AlfalfaGEDB | Msa1166190

M. sativa cultivar zhongmu-4 / Msa1166190

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166190	XP_024626987.1	99.046	629	6	0	1	629	1	629	0.0	1284

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166190	sp\|Q9SA69\|Y1301_ARATH	68.837	645	174	9	1	629	1	634	0.0	862

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166190	A0A396HDB7	99.046	629	6	0	1	629	1	629	0.0	1284

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa1166190	0.831330	1.775039e-55	-8.615850e-47
Msa0008040	Msa1166190	0.804808	1.808069e-49	-8.615850e-47
Msa0014770	Msa1166190	0.820496	6.650901e-53	-8.615850e-47
Msa0025160	Msa1166190	0.865329	6.388994e-65	-8.615850e-47
Msa0034210	Msa1166190	0.803826	2.896192e-49	-8.615850e-47
Msa0035380	Msa1166190	0.823356	1.447837e-53	-8.615850e-47
Msa0038530	Msa1166190	0.833765	4.418061e-56	-8.615850e-47
Msa0050660	Msa1166190	0.845990	2.876977e-59	-8.615850e-47
Msa0050700	Msa1166190	0.848611	5.489908e-60	-8.615850e-47
Msa0050790	Msa1166190	0.843176	1.645506e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166190	MtrunA17_Chr7g0268781	99.046	629	6	0	1	629	1	629	0.0	1284
Msa1166190	MtrunA17_Chr1g0195911	76.899	632	132	6	1	629	1	621	0.0	998
Msa1166190	MtrunA17_Chr4g0010091	47.902	572	275	9	30	594	28	583	3.19e-179	521
Msa1166190	MtrunA17_Chr7g0245201	44.034	595	289	11	34	615	59	622	9.83e-163	480
Msa1166190	MtrunA17_Chr5g0401451	40.156	640	317	14	22	629	25	630	2.70e-151	451
Msa1166190	MtrunA17_Chr4g0053841	38.792	629	327	17	25	629	1	595	1.18e-136	412
Msa1166190	MtrunA17_Chr2g0303541	37.086	604	333	11	26	601	15	599	5.21e-123	378
Msa1166190	MtrunA17_Chr3g0108331	35.057	619	319	15	20	617	7	563	6.98e-117	360
Msa1166190	MtrunA17_Chr2g0279481	31.373	663	384	12	13	619	20	667	9.30e-108	340
Msa1166190	MtrunA17_Chr8g0374011	35.392	599	312	12	38	575	22	606	3.60e-107	337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166190	AT1G03010.1	68.837	645	174	9	1	629	1	634	0.0	862
Msa1166190	AT1G03010.2	69.055	614	163	9	32	629	5	607	0.0	816
Msa1166190	AT1G03010.3	69.055	614	163	9	32	629	31	633	0.0	815
Msa1166190	AT2G47860.1	61.231	650	216	12	1	629	1	635	0.0	743
Msa1166190	AT2G47860.3	59.138	673	216	13	1	629	1	658	0.0	730
Msa1166190	AT2G47860.5	61.205	531	170	11	121	629	1	517	0.0	583
Msa1166190	AT2G47860.2	61.205	531	170	11	121	629	1	517	0.0	583
Msa1166190	AT2G47860.4	61.269	457	155	7	1	448	1	444	0.0	531
Msa1166190	AT2G47860.6	58.333	480	155	8	1	448	1	467	4.25e-180	518
Msa1166190	AT5G48800.1	46.540	578	278	8	23	594	28	580	1.90e-174	509

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Find 121 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGAGTTGTAACTCT+TGG	0.524005	7_4:+58254735	Msa1166190:exon
AAAATTATAATACCATTCAG+TGG	0.645788	7_4:-58254820	None:intergenic
AAACACATCGAACATTATAC+AGG	0.516060	7_4:+58256634	Msa1166190:CDS
AAACATGAAAGAAATGCTAT+TGG	0.398126	7_4:-58257076	None:intergenic
AAAGCAAAGCTCAATTCTTA+AGG	0.417656	7_4:+58257372	Msa1166190:CDS
AAAGGTGGTGAATGTGTGTG+TGG	0.678039	7_4:-58254481	None:intergenic
AACCAGAAACACCCTTAGAT+TGG	0.511015	7_4:+58256816	Msa1166190:CDS
AACTTCTTGTAGAAGTGATT+TGG	0.280903	7_4:+58257129	Msa1166190:CDS
AACTTTCCATTGACAGAAAC+TGG	0.249645	7_4:+58254636	Msa1166190:five_prime_UTR
AAGAGCTGAATCATATCTAA+AGG	0.501938	7_4:+58256598	Msa1166190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATGTCATTGTTTGGTAA+AGG	-	chr7_4:58255273-58255292	None:intergenic	30.0%
TTTCATATAGCTAACAGATG+AGG	-	chr7_4:58255318-58255337	None:intergenic	30.0%
CCAAAAAAATTGTCCATTGT+CGG	-	chr7_4:58255424-58255443	None:intergenic	30.0%
ATGGTGCAATAATAAGACAT+TGG	-	chr7_4:58255609-58255628	None:intergenic	30.0%
GACATGAAAATTTCAAAGCA+TGG	-	chr7_4:58255726-58255745	None:intergenic	30.0%
CTACGTGTATATAATGATTC+AGG	+	chr7_4:58255745-58255764	Msa1166190:intron	30.0%
ATTTACCTTGTGAAGTGAAT+AGG	-	chr7_4:58255839-58255858	None:intergenic	30.0%
TGATACACCGTTAGTATAAA+AGG	+	chr7_4:58256023-58256042	Msa1166190:intron	30.0%
ATAGCAAAACTACATTTGAC+AGG	-	chr7_4:58256235-58256254	None:intergenic	30.0%
AAGAGCTGAATCATATCTAA+AGG	+	chr7_4:58256598-58256617	Msa1166190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	58254430	58258571	58254430	ID=Msa1166190;Name=Msa1166190
chr7_4	mRNA	58254430	58258571	58254430	ID=Msa1166190-mRNA-1;Parent=Msa1166190;Name=Msa1166190-mRNA-1;_AED=0.10;_eAED=0.10;_QI=308\|1\|1\|1\|1\|1\|4\|155\|629
chr7_4	exon	58254430	58254829	58254430	ID=Msa1166190-mRNA-1:exon:17792;Parent=Msa1166190-mRNA-1
chr7_4	exon	58255786	58255852	58255786	ID=Msa1166190-mRNA-1:exon:17793;Parent=Msa1166190-mRNA-1
chr7_4	exon	58256362	58257543	58256362	ID=Msa1166190-mRNA-1:exon:17794;Parent=Msa1166190-mRNA-1
chr7_4	exon	58257868	58258571	58257868	ID=Msa1166190-mRNA-1:exon:17795;Parent=Msa1166190-mRNA-1
chr7_4	five_prime_UTR	58254430	58254737	58254430	ID=Msa1166190-mRNA-1:five_prime_utr;Parent=Msa1166190-mRNA-1
chr7_4	CDS	58254738	58254829	58254738	ID=Msa1166190-mRNA-1:cds;Parent=Msa1166190-mRNA-1
chr7_4	CDS	58255786	58255852	58255786	ID=Msa1166190-mRNA-1:cds;Parent=Msa1166190-mRNA-1
chr7_4	CDS	58256362	58257543	58256362	ID=Msa1166190-mRNA-1:cds;Parent=Msa1166190-mRNA-1
chr7_4	CDS	58257868	58258416	58257868	ID=Msa1166190-mRNA-1:cds;Parent=Msa1166190-mRNA-1
chr7_4	three_prime_UTR	58258417	58258571	58258417	ID=Msa1166190-mRNA-1:three_prime_utr;Parent=Msa1166190-mRNA-1

Gene Sequence

>Msa1166190

ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGTGTTTCAGGAAGAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGATGTCTCCAGTGATCTTACCATCCAAGTAGGAGCATCAACCTATTCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTTAGGAAGCTGCTATCTGAATCAAAAGATTCTAAAGTTCCGCGCGTAAGTCTTCCGACCGTGCCAGGTGGTGTAGATGCATTTGAAATAGCTGCAAAATTCTGCTATGGAATCAATGTGGAATTCACCCTCTCGAATATTGCTATGCTATATTGTATATCTCATTTTCTTGAAATGACAGAAGAATTCTCAGAAAAGAATTTGGTGACAAGAGCTGAATCATATCTAAAGGAAACGGTACTCCCAAACACATCGAACATTATACAGGTTCTTCACCATTGTGAAAATCTTGTTCCTTTATCAGAAGATATCAACCTTGTTAATAGGCTAATCAATGCAATTGCAAATAATGCATGCAAAGAGCAACTAACTTCTGGTTTGTTAAAACTTGATCACAACTTTCCTTCTAAAACATTATCAATGATGGAACCAGAAACACCCTTAGATTGGTGGGGAAACTCTTTCAACGTTCTTAGTCTTGATTTCTTCGAACGAGTTATATCGGTTATGAAATCGAAGGGATTAACACAAGAGTTGATCAGCAAAATTTTGGTAAACTATGCACATAATTCTCTTCAAGGGACTAGTAGTGTTAGTTCCCTTGACATTGAATTGCAGAAGAAACAAAGGGTCATTGTTGAAACTATAGTTCGCTTACTACCAACTCAATCTAGGAAAAGCTCAGTTCCAATAGCATTTCTTTCATGTTTATTGAAAACTGCAATAGCAACATTAGTATCAACTTCTTGTAGAAGTGATTTGGAGAGGCGGATCGGTTTACAACTCGATCAGGCAATTCTTGAAGACATACTTATTCCAACGAATTCACCTTCGAGTGCTCACAACACAATGTATGATATAGATTCAATTTTGAGGATCTTTTCTACTTTTCTGAATTTGGACGAGGTGGATGATGAAGACAGTGACTTCAGAGATGAAAATCAAATGATGTATGAGTATGAATTTGACAGTCCTGGATCTCCAAAGCAAAGCTCAATTCTTAAGGTATCCAAATTACTTGACAATTTTCTCGCTGAAGTAGCACTAGACTCAAACTTGTTGCCATCAAAATTCATAGCACTTGCAGAACTACTTCCGGATCATGCTCGCGTTACAAGCGACGGACTCTATCGAGCTGTTGACATCTTCCTTAAGGTTCATCCGAACATTAAGGACTCGGAGCGATACCGCCTAAGCAAAACAATTGATTGTCAGAAACTATCTCAAGAAGCATGCAGCCATGCCGCACAAAATGAAAGGCTACCAGTTCAAATAGGTGTACAAGTTCTTTACTACGAACAAATAAGGCTTCGAAATGCGATGAATGGAGGACACAATCAAATCTTGTTTGGTGGTATTCATGGTCAATTTCCTCAAAGATCAGGGAGTGGTATAGGAAGTGGAGCAATTTCTCCTAGAGATAACTATGCATCGGTAAGAAGAGAGAATCGAGAGCTGAAGCTTGAAGTAACAAGAATGAGAATGAGGTTGAATGATTTGGAGAAAGATCATGTTTCTATGAAGCAAGAGCTTGTGAAGACACATCCTGCACGCAAATTCTTCAAATCATTTGCTCAAAAATTAAGAAAGTTCAATGCTCTATTCCGTATTAACAGTATTCGTGGCAGTGGAACTGGAAGGTCTAGTCCACAACCACGGTCCCGGTTTCCTTTTCAAAAGAGAAGGTGCCACTCAGTTTCATGA

Protein sequence

>Msa1166190

MGVVTLGELKPSVSGRRTFRPSSSIRHATEWPISDVSSDLTIQVGASTYSLHKFPLVSRSGRFRKLLSESKDSKVPRVSLPTVPGGVDAFEIAAKFCYGINVEFTLSNIAMLYCISHFLEMTEEFSEKNLVTRAESYLKETVLPNTSNIIQVLHHCENLVPLSEDINLVNRLINAIANNACKEQLTSGLLKLDHNFPSKTLSMMEPETPLDWWGNSFNVLSLDFFERVISVMKSKGLTQELISKILVNYAHNSLQGTSSVSSLDIELQKKQRVIVETIVRLLPTQSRKSSVPIAFLSCLLKTAIATLVSTSCRSDLERRIGLQLDQAILEDILIPTNSPSSAHNTMYDIDSILRIFSTFLNLDEVDDEDSDFRDENQMMYEYEFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLLPSKFIALAELLPDHARVTSDGLYRAVDIFLKVHPNIKDSERYRLSKTIDCQKLSQEACSHAAQNERLPVQIGVQVLYYEQIRLRNAMNGGHNQILFGGIHGQFPQRSGSGIGSGAISPRDNYASVRRENRELKLEVTRMRMRLNDLEKDHVSMKQELVKTHPARKFFKSFAQKLRKFNALFRINSIRGSGTGRSSPQPRSRFPFQKRRCHSVS*