Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455720 | XP_013460054.1 | 91.033 | 658 | 34 | 4 | 1 | 634 | 1 | 657 | 0.0 | 1071 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455720 | sp|Q8VYM6|NOP2B_ARATH | 59.194 | 620 | 185 | 11 | 51 | 628 | 77 | 670 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455720 | A0A072V7D7 | 91.033 | 658 | 34 | 4 | 1 | 634 | 1 | 657 | 0.0 | 1071 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa0455720 | 0.828196 | 1.028490e-54 | -8.615850e-47 |
| Msa0066740 | Msa0455720 | 0.873278 | 1.664603e-67 | -8.615850e-47 |
| Msa0158000 | Msa0455720 | 0.831887 | 1.293541e-55 | -8.615850e-47 |
| Msa0455720 | Msa0882580 | 0.816273 | 6.020917e-52 | -8.615850e-47 |
| Msa0455720 | Msa0933300 | 0.806761 | 7.030224e-50 | -8.615850e-47 |
| Msa0455720 | Msa0966210 | 0.820309 | 7.343136e-53 | -8.615850e-47 |
| Msa0455720 | Msa1260530 | 0.843986 | 9.999916e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455720 | MtrunA17_Chr3g0102711 | 91.033 | 658 | 34 | 4 | 1 | 634 | 1 | 657 | 0.0 | 1071 |
| Msa0455720 | MtrunA17_Chr5g0446691 | 36.441 | 236 | 115 | 8 | 272 | 496 | 316 | 527 | 1.34e-26 | 114 |
| Msa0455720 | MtrunA17_Chr3g0123801 | 32.105 | 190 | 103 | 5 | 277 | 444 | 159 | 344 | 4.36e-20 | 95.1 |
| Msa0455720 | MtrunA17_Chr8g0381831 | 30.415 | 217 | 119 | 6 | 277 | 465 | 190 | 402 | 2.20e-18 | 89.7 |
| Msa0455720 | MtrunA17_Chr3g0136011 | 33.520 | 179 | 106 | 4 | 272 | 442 | 224 | 397 | 1.72e-16 | 82.8 |
| Msa0455720 | MtrunA17_Chr5g0442891 | 34.694 | 147 | 78 | 7 | 360 | 494 | 459 | 599 | 1.94e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455720 | AT4G26600.1 | 59.194 | 620 | 185 | 11 | 51 | 628 | 77 | 670 | 0.0 | 692 |
| Msa0455720 | AT4G26600.3 | 59.967 | 602 | 173 | 11 | 51 | 610 | 77 | 652 | 0.0 | 682 |
| Msa0455720 | AT4G26600.5 | 56.250 | 656 | 178 | 12 | 51 | 628 | 77 | 701 | 0.0 | 674 |
| Msa0455720 | AT4G26600.7 | 68.595 | 484 | 96 | 6 | 51 | 494 | 77 | 544 | 0.0 | 664 |
| Msa0455720 | AT4G26600.6 | 64.466 | 515 | 96 | 7 | 51 | 494 | 77 | 575 | 0.0 | 646 |
| Msa0455720 | AT5G55920.1 | 64.193 | 539 | 138 | 10 | 36 | 536 | 84 | 605 | 0.0 | 639 |
| Msa0455720 | AT4G26600.8 | 67.333 | 450 | 91 | 6 | 51 | 460 | 77 | 510 | 0.0 | 594 |
| Msa0455720 | AT4G26600.2 | 62.994 | 481 | 91 | 7 | 51 | 460 | 77 | 541 | 0.0 | 577 |
| Msa0455720 | AT4G26600.4 | 62.994 | 481 | 91 | 7 | 51 | 460 | 77 | 541 | 0.0 | 577 |
| Msa0455720 | AT3G13180.1 | 37.179 | 234 | 116 | 8 | 272 | 496 | 310 | 521 | 1.16e-26 | 114 |
| Msa0455720 | AT5G26180.2 | 32.157 | 255 | 127 | 10 | 272 | 501 | 284 | 517 | 6.41e-18 | 88.2 |
| Msa0455720 | AT5G26180.1 | 32.157 | 255 | 127 | 10 | 272 | 501 | 284 | 517 | 6.41e-18 | 88.2 |
| Msa0455720 | AT5G26180.3 | 32.157 | 255 | 127 | 10 | 272 | 501 | 284 | 517 | 6.41e-18 | 88.2 |
| Msa0455720 | AT5G26180.4 | 32.157 | 255 | 127 | 10 | 272 | 501 | 284 | 517 | 6.41e-18 | 88.2 |
| Msa0455720 | AT5G26180.5 | 32.157 | 255 | 127 | 10 | 272 | 501 | 284 | 517 | 6.41e-18 | 88.2 |
| Msa0455720 | AT4G17590.2 | 37.500 | 144 | 49 | 3 | 261 | 402 | 37 | 141 | 2.75e-17 | 80.9 |
| Msa0455720 | AT2G22400.1 | 29.016 | 193 | 108 | 4 | 277 | 444 | 170 | 358 | 1.26e-16 | 84.3 |
| Msa0455720 | AT4G40000.1 | 28.017 | 232 | 119 | 6 | 271 | 465 | 157 | 377 | 6.97e-16 | 82.0 |
| Msa0455720 | AT4G17590.1 | 47.573 | 103 | 50 | 3 | 313 | 413 | 50 | 150 | 3.10e-15 | 75.1 |
Find 156 sgRNAs with CRISPR-Local
Find 434 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCTCTTCTTGGATTC+AGG | 0.141190 | 3_3:-48762279 | None:intergenic |
| TTTACATCATTACTTGGTTT+TGG | 0.152423 | 3_3:-48762399 | None:intergenic |
| TTCGGTTGATAGGGTATTAT+TGG | 0.174197 | 3_3:+48760514 | Msa0455720:CDS |
| TTTATCTTTCTTCCTCTTCT+TGG | 0.176574 | 3_3:-48762286 | None:intergenic |
| TTTATCTTTCTTCCTCTTCT+TGG | 0.179650 | 3_3:-48762370 | None:intergenic |
| TCTGAGGACAAACACTTTAA+AGG | 0.206092 | 3_3:+48757626 | Msa0455720:CDS |
| TCTGATGTTGCAGCAGGTTT+TGG | 0.227277 | 3_3:-48762162 | None:intergenic |
| TTGTCTCAATGCCTTAAAAT+TGG | 0.229426 | 3_3:-48757320 | None:intergenic |
| AGTAATGGTGTTAAAGAAAA+TGG | 0.257699 | 3_3:+48762240 | Msa0455720:CDS |
| CTGTCAGGTTTACAAAGTTT+AGG | 0.265280 | 3_3:+48761469 | Msa0455720:intron |
| AAAGGTTCTGATTTGGAATC+TGG | 0.269000 | 3_3:+48755993 | Msa0455720:CDS |
| TGTCAGGTTTACAAAGTTTA+GGG | 0.281826 | 3_3:+48761470 | Msa0455720:intron |
| TAAACAAAACAAAACAAAAC+TGG | 0.288620 | 3_3:-48762841 | None:intergenic |
| GTAGATTCTTATTCTAAATC+TGG | 0.304253 | 3_3:+48761164 | Msa0455720:CDS |
| TTCTTCCTCTTCTTGGAGTC+AGG | 0.315995 | 3_3:-48762363 | None:intergenic |
| CTTACAAAGGATAATAAATA+AGG | 0.318119 | 3_3:-48762998 | None:intergenic |
| TTCTCCCTCTTCTTGGGTTT+AGG | 0.327583 | 3_3:-48762447 | None:intergenic |
| GATGCCCCTTGCAGTGGAAC+TGG | 0.328800 | 3_3:+48760536 | Msa0455720:CDS |
| GACGGAAGACTCCATCAATA+TGG | 0.331957 | 3_3:+48762751 | Msa0455720:three_prime_UTR |
| CTGTGGTGCTTCTTCTTCTT+CGG | 0.343034 | 3_3:-48755779 | None:intergenic |
| TTTGAAATCTCTTCTCTAGA+TGG | 0.349742 | 3_3:-48762480 | None:intergenic |
| AAAGGAGAGGATTGTTGATA+TGG | 0.355005 | 3_3:+48758133 | Msa0455720:CDS |
| TGAGGTTTGACTGGCTTTGA+AGG | 0.357083 | 3_3:-48755700 | None:intergenic |
| TTTGGAATCTGGGTCGGGTT+CGG | 0.362197 | 3_3:+48756004 | Msa0455720:CDS |
| TGTAGAGAAAGGTTCTGATT+TGG | 0.366163 | 3_3:+48755986 | Msa0455720:intron |
| GTGTTTGTCCTCAGACATAT+AGG | 0.370494 | 3_3:-48757618 | None:intergenic |
| TTCTTAGTTGCTGGCGCCAT+TGG | 0.375256 | 3_3:-48755673 | None:intergenic |
| AGCAAATGTCAAAGAAGCTT+TGG | 0.378613 | 3_3:+48762338 | Msa0455720:intron |
| TGGGTTTCAATTCGGTTGAT+AGG | 0.382919 | 3_3:+48760504 | Msa0455720:CDS |
| GAAGTGGAATCGTCTTTGAT+TGG | 0.383376 | 3_3:-48755751 | None:intergenic |
| GATAAACAGAGGAGTAAATC+TGG | 0.389989 | 3_3:+48757775 | Msa0455720:CDS |
| CGTCTTCGTCATCGCTTCCT+TGG | 0.390260 | 3_3:-48755879 | None:intergenic |
| TCAGACACGAAGACGAGATT+TGG | 0.391397 | 3_3:+48757742 | Msa0455720:intron |
| CCTCAGTACTCCCATATTGA+TGG | 0.397322 | 3_3:-48762762 | None:intergenic |
| GTTCCTTGTGGACTTGACTT+TGG | 0.402894 | 3_3:+48761365 | Msa0455720:CDS |
| CTACAACATCTCGAACTTGA+TGG | 0.409043 | 3_3:+48755802 | Msa0455720:CDS |
| ATTAAGCTGTAAAATCAGTA+TGG | 0.416710 | 3_3:+48762903 | Msa0455720:three_prime_UTR |
| GTTTACATTACCAACTAAAC+AGG | 0.421721 | 3_3:+48756172 | Msa0455720:CDS |
| GAATTGAAACCCAAAACCTT+TGG | 0.426716 | 3_3:-48760494 | None:intergenic |
| CGTCTTGTCTTATCTAATGA+AGG | 0.426921 | 3_3:-48761507 | None:intergenic |
| ACTGATATACGATCATACTA+TGG | 0.431643 | 3_3:+48757382 | Msa0455720:CDS |
| TACCTCCTTCCCATCATAGT+TGG | 0.435058 | 3_3:-48759874 | None:intergenic |
| TTGCTGGCGCCATTGGAGAT+TGG | 0.435898 | 3_3:-48755666 | None:intergenic |
| CAATTATAGCGCAGAATTGA+CGG | 0.436555 | 3_3:+48762733 | Msa0455720:three_prime_UTR |
| CAAAACTGGGACCTTCGATT+AGG | 0.444151 | 3_3:-48762827 | None:intergenic |
| GTTTCTAATCGGTGCTTTAG+TGG | 0.444849 | 3_3:+48757414 | Msa0455720:CDS |
| ATCTGGGTCGGGTTCGGACG+AGG | 0.444949 | 3_3:+48756010 | Msa0455720:CDS |
| AATATCTTCCTCACCCGATT+CGG | 0.446920 | 3_3:-48756042 | None:intergenic |
| TTCTGATTTGGAATCTGGGT+CGG | 0.449495 | 3_3:+48755998 | Msa0455720:CDS |
| GAGAAGAGATTTCAAAAGCC+AGG | 0.450455 | 3_3:+48762487 | Msa0455720:CDS |
| GATTCTGACTTATCTTCTGA+TGG | 0.450798 | 3_3:+48755829 | Msa0455720:CDS |
| CTGTTAGGAACTTGAGGAAG+AGG | 0.455569 | 3_3:+48757034 | Msa0455720:intron |
| GATTGGAGAAGAGAGATTGA+AGG | 0.455597 | 3_3:-48755649 | None:intergenic |
| AACCCAAGAAGAGGGAGAAA+AGG | 0.456344 | 3_3:+48762451 | Msa0455720:CDS |
| GGACTTGACTTTGGACGTCC+AGG | 0.457743 | 3_3:+48761374 | Msa0455720:CDS |
| TACTCTGGAGTGGCACCAAT+TGG | 0.459895 | 3_3:-48757951 | None:intergenic |
| TAGGTCATGCCACCGACTCC+AGG | 0.460196 | 3_3:-48762808 | None:intergenic |
| GGCTACAATGAGTTTCTAAT+CGG | 0.460424 | 3_3:+48757403 | Msa0455720:CDS |
| TTTAAGGCATTGAGACAAGA+TGG | 0.462197 | 3_3:+48757325 | Msa0455720:CDS |
| TTATTGATTATGTGCTCAAA+AGG | 0.465368 | 3_3:+48761327 | Msa0455720:CDS |
| GGGTTTCAATTCGGTTGATA+GGG | 0.465722 | 3_3:+48760505 | Msa0455720:CDS |
| ATATTCTACATGCTCAATCA+TGG | 0.469509 | 3_3:+48761199 | Msa0455720:CDS |
| ATCTGGATCCTCTCAGCAAA+TGG | 0.472293 | 3_3:+48757792 | Msa0455720:CDS |
| GAGGATGATGATTCCGAATC+GGG | 0.472632 | 3_3:+48756029 | Msa0455720:CDS |
| GTGTGTTGCAGGGCTGCACC+TGG | 0.473485 | 3_3:+48758947 | Msa0455720:intron |
| ATCGTCGTCCACCACAAGCT+CGG | 0.474951 | 3_3:-48762211 | None:intergenic |
| AATGTTTCTGATGTTGCAGC+AGG | 0.475408 | 3_3:-48762168 | None:intergenic |
| GGCCTTGGCTCCTCAAGAAA+AGG | 0.475814 | 3_3:+48758115 | Msa0455720:CDS |
| ACTGTAGTCTCCAACTATGA+TGG | 0.476886 | 3_3:+48759864 | Msa0455720:CDS |
| CTGCGCTATAATTGCACAGT+TGG | 0.478186 | 3_3:-48762724 | None:intergenic |
| ATGCCCCTTGCAGTGGAACT+GGG | 0.480681 | 3_3:+48760537 | Msa0455720:CDS |
| GACTTGCTTTAATAGAAAAG+AGG | 0.482514 | 3_3:+48762631 | Msa0455720:CDS |
| GTTTCCAGTCGTTGAACTGA+TGG | 0.482713 | 3_3:+48757566 | Msa0455720:CDS |
| AACATCAGAAACATTTGAAA+AGG | 0.487097 | 3_3:+48762176 | Msa0455720:CDS |
| TAGATTCTTATTCTAAATCT+GGG | 0.488118 | 3_3:+48761165 | Msa0455720:CDS |
| CGAGGATGATGATTCCGAAT+CGG | 0.493595 | 3_3:+48756028 | Msa0455720:CDS |
| CAAAAGGAGGGATGTAAAGC+TGG | 0.505302 | 3_3:+48761343 | Msa0455720:CDS |
| TTGTTTAAGTTATTTAGCTA+AGG | 0.510027 | 3_3:+48762857 | Msa0455720:three_prime_UTR |
| TGGTGCCACTCCAGAGTACA+TGG | 0.514375 | 3_3:+48757956 | Msa0455720:CDS |
| TCTGATTTGGAATCTGGGTC+GGG | 0.515153 | 3_3:+48755999 | Msa0455720:CDS |
| ACGGAAGACTCCATCAATAT+GGG | 0.523253 | 3_3:+48762752 | Msa0455720:three_prime_UTR |
| TTACCCCAGTTCCACTGCAA+GGG | 0.525320 | 3_3:-48760541 | None:intergenic |
| TTCTTCTTCGGATTCAGAAG+TGG | 0.526045 | 3_3:-48755767 | None:intergenic |
| CAAAGGATAATAAATAAGGA+GGG | 0.527970 | 3_3:-48762994 | None:intergenic |
| TGTTTGTCCTCAGACATATA+GGG | 0.528752 | 3_3:-48757617 | None:intergenic |
| CTGAACCTAAACCCAAGAAG+AGG | 0.529858 | 3_3:+48762442 | Msa0455720:CDS |
| TTAAGGCATTGAGACAAGAT+GGG | 0.536152 | 3_3:+48757326 | Msa0455720:CDS |
| GCCACTCCAGAGTACATGGC+TGG | 0.537318 | 3_3:+48757960 | Msa0455720:CDS |
| AATAAATTCAAATTAGCTCA+TGG | 0.540490 | 3_3:-48762942 | None:intergenic |
| AGAAAATGATGAATGACCAT+TGG | 0.540583 | 3_3:+48762680 | Msa0455720:exon |
| AATACTTCTTGTATTGCCAA+TGG | 0.542125 | 3_3:-48762696 | None:intergenic |
| TGAGGAGCCAAGGCCATCAC+AGG | 0.543882 | 3_3:-48758107 | None:intergenic |
| CTGTAGTCTCCAACTATGAT+GGG | 0.544758 | 3_3:+48759865 | Msa0455720:CDS |
| CTGAACCTGAATCCAAGAAG+AGG | 0.544878 | 3_3:+48762274 | Msa0455720:CDS |
| GTCCTCAGACATATAGGGCG+AGG | 0.545103 | 3_3:-48757612 | None:intergenic |
| AAGGTTCTGATTTGGAATCT+GGG | 0.547337 | 3_3:+48755994 | Msa0455720:CDS |
| CTCTCTTCTCCAATCTCCAA+TGG | 0.547768 | 3_3:+48755657 | Msa0455720:exon |
| CCATGTCAATTGCAGCAAGA+AGG | 0.552054 | 3_3:-48761142 | None:intergenic |
| CTTACCCCAGTTCCACTGCA+AGG | 0.552805 | 3_3:-48760542 | None:intergenic |
| CGGGTGAGGAAGATATTGCT+AGG | 0.555784 | 3_3:+48756048 | Msa0455720:CDS |
| CACACGTACACAACATGGAC+GGG | 0.556907 | 3_3:+48761538 | Msa0455720:CDS |
| GACTGCGAATCTGCATAGGA+TGG | 0.558093 | 3_3:+48759830 | Msa0455720:CDS |
| TATGATTCTCAAGTACCAAT+TGG | 0.561582 | 3_3:+48757936 | Msa0455720:CDS |
| TGATGATTCCGAATCGGGTG+AGG | 0.564184 | 3_3:+48756034 | Msa0455720:CDS |
| TTGATTATGTGCTCAAAAGG+AGG | 0.564759 | 3_3:+48761330 | Msa0455720:CDS |
| ACAAGATGGGGCGACGAGGA+AGG | 0.566211 | 3_3:+48757339 | Msa0455720:CDS |
| ACAAAGGATAATAAATAAGG+AGG | 0.567027 | 3_3:-48762995 | None:intergenic |
| CCTTCTTGCTGCAATTGACA+TGG | 0.567622 | 3_3:+48761142 | Msa0455720:CDS |
| TTATTGGATGCCCCTTGCAG+TGG | 0.570741 | 3_3:+48760530 | Msa0455720:CDS |
| GAAATCTCTTCTCTAGATGG+AGG | 0.572729 | 3_3:-48762477 | None:intergenic |
| TGATTATGTGCTCAAAAGGA+GGG | 0.573793 | 3_3:+48761331 | Msa0455720:CDS |
| GACTTGACTTTGGACGTCCA+GGG | 0.574163 | 3_3:+48761375 | Msa0455720:CDS |
| AGTTCCATCAGTTCAACGAC+TGG | 0.580628 | 3_3:-48757570 | None:intergenic |
| AAAGGATAATAAATAAGGAG+GGG | 0.587478 | 3_3:-48762993 | None:intergenic |
| CTCTGACTGCGAATCTGCAT+AGG | 0.587603 | 3_3:+48759826 | Msa0455720:CDS |
| TACCCCAGTTCCACTGCAAG+GGG | 0.588973 | 3_3:-48760540 | None:intergenic |
| TCTAATCGGTGCTTTAGTGG+AGG | 0.590337 | 3_3:+48757417 | Msa0455720:CDS |
| CCACACGTACACAACATGGA+CGG | 0.590377 | 3_3:+48761537 | Msa0455720:CDS |
| AAGGATAATAAATAAGGAGG+GGG | 0.592575 | 3_3:-48762992 | None:intergenic |
| ATGCTCAATCATGGTTGCTG+AGG | 0.593228 | 3_3:+48761208 | Msa0455720:CDS |
| AGATTCTTATTCTAAATCTG+GGG | 0.596204 | 3_3:+48761166 | Msa0455720:CDS |
| GTCTTGTCTTATCTAATGAA+GGG | 0.597739 | 3_3:-48761506 | None:intergenic |
| TGAACCTAAACCCAAGAAGA+GGG | 0.605852 | 3_3:+48762443 | Msa0455720:CDS |
| AAACAAAACAAAACAAAACT+GGG | 0.607287 | 3_3:-48762840 | None:intergenic |
| AGTCTCCAACTATGATGGGA+AGG | 0.613258 | 3_3:+48759869 | Msa0455720:CDS |
| CCTTAAAATTGGAAAGAACA+CGG | 0.614100 | 3_3:-48757309 | None:intergenic |
| CTATCCACACGTACACAACA+TGG | 0.617086 | 3_3:+48761533 | Msa0455720:CDS |
| AGGTCATGCCACCGACTCCA+GGG | 0.618747 | 3_3:-48762807 | None:intergenic |
| GATTCTTATTCTAAATCTGG+GGG | 0.619452 | 3_3:+48761167 | Msa0455720:CDS |
| GAAAGAATGTACCCTGGAGT+CGG | 0.620946 | 3_3:+48762796 | Msa0455720:three_prime_UTR |
| AGAATGTACCCTGGAGTCGG+TGG | 0.621553 | 3_3:+48762799 | Msa0455720:three_prime_UTR |
| GAAATGTGCTCATCTACAGA+AGG | 0.622193 | 3_3:+48760698 | Msa0455720:CDS |
| TGGAACCTGACTCCAAGAAG+AGG | 0.622429 | 3_3:+48762358 | Msa0455720:CDS |
| GCTGCTCTAATGAAGAACTC+AGG | 0.623997 | 3_3:+48758989 | Msa0455720:CDS |
| AAAAGAAACCGAGCTTGTGG+TGG | 0.626206 | 3_3:+48762203 | Msa0455720:CDS |
| CGTCCAAAGTCAAGTCCACA+AGG | 0.626833 | 3_3:-48761368 | None:intergenic |
| TAAGGCATTGAGACAAGATG+GGG | 0.628379 | 3_3:+48757327 | Msa0455720:CDS |
| AAGTGTAATAATTCTTACAA+AGG | 0.631086 | 3_3:-48763011 | None:intergenic |
| CCGTCCATGTTGTGTACGTG+TGG | 0.631808 | 3_3:-48761537 | None:intergenic |
| ACTGCGAATCTGCATAGGAT+GGG | 0.632620 | 3_3:+48759831 | Msa0455720:CDS |
| GACGACGATAAACCTAGTAA+TGG | 0.637067 | 3_3:+48762225 | Msa0455720:CDS |
| GCAGATGTCTTGATAAACAG+AGG | 0.637521 | 3_3:+48757764 | Msa0455720:CDS |
| TGGCTCCTCAAGAAAAGGAG+AGG | 0.638199 | 3_3:+48758120 | Msa0455720:CDS |
| CTCCAACTATGATGGGAAGG+AGG | 0.639968 | 3_3:+48759872 | Msa0455720:CDS |
| TGTTGCAGGGCTGCACCTGG+TGG | 0.642429 | 3_3:+48758950 | Msa0455720:intron |
| CGGTGGCATGACCTAATCGA+AGG | 0.651153 | 3_3:+48762816 | Msa0455720:three_prime_UTR |
| AGCCTCGCCCTATATGTCTG+AGG | 0.651744 | 3_3:+48757610 | Msa0455720:CDS |
| GATGTAAAGCTGGTTCCTTG+TGG | 0.654189 | 3_3:+48761353 | Msa0455720:CDS |
| GCTGTAAAATCAGTATGGAG+AGG | 0.660772 | 3_3:+48762908 | Msa0455720:three_prime_UTR |
| ACCAGCCATGTACTCTGGAG+TGG | 0.663459 | 3_3:-48757961 | None:intergenic |
| TGAGACAAGATGGGGCGACG+AGG | 0.665072 | 3_3:+48757335 | Msa0455720:CDS |
| TGCCCCTTGCAGTGGAACTG+GGG | 0.672170 | 3_3:+48760538 | Msa0455720:CDS |
| AGTTCGAGATGTTGTAGCTG+TGG | 0.674783 | 3_3:-48755796 | None:intergenic |
| CATGTCGAAAGAATGTACCC+TGG | 0.682275 | 3_3:+48762790 | Msa0455720:three_prime_UTR |
| GATGACGAAGACGACGACGA+AGG | 0.694048 | 3_3:+48755889 | Msa0455720:CDS |
| CCATCAATATGGGAGTACTG+AGG | 0.727366 | 3_3:+48762762 | Msa0455720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACTTAAATTTTAGTTA+TGG | + | chr3_3:48756257-48756276 | Msa0455720:intron | 10.0% |
| !!! | TTTACTTAAATTTTAGTTAT+GGG | + | chr3_3:48756258-48756277 | Msa0455720:intron | 10.0% |
| !!! | TTTTATTATAGAAATAAATG+TGG | + | chr3_3:48756734-48756753 | Msa0455720:intron | 10.0% |
| !! | AAATTCTAAATTAGTATTTA+AGG | + | chr3_3:48758685-48758704 | Msa0455720:intron | 10.0% |
| !! | AATTCTAAATTAGTATTTAA+GGG | + | chr3_3:48758686-48758705 | Msa0455720:intron | 10.0% |
| !!! | ATTATAAGATCATTTTTTTA+CGG | - | chr3_3:48759268-48759287 | None:intergenic | 10.0% |
| !!! | TTTTTAATATAATAACACAA+GGG | - | chr3_3:48760177-48760196 | None:intergenic | 10.0% |
| !!! | ATTTTTAATATAATAACACA+AGG | - | chr3_3:48760178-48760197 | None:intergenic | 10.0% |
| !!! | TTGTGTTATTATATTAAAAA+TGG | + | chr3_3:48760177-48760196 | Msa0455720:intron | 10.0% |
| !! | ATATGATAATAATTACAAAA+TGG | - | chr3_3:48760321-48760340 | None:intergenic | 10.0% |
| !! | AATCAATTTCAATATCAAAA+TGG | - | chr3_3:48755951-48755970 | None:intergenic | 15.0% |
| !! | TAAACTCATTGATAAAAAAA+GGG | + | chr3_3:48756076-48756095 | Msa0455720:CDS | 15.0% |
| !! | CAGAAAAAGAAAAAAAAAAT+TGG | - | chr3_3:48756358-48756377 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTCTTTTTCTG+AGG | + | chr3_3:48756358-48756377 | Msa0455720:intron | 15.0% |
| !!! | TTTTTTTTTTCTTTTTCTGA+GGG | + | chr3_3:48756359-48756378 | Msa0455720:intron | 15.0% |
| !! | ATAAATTTGTATCTATGTAA+AGG | + | chr3_3:48757899-48757918 | Msa0455720:intron | 15.0% |
| !!! | CTTTTTTAACTTTTTTCAAA+AGG | - | chr3_3:48758631-48758650 | None:intergenic | 15.0% |
| !! | AAAGATATAATAATAATTGG+TGG | + | chr3_3:48758647-48758666 | Msa0455720:intron | 15.0% |
| !!! | CAAATATATATCTTTTATCA+TGG | + | chr3_3:48758909-48758928 | Msa0455720:intron | 15.0% |
| !!! | AATTCAATTTTGAAAACAAA+AGG | - | chr3_3:48759359-48759378 | None:intergenic | 15.0% |
| !! | ATTATTATCATATTCTATTG+TGG | + | chr3_3:48760328-48760347 | Msa0455720:intron | 15.0% |
| !!! | AAATATAATAAGGTATTCAA+GGG | - | chr3_3:48761004-48761023 | None:intergenic | 15.0% |
| !!! | AAAATATAATAAGGTATTCA+AGG | - | chr3_3:48761005-48761024 | None:intergenic | 15.0% |
| !! | TGAATGTCAAAAATATAATA+AGG | - | chr3_3:48761014-48761033 | None:intergenic | 15.0% |
| !!! | AATTTATCCAGTAATTATTT+TGG | + | chr3_3:48761700-48761719 | Msa0455720:intron | 15.0% |
| !! | CTAAACTCATTGATAAAAAA+AGG | + | chr3_3:48756075-48756094 | Msa0455720:CDS | 20.0% |
| !!! | CTGTTTTCAACTTATTTTTA+GGG | + | chr3_3:48756469-48756488 | Msa0455720:intron | 20.0% |
| !! | ATAAAAGCTTATTATCCAAA+CGG | - | chr3_3:48756495-48756514 | None:intergenic | 20.0% |
| !!! | TTATTTTCATAAGCTATTCA+AGG | + | chr3_3:48756514-48756533 | Msa0455720:intron | 20.0% |
| !!! | AAGCTTATGAAATACAATTT+TGG | + | chr3_3:48756551-48756570 | Msa0455720:intron | 20.0% |
| !! | TCATATAACAAAAAAGACAA+AGG | - | chr3_3:48757853-48757872 | None:intergenic | 20.0% |
| !! | TACATAGATACAAATTTATC+TGG | - | chr3_3:48757898-48757917 | None:intergenic | 20.0% |
| !! | TGACAAATTAAACAAGAAAA+AGG | + | chr3_3:48758365-48758384 | Msa0455720:intron | 20.0% |
| !! | TATTTATTTAGCCATTATTG+TGG | + | chr3_3:48759111-48759130 | Msa0455720:intron | 20.0% |
| !!! | AATTTTTGCAAATGAAATGA+AGG | + | chr3_3:48759788-48759807 | Msa0455720:CDS | 20.0% |
| !! | TTATAATCTACTTTATGTAC+TGG | + | chr3_3:48760095-48760114 | Msa0455720:intron | 20.0% |
| !! | TATAATCTACTTTATGTACT+GGG | + | chr3_3:48760096-48760115 | Msa0455720:intron | 20.0% |
| !!! | CATTTTGTATAATGACAAAA+AGG | - | chr3_3:48760204-48760223 | None:intergenic | 20.0% |
| !!! | CTTTTTGTCATTATACAAAA+TGG | + | chr3_3:48760202-48760221 | Msa0455720:intron | 20.0% |
| !! | ATAAATGTAAACAATAAGCT+AGG | - | chr3_3:48760456-48760475 | None:intergenic | 20.0% |
| !! | AAAGAAATTAATTGAGTTCA+AGG | - | chr3_3:48760832-48760851 | None:intergenic | 20.0% |
| !!! | TATATTTTTGACATTCAATC+AGG | + | chr3_3:48761017-48761036 | Msa0455720:intron | 20.0% |
| !! | TTATTGAATATTAGCAAAGA+AGG | - | chr3_3:48761098-48761117 | None:intergenic | 20.0% |
| !!! | TAATTTCCTTTTTCTTTTGT+AGG | + | chr3_3:48761115-48761134 | Msa0455720:intron | 20.0% |
| !! | TAGATTCTTATTCTAAATCT+GGG | + | chr3_3:48761165-48761184 | Msa0455720:CDS | 20.0% |
| !!! | TTTGCAAGAGAAAATTTTAT+GGG | - | chr3_3:48761669-48761688 | None:intergenic | 20.0% |
| !!! | TTTTGCAAGAGAAAATTTTA+TGG | - | chr3_3:48761670-48761689 | None:intergenic | 20.0% |
| !! | TCAACAATTTAGAAATTTGT+TGG | - | chr3_3:48761742-48761761 | None:intergenic | 20.0% |
| !! | TTGAAATTATTTGTACAAGA+TGG | + | chr3_3:48761758-48761777 | Msa0455720:intron | 20.0% |
| !!! | TTTGCTTTTATATCATTACT+TGG | - | chr3_3:48762324-48762343 | None:intergenic | 20.0% |
| !! | TATGAATAAAACATTTAACC+TGG | - | chr3_3:48762508-48762527 | None:intergenic | 20.0% |
| !! | TAATTATATTCATAAACTGC+TGG | - | chr3_3:48762564-48762583 | None:intergenic | 20.0% |
| !! | AATTATCCCTTAAAAATCTA+AGG | + | chr3_3:48762579-48762598 | Msa0455720:intron | 20.0% |
| !!! | CAAAATCCTTAGATTTTTAA+GGG | - | chr3_3:48762588-48762607 | None:intergenic | 20.0% |
| !! | AAACAAAACAAAACAAAACT+GGG | - | chr3_3:48762843-48762862 | None:intergenic | 20.0% |
| !! | TAAACAAAACAAAACAAAAC+TGG | - | chr3_3:48762844-48762863 | None:intergenic | 20.0% |
| !!! | TTGTTTAAGTTATTTAGCTA+AGG | + | chr3_3:48762857-48762876 | Msa0455720:three_prime_UTR | 20.0% |
| !! | AATAAATTCAAATTAGCTCA+TGG | - | chr3_3:48762945-48762964 | None:intergenic | 20.0% |
| !! | CTTACAAAGGATAATAAATA+AGG | - | chr3_3:48763001-48763020 | None:intergenic | 20.0% |
| !! | AAGTGTAATAATTCTTACAA+AGG | - | chr3_3:48763014-48763033 | None:intergenic | 20.0% |
| !!! | AACAATTTGAACTTTTTTGG+GGG | - | chr3_3:48755731-48755750 | None:intergenic | 25.0% |
| !!! | GAACAATTTGAACTTTTTTG+GGG | - | chr3_3:48755732-48755751 | None:intergenic | 25.0% |
| !!! | GGAACAATTTGAACTTTTTT+GGG | - | chr3_3:48755733-48755752 | None:intergenic | 25.0% |
| !!! | TGGAACAATTTGAACTTTTT+TGG | - | chr3_3:48755734-48755753 | None:intergenic | 25.0% |
| !! | TGTTTATGTTTTGTAGAGAA+AGG | + | chr3_3:48755975-48755994 | Msa0455720:intron | 25.0% |
| ! | AAAAAAGAAACCTGTTTAGT+TGG | - | chr3_3:48756185-48756204 | None:intergenic | 25.0% |
| ! | TTATGACTGTTATTGTGTTA+TGG | + | chr3_3:48756233-48756252 | Msa0455720:intron | 25.0% |
| ! | TATGACTGTTATTGTGTTAT+GGG | + | chr3_3:48756234-48756253 | Msa0455720:intron | 25.0% |
| !!! | GCTGTTTTCAACTTATTTTT+AGG | + | chr3_3:48756468-48756487 | Msa0455720:intron | 25.0% |
| !! | AAAAGCTTGTTTATTTGCAT+AGG | + | chr3_3:48756599-48756618 | Msa0455720:intron | 25.0% |
| ! | ATAAGCTGTTTATATCAACA+TGG | + | chr3_3:48756791-48756810 | Msa0455720:intron | 25.0% |
| ! | CTTAACAAGTGTAAAATCTA+CGG | + | chr3_3:48756955-48756974 | Msa0455720:intron | 25.0% |
| ! | ACATTTAATGTTGTAATGTG+TGG | + | chr3_3:48756991-48757010 | Msa0455720:intron | 25.0% |
| ! | GAAATTAAAGTTCAAAGCAT+AGG | - | chr3_3:48757466-48757485 | None:intergenic | 25.0% |
| ! | TAGATGTATATGGTAAAAAC+AGG | - | chr3_3:48757503-48757522 | None:intergenic | 25.0% |
| ! | ACAAATATGTAAGCTCAATT+GGG | - | chr3_3:48757709-48757728 | None:intergenic | 25.0% |
| ! | ATTTATCTGGTATTAGAAAC+TGG | - | chr3_3:48757885-48757904 | None:intergenic | 25.0% |
| ! | ATTTGTATCTATGTAAAGGT+TGG | + | chr3_3:48757903-48757922 | Msa0455720:intron | 25.0% |
| ! | ATCACATAGAAAACTGATAT+AGG | - | chr3_3:48758216-48758235 | None:intergenic | 25.0% |
| ! | ATGAAACAGTATATTGTCAT+GGG | - | chr3_3:48758295-48758314 | None:intergenic | 25.0% |
| ! | TATGAAACAGTATATTGTCA+TGG | - | chr3_3:48758296-48758315 | None:intergenic | 25.0% |
| !! | CAGACATTATAGTTCATTTT+GGG | + | chr3_3:48759416-48759435 | Msa0455720:intron | 25.0% |
| ! | AAGCTAGTAATAATACCTTA+TGG | - | chr3_3:48759648-48759667 | None:intergenic | 25.0% |
| !!! | AGTTGTTATTTTTTTATCGC+AGG | + | chr3_3:48759762-48759781 | Msa0455720:intron | 25.0% |
| ! | TGTTAAGTATATACAAGTAC+AGG | - | chr3_3:48760252-48760271 | None:intergenic | 25.0% |
| ! | TACTTGTATATACTTAACAC+TGG | + | chr3_3:48760253-48760272 | Msa0455720:intron | 25.0% |
| ! | ATCATTATACGACTGAAAAT+GGG | - | chr3_3:48760414-48760433 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTCAGCTTCCAA+AGG | + | chr3_3:48760478-48760497 | Msa0455720:intron | 25.0% |
| !!! | GTAAAATCAAGGTTTTGTTT+GGG | + | chr3_3:48760720-48760739 | Msa0455720:intron | 25.0% |
| !! | TATCTTATTTATACGCATTG+AGG | + | chr3_3:48760771-48760790 | Msa0455720:intron | 25.0% |
| !! | ATCTTATTTATACGCATTGA+GGG | + | chr3_3:48760772-48760791 | Msa0455720:intron | 25.0% |
| ! | AATTAATTGAGTTCAAGGAA+CGG | - | chr3_3:48760827-48760846 | None:intergenic | 25.0% |
| !!! | CCGATTTTTTTTTTGCATAT+CGG | - | chr3_3:48760873-48760892 | None:intergenic | 25.0% |
| ! | CCGATATGCAAAAAAAAAAT+CGG | + | chr3_3:48760870-48760889 | Msa0455720:intron | 25.0% |
| !! | CGAATTTTATATTCTCACTA+CGG | - | chr3_3:48761052-48761071 | None:intergenic | 25.0% |
| ! | GTAGATTCTTATTCTAAATC+TGG | + | chr3_3:48761164-48761183 | Msa0455720:CDS | 25.0% |
| ! | AGATTCTTATTCTAAATCTG+GGG | + | chr3_3:48761166-48761185 | Msa0455720:CDS | 25.0% |
| !! | TTATTGATTATGTGCTCAAA+AGG | + | chr3_3:48761327-48761346 | Msa0455720:CDS | 25.0% |
| ! | AAAACAAAACAATGCTGTAA+GGG | - | chr3_3:48761416-48761435 | None:intergenic | 25.0% |
| ! | AAAAACAAAACAATGCTGTA+AGG | - | chr3_3:48761417-48761436 | None:intergenic | 25.0% |
| !!! | ACAGCATTGTTTTGTTTTTT+AGG | + | chr3_3:48761418-48761437 | Msa0455720:intron | 25.0% |
| !! | TTGCAAGAGAAAATTTTATG+GGG | - | chr3_3:48761668-48761687 | None:intergenic | 25.0% |
| ! | CTAGTATCCAAAATAATTAC+TGG | - | chr3_3:48761710-48761729 | None:intergenic | 25.0% |
| !!! | CAATTTAGAAATTTGTTGGT+GGG | - | chr3_3:48761738-48761757 | None:intergenic | 25.0% |
| !!! | ACAATTTAGAAATTTGTTGG+TGG | - | chr3_3:48761739-48761758 | None:intergenic | 25.0% |
| ! | AAATTATTTGTACAAGATGG+TGG | + | chr3_3:48761761-48761780 | Msa0455720:intron | 25.0% |
| ! | GTATAGGATGTTATTGATAT+AGG | + | chr3_3:48761828-48761847 | Msa0455720:intron | 25.0% |
| !! | TTGATATTTTCATTGTGTAG+TGG | + | chr3_3:48762033-48762052 | Msa0455720:intron | 25.0% |
| ! | AACATCAGAAACATTTGAAA+AGG | + | chr3_3:48762176-48762195 | Msa0455720:CDS | 25.0% |
| !! | TTTTCTTTAACACCATTACT+AGG | - | chr3_3:48762240-48762259 | None:intergenic | 25.0% |
| !! | AGTAATGGTGTTAAAGAAAA+TGG | + | chr3_3:48762240-48762259 | Msa0455720:CDS | 25.0% |
| !!! | ATATCATTACTTGGTTTTGA+GGG | - | chr3_3:48762315-48762334 | None:intergenic | 25.0% |
| !!! | TATATCATTACTTGGTTTTG+AGG | - | chr3_3:48762316-48762335 | None:intergenic | 25.0% |
| !!! | TTACATCATTACTTGGTTTT+GGG | - | chr3_3:48762401-48762420 | None:intergenic | 25.0% |
| !! | TTTACATCATTACTTGGTTT+TGG | - | chr3_3:48762402-48762421 | None:intergenic | 25.0% |
| !!! | TTAGCTTTTACATCATTACT+TGG | - | chr3_3:48762408-48762427 | None:intergenic | 25.0% |
| !! | GCAAAATCCTTAGATTTTTA+AGG | - | chr3_3:48762589-48762608 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTAAAATCAGTA+TGG | + | chr3_3:48762903-48762922 | Msa0455720:three_prime_UTR | 25.0% |
| ! | AAAGGATAATAAATAAGGAG+GGG | - | chr3_3:48762996-48763015 | None:intergenic | 25.0% |
| ! | CAAAGGATAATAAATAAGGA+GGG | - | chr3_3:48762997-48763016 | None:intergenic | 25.0% |
| ! | ACAAAGGATAATAAATAAGG+AGG | - | chr3_3:48762998-48763017 | None:intergenic | 25.0% |
| GTTTACATTACCAACTAAAC+AGG | + | chr3_3:48756172-48756191 | Msa0455720:CDS | 30.0% | |
| TGTGAAGAACTTAAGAAAAC+AGG | + | chr3_3:48756427-48756446 | Msa0455720:intron | 30.0% | |
| GAACTTAAGAAAACAGGTTA+TGG | + | chr3_3:48756433-48756452 | Msa0455720:intron | 30.0% | |
| !! | CTATTTTGGAGAACTTATCA+GGG | - | chr3_3:48756665-48756684 | None:intergenic | 30.0% |
| !! | GCTGTTTTCATAAGCTATTT+TGG | - | chr3_3:48756679-48756698 | None:intergenic | 30.0% |
| GTTGTAATGTGTGGTAAAAA+TGG | + | chr3_3:48757000-48757019 | Msa0455720:intron | 30.0% | |
| !! | ATGGTCATCTTTTAACTGTT+AGG | + | chr3_3:48757019-48757038 | Msa0455720:intron | 30.0% |
| !! | TTTTAACTGTTAGGAACTTG+AGG | + | chr3_3:48757028-48757047 | Msa0455720:intron | 30.0% |
| CCTTAAAATTGGAAAGAACA+CGG | - | chr3_3:48757312-48757331 | None:intergenic | 30.0% | |
| TTGTCTCAATGCCTTAAAAT+TGG | - | chr3_3:48757323-48757342 | None:intergenic | 30.0% | |
| ACTGATATACGATCATACTA+TGG | + | chr3_3:48757382-48757401 | Msa0455720:CDS | 30.0% | |
| TGTATATGGTAAAAACAGGA+TGG | - | chr3_3:48757499-48757518 | None:intergenic | 30.0% | |
| AAGCAGAAACTAGATGTATA+TGG | - | chr3_3:48757513-48757532 | None:intergenic | 30.0% | |
| GACAAATATGTAAGCTCAAT+TGG | - | chr3_3:48757710-48757729 | None:intergenic | 30.0% | |
| TATGATTCTCAAGTACCAAT+TGG | + | chr3_3:48757936-48757955 | Msa0455720:CDS | 30.0% | |
| GATATAGGTTCTCTAACATT+TGG | - | chr3_3:48758201-48758220 | None:intergenic | 30.0% | |
| ! | CCATGGAAAATTTTTATGAC+TGG | - | chr3_3:48758244-48758263 | None:intergenic | 30.0% |
| ! | CCAGTCATAAAAATTTTCCA+TGG | + | chr3_3:48758241-48758260 | Msa0455720:intron | 30.0% |
| !! | TCTTTAGGATAAGTATACCT+TGG | + | chr3_3:48758401-48758420 | Msa0455720:intron | 30.0% |
| GTATTGTAACAAAGTGAAAG+AGG | - | chr3_3:48758449-48758468 | None:intergenic | 30.0% | |
| TAAAACTCAAACGGAACTAA+GGG | - | chr3_3:48758718-48758737 | None:intergenic | 30.0% | |
| TTAAAACTCAAACGGAACTA+AGG | - | chr3_3:48758719-48758738 | None:intergenic | 30.0% | |
| GCAAAAGGTTAAAACTCAAA+CGG | - | chr3_3:48758727-48758746 | None:intergenic | 30.0% | |
| !! | GAGTTTTGTCAAAATACACA+TGG | + | chr3_3:48758828-48758847 | Msa0455720:intron | 30.0% |
| TCAAAATACACATGGAGATT+TGG | + | chr3_3:48758836-48758855 | Msa0455720:intron | 30.0% | |
| ! | ACATTTTTATGTGTGTTGCA+GGG | + | chr3_3:48758937-48758956 | Msa0455720:intron | 30.0% |
| TATTTAGCCATTATTGTGGA+AGG | + | chr3_3:48759115-48759134 | Msa0455720:intron | 30.0% | |
| ATAGTATCCTTCCACAATAA+TGG | - | chr3_3:48759125-48759144 | None:intergenic | 30.0% | |
| CCAAAATGAACTATAATGTC+TGG | - | chr3_3:48759418-48759437 | None:intergenic | 30.0% | |
| ! | CCAGACATTATAGTTCATTT+TGG | + | chr3_3:48759415-48759434 | Msa0455720:intron | 30.0% |
| TTTGAACTTTCAACTAGTAG+AGG | + | chr3_3:48759463-48759482 | Msa0455720:intron | 30.0% | |
| ! | ATGCACAAACTTTAAGTTCA+AGG | - | chr3_3:48759619-48759638 | None:intergenic | 30.0% |
| CTAGTAATAATACCTTATGG+AGG | - | chr3_3:48759645-48759664 | None:intergenic | 30.0% | |
| GATTATATTTCCACACTGTT+TGG | + | chr3_3:48759939-48759958 | Msa0455720:intron | 30.0% | |
| AAATAGAAAACCAAACAGTG+TGG | - | chr3_3:48759952-48759971 | None:intergenic | 30.0% | |
| !! | CTTTGTTTACACATTTTTGC+TGG | + | chr3_3:48760031-48760050 | Msa0455720:intron | 30.0% |
| TCGCTTATTAAAAGAAGACT+CGG | - | chr3_3:48760065-48760084 | None:intergenic | 30.0% | |
| !!! | ATTCTATTGTGGTTTTTTCC+TGG | + | chr3_3:48760339-48760358 | Msa0455720:intron | 30.0% |
| GATCATTATACGACTGAAAA+TGG | - | chr3_3:48760415-48760434 | None:intergenic | 30.0% | |
| !!! | AAAGGTTTTGGGTTTCAATT+CGG | + | chr3_3:48760496-48760515 | Msa0455720:CDS | 30.0% |
| CTTGTCTATGTTTATGTTCA+AGG | + | chr3_3:48760598-48760617 | Msa0455720:intron | 30.0% | |
| ATCTACAGAAGGTAAAATCA+AGG | + | chr3_3:48760709-48760728 | Msa0455720:intron | 30.0% | |
| !!! | GGTAAAATCAAGGTTTTGTT+TGG | + | chr3_3:48760719-48760738 | Msa0455720:intron | 30.0% |
| GATTCTTATTCTAAATCTGG+GGG | + | chr3_3:48761167-48761186 | Msa0455720:CDS | 30.0% | |
| ATATTCTACATGCTCAATCA+TGG | + | chr3_3:48761199-48761218 | Msa0455720:CDS | 30.0% | |
| AAACAAAACAATGCTGTAAG+GGG | - | chr3_3:48761415-48761434 | None:intergenic | 30.0% | |
| TGTCAGGTTTACAAAGTTTA+GGG | + | chr3_3:48761470-48761489 | Msa0455720:intron | 30.0% | |
| GTCTTGTCTTATCTAATGAA+GGG | - | chr3_3:48761509-48761528 | None:intergenic | 30.0% | |
| !! | CTACTGGTTTAGTTTGATAA+AGG | + | chr3_3:48761872-48761891 | Msa0455720:intron | 30.0% |
| ACATTCTCAAAATATCTGAG+AGG | + | chr3_3:48761941-48761960 | Msa0455720:intron | 30.0% | |
| TTTATCTTTCTTCCTCTTCT+TGG | - | chr3_3:48762289-48762308 | None:intergenic | 30.0% | |
| !!! | TATCATTACTTGGTTTTGAG+GGG | - | chr3_3:48762314-48762333 | None:intergenic | 30.0% |
| TTTATCTTTCTTCCTCTTCT+TGG | - | chr3_3:48762289-48762308 | None:intergenic | 30.0% | |
| !!! | TACATCATTACTTGGTTTTG+GGG | - | chr3_3:48762400-48762419 | None:intergenic | 30.0% |
| ! | TTTGAAATCTCTTCTCTAGA+TGG | - | chr3_3:48762483-48762502 | None:intergenic | 30.0% |
| ! | GACTTGCTTTAATAGAAAAG+AGG | + | chr3_3:48762631-48762650 | Msa0455720:CDS | 30.0% |
| ATAGAAAAGAGGAGAAAAAG+TGG | + | chr3_3:48762642-48762661 | Msa0455720:CDS | 30.0% | |
| AGAAAATGATGAATGACCAT+TGG | + | chr3_3:48762680-48762699 | Msa0455720:exon | 30.0% | |
| AATACTTCTTGTATTGCCAA+TGG | - | chr3_3:48762699-48762718 | None:intergenic | 30.0% | |
| AAGGATAATAAATAAGGAGG+GGG | - | chr3_3:48762995-48763014 | None:intergenic | 30.0% | |
| !!! | GAAGGTTTTTTCTTAGTTGC+TGG | - | chr3_3:48755685-48755704 | None:intergenic | 35.0% |
| GATTCTGACTTATCTTCTGA+TGG | + | chr3_3:48755829-48755848 | Msa0455720:CDS | 35.0% | |
| ! | TTAGCTGATGATTTTCTCCA+AGG | + | chr3_3:48755862-48755881 | Msa0455720:CDS | 35.0% |
| ! | TGTAGAGAAAGGTTCTGATT+TGG | + | chr3_3:48755986-48756005 | Msa0455720:intron | 35.0% |
| !! | AAAGGTTCTGATTTGGAATC+TGG | + | chr3_3:48755993-48756012 | Msa0455720:CDS | 35.0% |
| !! | AAGGTTCTGATTTGGAATCT+GGG | + | chr3_3:48755994-48756013 | Msa0455720:CDS | 35.0% |
| !!! | AACTTATTTTTAGGGCCGTT+TGG | + | chr3_3:48756477-48756496 | Msa0455720:intron | 35.0% |
| !! | GCTATTTTGGAGAACTTATC+AGG | - | chr3_3:48756666-48756685 | None:intergenic | 35.0% |
| ! | AATCAGAATTGACTTCGACT+CGG | - | chr3_3:48756818-48756837 | None:intergenic | 35.0% |
| AGTGTAAAATCTACGGAACT+TGG | + | chr3_3:48756962-48756981 | Msa0455720:intron | 35.0% | |
| TCTGTAGATTGGAAAGATCT+GGG | - | chr3_3:48757070-48757089 | None:intergenic | 35.0% | |
| ! | CCGTGTTCTTTCCAATTTTA+AGG | + | chr3_3:48757309-48757328 | Msa0455720:CDS | 35.0% |
| !! | TTTAAGGCATTGAGACAAGA+TGG | + | chr3_3:48757325-48757344 | Msa0455720:CDS | 35.0% |
| !! | TTAAGGCATTGAGACAAGAT+GGG | + | chr3_3:48757326-48757345 | Msa0455720:CDS | 35.0% |
| GGCTACAATGAGTTTCTAAT+CGG | + | chr3_3:48757403-48757422 | Msa0455720:CDS | 35.0% | |
| TGTTTGTCCTCAGACATATA+GGG | - | chr3_3:48757620-48757639 | None:intergenic | 35.0% | |
| TCTGAGGACAAACACTTTAA+AGG | + | chr3_3:48757626-48757645 | Msa0455720:CDS | 35.0% | |
| !! | ACGTCTATTTCTGTCACTTT+GGG | + | chr3_3:48757653-48757672 | Msa0455720:intron | 35.0% |
| GATAAACAGAGGAGTAAATC+TGG | + | chr3_3:48757775-48757794 | Msa0455720:CDS | 35.0% | |
| ! | AGGTTTTTATATGTCTCTGC+TGG | + | chr3_3:48757823-48757842 | Msa0455720:intron | 35.0% |
| TGGTATTAGAAACTGGTACT+TGG | - | chr3_3:48757878-48757897 | None:intergenic | 35.0% | |
| AAAGGAGAGGATTGTTGATA+TGG | + | chr3_3:48758133-48758152 | Msa0455720:CDS | 35.0% | |
| ! | AAATTTTCCATGGTGTTCTG+AGG | + | chr3_3:48758251-48758270 | Msa0455720:intron | 35.0% |
| GGCTTAACTTAAACGTCTTT+AGG | + | chr3_3:48758386-48758405 | Msa0455720:intron | 35.0% | |
| GTTCAAGAGATGATTTACCA+AGG | - | chr3_3:48758421-48758440 | None:intergenic | 35.0% | |
| TTGTAACAAAGTGAAAGAGG+CGG | - | chr3_3:48758446-48758465 | None:intergenic | 35.0% | |
| AAGTAATAGGTTGTGGCAAA+AGG | - | chr3_3:48758742-48758761 | None:intergenic | 35.0% | |
| GCCACAACCTATTACTTATT+AGG | + | chr3_3:48758745-48758764 | Msa0455720:intron | 35.0% | |
| GCCTAATAAGTAATAGGTTG+TGG | - | chr3_3:48758749-48758768 | None:intergenic | 35.0% | |
| AAGAGCAGAACTGGTTATAA+GGG | - | chr3_3:48758774-48758793 | None:intergenic | 35.0% | |
| ATACAAGCTCTTCTTGAACA+TGG | + | chr3_3:48758875-48758894 | Msa0455720:intron | 35.0% | |
| ! | GACATTTTTATGTGTGTTGC+AGG | + | chr3_3:48758936-48758955 | Msa0455720:intron | 35.0% |
| !! | ATGTAAGTTGTTTTACCACC+AGG | - | chr3_3:48758968-48758987 | None:intergenic | 35.0% |
| TCGCTATTATCAAGTGTACT+TGG | + | chr3_3:48759200-48759219 | Msa0455720:intron | 35.0% | |
| AACTTGATAAGAATGACCCA+AGG | - | chr3_3:48759565-48759584 | None:intergenic | 35.0% | |
| TTTGTGCATATTCCTCCATA+AGG | + | chr3_3:48759630-48759649 | Msa0455720:intron | 35.0% | |
| AGTGAAGTCAGAGATTAATG+TGG | - | chr3_3:48759912-48759931 | None:intergenic | 35.0% | |
| TTACAAGAACTGTAAGATGC+CGG | + | chr3_3:48760130-48760149 | Msa0455720:intron | 35.0% | |
| AGAAACTAATGTGACCAGAA+GGG | - | chr3_3:48760288-48760307 | None:intergenic | 35.0% | |
| AAGAAACTAATGTGACCAGA+AGG | - | chr3_3:48760289-48760308 | None:intergenic | 35.0% | |
| ! | AACAATAAGCTAGGTGTTGT+GGG | - | chr3_3:48760447-48760466 | None:intergenic | 35.0% |
| ! | AAACAATAAGCTAGGTGTTG+TGG | - | chr3_3:48760448-48760467 | None:intergenic | 35.0% |
| ! | TTTTCAGCTTCCAAAGGTTT+TGG | + | chr3_3:48760484-48760503 | Msa0455720:intron | 35.0% |
| ! | TTTCAGCTTCCAAAGGTTTT+GGG | + | chr3_3:48760485-48760504 | Msa0455720:intron | 35.0% |
| GAATTGAAACCCAAAACCTT+TGG | - | chr3_3:48760497-48760516 | None:intergenic | 35.0% | |
| !! | TTCGGTTGATAGGGTATTAT+TGG | + | chr3_3:48760514-48760533 | Msa0455720:CDS | 35.0% |
| ATATAACCTGCAGACACAAA+CGG | - | chr3_3:48760632-48760651 | None:intergenic | 35.0% | |
| !!! | AGTTTTGACTGACTCATCTT+TGG | - | chr3_3:48760655-48760674 | None:intergenic | 35.0% |
| CACAAGTAATCTGCATTTGA+AGG | + | chr3_3:48760938-48760957 | Msa0455720:intron | 35.0% | |
| TTGATTATGTGCTCAAAAGG+AGG | + | chr3_3:48761330-48761349 | Msa0455720:CDS | 35.0% | |
| TGATTATGTGCTCAAAAGGA+GGG | + | chr3_3:48761331-48761350 | Msa0455720:CDS | 35.0% | |
| CTGTCAGGTTTACAAAGTTT+AGG | + | chr3_3:48761469-48761488 | Msa0455720:intron | 35.0% | |
| CGTCTTGTCTTATCTAATGA+AGG | - | chr3_3:48761510-48761529 | None:intergenic | 35.0% | |
| !!! | TGGCTGTTTTTGACATGTAT+AGG | + | chr3_3:48761812-48761831 | Msa0455720:intron | 35.0% |
| !! | ACAACGGGGATATTTTGAAA+CGG | - | chr3_3:48762006-48762025 | None:intergenic | 35.0% |
| !! | AAATATCAAGCGCTGAACAA+CGG | - | chr3_3:48762022-48762041 | None:intergenic | 35.0% |
| TCAATATCACCTTCTGCAAT+CGG | - | chr3_3:48762073-48762092 | None:intergenic | 35.0% | |
| AGCAAATGTCAAAGAAGCTT+TGG | + | chr3_3:48762338-48762357 | Msa0455720:intron | 35.0% | |
| !!! | ACATCATTACTTGGTTTTGG+GGG | - | chr3_3:48762399-48762418 | None:intergenic | 35.0% |
| CAATTATAGCGCAGAATTGA+CGG | + | chr3_3:48762733-48762752 | Msa0455720:three_prime_UTR | 35.0% | |
| !!! | AGTATGGAGAGGTACTTTTT+AGG | + | chr3_3:48762919-48762938 | Msa0455720:three_prime_UTR | 35.0% |
| GATTGGAGAAGAGAGATTGA+AGG | - | chr3_3:48755652-48755671 | None:intergenic | 40.0% | |
| !!! | ACTTTTTTGGGGGCTTTTTG+AGG | - | chr3_3:48755721-48755740 | None:intergenic | 40.0% |
| GAAGTGGAATCGTCTTTGAT+TGG | - | chr3_3:48755754-48755773 | None:intergenic | 40.0% | |
| TTCTTCTTCGGATTCAGAAG+TGG | - | chr3_3:48755770-48755789 | None:intergenic | 40.0% | |
| CTACAACATCTCGAACTTGA+TGG | + | chr3_3:48755802-48755821 | Msa0455720:CDS | 40.0% | |
| !! | TTCTGATTTGGAATCTGGGT+CGG | + | chr3_3:48755998-48756017 | Msa0455720:CDS | 40.0% |
| AATATCTTCCTCACCCGATT+CGG | - | chr3_3:48756045-48756064 | None:intergenic | 40.0% | |
| AAAAAGGGAGAGAGATAGCA+AGG | + | chr3_3:48756091-48756110 | Msa0455720:CDS | 40.0% | |
| AGAACTTATCAGGGTCAGTT+TGG | - | chr3_3:48756656-48756675 | None:intergenic | 40.0% | |
| ! | ATCAGAATTGACTTCGACTC+GGG | - | chr3_3:48756817-48756836 | None:intergenic | 40.0% |
| TGTAGATTGGAAAGATCTGG+GGG | - | chr3_3:48757068-48757087 | None:intergenic | 40.0% | |
| CTGTAGATTGGAAAGATCTG+GGG | - | chr3_3:48757069-48757088 | None:intergenic | 40.0% | |
| !! | TAAGGCATTGAGACAAGATG+GGG | + | chr3_3:48757327-48757346 | Msa0455720:CDS | 40.0% |
| ! | GTTTCTAATCGGTGCTTTAG+TGG | + | chr3_3:48757414-48757433 | Msa0455720:CDS | 40.0% |
| GTGTTTGTCCTCAGACATAT+AGG | - | chr3_3:48757621-48757640 | None:intergenic | 40.0% | |
| !! | CACGTCTATTTCTGTCACTT+TGG | + | chr3_3:48757652-48757671 | Msa0455720:intron | 40.0% |
| TGTAAGCTCAATTGGGAACA+TGG | - | chr3_3:48757702-48757721 | None:intergenic | 40.0% | |
| GCAGATGTCTTGATAAACAG+AGG | + | chr3_3:48757764-48757783 | Msa0455720:CDS | 40.0% | |
| !! | ACTTTTGACCATTTGCTGAG+AGG | - | chr3_3:48757803-48757822 | None:intergenic | 40.0% |
| CTCAGCAAATGGTCAAAAGT+AGG | + | chr3_3:48757803-48757822 | Msa0455720:intron | 40.0% | |
| TAAAAACCAGCCATGTACTC+TGG | - | chr3_3:48757969-48757988 | None:intergenic | 40.0% | |
| !!! | GTACATGGCTGGTTTTTACA+TGG | + | chr3_3:48757971-48757990 | Msa0455720:CDS | 40.0% |
| !!! | ATGGCTGGTTTTTACATGGT+AGG | + | chr3_3:48757975-48757994 | Msa0455720:intron | 40.0% |
| ! | TAGTTCTTTTCTGCCTGTGA+TGG | + | chr3_3:48758094-48758113 | Msa0455720:CDS | 40.0% |
| ! | ACAATCCTCTCCTTTTCTTG+AGG | - | chr3_3:48758128-48758147 | None:intergenic | 40.0% |
| TCTAACATTTGGACACAGCT+TGG | - | chr3_3:48758190-48758209 | None:intergenic | 40.0% | |
| ! | TGACATTTTACCGATGTCCA+TGG | + | chr3_3:48758475-48758494 | Msa0455720:intron | 40.0% |
| GAGTCAATTTCCATGGACAT+CGG | - | chr3_3:48758488-48758507 | None:intergenic | 40.0% | |
| GAAGCTTGAGTCAATTTCCA+TGG | - | chr3_3:48758495-48758514 | None:intergenic | 40.0% | |
| CTAAAAGGGATACTGCACAA+CGG | - | chr3_3:48758551-48758570 | None:intergenic | 40.0% | |
| ! | TGTGCAGTATCCCTTTTAGA+TGG | + | chr3_3:48758552-48758571 | Msa0455720:intron | 40.0% |
| ! | CAGTATCCCTTTTAGATGGA+TGG | + | chr3_3:48758556-48758575 | Msa0455720:intron | 40.0% |
| AGGGCAGCCTAATAAGTAAT+AGG | - | chr3_3:48758755-48758774 | None:intergenic | 40.0% | |
| CAAGAGCAGAACTGGTTATA+AGG | - | chr3_3:48758775-48758794 | None:intergenic | 40.0% | |
| !! | TGAACAGAAAGCGTTCTCAT+TGG | - | chr3_3:48758799-48758818 | None:intergenic | 40.0% |
| ! | GAAGCTGCACTTTTGCAAAA+GGG | - | chr3_3:48759295-48759314 | None:intergenic | 40.0% |
| ! | AGAAGCTGCACTTTTGCAAA+AGG | - | chr3_3:48759296-48759315 | None:intergenic | 40.0% |
| TGCTTTCTCTGCATAGTTGT+AGG | + | chr3_3:48759486-48759505 | Msa0455720:intron | 40.0% | |
| ACTGTAGTCTCCAACTATGA+TGG | + | chr3_3:48759864-48759883 | Msa0455720:CDS | 40.0% | |
| CTGTAGTCTCCAACTATGAT+GGG | + | chr3_3:48759865-48759884 | Msa0455720:CDS | 40.0% | |
| TACAAGAACTGTAAGATGCC+GGG | + | chr3_3:48760131-48760150 | Msa0455720:intron | 40.0% | |
| AAAATGGTTGTGATCACAGC+AGG | + | chr3_3:48760218-48760237 | Msa0455720:intron | 40.0% | |
| ACTGGAAAATTACTCCCTTC+TGG | + | chr3_3:48760271-48760290 | Msa0455720:intron | 40.0% | |
| TGCTCACGTATATCTATACC+AGG | - | chr3_3:48760360-48760379 | None:intergenic | 40.0% | |
| TGGGTTTCAATTCGGTTGAT+AGG | + | chr3_3:48760504-48760523 | Msa0455720:CDS | 40.0% | |
| ! | GGGTTTCAATTCGGTTGATA+GGG | + | chr3_3:48760505-48760524 | Msa0455720:CDS | 40.0% |
| GAAATGTGCTCATCTACAGA+AGG | + | chr3_3:48760698-48760717 | Msa0455720:CDS | 40.0% | |
| ! | TTTGGGACTATGACTATGAG+AGG | + | chr3_3:48760737-48760756 | Msa0455720:intron | 40.0% |
| ! | ATTACTTGTGTGCTGGTAGA+GGG | - | chr3_3:48760928-48760947 | None:intergenic | 40.0% |
| AATGCAGATTACTTGTGTGC+TGG | - | chr3_3:48760935-48760954 | None:intergenic | 40.0% | |
| GACATTCAATCAGGATCAAC+TGG | + | chr3_3:48761026-48761045 | Msa0455720:intron | 40.0% | |
| GGAGCTCCTACAAAAGAAAA+AGG | - | chr3_3:48761124-48761143 | None:intergenic | 40.0% | |
| TGTGACATTTGTTCTCTGTC+AGG | + | chr3_3:48761454-48761473 | Msa0455720:intron | 40.0% | |
| TCAAACTAAACCAGTAGCCA+CGG | - | chr3_3:48761869-48761888 | None:intergenic | 40.0% | |
| !! | AATATCAAGCGCTGAACAAC+GGG | - | chr3_3:48762021-48762040 | None:intergenic | 40.0% |
| ! | TTAAAGACACCGATTGCAGA+AGG | + | chr3_3:48762061-48762080 | Msa0455720:intron | 40.0% |
| ! | AATGTTTCTGATGTTGCAGC+AGG | - | chr3_3:48762171-48762190 | None:intergenic | 40.0% |
| TGAAAAAGAAACCGAGCTTG+TGG | + | chr3_3:48762200-48762219 | Msa0455720:CDS | 40.0% | |
| GACGACGATAAACCTAGTAA+TGG | + | chr3_3:48762225-48762244 | Msa0455720:CDS | 40.0% | |
| TTCTTCCTCTTCTTGGATTC+AGG | - | chr3_3:48762282-48762301 | None:intergenic | 40.0% | |
| !!! | CATCATTACTTGGTTTTGGG+GGG | - | chr3_3:48762398-48762417 | None:intergenic | 40.0% |
| TGAACCTAAACCCAAGAAGA+GGG | + | chr3_3:48762443-48762462 | Msa0455720:CDS | 40.0% | |
| ! | TTCCTTTTCTCCCTCTTCTT+GGG | - | chr3_3:48762456-48762475 | None:intergenic | 40.0% |
| ! | TTTCCTTTTCTCCCTCTTCT+TGG | - | chr3_3:48762457-48762476 | None:intergenic | 40.0% |
| GAAATCTCTTCTCTAGATGG+AGG | - | chr3_3:48762480-48762499 | None:intergenic | 40.0% | |
| GAGAAGAGATTTCAAAAGCC+AGG | + | chr3_3:48762487-48762506 | Msa0455720:CDS | 40.0% | |
| ACGGAAGACTCCATCAATAT+GGG | + | chr3_3:48762752-48762771 | Msa0455720:three_prime_UTR | 40.0% | |
| GCTGTAAAATCAGTATGGAG+AGG | + | chr3_3:48762908-48762927 | Msa0455720:three_prime_UTR | 40.0% | |
| CTCTCTTCTCCAATCTCCAA+TGG | + | chr3_3:48755657-48755676 | Msa0455720:exon | 45.0% | |
| !! | TGAGGTTTGACTGGCTTTGA+AGG | - | chr3_3:48755703-48755722 | None:intergenic | 45.0% |
| CTGTGGTGCTTCTTCTTCTT+CGG | - | chr3_3:48755782-48755801 | None:intergenic | 45.0% | |
| AGTTCGAGATGTTGTAGCTG+TGG | - | chr3_3:48755799-48755818 | None:intergenic | 45.0% | |
| !! | TCTGATTTGGAATCTGGGTC+GGG | + | chr3_3:48755999-48756018 | Msa0455720:CDS | 45.0% |
| CGAGGATGATGATTCCGAAT+CGG | + | chr3_3:48756028-48756047 | Msa0455720:CDS | 45.0% | |
| GAGGATGATGATTCCGAATC+GGG | + | chr3_3:48756029-48756048 | Msa0455720:CDS | 45.0% | |
| GGTTATCATGACAAGCGCTT+TGG | + | chr3_3:48756755-48756774 | Msa0455720:intron | 45.0% | |
| CTGTTAGGAACTTGAGGAAG+AGG | + | chr3_3:48757034-48757053 | Msa0455720:intron | 45.0% | |
| TTGGAAAGAACACGGACAAC+TGG | - | chr3_3:48757304-48757323 | None:intergenic | 45.0% | |
| ! | TCTAATCGGTGCTTTAGTGG+AGG | + | chr3_3:48757417-48757436 | Msa0455720:CDS | 45.0% |
| GTTTCCAGTCGTTGAACTGA+TGG | + | chr3_3:48757566-48757585 | Msa0455720:CDS | 45.0% | |
| AGTTCCATCAGTTCAACGAC+TGG | - | chr3_3:48757573-48757592 | None:intergenic | 45.0% | |
| ! | TATAGGGCGAGGCTTTTCAA+AGG | - | chr3_3:48757604-48757623 | None:intergenic | 45.0% |
| TCAGACACGAAGACGAGATT+TGG | + | chr3_3:48757742-48757761 | Msa0455720:intron | 45.0% | |
| ATCTGGATCCTCTCAGCAAA+TGG | + | chr3_3:48757792-48757811 | Msa0455720:CDS | 45.0% | |
| AGCAGGCCATCCATCTAAAA+GGG | - | chr3_3:48758565-48758584 | None:intergenic | 45.0% | |
| CAACATTTCGTACTTGCAGC+AGG | - | chr3_3:48758582-48758601 | None:intergenic | 45.0% | |
| TACGAAATGTTGTGCGCTGT+TGG | + | chr3_3:48758590-48758609 | Msa0455720:intron | 45.0% | |
| TCATTGGACAAGAGCAGAAC+TGG | - | chr3_3:48758783-48758802 | None:intergenic | 45.0% | |
| GCTGCTCTAATGAAGAACTC+AGG | + | chr3_3:48758989-48759008 | Msa0455720:CDS | 45.0% | |
| TACGCTTTCAGCATCACCTT+GGG | + | chr3_3:48759546-48759565 | Msa0455720:intron | 45.0% | |
| !! | GCAGTCAGAGATTTTAGTCG+TGG | - | chr3_3:48759816-48759835 | None:intergenic | 45.0% |
| ACTGCGAATCTGCATAGGAT+GGG | + | chr3_3:48759831-48759850 | Msa0455720:CDS | 45.0% | |
| ! | AGTCTCCAACTATGATGGGA+AGG | + | chr3_3:48759869-48759888 | Msa0455720:CDS | 45.0% |
| TACCTCCTTCCCATCATAGT+TGG | - | chr3_3:48759877-48759896 | None:intergenic | 45.0% | |
| AAGTACGACAGAGAGCTAGA+TGG | - | chr3_3:48759981-48760000 | None:intergenic | 45.0% | |
| ACAAGAACTGTAAGATGCCG+GGG | + | chr3_3:48760132-48760151 | Msa0455720:intron | 45.0% | |
| TATCATCTAAATGCAGCCCC+CGG | - | chr3_3:48760152-48760171 | None:intergenic | 45.0% | |
| ATGGGAGCTACTTGAATCAC+TGG | - | chr3_3:48760396-48760415 | None:intergenic | 45.0% | |
| CTTAAACCGTTTGTGTCTGC+AGG | + | chr3_3:48760623-48760642 | Msa0455720:intron | 45.0% | |
| GTTCAAGGAACGGTTACACT+AGG | - | chr3_3:48760817-48760836 | None:intergenic | 45.0% | |
| ! | GATTACTTGTGTGCTGGTAG+AGG | - | chr3_3:48760929-48760948 | None:intergenic | 45.0% |
| CCATGTCAATTGCAGCAAGA+AGG | - | chr3_3:48761145-48761164 | None:intergenic | 45.0% | |
| CCTTCTTGCTGCAATTGACA+TGG | + | chr3_3:48761142-48761161 | Msa0455720:CDS | 45.0% | |
| ATGCTCAATCATGGTTGCTG+AGG | + | chr3_3:48761208-48761227 | Msa0455720:CDS | 45.0% | |
| CAAAAGGAGGGATGTAAAGC+TGG | + | chr3_3:48761343-48761362 | Msa0455720:CDS | 45.0% | |
| ! | GATGTAAAGCTGGTTCCTTG+TGG | + | chr3_3:48761353-48761372 | Msa0455720:CDS | 45.0% |
| GTTCCTTGTGGACTTGACTT+TGG | + | chr3_3:48761365-48761384 | Msa0455720:CDS | 45.0% | |
| GGGAAAAACAATCAGTACCC+TGG | - | chr3_3:48761395-48761414 | None:intergenic | 45.0% | |
| CTATCCACACGTACACAACA+TGG | + | chr3_3:48761533-48761552 | Msa0455720:CDS | 45.0% | |
| !!! | GGACGGGTTTTTTGTTGCAA+AGG | + | chr3_3:48761554-48761573 | Msa0455720:CDS | 45.0% |
| !! | TACAAGATGGTGGACCATTG+AGG | + | chr3_3:48761771-48761790 | Msa0455720:intron | 45.0% |
| !! | ACAAGATGGTGGACCATTGA+GGG | + | chr3_3:48761772-48761791 | Msa0455720:intron | 45.0% |
| ACTAACAGCATAGCCCTCAA+TGG | - | chr3_3:48761788-48761807 | None:intergenic | 45.0% | |
| ! | GGGCTATGCTGTTAGTTTCT+TGG | + | chr3_3:48761792-48761811 | Msa0455720:intron | 45.0% |
| ! | GGATGTTTTGTATAGTCCCG+TGG | + | chr3_3:48761849-48761868 | Msa0455720:intron | 45.0% |
| CAAACTAAACCAGTAGCCAC+GGG | - | chr3_3:48761868-48761887 | None:intergenic | 45.0% | |
| !! | ATATCAAGCGCTGAACAACG+GGG | - | chr3_3:48762020-48762039 | None:intergenic | 45.0% |
| ! | CTGATGTTGCAGCAGGTTTT+GGG | - | chr3_3:48762164-48762183 | None:intergenic | 45.0% |
| ! | TCTGATGTTGCAGCAGGTTT+TGG | - | chr3_3:48762165-48762184 | None:intergenic | 45.0% |
| AAAAGAAACCGAGCTTGTGG+TGG | + | chr3_3:48762203-48762222 | Msa0455720:CDS | 45.0% | |
| CTGAACCTGAATCCAAGAAG+AGG | + | chr3_3:48762274-48762293 | Msa0455720:CDS | 45.0% | |
| TTCTTCCTCTTCTTGGAGTC+AGG | - | chr3_3:48762366-48762385 | None:intergenic | 45.0% | |
| CTGAACCTAAACCCAAGAAG+AGG | + | chr3_3:48762442-48762461 | Msa0455720:CDS | 45.0% | |
| TTCTCCCTCTTCTTGGGTTT+AGG | - | chr3_3:48762450-48762469 | None:intergenic | 45.0% | |
| AACCCAAGAAGAGGGAGAAA+AGG | + | chr3_3:48762451-48762470 | Msa0455720:CDS | 45.0% | |
| ! | ATTTTGCGATTCCTGCAGAG+AGG | + | chr3_3:48762602-48762621 | Msa0455720:intron | 45.0% |
| CTGCGCTATAATTGCACAGT+TGG | - | chr3_3:48762727-48762746 | None:intergenic | 45.0% | |
| GACGGAAGACTCCATCAATA+TGG | + | chr3_3:48762751-48762770 | Msa0455720:three_prime_UTR | 45.0% | |
| CCTCAGTACTCCCATATTGA+TGG | - | chr3_3:48762765-48762784 | None:intergenic | 45.0% | |
| !! | CCATCAATATGGGAGTACTG+AGG | + | chr3_3:48762762-48762781 | Msa0455720:three_prime_UTR | 45.0% |
| CATGTCGAAAGAATGTACCC+TGG | + | chr3_3:48762790-48762809 | Msa0455720:three_prime_UTR | 45.0% | |
| GAAAGAATGTACCCTGGAGT+CGG | + | chr3_3:48762796-48762815 | Msa0455720:three_prime_UTR | 45.0% | |
| CAAAACTGGGACCTTCGATT+AGG | - | chr3_3:48762830-48762849 | None:intergenic | 45.0% | |
| !! | AAAAAAGATATAATAATAAT+TGG | + | chr3_3:48758644-48758663 | Msa0455720:intron | 5.0% |
| TTCTTAGTTGCTGGCGCCAT+TGG | - | chr3_3:48755676-48755695 | None:intergenic | 50.0% | |
| !!! | GGGGCTTTTTGAGGTTTGAC+TGG | - | chr3_3:48755712-48755731 | None:intergenic | 50.0% |
| ! | TTTGGAATCTGGGTCGGGTT+CGG | + | chr3_3:48756004-48756023 | Msa0455720:CDS | 50.0% |
| TGATGATTCCGAATCGGGTG+AGG | + | chr3_3:48756034-48756053 | Msa0455720:CDS | 50.0% | |
| CGGGTGAGGAAGATATTGCT+AGG | + | chr3_3:48756048-48756067 | Msa0455720:CDS | 50.0% | |
| !! | TACTCTGGAGTGGCACCAAT+TGG | - | chr3_3:48757954-48757973 | None:intergenic | 50.0% |
| ! | TTTTCTGCCTGTGATGGCCT+TGG | + | chr3_3:48758100-48758119 | Msa0455720:CDS | 50.0% |
| ! | CTCCTTTTCTTGAGGAGCCA+AGG | - | chr3_3:48758120-48758139 | None:intergenic | 50.0% |
| TGGCTCCTCAAGAAAAGGAG+AGG | + | chr3_3:48758120-48758139 | Msa0455720:CDS | 50.0% | |
| CCAATAGCCTCAGAACACCA+TGG | - | chr3_3:48758261-48758280 | None:intergenic | 50.0% | |
| !! | CCATGGTGTTCTGAGGCTAT+TGG | + | chr3_3:48758258-48758277 | Msa0455720:intron | 50.0% |
| CAGCAGGCCATCCATCTAAA+AGG | - | chr3_3:48758566-48758585 | None:intergenic | 50.0% | |
| GAAATGTTGTGCGCTGTTGG+TGG | + | chr3_3:48758593-48758612 | Msa0455720:intron | 50.0% | |
| GAAGCAGTGCTACACTGCTA+TGG | - | chr3_3:48759090-48759109 | None:intergenic | 50.0% | |
| GTACGCTTTCAGCATCACCT+TGG | + | chr3_3:48759545-48759564 | Msa0455720:intron | 50.0% | |
| CTCTGACTGCGAATCTGCAT+AGG | + | chr3_3:48759826-48759845 | Msa0455720:CDS | 50.0% | |
| GACTGCGAATCTGCATAGGA+TGG | + | chr3_3:48759830-48759849 | Msa0455720:CDS | 50.0% | |
| ! | CTCCAACTATGATGGGAAGG+AGG | + | chr3_3:48759872-48759891 | Msa0455720:CDS | 50.0% |
| ACGACAGAGAGCTAGATGGA+TGG | - | chr3_3:48759977-48759996 | None:intergenic | 50.0% | |
| CAAGAACTGTAAGATGCCGG+GGG | + | chr3_3:48760133-48760152 | Msa0455720:intron | 50.0% | |
| TTATTGGATGCCCCTTGCAG+TGG | + | chr3_3:48760530-48760549 | Msa0455720:CDS | 50.0% | |
| TTACCCCAGTTCCACTGCAA+GGG | - | chr3_3:48760544-48760563 | None:intergenic | 50.0% | |
| CGTCCAAAGTCAAGTCCACA+AGG | - | chr3_3:48761371-48761390 | None:intergenic | 50.0% | |
| GACTTGACTTTGGACGTCCA+GGG | + | chr3_3:48761375-48761394 | Msa0455720:CDS | 50.0% | |
| CCACACGTACACAACATGGA+CGG | + | chr3_3:48761537-48761556 | Msa0455720:CDS | 50.0% | |
| CACACGTACACAACATGGAC+GGG | + | chr3_3:48761538-48761557 | Msa0455720:CDS | 50.0% | |
| TTGTATAGTCCCGTGGCTAC+TGG | + | chr3_3:48761856-48761875 | Msa0455720:intron | 50.0% | |
| !!! | ATGTTGCAGCAGGTTTTGGG+TGG | - | chr3_3:48762161-48762180 | None:intergenic | 50.0% |
| TGGAACCTGACTCCAAGAAG+AGG | + | chr3_3:48762358-48762377 | Msa0455720:CDS | 50.0% | |
| AAGTCTCTTCTCCTCTCTGC+AGG | - | chr3_3:48762616-48762635 | None:intergenic | 50.0% | |
| TTGCTGGCGCCATTGGAGAT+TGG | - | chr3_3:48755669-48755688 | None:intergenic | 55.0% | |
| CGTCTTCGTCATCGCTTCCT+TGG | - | chr3_3:48755882-48755901 | None:intergenic | 55.0% | |
| GATGACGAAGACGACGACGA+AGG | + | chr3_3:48755889-48755908 | Msa0455720:CDS | 55.0% | |
| ! | TCGGTGCTTTAGTGGAGGTG+TGG | + | chr3_3:48757422-48757441 | Msa0455720:intron | 55.0% |
| AGCCTCGCCCTATATGTCTG+AGG | + | chr3_3:48757610-48757629 | Msa0455720:CDS | 55.0% | |
| GTCCTCAGACATATAGGGCG+AGG | - | chr3_3:48757615-48757634 | None:intergenic | 55.0% | |
| !! | TGGTGCCACTCCAGAGTACA+TGG | + | chr3_3:48757956-48757975 | Msa0455720:CDS | 55.0% |
| ! | ACCAGCCATGTACTCTGGAG+TGG | - | chr3_3:48757964-48757983 | None:intergenic | 55.0% |
| GGCCTTGGCTCCTCAAGAAA+AGG | + | chr3_3:48758115-48758134 | Msa0455720:CDS | 55.0% | |
| ATGCCCCTTGCAGTGGAACT+GGG | + | chr3_3:48760537-48760556 | Msa0455720:CDS | 55.0% | |
| TACCCCAGTTCCACTGCAAG+GGG | - | chr3_3:48760543-48760562 | None:intergenic | 55.0% | |
| CTTACCCCAGTTCCACTGCA+AGG | - | chr3_3:48760545-48760564 | None:intergenic | 55.0% | |
| GGACTTGACTTTGGACGTCC+AGG | + | chr3_3:48761374-48761393 | Msa0455720:CDS | 55.0% | |
| CCGTCCATGTTGTGTACGTG+TGG | - | chr3_3:48761540-48761559 | None:intergenic | 55.0% | |
| ATCGTCGTCCACCACAAGCT+CGG | - | chr3_3:48762214-48762233 | None:intergenic | 55.0% | |
| AGAATGTACCCTGGAGTCGG+TGG | + | chr3_3:48762799-48762818 | Msa0455720:three_prime_UTR | 55.0% | |
| CGGTGGCATGACCTAATCGA+AGG | + | chr3_3:48762816-48762835 | Msa0455720:three_prime_UTR | 55.0% | |
| TGAGACAAGATGGGGCGACG+AGG | + | chr3_3:48757335-48757354 | Msa0455720:CDS | 60.0% | |
| ACAAGATGGGGCGACGAGGA+AGG | + | chr3_3:48757339-48757358 | Msa0455720:CDS | 60.0% | |
| GCCACTCCAGAGTACATGGC+TGG | + | chr3_3:48757960-48757979 | Msa0455720:CDS | 60.0% | |
| TGAGGAGCCAAGGCCATCAC+AGG | - | chr3_3:48758110-48758129 | None:intergenic | 60.0% | |
| GATGCCCCTTGCAGTGGAAC+TGG | + | chr3_3:48760536-48760555 | Msa0455720:CDS | 60.0% | |
| TGCCCCTTGCAGTGGAACTG+GGG | + | chr3_3:48760538-48760557 | Msa0455720:CDS | 60.0% | |
| !! | AGGTCATGCCACCGACTCCA+GGG | - | chr3_3:48762810-48762829 | None:intergenic | 60.0% |
| !! | TAGGTCATGCCACCGACTCC+AGG | - | chr3_3:48762811-48762830 | None:intergenic | 60.0% |
| ATCTGGGTCGGGTTCGGACG+AGG | + | chr3_3:48756010-48756029 | Msa0455720:CDS | 65.0% | |
| GTGTGTTGCAGGGCTGCACC+TGG | + | chr3_3:48758947-48758966 | Msa0455720:intron | 65.0% | |
| TGTTGCAGGGCTGCACCTGG+TGG | + | chr3_3:48758950-48758969 | Msa0455720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48755623 | 48763083 | 48755623 | ID=Msa0455720;Name=Msa0455720 |
| chr3_3 | mRNA | 48755623 | 48763083 | 48755623 | ID=Msa0455720-mRNA-1;Parent=Msa0455720;Name=Msa0455720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=53|0.88|0.83|1|0.82|0.77|18|388|634 |
| chr3_3 | exon | 48755623 | 48755910 | 48755623 | ID=Msa0455720-mRNA-1:exon:9115;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48755991 | 48756193 | 48755991 | ID=Msa0455720-mRNA-1:exon:9116;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48757041 | 48757062 | 48757041 | ID=Msa0455720-mRNA-1:exon:9117;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48757305 | 48757438 | 48757305 | ID=Msa0455720-mRNA-1:exon:9118;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48757564 | 48757647 | 48757564 | ID=Msa0455720-mRNA-1:exon:9119;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48757746 | 48757820 | 48757746 | ID=Msa0455720-mRNA-1:exon:9120;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48757921 | 48757992 | 48757921 | ID=Msa0455720-mRNA-1:exon:9121;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48758083 | 48758156 | 48758083 | ID=Msa0455720-mRNA-1:exon:9122;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48758958 | 48759010 | 48758958 | ID=Msa0455720-mRNA-1:exon:9123;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48759784 | 48759893 | 48759784 | ID=Msa0455720-mRNA-1:exon:9124;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48760491 | 48760559 | 48760491 | ID=Msa0455720-mRNA-1:exon:9125;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48760645 | 48760719 | 48760645 | ID=Msa0455720-mRNA-1:exon:9126;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48761137 | 48761229 | 48761137 | ID=Msa0455720-mRNA-1:exon:9127;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48761317 | 48761396 | 48761317 | ID=Msa0455720-mRNA-1:exon:9128;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48761476 | 48761575 | 48761476 | ID=Msa0455720-mRNA-1:exon:9129;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48762144 | 48762324 | 48762144 | ID=Msa0455720-mRNA-1:exon:9130;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48762340 | 48762508 | 48762340 | ID=Msa0455720-mRNA-1:exon:9131;Parent=Msa0455720-mRNA-1 |
| chr3_3 | exon | 48762620 | 48763083 | 48762620 | ID=Msa0455720-mRNA-1:exon:9132;Parent=Msa0455720-mRNA-1 |
| chr3_3 | five_prime_UTR | 48755623 | 48755675 | 48755623 | ID=Msa0455720-mRNA-1:five_prime_utr;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48755676 | 48755910 | 48755676 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48755991 | 48756193 | 48755991 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48757041 | 48757062 | 48757041 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48757305 | 48757438 | 48757305 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48757564 | 48757647 | 48757564 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48757746 | 48757820 | 48757746 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48757921 | 48757992 | 48757921 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48758083 | 48758156 | 48758083 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48758958 | 48759010 | 48758958 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48759784 | 48759893 | 48759784 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48760491 | 48760559 | 48760491 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48760645 | 48760719 | 48760645 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48761137 | 48761229 | 48761137 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48761317 | 48761396 | 48761317 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48761476 | 48761575 | 48761476 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48762144 | 48762324 | 48762144 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48762340 | 48762508 | 48762340 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | CDS | 48762620 | 48762695 | 48762620 | ID=Msa0455720-mRNA-1:cds;Parent=Msa0455720-mRNA-1 |
| chr3_3 | three_prime_UTR | 48762696 | 48763083 | 48762696 | ID=Msa0455720-mRNA-1:three_prime_utr;Parent=Msa0455720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
