGG + chr1_4:998220-998239 Msa0142200:intron 30.0%
!!! ATGGATTTTTTGGTTCATCT+AGG + chr1_4:998239-998258 Msa0142200:intron 30.0%
! GAATGTGCGTTATCTTTTTA+AGG + chr1_4:998269-998288 Msa0142200:intron 30.0%
AAATGTTAACATGTGACATC+AGG + chr1_4:998405-998424 Msa0142200:intron 30.0%
AATGTTAACATGTGACATCA+GGG + chr1_4:998406-998425 Msa0142200:intron 30.0%
! TGTCATTTGAACACAAGTTA+AGG - chr1_4:998557-998576 None:intergenic 30.0%
AAACTCATACCTAAAAAGAG+AGG - chr1_4:998632-998651 None:intergenic 30.0%
! AGTTCTTTTGGATAGGAATT+TGG - chr1_4:999052-999071 None:intergenic 30.0%
GTGCTTTATAATTCAGATCT+AGG + chr1_4:999089-999108 Msa0142200:intron 30.0%
GCCAAAAGTAGTCAAAATAA+AGG + chr1_4:999390-999409 Msa0142200:intron 30.0%
TAAACATTACATAACGACCA+TGG - chr1_4:999557-999576 None:intergenic 30.0%
! TAGATTAGGTCTAAAGTTGA+TGG - chr1_4:999845-999864 None:intergenic 30.0%
AATAGTGCAACAATGTCAAA+GGG + chr1_4:999875-999894 Msa0142200:intron 30.0%
! AGATTTTGTTAGTATACACG+TGG - chr1_4:999961-999980 None:intergenic 30.0%
TGTTGTCAAATGTATAGGTT+TGG - chr1_4:1000020-1000039 None:intergenic 30.0%
ATATGGTAGGATGTTGTATT+TGG - chr1_4:1000085-1000104 None:intergenic 30.0%
ACTGGTTAACTATATATGGT+AGG - chr1_4:1000098-1000117 None:intergenic 30.0%
AATTAATTTAATCCACCGAG+GGG - chr1_4:1000204-1000223 None:intergenic 30.0%
CAAATTAATTTAATCCACCG+AGG - chr1_4:1000206-1000225 None:intergenic 30.0%
GTCCAAGTAACTCTAAATAA+AGG + chr1_4:1000290-1000309 Msa0142200:intron 30.0%
! CTCCTTTATTTAGAGTTACT+TGG - chr1_4:1000295-1000314 None:intergenic 30.0%
! TACGCATAAGCTTTCTTTTA+CGG + chr1_4:1000344-1000363 Msa0142200:intron 30.0%
!! ACTTTTCTCCTTGTTTGTTT+TGG - chr1_4:1000475-1000494 None:intergenic 30.0%
!! AGAAAAGTGCTTTAGTTTGA+AGG + chr1_4:1000487-1000506 Msa0142200:intron 30.0%
AACTCATTCATATAGCAATG+TGG - chr1_4:1000701-1000720 None:intergenic 30.0%
! TCGACTAGATTTTATTGCTA+AGG + chr1_4:1001353-1001372 Msa0142200:three_prime_UTR 30.0%
!!! TTTTACTTGGTGATGAAAAC+AGG - chr1_4:1001425-1001444 None:intergenic 30.0%
TTTCATCACCAAGTAAAAGA+TGG + chr1_4:1001427-1001446 Msa0142200:three_prime_UTR 30.0%
ACAAAAACGTTGCAGTATAT+AGG - chr1_4:1001839-1001858 None:intergenic 30.0%
! TACTATCTGAGATAGCAATA+TGG + chr1_4:1002493-1002512 Msa0142200:intron 30.0%
!!! ACATGTATTTTTTAGTGAGG+TGG + chr1_4:1002530-1002549 Msa0142200:intron 30.0%
!!! CATGTATTTTTTAGTGAGGT+GGG + chr1_4:1002531-1002550 Msa0142200:intron 30.0%
! AATTTTCTCCTCTGTATAGT+GGG + chr1_4:1002697-1002716 Msa0142200:intron 30.0%
AGAATTATCAAATGGCACAA+AGG + chr1_4:1003746-1003765 Msa0142200:three_prime_UTR 30.0%
! CATTGTTAGAGTTAGTTTCA+TGG - chr1_4:1003851-1003870 None:intergenic 30.0%
!! TTGTTGATTTATGCTGTGAA+AGG - chr1_4:1003951-1003970 None:intergenic 30.0%
! TGAAAACACCATTTTACACT+TGG + chr1_4:1003982-1004001 Msa0142200:three_prime_UTR 30.0%
! ATTTTGCCGTCGATAATAAT+TGG + chr1_4:1004300-1004319 Msa0142200:intron 30.0%
TACTCTCCAATTATTATCGA+CGG - chr1_4:1004309-1004328 None:intergenic 30.0%
AACATAGATCGTTTGAAAGA+GGG - chr1_4:1004397-1004416 None:intergenic 30.0%
AAACATAGATCGTTTGAAAG+AGG - chr1_4:1004398-1004417 None:intergenic 30.0%
GAGTTACTCTGAATTAAACA+TGG - chr1_4:1004513-1004532 None:intergenic 30.0%
TGTTTCTCTTTAAACTAGCT+AGG + chr1_4:1004818-1004837 Msa0142200:intron 30.0%
!! TTCTAGATAAAAGCATTGAG+TGG + chr1_4:1004980-1004999 Msa0142200:three_prime_UTR 30.0%
ATAGAGAATACTTCAAATGC+AGG - chr1_4:1005129-1005148 None:intergenic 30.0%
TTCTCTATATGTTCGTTGAT+TGG + chr1_4:1005141-1005160 Msa0142200:three_prime_UTR 30.0%
! TTGCCATTGAAACTTCTTTT+CGG + chr1_4:1005246-1005265 Msa0142200:three_prime_UTR 30.0%
AGCAATGAAAGAAATGAACA+TGG - chr1_4:1005301-1005320 None:intergenic 30.0%
ATGTTCATTTCTTTCATTGC+TGG + chr1_4:1005300-1005319 Msa0142200:three_prime_UTR 30.0%
ATAGAACAAGATACCATTCT+TGG - chr1_4:1005355-1005374 None:intergenic 30.0%
GATCAAGATATAAAGGAAAC+TGG - chr1_4:1005422-1005441 None:intergenic 30.0%
TGGATTGAAACTTATGAGTT+TGG + chr1_4:1005528-1005547 Msa0142200:three_prime_UTR 30.0%
ATTTGCCCACATAATGATAT+TGG - chr1_4:1005633-1005652 None:intergenic 30.0%
GAATAAGGATTCATTTCGGA+AGG - chr1_4:995108-995127 None:intergenic 35.0%
TGAGGCTGAATCATAGAATA+AGG - chr1_4:995123-995142 None:intergenic 35.0%
TTCATTTCGGAATCATCTTG+AGG - chr1_4:995141-995160 None:intergenic 35.0%
ACATCTTCATCTTCATTTGC+AGG - chr1_4:995183-995202 None:intergenic 35.0%
GTACCTTATGACTATCTAGA+TGG + chr1_4:995201-995220 Msa0142200:CDS 35.0%
! AAGTTTTACACTCTCTTCGT+CGG - chr1_4:995520-995539 None:intergenic 35.0%
GTAAAGCATAATGATCCAAG+TGG + chr1_4:995555-995574 Msa0142200:CDS 35.0%
! GTCGTTATTTCAAAACCACT+TGG - chr1_4:995573-995592 None:intergenic 35.0%
! GGTAAAGAAAGGTCCTTTTA+TGG - chr1_4:995748-995767 None:intergenic 35.0%
GCCATTCATAGAGAAATGTT+CGG + chr1_4:995835-995854 Msa0142200:three_prime_UTR 35.0%
ACCGAACATTTCTCTATGAA+TGG - chr1_4:995839-995858 None:intergenic 35.0%
! GTATCCAATTTTTCGCTCTA+TGG + chr1_4:996059-996078 Msa0142200:three_prime_UTR 35.0%
GTAAAAATCAGCTATCATGG+TGG + chr1_4:996145-996164 Msa0142200:three_prime_UTR 35.0%
AAGTGACACACACACAAATA+TGG + chr1_4:996189-996208 Msa0142200:intron 35.0%
GTTATTATAGGCTTATTCGG+AGG - chr1_4:996318-996337 None:intergenic 35.0%
CGCGTTATTATAGGCTTATT+CGG - chr1_4:996321-996340 None:intergenic 35.0%
GATGACCATCTCTCAAAAAA+AGG - chr1_4:996381-996400 None:intergenic 35.0%
AGAGATGGTCATCATTCTTA+TGG + chr1_4:996388-996407 Msa0142200:intron 35.0%
! GGGTAGATAATGTATTGGTA+TGG - chr1_4:996533-996552 None:intergenic 35.0%
!! ATGGTGGGTAGATAATGTAT+TGG - chr1_4:996538-996557 None:intergenic 35.0%
ATGGAAGAAATCACCTTATG+TGG + chr1_4:996716-996735 Msa0142200:intron 35.0%
! TAGGAAAGCAAACTTTGAGA+GGG + chr1_4:996915-996934 Msa0142200:intron 35.0%
TTGATCACAAAACTTAGCGA+CGG + chr1_4:996977-996996 Msa0142200:intron 35.0%
CCTAACTACTACAATACGAA+AGG - chr1_4:997091-997110 None:intergenic 35.0%
CCTTTCGTATTGTAGTAGTT+AGG + chr1_4:997088-997107 Msa0142200:intron 35.0%
AGTTAGGGCTAAGAATTTGT+TGG + chr1_4:997104-997123 Msa0142200:intron 35.0%
! CTTGAATGGTCACAAGATTT+TGG - chr1_4:997435-997454 None:intergenic 35.0%
! GTCTACCTATTAGTTGATGT+TGG + chr1_4:997493-997512 Msa0142200:intron 35.0%
GACATCCAACATCAACTAAT+AGG - chr1_4:997501-997520 None:intergenic 35.0%
GATGAGATAAGAGTTGAACA+TGG + chr1_4:997604-997623 Msa0142200:intron 35.0%
GTTGAACATGGGTTTATAAG+TGG + chr1_4:997616-997635 Msa0142200:intron 35.0%
GGAAATCTTAACTCACATCT+AGG - chr1_4:997799-997818 None:intergenic 35.0%
! TAGTGACATTTTGTGTAAGG+CGG - chr1_4:997927-997946 None:intergenic 35.0%
GTGTTCTTAGATGTATAGAG+TGG + chr1_4:998078-998097 Msa0142200:intron 35.0%
AATCAGGGAGTCAAATACAA+AGG - chr1_4:998106-998125 None:intergenic 35.0%
! TTTGGTTCATCTAGGAATCA+TGG + chr1_4:998247-998266 Msa0142200:intron 35.0%
!!! GTGCGTTATCTTTTTAAGGT+TGG + chr1_4:998273-998292 Msa0142200:intron 35.0%
!!! CGTTATCTTTTTAAGGTTGG+TGG + chr1_4:998276-998295 Msa0142200:intron 35.0%
TACCTAAAAAGAGAGGATAC+AGG - chr1_4:998625-998644 None:intergenic 35.0%
GTCACTTCCTGAAGATTATA+TGG - chr1_4:998976-998995 None:intergenic 35.0%
CTATCCAAAAGAACTAGACT+CGG + chr1_4:999057-999076 Msa0142200:intron 35.0%
TATCCAAAAGAACTAGACTC+GGG + chr1_4:999058-999077 Msa0142200:intron 35.0%
! TTCAGATCTAGGATTAACGA+TGG + chr1_4:999100-999119 Msa0142200:intron 35.0%
! TGAAAGAAAAGAAAGCGTGT+GGG - chr1_4:999224-999243 None:intergenic 35.0%
! TTGAAAGAAAAGAAAGCGTG+TGG - chr1_4:999225-999244 None:intergenic 35.0%
CTTTGACATTGTTGCACTAT+TGG - chr1_4:999876-999895 None:intergenic 35.0%
CAATAGTGCAACAATGTCAA+AGG + chr1_4:999874-999893 Msa0142200:intron 35.0%
! CCATGTGGTTTTCAATTACA+AGG - chr1_4:999918-999937 None:intergenic 35.0%
CCTTGTAATTGAAAACCACA+TGG + chr1_4:999915-999934 Msa0142200:intron 35.0%
!! TTGAAAGCATCTTAACCATG+TGG - chr1_4:999933-999952 None:intergenic 35.0%
! TGTATAGGTTTGGTATCTTG+TGG - chr1_4:1000010-1000029 None:intergenic 35.0%
GTAGGATGTTGTATTTGGTT+AGG - chr1_4:1000080-1000099 None:intergenic 35.0%
GTAAAAGAAAGCTTATGCGT+AGG - chr1_4:1000345-1000364 None:intergenic 35.0%
!!! TTTCTCCTTGTTTGTTTTGG+AGG - chr1_4:1000472-1000491 None:intergenic 35.0%
TTTAGCAAATGGTAGTCCTT+CGG + chr1_4:1000637-1000656 Msa0142200:intron 35.0%
!!! AAGATTTTCGGGTTTGTAGA+AGG + chr1_4:1000660-1000679 Msa0142200:intron 35.0%
!!! AGATTTTCGGGTTTGTAGAA+GGG + chr1_4:1000661-1000680 Msa0142200:intron 35.0%
ATACGGAATTGCGACAAATT+TGG + chr1_4:1000746-1000765 Msa0142200:intron 35.0%
TACGGAATTGCGACAAATTT+GGG + chr1_4:1000747-1000766 Msa0142200:intron 35.0%
GTATGAAGTTCAAATCCTGT+TGG + chr1_4:1001052-1001071 Msa0142200:intron 35.0%
TTAGTGATGATATTTCGACG+TGG + chr1_4:1001216-1001235 Msa0142200:intron 35.0%
TGAAAACAGGATTTGCCATA+TGG - chr1_4:1001412-1001431 None:intergenic 35.0%
! TGAGTAGACCATCTTTTACT+TGG - chr1_4:1001438-1001457 None:intergenic 35.0%
CCTACCATTATGTTACTCAA+GGG + chr1_4:1001521-1001540 Msa0142200:intron 35.0%
ATCTCCCTTGAGTAACATAA+TGG - chr1_4:1001528-1001547 None:intergenic 35.0%
! TTGTTGTTGCTGTTATCATG+CGG + chr1_4:1001714-1001733 Msa0142200:intron 35.0%
AAACTTAGGGGCAATAAAGA+GGG + chr1_4:1001959-1001978 Msa0142200:intron 35.0%
! GTTAAGAAGAAGCACAAATG+TGG + chr1_4:1001981-1002000 Msa0142200:three_prime_UTR 35.0%
! TCTGAGATAGCAATATGGAT+TGG + chr1_4:1002498-1002517 Msa0142200:intron 35.0%
CACTATACAGAGGAGAAAAT+TGG - chr1_4:1002698-1002717 None:intergenic 35.0%
! CAATTTTCTCCTCTGTATAG+TGG + chr1_4:1002696-1002715 Msa0142200:intron 35.0%
! ATTTTCTCCTCTGTATAGTG+GGG + chr1_4:1002698-1002717 Msa0142200:intron 35.0%
! AATTTTTCCCCACTATACAG+AGG - chr1_4:1002708-1002727 None:intergenic 35.0%
ATCATAGTTGTGTATTGCAG+AGG + chr1_4:1003527-1003546 Msa0142200:intron 35.0%
!! TTTTTGGCAGTAGCAAAAAG+TGG + chr1_4:1003633-1003652 Msa0142200:three_prime_UTR 35.0%
AAGTGGCGTAGTTGAAATTA+TGG + chr1_4:1003650-1003669 Msa0142200:three_prime_UTR 35.0%
TATTTGCTTGCAGCAAAACA+TGG + chr1_4:1003777-1003796 Msa0142200:three_prime_UTR 35.0%
GGGTTGCCACATTAATTAAT+AGG - chr1_4:1004376-1004395 None:intergenic 35.0%
ACATAGATCGTTTGAAAGAG+GGG - chr1_4:1004396-1004415 None:intergenic 35.0%
! CTTCTATGATGGTAATGATC+TGG - chr1_4:1004907-1004926 None:intergenic 35.0%
! CTTCTTTGTTGCTTCTATGA+TGG - chr1_4:1004918-1004937 None:intergenic 35.0%
CATCATAGAAGCAACAAAGA+AGG + chr1_4:1004916-1004935 Msa0142200:three_prime_UTR 35.0%
TCAGGAAAACCAAATTTCGA+AGG + chr1_4:1005099-1005118 Msa0142200:three_prime_UTR 35.0%
TTCGAGAAGTGAGTATAGAA+AGG - chr1_4:1005200-1005219 None:intergenic 35.0%
AGAAATGAACATGGCAACAA+TGG - chr1_4:1005292-1005311 None:intergenic 35.0%
GAATGTGAGAGGTAAACAAA+TGG - chr1_4:1005388-1005407 None:intergenic 35.0%
TGTTTACCTCTCACATTCTA+TGG + chr1_4:1005390-1005409 Msa0142200:three_prime_UTR 35.0%
TTGATCTTGTCAAAGTTACG+TGG + chr1_4:1005436-1005455 Msa0142200:three_prime_UTR 35.0%
!! ATGTTTAGAGTACTGGTTGT+TGG + chr1_4:1005583-1005602 Msa0142200:three_prime_UTR 35.0%
AAGAGGAACAGCATTACATG+TGG + chr1_4:995482-995501 Msa0142200:CDS 40.0%
TGAATCCTCTATATGCTGCA+AGG - chr1_4:995620-995639 None:intergenic 40.0%
ATGAATGGCAACGTGAAGAA+TGG - chr1_4:995824-995843 None:intergenic 40.0%
ATCTATGTGTCTTGTCCAAC+AGG + chr1_4:996012-996031 Msa0142200:intron 40.0%
! TCCAATTTTTCGCTCTATGG+AGG + chr1_4:996062-996081 Msa0142200:three_prime_UTR 40.0%
TCCTCCATAGAGCGAAAAAT+TGG - chr1_4:996066-996085 None:intergenic 40.0%
CTAGTAGCAAGCATTTCAAG+AGG - chr1_4:996105-996124 None:intergenic 40.0%
! CTCTTGAAATGCTTGCTACT+AGG + chr1_4:996103-996122 Msa0142200:three_prime_UTR 40.0%
AGAGATCACGTCTTACATGT+TGG + chr1_4:996348-996367 Msa0142200:intron 40.0%
! ATAATGTATTGGTATGGCGG+TGG - chr1_4:996527-996546 None:intergenic 40.0%
!! CTATGTAAGTACTGATTGGG+AGG + chr1_4:996575-996594 Msa0142200:intron 40.0%
ACGAAGTAGATTGGGATTTG+CGG + chr1_4:996648-996667 Msa0142200:intron 40.0%
CCTAAACCTTCAACAACCAA+TGG - chr1_4:996811-996830 None:intergenic 40.0%
! CCATTGGTTGTTGAAGGTTT+AGG + chr1_4:996808-996827 Msa0142200:intron 40.0%
TTGGTTGTTGAAGGTTTAGG+TGG + chr1_4:996811-996830 Msa0142200:intron 40.0%
CTAGGAAAGCAAACTTTGAG+AGG + chr1_4:996914-996933 Msa0142200:intron 40.0%
TACTGAGGGAAATTTAGTGC+AGG - chr1_4:997027-997046 None:intergenic 40.0%
!! TTTTGGGAGAAACTCTTGTG+TGG + chr1_4:997286-997305 Msa0142200:intron 40.0%
TTTGGGAGAAACTCTTGTGT+GGG + chr1_4:997287-997306 Msa0142200:intron 40.0%
AGAAGTGACTCAACGAATCT+TGG - chr1_4:997728-997747 None:intergenic 40.0%
TTCGTTGAGTCACTTCTATC+CGG + chr1_4:997731-997750 Msa0142200:intron 40.0%
CATCCATAGTGTGACTTTAG+TGG - chr1_4:997770-997789 None:intergenic 40.0%
! AGTGACATTTTGTGTAAGGC+GGG - chr1_4:997926-997945 None:intergenic 40.0%
TTGTATTATTCGAGGGTCGT+AGG + chr1_4:998159-998178 Msa0142200:intron 40.0%
TGTATTATTCGAGGGTCGTA+GGG + chr1_4:998160-998179 Msa0142200:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - chr1_4:998325-998344 None:intergenic 40.0%
! CTCCTGTATCCTCTCTTTTT+AGG + chr1_4:998620-998639 Msa0142200:intron 40.0%
!!! CGAGTCTAGTTCTTTTGGAT+AGG - chr1_4:999059-999078 None:intergenic 40.0%
!!! TTACCCGAGTCTAGTTCTTT+TGG - chr1_4:999064-999083 None:intergenic 40.0%
! ACCTCATACGGTTGATGTTT+AGG + chr1_4:999171-999190 Msa0142200:intron 40.0%
TCCTAAACATCAACCGTATG+AGG - chr1_4:999175-999194 None:intergenic 40.0%
! AAGGTGTTTCTGTCAAAGTC+TGG + chr1_4:999443-999462 Msa0142200:intron 40.0%
! AGGTGTTTCTGTCAAAGTCT+GGG + chr1_4:999444-999463 Msa0142200:intron 40.0%
ACTCTTATGATACCTAGCCA+TGG + chr1_4:999537-999556 Msa0142200:intron 40.0%
ATTACATAACGACCATGGCT+AGG - chr1_4:999552-999571 None:intergenic 40.0%
TCTAGCATCTCATATGTGTG+TGG - chr1_4:1000174-1000193 None:intergenic 40.0%
! ATGCTAGATTTTGTACCCCT+CGG + chr1_4:1000186-1000205 Msa0142200:intron 40.0%
! ATGATGATGTGGACGATGTT+TGG - chr1_4:1000401-1000420 None:intergenic 40.0%
!!! TGTTTTGGAGGTAGAGCTTT+TGG - chr1_4:1000460-1000479 None:intergenic 40.0%
CTCTACCTCCAAAACAAACA+AGG + chr1_4:1000464-1000483 Msa0142200:intron 40.0%
GTTATGTGCCATACAGAGTT+TGG + chr1_4:1000560-1000579 Msa0142200:intron 40.0%
ACTAACCACCAAACTCTGTA+TGG - chr1_4:1000571-1000590 None:intergenic 40.0%
! ATACAGAGTTTGGTGGTTAG+TGG + chr1_4:1000570-1000589 Msa0142200:intron 40.0%
! GTAGTCCTTCGGAAGATTTT+CGG + chr1_4:1000648-1000667 Msa0142200:intron 40.0%
! TAGTCCTTCGGAAGATTTTC+GGG + chr1_4:1000649-1000668 Msa0142200:intron 40.0%
AGCACGGGTATTATAAGAGA+TGG + chr1_4:1000789-1000808 Msa0142200:intron 40.0%
AAAGATGGTCTACTCAGTCA+TGG + chr1_4:1001442-1001461 Msa0142200:three_prime_UTR 40.0%
GCCTACCATTATGTTACTCA+AGG + chr1_4:1001520-1001539 Msa0142200:intron 40.0%
CCCTTGAGTAACATAATGGT+AGG - chr1_4:1001524-1001543 None:intergenic 40.0%
TGCACAAAGCAAAAGAGCAA+TGG - chr1_4:1001901-1001920 None:intergenic 40.0%
CAAACTTAGGGGCAATAAAG+AGG + chr1_4:1001958-1001977 Msa0142200:intron 40.0%
! GTGTATTGACATGTGTGAAG+TGG - chr1_4:1002220-1002239 None:intergenic 40.0%
! ATTTTGAACTCGTCGCTAGT+AGG + chr1_4:1002558-1002577 Msa0142200:intron 40.0%
! TTTTGAACTCGTCGCTAGTA+GGG + chr1_4:1002559-1002578 Msa0142200:intron 40.0%
GCAGGTCAACTAAAGATGTA+GGG - chr1_4:1003059-1003078 None:intergenic 40.0%
TAGTTCATCTAAATAGGGCG+TGG - chr1_4:1003088-1003107 None:intergenic 40.0%
AACTATTGACAGGACGAAAC+TGG + chr1_4:1003103-1003122 Msa0142200:intron 40.0%
! CTTTCTAGGGATGGCAAAAA+GGG - chr1_4:1003143-1003162 None:intergenic 40.0%
! TCTTTCTAGGGATGGCAAAA+AGG - chr1_4:1003144-1003163 None:intergenic 40.0%
! AAGGATACTCTTTCTAGGGA+TGG - chr1_4:1003152-1003171 None:intergenic 40.0%
AAATCAAATCCAGTGGGAGA+AGG + chr1_4:1003561-1003580 Msa0142200:three_prime_UTR 40.0%
GGGAGAAGGAAATCAAAGAA+TGG + chr1_4:1003575-1003594 Msa0142200:three_prime_UTR 40.0%
! GTAAAGGCATGTGACAAGAA+AGG + chr1_4:1003690-1003709 Msa0142200:three_prime_UTR 40.0%
AGATGCTGCCAAGTGTAAAA+TGG - chr1_4:1003993-1004012 None:intergenic 40.0%
AACACAACGAAAACACTGCT+TGG + chr1_4:1004020-1004039 Msa0142200:three_prime_UTR 40.0%
AAATGATGTGGGACATCAAG+TGG + chr1_4:1004065-1004084 Msa0142200:three_prime_UTR 40.0%
GTACAAGGTACGCATATGAT+TGG + chr1_4:1004087-1004106 Msa0142200:intron 40.0%
AACAAAGAAGGAAAAACCCC+AGG + chr1_4:1004928-1004947 Msa0142200:three_prime_UTR 40.0%
AACCCCAGGTGAAATCTTTA+AGG + chr1_4:1004942-1004961 Msa0142200:three_prime_UTR 40.0%
CTCCTTAAAGATTTCACCTG+GGG - chr1_4:1004947-1004966 None:intergenic 40.0%
CCTCCTTAAAGATTTCACCT+GGG - chr1_4:1004948-1004967 None:intergenic 40.0%
TCCTCCTTAAAGATTTCACC+TGG - chr1_4:1004949-1004968 None:intergenic 40.0%
CTGATTCATCATTTCCTCCA+GGG - chr1_4:1005083-1005102 None:intergenic 40.0%
AGGCCGAAAAGAAGTTTCAA+TGG - chr1_4:1005252-1005271 None:intergenic 40.0%
ACAACTCCATAGAATGTGAG+AGG - chr1_4:1005399-1005418 None:intergenic 40.0%
ATCTTGTCAAAGTTACGTGG+AGG + chr1_4:1005439-1005458 Msa0142200:three_prime_UTR 40.0%
TGATATGGACTCAACATGAG+TGG + chr1_4:1005770-1005789 Msa0142200:three_prime_UTR 40.0%
GCAGGCTGAATCGTAGAATT+AGG - chr1_4:995165-995184 None:intergenic 45.0%
!! AGTGGGTAATGGAAGACGAT+TGG + chr1_4:995400-995419 Msa0142200:CDS 45.0%
!! GTGGGTAATGGAAGACGATT+GGG + chr1_4:995401-995420 Msa0142200:CDS 45.0%
CTATATGCTGCAAGGTGAAG+AGG - chr1_4:995612-995631 None:intergenic 45.0%
CTTCACCTTGCAGCATATAG+AGG + chr1_4:995612-995631 Msa0142200:CDS 45.0%
GCAAGCACAGCACAAAAAAG+TGG - chr1_4:995722-995741 None:intergenic 45.0%
TGTGTCTTGTCCAACAGGTA+TGG + chr1_4:996017-996036 Msa0142200:intron 45.0%
ATGGAGCCCAATTAACCAAG+TGG + chr1_4:996407-996426 Msa0142200:intron 45.0%
AGTTGTTGCGACGTGTATAG+TGG + chr1_4:996453-996472 Msa0142200:intron 45.0%
!! GACGTGTATAGTGGATGTTG+TGG + chr1_4:996462-996481 Msa0142200:intron 45.0%
ACGTGTCTCTCAACACTACT+AGG + chr1_4:996896-996915 Msa0142200:intron 45.0%
ACTTAGCGACGGAATTAGAG+AGG + chr1_4:996988-997007 Msa0142200:intron 45.0%
CTTAGCGACGGAATTAGAGA+GGG + chr1_4:996989-997008 Msa0142200:intron 45.0%
TGATGTTGGATGTCGAACGA+AGG + chr1_4:997507-997526 Msa0142200:intron 45.0%
ATGTCGAACGAAGGTGGTTA+AGG + chr1_4:997516-997535 Msa0142200:intron 45.0%
TAGTGGCTCGATAGTGAAAC+CGG - chr1_4:997753-997772 None:intergenic 45.0%
GAGCCACTAAAGTCACACTA+TGG + chr1_4:997764-997783 Msa0142200:intron 45.0%
AGGTTATTTATAGGGCAGCG+AGG + chr1_4:998021-998040 Msa0142200:intron 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - chr1_4:998326-998345 None:intergenic 45.0%
!! GTTTGATGGCGTTGTTGCTT+TGG - chr1_4:999725-999744 None:intergenic 45.0%
! TTTGGAGGTAGAGCTTTTGG+AGG - chr1_4:1000457-1000476 None:intergenic 45.0%
ATGTGCCATACAGAGTTTGG+TGG + chr1_4:1000563-1000582 Msa0142200:intron 45.0%
! AGAGTTTGGTGGTTAGTGGT+TGG + chr1_4:1000574-1000593 Msa0142200:intron 45.0%
! GAGTTTGGTGGTTAGTGGTT+GGG + chr1_4:1000575-1000594 Msa0142200:intron 45.0%
!! TTAGTGGTTGGGTTGGATGA+AGG + chr1_4:1000586-1000605 Msa0142200:intron 45.0%
CAAACCCGAAAATCTTCCGA+AGG - chr1_4:1000656-1000675 None:intergenic 45.0%
ATGGTCTACTCAGTCATGGT+GGG + chr1_4:1001446-1001465 Msa0142200:three_prime_UTR 45.0%
GTTGCAGTATATAGGAGCTG+AGG - chr1_4:1001831-1001850 None:intergenic 45.0%
CCACACATGTACGACTGATA+AGG - chr1_4:1002038-1002057 None:intergenic 45.0%
CCTTATCAGTCGTACATGTG+TGG + chr1_4:1002035-1002054 Msa0142200:three_prime_UTR 45.0%
TATCAGTCGTACATGTGTGG+TGG + chr1_4:1002038-1002057 Msa0142200:three_prime_UTR 45.0%
ATCAGTCGTACATGTGTGGT+GGG + chr1_4:1002039-1002058 Msa0142200:three_prime_UTR 45.0%
GGGATTGATCCCTTTGATCA+CGG + chr1_4:1002059-1002078 Msa0142200:three_prime_UTR 45.0%
CCATGTTCTCCGTGATCAAA+GGG - chr1_4:1002071-1002090 None:intergenic 45.0%
ACCATGTTCTCCGTGATCAA+AGG - chr1_4:1002072-1002091 None:intergenic 45.0%
TGCCTAACCCGCTAAAAAGT+AGG + chr1_4:1002591-1002610 Msa0142200:intron 45.0%
GCCTAACCCGCTAAAAAGTA+GGG + chr1_4:1002592-1002611 Msa0142200:intron 45.0%
! TCTGATCCCATCCCGTTTTA+TGG - chr1_4:1003029-1003048 None:intergenic 45.0%
GGCAGGTCAACTAAAGATGT+AGG - chr1_4:1003060-1003079 None:intergenic 45.0%
ATCTAAATAGGGCGTGGAGT+GGG - chr1_4:1003082-1003101 None:intergenic 45.0%
ATTGACAGGACGAAACTGGA+TGG + chr1_4:1003107-1003126 Msa0142200:intron 45.0%
! CTTTGATTTCCTTCTCCCAC+TGG - chr1_4:1003573-1003592 None:intergenic 45.0%
TAGACAACCGCAAGTTGTTG+AGG + chr1_4:1003899-1003918 Msa0142200:three_prime_UTR 45.0%
AGACAACCGCAAGTTGTTGA+GGG + chr1_4:1003900-1003919 Msa0142200:three_prime_UTR 45.0%
AAGTTGTTGAGGGTTGTGGA+AGG + chr1_4:1003910-1003929 Msa0142200:three_prime_UTR 45.0%
AGTTGTTGAGGGTTGTGGAA+GGG + chr1_4:1003911-1003930 Msa0142200:three_prime_UTR 45.0%
ACAACGAAAACACTGCTTGG+AGG + chr1_4:1004023-1004042 Msa0142200:three_prime_UTR 45.0%
AACACTGCTTGGAGGATATC+TGG + chr1_4:1004031-1004050 Msa0142200:three_prime_UTR 45.0%
TGCAGCCATGCAAATGATGT+GGG + chr1_4:1004054-1004073 Msa0142200:three_prime_UTR 45.0%
GATGTCCCACATCATTTGCA+TGG - chr1_4:1004062-1004081 None:intergenic 45.0%
! CCCAGGTGAAATCTTTAAGG+AGG + chr1_4:1004945-1004964 Msa0142200:three_prime_UTR 45.0%
CCTGATTCATCATTTCCTCC+AGG - chr1_4:1005084-1005103 None:intergenic 45.0%
CCTGGAGGAAATGATGAATC+AGG + chr1_4:1005081-1005100 Msa0142200:three_prime_UTR 45.0%
GCAGGTTGTCCTTCGAAATT+TGG - chr1_4:1005111-1005130 None:intergenic 45.0%
TGGCTACGAAGAGAGAACTT+AGG - chr1_4:1005272-1005291 None:intergenic 45.0%
TGTCAAAGTTACGTGGAGGA+AGG + chr1_4:1005443-1005462 Msa0142200:three_prime_UTR 45.0%
TTAACACCCTTGATGCTTGG+TGG - chr1_4:1005474-1005493 None:intergenic 45.0%
AGCTTAACACCCTTGATGCT+TGG - chr1_4:1005477-1005496 None:intergenic 45.0%
!! TCAAGGGTGTTAAGCTGTAG+AGG + chr1_4:1005481-1005500 Msa0142200:three_prime_UTR 45.0%
!!! TTTAATTTTATGAATATATA+TGG + chr1_4:996216-996235 Msa0142200:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr1_4:998831-998850 Msa0142200:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr1_4:998831-998850 Msa0142200:intron 5.0%
!!! AAAATATAAGTTTTTTTTTA+TGG - chr1_4:1003310-1003329 None:intergenic 5.0%
CTGTGCTTGCACGCCATAAA+AGG + chr1_4:995732-995751 Msa0142200:CDS 50.0%
TGTTGGATGTCGAACGAAGG+TGG + chr1_4:997510-997529 Msa0142200:intron 50.0%
ATTCGAGGGTCGTAGGGTAA+AGG + chr1_4:998166-998185 Msa0142200:intron 50.0%
TTCGAGGGTCGTAGGGTAAA+GGG + chr1_4:998167-998186 Msa0142200:intron 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - chr1_4:998330-998349 None:intergenic 50.0%
CCAACTGAGTTAAGCTCACG+AGG + chr1_4:998327-998346 Msa0142200:intron 50.0%
! CTAGATTTTGTACCCCTCGG+TGG + chr1_4:1000189-1000208 Msa0142200:intron 50.0%
! TTGGTGGTTAGTGGTTGGGT+TGG + chr1_4:1000579-1000598 Msa0142200:intron 50.0%
GTAGAAGGGATGAGACACAC+AGG + chr1_4:1000675-1000694 Msa0142200:intron 50.0%
GATGGTCTACTCAGTCATGG+TGG + chr1_4:1001445-1001464 Msa0142200:three_prime_UTR 50.0%
TGGTCTACTCAGTCATGGTG+GGG + chr1_4:1001447-1001466 Msa0142200:three_prime_UTR 50.0%
CCCTTTGATCACGGAGAACA+TGG + chr1_4:1002068-1002087 Msa0142200:three_prime_UTR 50.0%
!!! TTTTAGCGGGTTAGGCAGAG+CGG - chr1_4:1002588-1002607 None:intergenic 50.0%
!!! GCCCTACTTTTTAGCGGGTT+AGG - chr1_4:1002596-1002615 None:intergenic 50.0%
!!! CCACTGCCCTACTTTTTAGC+GGG - chr1_4:1002601-1002620 None:intergenic 50.0%
!!! GCCACTGCCCTACTTTTTAG+CGG - chr1_4:1002602-1002621 None:intergenic 50.0%
GCTAAAAAGTAGGGCAGTGG+CGG + chr1_4:1002601-1002620 Msa0142200:intron 50.0%
CTAAAAAGTAGGGCAGTGGC+GGG + chr1_4:1002602-1002621 Msa0142200:intron 50.0%
TTTATGGAGGACCGACGGAT+TGG - chr1_4:1003013-1003032 None:intergenic 50.0%
TCCGTCGGTCCTCCATAAAA+CGG + chr1_4:1003014-1003033 Msa0142200:intron 50.0%
GGTCCTCCATAAAACGGGAT+GGG + chr1_4:1003020-1003039 Msa0142200:intron 50.0%
! GATCCCATCCCGTTTTATGG+AGG - chr1_4:1003026-1003045 None:intergenic 50.0%
TCTAAATAGGGCGTGGAGTG+GGG - chr1_4:1003081-1003100 None:intergenic 50.0%
CATCTAAATAGGGCGTGGAG+TGG - chr1_4:1003083-1003102 None:intergenic 50.0%
CCACAACCCTCAACAACTTG+CGG - chr1_4:1003909-1003928 None:intergenic 50.0%
GTTGTTGAGGGTTGTGGAAG+GGG + chr1_4:1003912-1003931 Msa0142200:three_prime_UTR 50.0%
GTGCAGCCATGCAAATGATG+TGG + chr1_4:1004053-1004072 Msa0142200:three_prime_UTR 50.0%
GTGGGACATCAAGTGGTACA+AGG + chr1_4:1004072-1004091 Msa0142200:three_prime_UTR 50.0%
GACACTGCCTGATGTAGCAA+AGG - chr1_4:1005061-1005080 None:intergenic 50.0%
CATTACCCACTCGCGGAACT+CGG - chr1_4:995391-995410 None:intergenic 55.0%
CGTCTTCCATTACCCACTCG+CGG - chr1_4:995398-995417 None:intergenic 55.0%
CGCTCTATGGAGGACGAACA+TGG + chr1_4:996072-996091 Msa0142200:three_prime_UTR 55.0%
GTTGAAGACGCTGCAGACCA+AGG + chr1_4:999496-999515 Msa0142200:three_prime_UTR 55.0%
TGAACTCGTCGCTAGTAGGG+TGG + chr1_4:1002562-1002581 Msa0142200:intron 55.0%
CCCGCTAAAAAGTAGGGCAG+TGG + chr1_4:1002598-1002617 Msa0142200:intron 55.0%
! CCCGTTTTATGGAGGACCGA+CGG - chr1_4:1003018-1003037 None:intergenic 55.0%
CCGTCGGTCCTCCATAAAAC+GGG + chr1_4:1003015-1003034 Msa0142200:intron 55.0%
CGGTCCTCCATAAAACGGGA+TGG + chr1_4:1003019-1003038 Msa0142200:intron 55.0%
CCGCAAGTTGTTGAGGGTTG+TGG + chr1_4:1003906-1003925 Msa0142200:three_prime_UTR 55.0%
GTGCCACCACCAAGCATCAA+GGG + chr1_4:1005465-1005484 Msa0142200:three_prime_UTR 55.0%
! ACACCCTTGATGCTTGGTGG+TGG - chr1_4:1005471-1005490 None:intergenic 55.0%
CGAGTTCCGCGAGTGGGTAA+TGG + chr1_4:995389-995408 Msa0142200:CDS 60.0%
GAGGGTCGTAGGGTAAAGGG+AGG + chr1_4:998170-998189 Msa0142200:intron 60.0%
!! CAGTGGCGGGTTGACCTGTT+GGG + chr1_4:1002615-1002634 Msa0142200:intron 60.0%
!! ATGGAGGACCGACGGATTGG+CGG - chr1_4:1003010-1003029 None:intergenic 60.0%
GTTGTAGCAGCACTCGTCGC+AGG + chr1_4:1005030-1005049 Msa0142200:three_prime_UTR 60.0%
GCTACATCAGGCAGTGTCCC+TGG + chr1_4:1005063-1005082 Msa0142200:three_prime_UTR 60.0%
ACATCAGGCAGTGTCCCTGG+AGG + chr1_4:1005066-1005085 Msa0142200:three_prime_UTR 60.0%
! GGTGCCACCACCAAGCATCA+AGG + chr1_4:1005464-1005483 Msa0142200:three_prime_UTR 60.0%
TAGCTGCCGAGTTCCGCGAG+TGG + chr1_4:995382-995401 Msa0142200:intron 65.0%
AGCTGCCGAGTTCCGCGAGT+GGG + chr1_4:995383-995402 Msa0142200:intron 65.0%
!! GCAGTGGCGGGTTGACCTGT+TGG + chr1_4:1002614-1002633 Msa0142200:intron 65.0%
GGGTCAACCCGCCAATCCGT+CGG + chr1_4:1002999-1003018 Msa0142200:intron 65.0%
!! TGGAGGACCGACGGATTGGC+GGG - chr1_4:1003009-1003028 None:intergenic 65.0%
AATAGGGCGTGGAGTGGGGC+AGG - chr1_4:1003077-1003096 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 995057 1005799 995057 ID=Msa0142200;Name=Msa0142200
chr1_4 mRNA 995057 1005799 995057 ID=Msa0142200-mRNA-1;Parent=Msa0142200;Name=Msa0142200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.87|1|1|0.75|8|2123|189
chr1_4 exon 995057 995222 995057 ID=Msa0142200-mRNA-1:exon:309;Parent=Msa0142200-mRNA-1
chr1_4 exon 995385 995856 995385 ID=Msa0142200-mRNA-1:exon:310;Parent=Msa0142200-mRNA-1
chr1_4 exon 996034 996186 996034 ID=Msa0142200-mRNA-1:exon:311;Parent=Msa0142200-mRNA-1
chr1_4 exon 999446 999517 999446 ID=Msa0142200-mRNA-1:exon:312;Parent=Msa0142200-mRNA-1
chr1_4 exon 1001274 1001468 1001274 ID=Msa0142200-mRNA-1:exon:313;Parent=Msa0142200-mRNA-1
chr1_4 exon 1001967 1002140 1001967 ID=Msa0142200-mRNA-1:exon:314;Parent=Msa0142200-mRNA-1
chr1_4 exon 1003547 1004093 1003547 ID=Msa0142200-mRNA-1:exon:315;Parent=Msa0142200-mRNA-1
chr1_4 exon 1004886 1005799 1004886 ID=Msa0142200-mRNA-1:exon:316;Parent=Msa0142200-mRNA-1
chr1_4 CDS 995057 995222 995057 ID=Msa0142200-mRNA-1:cds;Parent=Msa0142200-mRNA-1
chr1_4 CDS 995385 995788 995385 ID=Msa0142200-mRNA-1:cds;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 995789 995856 995789 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 996034 996186 996034 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 999446 999517 999446 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 1001274 1001468 1001274 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 1001967 1002140 1001967 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 1003547 1004093 1003547 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
chr1_4 three_prime_UTR 1004886 1005799 1004886 ID=Msa0142200-mRNA-1:three_prime_utr;Parent=Msa0142200-mRNA-1
Gene Sequence

>Msa0142200

ACTATATCTGCTCAGTTCCTTATTCTTATTTTTCATTTTAAGTTTCAACCTTCCGAAATGAATCCTTATTCTATGATTCAGCCTCAAGATGATTCCGAAATGAATCCTAATTCTACGATTCAGCCTGCAAATGAAGATGAAGATGTACCTTATGACTATCTAGATGCTGCCGAGTTCCGCGAGTGGGTAATGGAAGACGATTGGGAAGAAGTTATAAAAAAATACGAAGAACATGTATTTTTTCACAAGATAAAAATAAAGGGAAGAGGAACAGCATTACATGTGGCAGTGAGTAATGCCGACGAAGAGAGTGTAAAACTTCTTGTAGACGCAATAGTAAAGCATAATGATCCAAGTGGTTTTGAAATAACGACTGAAAGAGATGATACTCCTCTTCACCTTGCAGCATATAGAGGATTCAAAAGTATGTGTGAATGTATCATTGGAAAAAATGATGAAAGGAAGCATTTGATTAAAGTAAACAATGAAAGGGAGAAACACCACTTTTTTGTGCTGTGCTTGCACGCCATAAAAGGACCTTTCTTTACCTACATAGTTTTTCCCAAATGA
Protein sequence

>Msa0142200

TISAQFLILIFHFKFQPSEMNPYSMIQPQDDSEMNPNSTIQPANEDEDVPYDYLDAAEFREWVMEDDWEEVIKKYEEHVFFHKIKIKGRGTALHVAVSNADEESVKLLVDAIVKHNDPSGFEITTERDDTPLHLAAYRGFKSMCECIIGKNDERKHLIKVNNEREKHHFFVLCLHAIKGPFFTYIVFPK*