AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933300 MtrunA17_Chr6g0450161 95.222 607 26 1 1 607 1 604 0.0 1159
Msa0933300 MtrunA17_Chr4g0039781 69.381 614 176 3 1 606 1 610 0.0 838
Msa0933300 MtrunA17_Chr5g0404291 60.690 580 212 5 35 603 50 624 0.0 677
Msa0933300 MtrunA17_Chr4g0038101 33.766 154 94 4 365 512 758 909 4.95e-17 85.5
Msa0933300 MtrunA17_Chr8g0387641 28.502 207 118 5 365 566 557 738 6.01e-16 81.6
Msa0933300 MtrunA17_Chr3g0116131 30.622 209 111 6 365 566 939 1120 1.79e-15 80.5
Msa0933300 MtrunA17_Chr3g0141901 33.553 152 93 5 365 509 172 322 1.97e-15 78.6
Msa0933300 MtrunA17_Chr3g0127431 34.868 152 92 5 364 510 120 269 2.01e-15 78.6
Msa0933300 MtrunA17_Chr1g0195731 29.665 209 113 6 365 566 971 1152 3.11e-15 79.7
Msa0933300 MtrunA17_Chr3g0145011 33.553 152 93 5 365 509 175 325 3.58e-15 77.8
Msa0933300 MtrunA17_Chr8g0345461 27.799 259 151 10 275 509 105 351 3.80e-15 78.2
Msa0933300 MtrunA17_Chr1g0195741 29.665 209 113 6 365 566 975 1156 5.00e-15 79.0
Msa0933300 MtrunA17_Chr7g0264521 29.577 213 116 8 360 564 510 696 5.46e-15 78.6
Msa0933300 MtrunA17_Chr7g0264521 30.872 149 98 4 365 509 242 389 4.28e-14 75.9
Msa0933300 MtrunA17_Chr1g0200081 27.799 259 151 10 275 509 115 361 6.11e-15 77.4
Msa0933300 MtrunA17_Chr1g0204031 35.714 154 91 4 365 512 594 745 6.23e-15 78.6
Msa0933300 MtrunA17_Chr5g0397121 28.502 207 118 5 365 566 549 730 7.76e-15 78.2
Msa0933300 MtrunA17_Chr4g0026631 28.019 207 121 5 365 567 162 344 9.19e-15 77.0
Msa0933300 MtrunA17_Chr1g0180791 29.245 212 118 8 360 564 509 695 1.04e-14 77.8
Msa0933300 MtrunA17_Chr1g0180791 30.872 149 98 4 365 509 241 388 1.39e-13 73.9
Msa0933300 MtrunA17_Chr3g0127401 32.911 158 87 4 364 510 117 266 1.25e-14 76.3
Msa0933300 MtrunA17_Chr4g0050561 31.683 202 105 8 367 560 194 370 1.29e-14 76.3
Msa0933300 MtrunA17_Chr2g0327121 31.875 160 101 5 360 512 511 669 1.38e-14 77.4
Msa0933300 MtrunA17_Chr2g0327121 30.233 172 103 6 342 509 232 390 7.68e-13 71.6
Msa0933300 MtrunA17_Chr2g0289231 33.766 154 97 4 367 517 343 494 1.72e-14 76.6
Msa0933300 MtrunA17_Chr6g0462581 32.468 154 96 4 365 512 536 687 2.21e-14 76.6
Msa0933300 MtrunA17_Chr1g0192151 35.032 157 94 5 360 509 198 353 2.79e-14 75.5
Msa0933300 MtrunA17_Chr2g0321241 27.053 207 123 5 365 567 167 349 2.91e-14 75.5
Msa0933300 MtrunA17_Chr4g0014731 35.032 157 94 5 360 509 199 354 3.47e-14 75.1
Msa0933300 MtrunA17_Chr4g0004121 27.488 211 117 6 365 564 277 462 4.70e-14 75.1
Msa0933300 MtrunA17_Chr8g0362771 30.049 203 112 6 367 564 274 451 1.12e-13 74.3
Msa0933300 MtrunA17_Chr1g0202381 33.333 153 96 4 365 512 505 656 3.35e-13 72.8
Msa0933300 MtrunA17_Chr6g0459561 28.436 211 114 8 363 564 415 597 1.71e-12 70.5
Msa0933300 MtrunA17_Chr8g0357301 31.847 157 89 4 367 509 507 659 3.07e-12 70.1
Msa0933300 MtrunA17_Chr7g0255721 27.830 212 122 7 359 564 715 901 5.07e-12 69.3
Msa0933300 MtrunA17_Chr2g0277831 33.537 164 97 7 365 519 278 438 3.37e-11 66.6
Msa0933300 MtrunA17_Chr8g0388371 31.515 165 97 5 360 509 434 597 3.46e-11 66.6
Msa0933300 MtrunA17_Chr7g0217421 28.641 206 113 7 367 564 76 255 3.94e-11 65.5
Msa0933300 MtrunA17_Chr7g0246111 31.690 142 92 3 365 502 247 387 4.21e-11 65.9
Msa0933300 MtrunA17_Chr7g0255641 27.652 264 149 12 351 603 684 916 5.19e-11 65.9
Msa0933300 MtrunA17_Chr3g0086401 27.315 216 138 7 370 581 426 626 7.56e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933300 AT3G03060.1 74.650 572 141 2 35 605 58 626 0.0 890
Msa0933300 AT5G16930.1 70.840 607 165 3 10 605 33 638 0.0 881
Msa0933300 AT2G18330.1 63.385 579 203 5 31 602 52 628 0.0 697
Msa0933300 AT4G36580.1 60.764 576 219 4 32 603 51 623 0.0 681
Msa0933300 AT3G19740.1 30.841 214 113 7 365 572 738 922 1.25e-18 90.9
Msa0933300 AT1G50140.2 30.841 214 113 7 365 572 726 910 3.19e-18 89.7
Msa0933300 AT1G50140.5 30.841 214 113 7 365 572 726 910 3.19e-18 89.7
Msa0933300 AT1G50140.3 30.841 214 113 7 365 572 748 932 3.20e-18 89.7
Msa0933300 AT1G50140.1 30.841 214 113 7 365 572 748 932 3.20e-18 89.7
Msa0933300 AT1G50140.4 30.841 214 113 7 365 572 748 932 3.20e-18 89.7
Msa0933300 AT5G19990.1 32.673 202 103 8 367 560 196 372 5.66e-16 80.9
Msa0933300 AT5G19990.3 32.673 202 103 8 367 560 196 372 5.66e-16 80.9
Msa0933300 AT5G19990.2 32.673 202 103 8 367 560 138 314 6.81e-16 80.1
Msa0933300 AT5G20000.1 32.673 202 103 8 367 560 196 372 8.48e-16 80.5
Msa0933300 AT3G53230.1 30.047 213 115 9 360 564 509 695 1.35e-15 80.9
Msa0933300 AT3G53230.1 30.872 149 98 4 365 509 241 388 8.69e-14 75.1
Msa0933300 AT1G45000.1 33.553 152 93 5 365 509 172 322 1.37e-15 79.7
Msa0933300 AT4G04180.1 36.601 153 79 5 367 509 362 506 1.40e-15 80.5
Msa0933300 AT4G04180.2 36.601 153 79 5 367 509 357 501 1.43e-15 80.5
Msa0933300 AT1G02890.1 29.665 209 113 6 365 566 978 1159 4.27e-15 79.7
Msa0933300 AT1G53750.1 27.799 259 151 10 275 509 105 351 5.84e-15 77.8
Msa0933300 AT5G53540.1 35.065 154 89 4 364 510 120 269 5.89e-15 77.8
Msa0933300 AT5G03340.1 33.125 160 99 6 360 512 508 666 6.29e-15 79.0
Msa0933300 AT5G03340.1 30.872 149 98 4 365 509 240 387 2.09e-13 73.9
Msa0933300 AT4G28000.3 32.692 156 93 4 365 512 553 704 7.05e-15 78.6
Msa0933300 AT4G28000.2 32.692 156 93 4 365 512 553 704 7.54e-15 78.6
Msa0933300 AT5G43010.1 32.895 152 94 5 365 509 172 322 7.59e-15 77.4
Msa0933300 AT4G28000.1 32.692 156 93 4 365 512 551 702 7.72e-15 78.6
Msa0933300 AT1G64110.2 32.051 156 94 4 365 512 554 705 1.05e-14 78.2
Msa0933300 AT1G64110.4 32.051 156 94 4 365 512 554 705 1.05e-14 78.2
Msa0933300 AT1G53780.2 34.810 158 95 5 359 509 388 544 1.09e-14 77.8
Msa0933300 AT1G64110.5 32.051 156 94 4 365 512 552 703 1.11e-14 78.2
Msa0933300 AT1G64110.3 32.051 156 94 4 365 512 552 703 1.11e-14 78.2
Msa0933300 AT1G53780.3 33.146 178 103 6 347 509 346 522 1.17e-14 77.8
Msa0933300 AT1G53780.1 33.146 178 103 6 347 509 347 523 1.17e-14 77.8
Msa0933300 AT1G53780.4 33.146 178 103 6 347 509 347 523 1.17e-14 77.8
Msa0933300 AT1G64110.1 32.051 156 94 4 365 512 549 700 1.21e-14 77.8
Msa0933300 AT4G02480.1 29.665 209 113 6 365 566 997 1178 1.57e-14 77.8
Msa0933300 AT3G09840.1 29.577 213 117 9 360 564 508 695 1.95e-14 77.4
Msa0933300 AT3G09840.1 32.000 150 95 6 365 509 240 387 2.24e-13 73.9
Msa0933300 AT4G27680.1 36.129 155 86 6 364 510 117 266 2.04e-14 75.9
Msa0933300 AT5G52882.1 33.117 154 95 4 365 512 550 701 2.22e-14 77.0
Msa0933300 AT1G09100.1 35.032 157 94 5 360 509 198 353 1.04e-13 73.9
Msa0933300 AT1G80350.1 27.488 211 117 6 365 564 271 456 2.69e-13 73.2
Msa0933300 AT3G05530.1 34.395 157 95 5 360 509 199 354 2.71e-13 72.8
Msa0933300 AT2G27600.1 26.570 207 124 5 365 567 164 346 2.80e-13 72.8
Msa0933300 AT4G24860.1 28.708 209 115 6 365 566 854 1035 2.80e-13 73.9
Msa0933300 AT4G24860.4 28.708 209 115 6 365 566 827 1008 2.87e-13 73.6
Msa0933300 AT4G24860.3 28.708 209 115 6 365 566 852 1033 3.05e-13 73.6
Msa0933300 AT4G24860.2 28.708 209 115 6 365 566 850 1031 3.56e-13 73.6
Msa0933300 AT1G79560.2 26.073 303 169 12 329 604 485 759 8.69e-13 72.0
Msa0933300 AT1G79560.3 26.073 303 169 12 329 604 485 759 1.11e-12 71.6
Msa0933300 AT1G79560.1 26.073 303 169 12 329 604 485 759 1.15e-12 71.6
Msa0933300 AT3G02450.1 34.228 149 91 5 367 510 368 514 1.35e-12 71.2
Msa0933300 AT1G62130.2 29.064 203 110 6 365 566 780 949 1.67e-12 71.2
Msa0933300 AT1G62130.1 29.064 203 110 6 365 566 787 956 1.81e-12 71.2
Msa0933300 AT3G27120.1 28.436 211 114 7 363 564 433 615 2.33e-12 70.5
Msa0933300 AT3G56690.1 28.155 206 118 7 365 565 417 597 4.44e-11 66.6

Find 159 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTGATGGGAAGATTT+TGG 0.152491 6_3:-1790673 Msa0933300:intron
GCCATTGTCTTCCCTGTTCC+TGG 0.205135 6_3:+1792296 None:intergenic
TCAAATAATGGAAAGGGTTT+TGG 0.219162 6_3:-1792431 Msa0933300:CDS
GGGAAGGTGCACGGGTTATT+TGG 0.224243 6_3:-1792583 Msa0933300:CDS
GGGATATGTTGATAGAATAT+TGG 0.232274 6_3:-1792561 Msa0933300:CDS
CCAGAATCTGTTTCAAATAA+TGG 0.246142 6_3:-1792443 Msa0933300:CDS
GGAAGGTGCACGGGTTATTT+GGG 0.252159 6_3:-1792582 Msa0933300:CDS
CCATTATTTGAAACAGATTC+TGG 0.258534 6_3:+1792443 None:intergenic
TGCTTCATCATATGCTAAAA+AGG 0.263247 6_3:-1795840 Msa0933300:intron
AATACTACCTTTGACCATAT+TGG 0.291759 6_3:-1793281 Msa0933300:CDS
CCACAAAAGATAGAGATTAA+AGG 0.293367 6_3:-1791000 Msa0933300:CDS
CCGTGAAGTTGTAGATTATA+AGG 0.298092 6_3:-1790842 Msa0933300:CDS
TAAACCCCTATTGGACTTCT+TGG 0.299729 6_3:+1791541 None:intergenic
GTCCTAGAATTTCCCTTGCC+TGG 0.304734 6_3:-1791123 Msa0933300:CDS
CGCCATTGAAGAAGAGGTTT+TGG 0.305620 6_3:+1796063 None:intergenic
AATCCAAGGAGTGCTTCTTC+TGG 0.327589 6_3:-1795914 Msa0933300:CDS
GCTCTTGGTTCCTTACTCTA+TGG 0.329815 6_3:+1793552 None:intergenic
GCATCAACAAAGAATAAAAT+TGG 0.330618 6_3:-1790812 Msa0933300:CDS
GGCGGTGGTGGCGGCGGTTA+AGG 0.332054 6_3:+1796012 None:intergenic
CCCCAGGCAAGGGAAATTCT+AGG 0.335721 6_3:+1791121 None:intergenic
CAGTTTCGCTATTTCCCTTC+CGG 0.338361 6_3:+1790927 None:intergenic
GGAAACAAGGCAAGCTGAAT+TGG 0.344892 6_3:-1795615 Msa0933300:CDS
TTCATGAATTATCATGGTTA+AGG 0.346779 6_3:+1790530 None:intergenic
GGATATGTTGATAGAATATT+GGG 0.347459 6_3:-1792560 Msa0933300:CDS
GGAGTGACTGCTCTGGCAGC+CGG 0.356065 6_3:-1792845 Msa0933300:CDS
AGAGACGGTGGCGGTGGTGG+CGG 0.374239 6_3:+1796003 None:intergenic
CAAGCTGGATCAAGAAAATC+TGG 0.381037 6_3:-1791048 Msa0933300:CDS
AGAAAAGGTTCTGAGGGTTT+TGG 0.381654 6_3:+1796099 None:intergenic
GATCCTGTACCTCTTGAAAA+AGG 0.386361 6_3:-1795887 Msa0933300:CDS
CTATATGTAACACATGATTC+AGG 0.393744 6_3:-1790589 Msa0933300:three_prime_UTR
AAGTCGAGAAAGGGTGCTTT+TGG 0.394444 6_3:+1792472 None:intergenic
GAGTGACTGCTCTGGCAGCC+GGG 0.400139 6_3:-1792844 Msa0933300:CDS
TCATGAATTATCATGGTTAA+GGG 0.401647 6_3:+1790531 None:intergenic
TAATCGAATGAAAGCACAAT+TGG 0.409012 6_3:-1795573 Msa0933300:CDS
TCCTAGAATTTCCCTTGCCT+GGG 0.409654 6_3:-1791122 Msa0933300:CDS
ATTGGGCCAAGAAGTCCAAT+AGG 0.417609 6_3:-1791547 Msa0933300:CDS
CACCAAAACCTCTTCTTCAA+TGG 0.417657 6_3:-1796065 Msa0933300:exon
TTATAGTGAAATCTTATTGA+AGG 0.417856 6_3:-1790643 Msa0933300:three_prime_UTR
CTTATTACGATCTGTTAGAA+TGG 0.422073 6_3:+1792886 None:intergenic
GATACACGAGTTGTTTGATT+GGG 0.423129 6_3:-1791564 Msa0933300:CDS
GAAAGAGACGGTGGCGGTGG+TGG 0.423161 6_3:+1796000 None:intergenic
GGTGAAGAATGGTGAAGAAA+AGG 0.423543 6_3:+1796084 None:intergenic
GACGGTGGCGGTGGTGGCGG+CGG 0.424736 6_3:+1796006 None:intergenic
ATGGCGAAAACCACTTTATC+CGG 0.429316 6_3:-1796046 Msa0933300:CDS
ATTTCCCTTGCCTGGGGAAG+AGG 0.433738 6_3:-1791115 Msa0933300:CDS
AGTGTCCAAGCTGCCGTGTA+TGG 0.437138 6_3:-1790898 Msa0933300:CDS
ACAGCACTTGCAAAAGCAAA+AGG 0.438572 6_3:-1793398 Msa0933300:CDS
CAGAGAGTTGGCTTACAAAT+CGG 0.447484 6_3:-1792270 Msa0933300:intron
TTGGGCCAAGAAGTCCAATA+GGG 0.448894 6_3:-1791546 Msa0933300:CDS
CAAGGACTATGTCTTTAGAT+TGG 0.454660 6_3:+1791205 None:intergenic
TCTGTTTCAAATAATGGAAA+GGG 0.454708 6_3:-1792437 Msa0933300:CDS
CCGTAGTTCATGAATTATCA+TGG 0.459136 6_3:+1790524 None:intergenic
CCTTATAATCTACAACTTCA+CGG 0.459905 6_3:+1790842 None:intergenic
CTGGTTTAGCAAGTCGAGAA+AGG 0.462717 6_3:+1792462 None:intergenic
AGATACACGAGTTGTTTGAT+TGG 0.464111 6_3:-1791565 Msa0933300:CDS
TCGAGAAAACGTGCCAGACC+AGG 0.465385 6_3:+1792496 None:intergenic
AGACCAGGGGTATTTCCCTC+TGG 0.471013 6_3:+1792511 None:intergenic
ATTGAGCGATGATATCATAA+AGG 0.472275 6_3:-1790977 Msa0933300:CDS
GCCCTTGCGACGAACCGTCC+TGG 0.475674 6_3:-1791183 Msa0933300:CDS
ATCTCAGATGGCTAAATATG+AGG 0.478813 6_3:-1793700 Msa0933300:CDS
CTAAATCACCCTTCTCAAGT+TGG 0.479623 6_3:+1793330 None:intergenic
AGGATGAGTTGGCAAGGAAG+AGG 0.479629 6_3:-1793680 Msa0933300:CDS
CACCAGGACGGTTCGTCGCA+AGG 0.481861 6_3:+1791181 None:intergenic
CGCTTCCATACACGGCAGCT+TGG 0.482291 6_3:+1790893 None:intergenic
ACCCGCTTTCGAAGATGAAT+CGG 0.491673 6_3:+1795943 None:intergenic
TGTTGCTCCACTCGGATCAC+AGG 0.494047 6_3:-1791597 Msa0933300:CDS
AAAATGAGTACCATAGAGTA+AGG 0.494834 6_3:-1793562 Msa0933300:CDS
TTGTCTTCCCTGTTCCTGGA+GGG 0.498774 6_3:+1792300 None:intergenic
GGCTAAATATGAGGATGAGT+TGG 0.500126 6_3:-1793691 Msa0933300:CDS
AGAGGGAAATACCCCTGGTC+TGG 0.500897 6_3:-1792509 Msa0933300:CDS
TGAAAACACAAAATTACATC+AGG 0.504750 6_3:-1792351 Msa0933300:CDS
CGCTCCTCTTCCCCAGGCAA+GGG 0.507955 6_3:+1791111 None:intergenic
GACGGTTCGTCGCAAGGGCA+AGG 0.508323 6_3:+1791187 None:intergenic
TGAAGAAGGAATGGCGCCAT+CGG 0.514941 6_3:+1795976 None:intergenic
GCAAGCTGAATTGGCTGCTA+AGG 0.515586 6_3:-1795606 Msa0933300:CDS
ATTTCCCTCTGGAGGACTCT+CGG 0.515937 6_3:+1792522 None:intergenic
TTCATGAACTACGGTGATTG+AGG 0.516702 6_3:-1790515 Msa0933300:three_prime_UTR
ATCTGTTTCAAATAATGGAA+AGG 0.518634 6_3:-1792438 Msa0933300:CDS
ACTACGAAAGCAAACTATAG+AGG 0.520051 6_3:-1793456 Msa0933300:CDS
AATCCAGAAGAAGCACTCCT+TGG 0.521894 6_3:+1795911 None:intergenic
CGATTTGTAAGCCAACTCTC+TGG 0.521968 6_3:+1792271 None:intergenic
GACAAGTACATAGCTCAAGC+TGG 0.523738 6_3:-1791063 Msa0933300:CDS
ACCGATTCATCTTCGAAAGC+GGG 0.525273 6_3:-1795944 Msa0933300:CDS
TGGTTTAGCAAGTCGAGAAA+GGG 0.525545 6_3:+1792463 None:intergenic
ACGCTCCTCTTCCCCAGGCA+AGG 0.527101 6_3:+1791110 None:intergenic
TCTAACAGATCGTAATAAGT+TGG 0.527875 6_3:-1792882 Msa0933300:CDS
TGGTGAAGAAAAGGTTCTGA+GGG 0.528739 6_3:+1796093 None:intergenic
TGCTGAAGATGAAGAAGGAA+TGG 0.530211 6_3:+1795967 None:intergenic
GAGGACTCTCGGATCAATGA+TGG 0.530746 6_3:+1792533 None:intergenic
CTTGAGCTATGTACTTGTCT+AGG 0.530944 6_3:+1791067 None:intergenic
GGAGAAAGAGACGGTGGCGG+TGG 0.532338 6_3:+1795997 None:intergenic
ACCAGGACGGTTCGTCGCAA+GGG 0.533090 6_3:+1791182 None:intergenic
GAAGGTGCACGGGTTATTTG+GGG 0.534601 6_3:-1792581 Msa0933300:CDS
TTGGATTATGCATTGATGAC+TGG 0.537644 6_3:-1791626 Msa0933300:CDS
TTCCCTTCCGGAAAATCCAT+CGG 0.538043 6_3:+1790939 None:intergenic
CCTCCAGAGGGAAATACCCC+TGG 0.539942 6_3:-1792514 Msa0933300:CDS
CTAATGTAGGGAAGGTGCAC+GGG 0.540661 6_3:-1792591 Msa0933300:intron
AAGTTGGTCGTAACAGTTGG+TGG 0.542001 6_3:-1792866 Msa0933300:CDS
TGAGATATTGAAGAAACAAG+AGG 0.542015 6_3:-1795636 Msa0933300:CDS
ACTACCTTTGACCATATTGG+AGG 0.546392 6_3:-1793278 Msa0933300:intron
TTAAAACGCTCCTCTTCCCC+AGG 0.548339 6_3:+1791105 None:intergenic
CCATGATAATTCATGAACTA+CGG 0.551545 6_3:-1790524 Msa0933300:three_prime_UTR
GGTTAAGGCTGAGAATAAAC+CGG 0.551769 6_3:+1796027 None:intergenic
TGAGAATAAACCGGATAAAG+TGG 0.552481 6_3:+1796036 None:intergenic
GACAATGGCTGCCAGAGAGT+TGG 0.552771 6_3:-1792282 Msa0933300:CDS
TAGTAAGAGAATTGAGCAGC+TGG 0.554062 6_3:-1792384 Msa0933300:CDS
CCTAATGTAGGGAAGGTGCA+CGG 0.555109 6_3:-1792592 Msa0933300:intron
CAGGAGAAACCAACTTGAGA+AGG 0.557237 6_3:-1793339 Msa0933300:CDS
AATGCCCTTCTCTTTCGTAC+CGG 0.559914 6_3:-1791231 Msa0933300:CDS
ATTGTCTTCCCTGTTCCTGG+AGG 0.560179 6_3:+1792299 None:intergenic
AAAGCAAACTATAGAGGAGA+AGG 0.564579 6_3:-1793450 Msa0933300:CDS
GTTGGCAAGGAAGAGGATGC+AGG 0.565436 6_3:-1793673 Msa0933300:intron
AGAAGATTCATCAATCAGAC+TGG 0.565440 6_3:-1793516 Msa0933300:CDS
GGAGGAGATGTTGCTCCACT+CGG 0.565757 6_3:-1791605 Msa0933300:CDS
ATTCTAGGACCTCATCAATA+CGG 0.565931 6_3:+1791136 None:intergenic
GCCACCGTCTCTTTCTCCGA+TGG 0.566191 6_3:-1795992 Msa0933300:CDS
AGTGACTGCTCTGGCAGCCG+GGG 0.566373 6_3:-1792843 Msa0933300:CDS
GGTCTGCTACAGCTGAATCA+AGG 0.566819 6_3:+1791157 None:intergenic
TCAATTCTCTTACTAAGAGA+AGG 0.575379 6_3:+1792392 None:intergenic
TCGGTTGCTGAAGATGAAGA+AGG 0.576794 6_3:+1795962 None:intergenic
TTTACCTCCAATATGGTCAA+AGG 0.577286 6_3:+1793274 None:intergenic
CAGCACTTGCAAAAGCAAAA+GGG 0.577360 6_3:-1793397 Msa0933300:CDS
AGTTGGTGGAGTGACTGCTC+TGG 0.577512 6_3:-1792852 Msa0933300:CDS
TGAAGAAACAAGAGGAAACA+AGG 0.578075 6_3:-1795628 Msa0933300:CDS
AATAAGTTGGTCGTAACAGT+TGG 0.580574 6_3:-1792869 Msa0933300:CDS
ACAGTTGTCGCTTCCATACA+CGG 0.583469 6_3:+1790885 None:intergenic
CGAGAAAACGTGCCAGACCA+GGG 0.583981 6_3:+1792497 None:intergenic
TCATGTGTTACATATAGTCA+TGG 0.585794 6_3:+1790595 None:intergenic
ATGGTGAAGAAAAGGTTCTG+AGG 0.593657 6_3:+1796092 None:intergenic
ATACCTTGTTGTGTAGACCC+CGG 0.606322 6_3:+1792826 None:intergenic
GGTCACCGGTACGAAAGAGA+AGG 0.606869 6_3:+1791226 None:intergenic
AGGAGAAACCAACTTGAGAA+GGG 0.608125 6_3:-1793338 Msa0933300:CDS
GGCACAAACAAAATCTCAGA+TGG 0.613066 6_3:-1793712 Msa0933300:CDS
AATATGAGGATGAGTTGGCA+AGG 0.615642 6_3:-1793686 Msa0933300:CDS
AACCGATTCATCTTCGAAAG+CGG 0.617854 6_3:-1795945 Msa0933300:CDS
CACGGAACAAGCTTGCGTCA+AGG 0.619585 6_3:+1790860 None:intergenic
CAGCCGGGGTCTACACAACA+AGG 0.619731 6_3:-1792829 Msa0933300:intron
GAAGCCGCAGCTAAAACCGA+TGG 0.622294 6_3:-1790955 Msa0933300:CDS
TATGTCTTTAGATTGGTCAC+CGG 0.628772 6_3:+1791212 None:intergenic
AAGCGGGTAACGATAATCCA+AGG 0.630177 6_3:-1795928 Msa0933300:CDS
GTCACCGGTACGAAAGAGAA+GGG 0.632116 6_3:+1791227 None:intergenic
ATCGGAGAAAGAGACGGTGG+CGG 0.632706 6_3:+1795994 None:intergenic
TTTATGGCCCTCCAGGAACA+GGG 0.634037 6_3:-1792307 Msa0933300:CDS
ACAGCTGAATCAAGGTCACC+AGG 0.637144 6_3:+1791165 None:intergenic
AAGGGAAATAGCGAAACTGA+TGG 0.642775 6_3:-1790923 Msa0933300:CDS
CCTAGAATTTCCCTTGCCTG+GGG 0.646412 6_3:-1791121 Msa0933300:CDS
GTTACAGCCTGTGATCCGAG+TGG 0.647718 6_3:+1791590 None:intergenic
CTGAATCAAGGTCACCAGGA+CGG 0.653067 6_3:+1791169 None:intergenic
GGCGCCATCGGAGAAAGAGA+CGG 0.665134 6_3:+1795988 None:intergenic
TGTAGCAGACCGTATTGATG+AGG 0.665500 6_3:-1791145 Msa0933300:CDS
TGGGCCAAGAAGTCCAATAG+GGG 0.667815 6_3:-1791545 Msa0933300:CDS
GATTATGCATTGATGACTGG+AGG 0.668224 6_3:-1791623 Msa0933300:CDS
TCCAGGAACAGGGAAGACAA+TGG 0.668408 6_3:-1792297 Msa0933300:CDS
CCAGGGGTATTTCCCTCTGG+AGG 0.673340 6_3:+1792514 None:intergenic
TGATCCGAGAGTCCTCCAGA+GGG 0.678628 6_3:-1792526 Msa0933300:CDS
TTGATCCGAGAGTCCTCCAG+AGG 0.688066 6_3:-1792527 Msa0933300:CDS
GAGAAAACGTGCCAGACCAG+GGG 0.697208 6_3:+1792498 None:intergenic
TAAAGCTTAGTTAGTGCACG+AGG 0.699195 6_3:-1790779 Msa0933300:exon
GCCATCGGAGAAAGAGACGG+TGG 0.704426 6_3:+1795991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATATATATATTTT+CGG - chr6_3:1792089-1792108 Msa0933300:intron 0.0%
!! ATTATATATTAAATATAAAA+TGG - chr6_3:1794806-1794825 Msa0933300:intron 0.0%
!!! TATGTTTAATATTTTATTTG+TGG - chr6_3:1790908-1790927 Msa0933300:CDS 10.0%
!!! GTTATTACTTTTTTTTTAAT+TGG - chr6_3:1791635-1791654 Msa0933300:intron 10.0%
!! TACAATAATAAAAATTTGAT+AGG + chr6_3:1792540-1792559 None:intergenic 10.0%
!!! GTTTTTGTTTTTTTTTTTGA+AGG - chr6_3:1790936-1790955 Msa0933300:CDS 15.0%
!! TAATAACATGCAAATTTATT+TGG + chr6_3:1791622-1791641 None:intergenic 15.0%
!! ATTAAACTAATAGAACATTA+TGG + chr6_3:1792638-1792657 None:intergenic 15.0%
!!! AACATGAAACATATTTTTTT+TGG + chr6_3:1794411-1794430 None:intergenic 15.0%
!! TATAAAAAATCTGAAAAATG+AGG + chr6_3:1794542-1794561 None:intergenic 15.0%
!!! AAAATATCATTTTATCTAGA+AGG + chr6_3:1794919-1794938 None:intergenic 15.0%
!!! TTTGTTTTCAATTTAAATTC+AGG - chr6_3:1794948-1794967 Msa0933300:intron 15.0%
!!! TTGTTTTCAATTTAAATTCA+GGG - chr6_3:1794949-1794968 Msa0933300:intron 15.0%
!! ATAATAATATATGAAAAGCA+TGG + chr6_3:1795143-1795162 None:intergenic 15.0%
!! ATTCATTATTATACACATGT+TGG - chr6_3:1791688-1791707 Msa0933300:intron 20.0%
!! TTCATTATTATACACATGTT+GGG - chr6_3:1791689-1791708 Msa0933300:intron 20.0%
!!! CTATTTTCTCAAATTATCAA+AGG + chr6_3:1791883-1791902 None:intergenic 20.0%
!!! TATATTTTCAGACAATGAAA+TGG + chr6_3:1792008-1792027 None:intergenic 20.0%
!!! ATTAAACCTTTTGAAACTTT+GGG - chr6_3:1792955-1792974 Msa0933300:intron 20.0%
!! TAAAAAATTTACCTCCAATA+TGG + chr6_3:1793335-1793354 None:intergenic 20.0%
!!! ATAATTGAGTTTTCAGATTT+GGG + chr6_3:1793672-1793691 None:intergenic 20.0%
!! TATAAATTGTCCATAAAGTT+TGG - chr6_3:1793793-1793812 Msa0933300:intron 20.0%
!!! TTGTATATTCTCTAAAAATG+GGG + chr6_3:1793883-1793902 None:intergenic 20.0%
!!! GTTGTATATTCTCTAAAAAT+GGG + chr6_3:1793884-1793903 None:intergenic 20.0%
!!! AGTTGTATATTCTCTAAAAA+TGG + chr6_3:1793885-1793904 None:intergenic 20.0%
!! AATTAGAACAAGAAGATAAA+TGG + chr6_3:1794372-1794391 None:intergenic 20.0%
!! ATATTCCTCTTTATAATTTC+TGG - chr6_3:1794561-1794580 Msa0933300:intron 20.0%
!!! TCTAAAATCATCTTTCTTAA+AGG - chr6_3:1794621-1794640 Msa0933300:intron 20.0%
!! ATTGAATTTAGAAAGACAAT+TGG + chr6_3:1794664-1794683 None:intergenic 20.0%
!!! GCATCTTTTTTTTTTTTGAA+TGG - chr6_3:1794774-1794793 Msa0933300:intron 20.0%
!! AAAAAAATGATGAGCAAATA+AGG + chr6_3:1794882-1794901 None:intergenic 20.0%
!! TCATATATTATTATCCAAGT+CGG - chr6_3:1795149-1795168 Msa0933300:intron 20.0%
!! TTATAGTGAAATCTTATTGA+AGG - chr6_3:1795956-1795975 Msa0933300:CDS 20.0%
!! TCTGACAACTTTCTTTTTAT+TGG - chr6_3:1791218-1791237 Msa0933300:CDS 25.0%
!!! ACAATTTTACAGCCATTTTT+CGG + chr6_3:1791310-1791329 None:intergenic 25.0%
!! TATCATCTGAGTTCTAATTA+CGG + chr6_3:1791496-1791515 None:intergenic 25.0%
! TGATTAAATGTAACATCTGT+TGG - chr6_3:1791906-1791925 Msa0933300:intron 25.0%
!! TATTTTCGGTATTAGATAGA+TGG - chr6_3:1792103-1792122 Msa0933300:intron 25.0%
! AATAGTTCATCATGAATGAA+TGG - chr6_3:1792142-1792161 Msa0933300:intron 25.0%
!! TCGTTTGAATTTTATCCAAT+TGG - chr6_3:1792226-1792245 Msa0933300:intron 25.0%
!! CGTTTGAATTTTATCCAATT+GGG - chr6_3:1792227-1792246 Msa0933300:intron 25.0%
!! GTTTGAATTTTATCCAATTG+GGG - chr6_3:1792228-1792247 Msa0933300:intron 25.0%
! AAAGTCAGAGTTTGAAAATA+CGG + chr6_3:1792340-1792359 None:intergenic 25.0%
! ATCAATTACTAACAACTTCA+AGG - chr6_3:1792428-1792447 Msa0933300:CDS 25.0%
! AACAATAATGACAATGTTTC+AGG - chr6_3:1792494-1792513 Msa0933300:CDS 25.0%
! ACAATAATGACAATGTTTCA+GGG - chr6_3:1792495-1792514 Msa0933300:CDS 25.0%
! TAAAAATTTGATAGGCAGTA+TGG + chr6_3:1792532-1792551 None:intergenic 25.0%
!! TTTTATTGCAAGTACAAGTT+TGG - chr6_3:1792709-1792728 Msa0933300:intron 25.0%
! CACATATCTTCAATTGTTTA+AGG + chr6_3:1792735-1792754 None:intergenic 25.0%
!!! TATTTTGTGTTTTGGTTTTC+CGG - chr6_3:1792790-1792809 Msa0933300:intron 25.0%
!!! CATTAAACCTTTTGAAACTT+TGG - chr6_3:1792954-1792973 Msa0933300:intron 25.0%
!! ATTCTCACATTTTTATTGTC+AGG - chr6_3:1793011-1793030 Msa0933300:intron 25.0%
! CATAATATATAGTTCGTATC+TGG + chr6_3:1793358-1793377 None:intergenic 25.0%
!! GTGAAGCATTATATCTTAAT+TGG - chr6_3:1793589-1793608 Msa0933300:intron 25.0%
!!! ACTCAATCAATATTTTTGCT+TGG - chr6_3:1793619-1793638 Msa0933300:intron 25.0%
!! TAATTGAGTTTTCAGATTTG+GGG + chr6_3:1793671-1793690 None:intergenic 25.0%
!! GATAATTGAGTTTTCAGATT+TGG + chr6_3:1793673-1793692 None:intergenic 25.0%
!! AAAACTCAATTATCTTTTGC+AGG - chr6_3:1793679-1793698 Msa0933300:CDS 25.0%
!! AAACTCAATTATCTTTTGCA+GGG - chr6_3:1793680-1793699 Msa0933300:CDS 25.0%
! GAAATAGTCTGATAAATAGA+GGG + chr6_3:1793919-1793938 None:intergenic 25.0%
! AGAAATAGTCTGATAAATAG+AGG + chr6_3:1793920-1793939 None:intergenic 25.0%
!! GGATATGTTGATAGAATATT+GGG - chr6_3:1794039-1794058 Msa0933300:intron 25.0%
!! ATCTGTTTCAAATAATGGAA+AGG - chr6_3:1794161-1794180 Msa0933300:intron 25.0%
!! TCTGTTTCAAATAATGGAAA+GGG - chr6_3:1794162-1794181 Msa0933300:intron 25.0%
! TGAAAACACAAAATTACATC+AGG - chr6_3:1794248-1794267 Msa0933300:intron 25.0%
! TGATCACTTCTACTTAATAT+AGG + chr6_3:1794499-1794518 None:intergenic 25.0%
! TTCAATTTAAATTCAGGGAT+TGG - chr6_3:1794954-1794973 Msa0933300:intron 25.0%
!! AATATATGAAAAGCATGGAA+TGG + chr6_3:1795138-1795157 None:intergenic 25.0%
! AAAAGTAATGAAATTGCATC+AGG + chr6_3:1795207-1795226 None:intergenic 25.0%
!! CTTTAATCTCTATCTTTTGT+GGG + chr6_3:1795601-1795620 None:intergenic 25.0%
! GCATCAACAAAGAATAAAAT+TGG - chr6_3:1795787-1795806 Msa0933300:intron 25.0%
! TCATGAATTATCATGGTTAA+GGG + chr6_3:1796071-1796090 None:intergenic 25.0%
! TTCATGAATTATCATGGTTA+AGG + chr6_3:1796072-1796091 None:intergenic 25.0%
TGCTTCATCATATGCTAAAA+AGG - chr6_3:1790759-1790778 Msa0933300:intron 30.0%
TGAGATATTGAAGAAACAAG+AGG - chr6_3:1790963-1790982 Msa0933300:CDS 30.0%
! TAATCGAATGAAAGCACAAT+TGG - chr6_3:1791026-1791045 Msa0933300:CDS 30.0%
ACTGACAACATAAGAATTTC+TGG + chr6_3:1791068-1791087 None:intergenic 30.0%
! AGCATTTTTGTATGCGAAAT+AGG - chr6_3:1791152-1791171 Msa0933300:CDS 30.0%
AAGTAGTAATCGCATGTTAT+CGG - chr6_3:1791468-1791487 Msa0933300:intron 30.0%
! ATCATCTGAGTTCTAATTAC+GGG + chr6_3:1791495-1791514 None:intergenic 30.0%
ACTCAGATGATAAAAGATTG+CGG - chr6_3:1791504-1791523 Msa0933300:CDS 30.0%
GGAGACATTTAATATGATCA+GGG - chr6_3:1791525-1791544 Msa0933300:CDS 30.0%
GAGACATTTAATATGATCAG+GGG - chr6_3:1791526-1791545 Msa0933300:CDS 30.0%
!!! TATGTAGTTTTGTAGCTTGA+AGG - chr6_3:1791790-1791809 Msa0933300:intron 30.0%
CATTCATGATGAACTATTCA+AGG + chr6_3:1792140-1792159 None:intergenic 30.0%
TTTACATGAGTCTGTATCAT+GGG - chr6_3:1792176-1792195 Msa0933300:intron 30.0%
GACAGTAATGTCCTAATTAT+GGG + chr6_3:1792270-1792289 None:intergenic 30.0%
AGACAGTAATGTCCTAATTA+TGG + chr6_3:1792271-1792290 None:intergenic 30.0%
TAATTAGGACATTACTGTCT+AGG - chr6_3:1792271-1792290 Msa0933300:CDS 30.0%
CAATAATGACAATGTTTCAG+GGG - chr6_3:1792496-1792515 Msa0933300:CDS 30.0%
! TCTGTGTGTATTTTGTGTTT+TGG - chr6_3:1792782-1792801 Msa0933300:intron 30.0%
AAGAAAACCAATTGATAAGC+CGG + chr6_3:1792812-1792831 None:intergenic 30.0%
ATATGACGAAGAAAAAAAGC+TGG - chr6_3:1792854-1792873 Msa0933300:CDS 30.0%
CAAAAACCCAAAGTTTCAAA+AGG + chr6_3:1792964-1792983 None:intergenic 30.0%
AAAATGAGTACCATAGAGTA+AGG - chr6_3:1793037-1793056 Msa0933300:intron 30.0%
GTGATTTAGATCGAGAAAAA+TGG - chr6_3:1793283-1793302 Msa0933300:CDS 30.0%
AATACTACCTTTGACCATAT+TGG - chr6_3:1793318-1793337 Msa0933300:CDS 30.0%
!! CATCGTGAATTCGTTTTTAA+AGG + chr6_3:1793440-1793459 None:intergenic 30.0%
! TCAGCATAATTGTAGTTTGT+TGG - chr6_3:1793518-1793537 Msa0933300:CDS 30.0%
!! AATCAATATTTTTGCTTGGC+TGG - chr6_3:1793623-1793642 Msa0933300:intron 30.0%
!! ATCAATATTTTTGCTTGGCT+GGG - chr6_3:1793624-1793643 Msa0933300:intron 30.0%
! AACTCAATTATCTTTTGCAG+GGG - chr6_3:1793681-1793700 Msa0933300:CDS 30.0%
CTTATTACGATCTGTTAGAA+TGG + chr6_3:1793716-1793735 None:intergenic 30.0%
TCTAACAGATCGTAATAAGT+TGG - chr6_3:1793717-1793736 Msa0933300:CDS 30.0%
ATTCAGATTGTACCTAATGT+AGG - chr6_3:1793995-1794014 Msa0933300:intron 30.0%
TTCAGATTGTACCTAATGTA+GGG - chr6_3:1793996-1794015 Msa0933300:intron 30.0%
! GGGATATGTTGATAGAATAT+TGG - chr6_3:1794038-1794057 Msa0933300:intron 30.0%
! CCATTATTTGAAACAGATTC+TGG + chr6_3:1794159-1794178 None:intergenic 30.0%
CCAGAATCTGTTTCAAATAA+TGG - chr6_3:1794156-1794175 Msa0933300:intron 30.0%
!! TCAAATAATGGAAAGGGTTT+TGG - chr6_3:1794168-1794187 Msa0933300:intron 30.0%
TCAATTCTCTTACTAAGAGA+AGG + chr6_3:1794210-1794229 None:intergenic 30.0%
! TAAAAAAGCACGTTTCTGAA+TGG + chr6_3:1794276-1794295 None:intergenic 30.0%
!!! TTCAGAAACGTGCTTTTTTA+TGG - chr6_3:1794276-1794295 Msa0933300:intron 30.0%
! AATGCAAAGTTCTTTTTCTG+TGG - chr6_3:1794681-1794700 Msa0933300:intron 30.0%
!! TGCAACTTTTACTCACTTTT+TGG + chr6_3:1795246-1795265 None:intergenic 30.0%
TGAGAATTGTCTGAGTAAAT+TGG - chr6_3:1795289-1795308 Msa0933300:intron 30.0%
GAGAATTGTCTGAGTAAATT+GGG - chr6_3:1795290-1795309 Msa0933300:intron 30.0%
! CCTTTAATCTCTATCTTTTG+TGG + chr6_3:1795602-1795621 None:intergenic 30.0%
CCACAAAAGATAGAGATTAA+AGG - chr6_3:1795599-1795618 Msa0933300:CDS 30.0%
ATTGAGCGATGATATCATAA+AGG - chr6_3:1795622-1795641 Msa0933300:CDS 30.0%
CCTTATAATCTACAACTTCA+CGG + chr6_3:1795760-1795779 None:intergenic 30.0%
TCATGTGTTACATATAGTCA+TGG + chr6_3:1796007-1796026 None:intergenic 30.0%
CTATATGTAACACATGATTC+AGG - chr6_3:1796010-1796029 Msa0933300:CDS 30.0%
CCATGATAATTCATGAACTA+CGG - chr6_3:1796075-1796094 Msa0933300:five_prime_UTR 30.0%
TGAGAATAAACCGGATAAAG+TGG + chr6_3:1790566-1790585 None:intergenic 35.0%
!!! GCTTTAAGACCTTTTTCAAG+AGG + chr6_3:1790724-1790743 None:intergenic 35.0%
AGTTACTCAGATTATAACCG+AGG + chr6_3:1790817-1790836 None:intergenic 35.0%
TGAAGAAACAAGAGGAAACA+AGG - chr6_3:1790971-1790990 Msa0933300:CDS 35.0%
AGAGACAGTTATCCGAAAAA+TGG - chr6_3:1791295-1791314 Msa0933300:intron 35.0%
CATAAGTAGAACTCAAGAGA+TGG - chr6_3:1791343-1791362 Msa0933300:intron 35.0%
TGTAGAGACAATTGATATGC+TGG - chr6_3:1791374-1791393 Msa0933300:intron 35.0%
GTAGAGACAATTGATATGCT+GGG - chr6_3:1791375-1791394 Msa0933300:intron 35.0%
CGGAGACATTTAATATGATC+AGG - chr6_3:1791524-1791543 Msa0933300:CDS 35.0%
TTTGAGTGTCCAAAACATGT+CGG + chr6_3:1791829-1791848 None:intergenic 35.0%
! TCAAAGGTGTATGCATTTCT+GGG + chr6_3:1791867-1791886 None:intergenic 35.0%
! ATCAAAGGTGTATGCATTTC+TGG + chr6_3:1791868-1791887 None:intergenic 35.0%
CTTTACATGAGTCTGTATCA+TGG - chr6_3:1792175-1792194 Msa0933300:intron 35.0%
TTACATGAGTCTGTATCATG+GGG - chr6_3:1792177-1792196 Msa0933300:intron 35.0%
GTGTTTCATCTCCCATAATT+AGG - chr6_3:1792256-1792275 Msa0933300:intron 35.0%
TCAGAGTTTGAAAATACGGT+CGG + chr6_3:1792336-1792355 None:intergenic 35.0%
ATTTGATAGGCAGTATGGAA+AGG + chr6_3:1792527-1792546 None:intergenic 35.0%
ATTATGGCGTAATTTGATCC+AGG + chr6_3:1792622-1792641 None:intergenic 35.0%
ACACAAAATACACACAGAAC+AGG + chr6_3:1792780-1792799 None:intergenic 35.0%
!!! GGCTTATCAATTGGTTTTCT+TGG - chr6_3:1792811-1792830 Msa0933300:intron 35.0%
!!! TATCAATTGGTTTTCTTGGC+AGG - chr6_3:1792815-1792834 Msa0933300:intron 35.0%
TTTCTTGGCAGGAAAAACAA+AGG - chr6_3:1792826-1792845 Msa0933300:intron 35.0%
!! TTTTGTTTGTGCCTGATGTT+GGG + chr6_3:1792880-1792899 None:intergenic 35.0%
!! ATTTTGTTTGTGCCTGATGT+TGG + chr6_3:1792881-1792900 None:intergenic 35.0%
ATCTCAGATGGCTAAATATG+AGG - chr6_3:1792899-1792918 Msa0933300:CDS 35.0%
! CTTGCAATTTTACAAGCTCT+TGG + chr6_3:1793065-1793084 None:intergenic 35.0%
AGAAGATTCATCAATCAGAC+TGG - chr6_3:1793083-1793102 Msa0933300:intron 35.0%
ACTACGAAAGCAAACTATAG+AGG - chr6_3:1793143-1793162 Msa0933300:intron 35.0%
AAAGCAAACTATAGAGGAGA+AGG - chr6_3:1793149-1793168 Msa0933300:intron 35.0%
TTTACCTCCAATATGGTCAA+AGG + chr6_3:1793328-1793347 None:intergenic 35.0%
! CGAATTCACGATGATTTTTG+TGG - chr6_3:1793447-1793466 Msa0933300:CDS 35.0%
! ACTCAATTATCTTTTGCAGG+GGG - chr6_3:1793682-1793701 Msa0933300:CDS 35.0%
!! AATAAGTTGGTCGTAACAGT+TGG - chr6_3:1793730-1793749 Msa0933300:CDS 35.0%
GTAGCTCATTCCAAACTTTA+TGG + chr6_3:1793806-1793825 None:intergenic 35.0%
TTTGACACGTTGACAAAACA+AGG + chr6_3:1794439-1794458 None:intergenic 35.0%
TGTCAACGTGTCAAATAAGT+AGG - chr6_3:1794444-1794463 Msa0933300:intron 35.0%
GTCAACGTGTCAAATAAGTA+GGG - chr6_3:1794445-1794464 Msa0933300:intron 35.0%
GTGTCAAATAAGTAGGGAAT+TGG - chr6_3:1794451-1794470 Msa0933300:intron 35.0%
GTCAGCCAGAAATTATAAAG+AGG + chr6_3:1794569-1794588 None:intergenic 35.0%
! TGCAGTTATTAGCTTACAAG+TGG - chr6_3:1794709-1794728 Msa0933300:intron 35.0%
! GCAGTTATTAGCTTACAAGT+GGG - chr6_3:1794710-1794729 Msa0933300:intron 35.0%
TTCAAGGAGATTTCTCTTGT+AGG + chr6_3:1794840-1794859 None:intergenic 35.0%
AATGTTCAGGATACACTTCA+AGG + chr6_3:1794856-1794875 None:intergenic 35.0%
GCAAATAAGGTCAAATGTTC+AGG + chr6_3:1794869-1794888 None:intergenic 35.0%
! TTGGATTATGCATTGATGAC+TGG - chr6_3:1794973-1794992 Msa0933300:intron 35.0%
AGATACACGAGTTGTTTGAT+TGG - chr6_3:1795034-1795053 Msa0933300:intron 35.0%
GATACACGAGTTGTTTGATT+GGG - chr6_3:1795035-1795054 Msa0933300:intron 35.0%
AAAAAGCAGTAAACCCCTAT+TGG + chr6_3:1795070-1795089 None:intergenic 35.0%
! GTAAATTGGGTGAATTTTGC+AGG - chr6_3:1795303-1795322 Msa0933300:intron 35.0%
! TATGTCTTTAGATTGGTCAC+CGG + chr6_3:1795390-1795409 None:intergenic 35.0%
CAAGGACTATGTCTTTAGAT+TGG + chr6_3:1795397-1795416 None:intergenic 35.0%
!! ATTCTAGGACCTCATCAATA+CGG + chr6_3:1795466-1795485 None:intergenic 35.0%
CCGTGAAGTTGTAGATTATA+AGG - chr6_3:1795757-1795776 Msa0933300:intron 35.0%
TGTCAGCAATCTTCTAATGT+AGG - chr6_3:1795865-1795884 Msa0933300:CDS 35.0%
GTCAGCAATCTTCTAATGTA+GGG - chr6_3:1795866-1795885 Msa0933300:CDS 35.0%
! GATAAAAGCATGCTCAGAAT+AGG + chr6_3:1795896-1795915 None:intergenic 35.0%
ATTGTTTGTCCCTGATTGAT+GGG - chr6_3:1795916-1795935 Msa0933300:CDS 35.0%
CAAAATCTTCCCATCAATCA+GGG + chr6_3:1795928-1795947 None:intergenic 35.0%
CCGTAGTTCATGAATTATCA+TGG + chr6_3:1796078-1796097 None:intergenic 35.0%
! TGGTGAAGAAAAGGTTCTGA+GGG + chr6_3:1790509-1790528 None:intergenic 40.0%
ATGGTGAAGAAAAGGTTCTG+AGG + chr6_3:1790510-1790529 None:intergenic 40.0%
GGTGAAGAATGGTGAAGAAA+AGG + chr6_3:1790518-1790537 None:intergenic 40.0%
!! GAAGAGGTTTTGGTGAAGAA+TGG + chr6_3:1790529-1790548 None:intergenic 40.0%
CACCAAAACCTCTTCTTCAA+TGG - chr6_3:1790534-1790553 Msa0933300:three_prime_UTR 40.0%
ATGGCGAAAACCACTTTATC+CGG - chr6_3:1790553-1790572 Msa0933300:three_prime_UTR 40.0%
GGTTAAGGCTGAGAATAAAC+CGG + chr6_3:1790575-1790594 None:intergenic 40.0%
TGCTGAAGATGAAGAAGGAA+TGG + chr6_3:1790635-1790654 None:intergenic 40.0%
! AACCGATTCATCTTCGAAAG+CGG - chr6_3:1790654-1790673 Msa0933300:three_prime_UTR 40.0%
GATCCTGTACCTCTTGAAAA+AGG - chr6_3:1790712-1790731 Msa0933300:intron 40.0%
!!! AGACCTTTTTCAAGAGGTAC+AGG + chr6_3:1790718-1790737 None:intergenic 40.0%
!! TGCTAAAAAGGTACTGACAC+CGG - chr6_3:1790771-1790790 Msa0933300:intron 40.0%
CGTAAGTAGAGCTCAAATTG+CGG - chr6_3:1791090-1791109 Msa0933300:CDS 40.0%
TTAGTAGTGTGCGTGAGTTT+CGG - chr6_3:1791572-1791591 Msa0933300:CDS 40.0%
CAGAGAAGATAGAGTTTGAG+AGG - chr6_3:1791762-1791781 Msa0933300:intron 40.0%
TTGTAGCTTGAAGGTTTGTG+TGG - chr6_3:1791799-1791818 Msa0933300:intron 40.0%
TGTAGCTTGAAGGTTTGTGT+GGG - chr6_3:1791800-1791819 Msa0933300:intron 40.0%
! CTTCATATTGAAGGTGTGTC+TGG + chr6_3:1791958-1791977 None:intergenic 40.0%
! GCATTGGCACTTCATATTGA+AGG + chr6_3:1791967-1791986 None:intergenic 40.0%
TGAAACACATACACCCCAAT+TGG + chr6_3:1792244-1792263 None:intergenic 40.0%
CAGAGTTTGAAAATACGGTC+GGG + chr6_3:1792335-1792354 None:intergenic 40.0%
TCCTTAATTCCTTCAAACCC+TGG - chr6_3:1792364-1792383 Msa0933300:CDS 40.0%
TCCAGGGTTTGAAGGAATTA+AGG + chr6_3:1792368-1792387 None:intergenic 40.0%
! TATGAAGCACTTACAGTCCA+GGG + chr6_3:1792384-1792403 None:intergenic 40.0%
! AACAACTTCAAGGTACTCGT+AGG - chr6_3:1792438-1792457 Msa0933300:CDS 40.0%
AACAGAAGACTAACTCTAGC+TGG - chr6_3:1792461-1792480 Msa0933300:CDS 40.0%
! TGGTTTTCCGGCTTATCAAT+TGG - chr6_3:1792802-1792821 Msa0933300:intron 40.0%
GGCACAAACAAAATCTCAGA+TGG - chr6_3:1792887-1792906 Msa0933300:CDS 40.0%
GGCTAAATATGAGGATGAGT+TGG - chr6_3:1792908-1792927 Msa0933300:intron 40.0%
! AATATGAGGATGAGTTGGCA+AGG - chr6_3:1792913-1792932 Msa0933300:intron 40.0%
ACAGCACTTGCAAAAGCAAA+AGG - chr6_3:1793201-1793220 Msa0933300:intron 40.0%
CAGCACTTGCAAAAGCAAAA+GGG - chr6_3:1793202-1793221 Msa0933300:intron 40.0%
CGAAAAACGAAGAGATTGAC+AGG - chr6_3:1793241-1793260 Msa0933300:intron 40.0%
AGGAGAAACCAACTTGAGAA+GGG - chr6_3:1793261-1793280 Msa0933300:intron 40.0%
CTAAATCACCCTTCTCAAGT+TGG + chr6_3:1793272-1793291 None:intergenic 40.0%
ACTACCTTTGACCATATTGG+AGG - chr6_3:1793321-1793340 Msa0933300:CDS 40.0%
! GAGTTTTCAGATTTGGGGAT+TGG + chr6_3:1793666-1793685 None:intergenic 40.0%
GGAATGAGCTACTATAAACG+AGG - chr6_3:1793814-1793833 Msa0933300:intron 40.0%
TGAGCTACTATAAACGAGGA+AGG - chr6_3:1793818-1793837 Msa0933300:intron 40.0%
CTACTATAAACGAGGAAGGA+GGG - chr6_3:1793822-1793841 Msa0933300:intron 40.0%
!!! GGTCGAGTGTTATTTTTGCA+TGG - chr6_3:1793853-1793872 Msa0933300:intron 40.0%
GATTGTACCTAATGTAGGGA+AGG - chr6_3:1794000-1794019 Msa0933300:intron 40.0%
TGGTTTAGCAAGTCGAGAAA+GGG + chr6_3:1794139-1794158 None:intergenic 40.0%
TAGTAAGAGAATTGAGCAGC+TGG - chr6_3:1794215-1794234 Msa0933300:intron 40.0%
! CAGAGAGTTGGCTTACAAAT+CGG - chr6_3:1794329-1794348 Msa0933300:intron 40.0%
!! AATTTCTGGCTGACAGTCTA+AGG - chr6_3:1794575-1794594 Msa0933300:intron 40.0%
AACAGCAATAACCAGAAGCA+TGG + chr6_3:1794745-1794764 None:intergenic 40.0%
! GATTATGCATTGATGACTGG+AGG - chr6_3:1794976-1794995 Msa0933300:intron 40.0%
TAAACCCCTATTGGACTTCT+TGG + chr6_3:1795061-1795080 None:intergenic 40.0%
! ATTATCCAAGTCGGTTCTTG+TGG - chr6_3:1795158-1795177 Msa0933300:intron 40.0%
! AATTGGGTGAATTTTGCAGG+CGG - chr6_3:1795306-1795325 Msa0933300:intron 40.0%
CTTGAGCTATGTACTTGTCT+AGG + chr6_3:1795535-1795554 None:intergenic 40.0%
CAAGCTGGATCAAGAAAATC+TGG - chr6_3:1795551-1795570 Msa0933300:intron 40.0%
!!! AAATCCATCGGTTTTAGCTG+CGG + chr6_3:1795651-1795670 None:intergenic 40.0%
!! GCTAAAACCGATGGATTTTC+CGG - chr6_3:1795653-1795672 Msa0933300:intron 40.0%
AAGGGAAATAGCGAAACTGA+TGG - chr6_3:1795676-1795695 Msa0933300:intron 40.0%
TAAAGCTTAGTTAGTGCACG+AGG - chr6_3:1795820-1795839 Msa0933300:intron 40.0%
CATTGTTTGTCCCTGATTGA+TGG - chr6_3:1795915-1795934 Msa0933300:CDS 40.0%
CCAAAATCTTCCCATCAATC+AGG + chr6_3:1795929-1795948 None:intergenic 40.0%
! CCTGATTGATGGGAAGATTT+TGG - chr6_3:1795926-1795945 Msa0933300:CDS 40.0%
TTCATGAACTACGGTGATTG+AGG - chr6_3:1796084-1796103 Msa0933300:five_prime_UTR 40.0%
! CGCCATTGAAGAAGAGGTTT+TGG + chr6_3:1790539-1790558 None:intergenic 45.0%
! GGTTTTCGCCATTGAAGAAG+AGG + chr6_3:1790545-1790564 None:intergenic 45.0%
TCGGTTGCTGAAGATGAAGA+AGG + chr6_3:1790640-1790659 None:intergenic 45.0%
! ACCGATTCATCTTCGAAAGC+GGG - chr6_3:1790655-1790674 Msa0933300:three_prime_UTR 45.0%
ACCCGCTTTCGAAGATGAAT+CGG + chr6_3:1790659-1790678 None:intergenic 45.0%
AAGCGGGTAACGATAATCCA+AGG - chr6_3:1790671-1790690 Msa0933300:intron 45.0%
!! AATCCAAGGAGTGCTTCTTC+TGG - chr6_3:1790685-1790704 Msa0933300:intron 45.0%
!! AATCCAGAAGAAGCACTCCT+TGG + chr6_3:1790691-1790710 None:intergenic 45.0%
AGACATGTCAGTGTTGTGTC+CGG + chr6_3:1790793-1790812 None:intergenic 45.0%
GGAAACAAGGCAAGCTGAAT+TGG - chr6_3:1790984-1791003 Msa0933300:CDS 45.0%
CGGAGACATTTGATATGTCG+AGG - chr6_3:1791110-1791129 Msa0933300:CDS 45.0%
! AGGTGTATGCATTTCTGGGT+CGG + chr6_3:1791863-1791882 None:intergenic 45.0%
TGTCAGATGCAATGTGGCAT+TGG + chr6_3:1791983-1792002 None:intergenic 45.0%
! ATGGAGTGTCAGATGCAATG+TGG + chr6_3:1791989-1792008 None:intergenic 45.0%
TTTCCTCAGCGTGTTGAAGA+CGG - chr6_3:1792046-1792065 Msa0933300:intron 45.0%
ACTTACAGTCCAGGGTTTGA+AGG + chr6_3:1792376-1792395 None:intergenic 45.0%
! CTATGAAGCACTTACAGTCC+AGG + chr6_3:1792385-1792404 None:intergenic 45.0%
CTGGACTGTAAGTGCTTCAT+AGG - chr6_3:1792383-1792402 Msa0933300:CDS 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr6_3:1792588-1792607 Msa0933300:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr6_3:1792589-1792608 Msa0933300:intron 45.0%
ACACAGAACAGGAGCAAAGA+AGG + chr6_3:1792769-1792788 None:intergenic 45.0%
AAAAAAGCTGGCCCAACATC+AGG - chr6_3:1792866-1792885 Msa0933300:CDS 45.0%
GCTCTTGGTTCCTTACTCTA+TGG + chr6_3:1793050-1793069 None:intergenic 45.0%
CAGGAGAAACCAACTTGAGA+AGG - chr6_3:1793260-1793279 Msa0933300:intron 45.0%
! TTCAGATTTGGGGATTGGTG+TGG + chr6_3:1793661-1793680 None:intergenic 45.0%
! AAGTTGGTCGTAACAGTTGG+TGG - chr6_3:1793733-1793752 Msa0933300:CDS 45.0%
! ATACCTTGTTGTGTAGACCC+CGG + chr6_3:1793776-1793795 None:intergenic 45.0%
GCTACTATAAACGAGGAAGG+AGG - chr6_3:1793821-1793840 Msa0933300:intron 45.0%
CGAGGAAGGAGGGAAAAAAT+TGG - chr6_3:1793832-1793851 Msa0933300:intron 45.0%
!!! AAGTCGAGAAAGGGTGCTTT+TGG + chr6_3:1794130-1794149 None:intergenic 45.0%
CTGGTTTAGCAAGTCGAGAA+AGG + chr6_3:1794140-1794159 None:intergenic 45.0%
CGATTTGTAAGCCAACTCTC+TGG + chr6_3:1794331-1794350 None:intergenic 45.0%
GGTATTCAGTACCATGCTTC+TGG - chr6_3:1794731-1794750 Msa0933300:intron 45.0%
ATTGGGCCAAGAAGTCCAAT+AGG - chr6_3:1795052-1795071 Msa0933300:intron 45.0%
TTGGGCCAAGAAGTCCAATA+GGG - chr6_3:1795053-1795072 Msa0933300:intron 45.0%
AATGCCCTTCTCTTTCGTAC+CGG - chr6_3:1795368-1795387 Msa0933300:intron 45.0%
! TGTAGCAGACCGTATTGATG+AGG - chr6_3:1795454-1795473 Msa0933300:intron 45.0%
TCCTAGAATTTCCCTTGCCT+GGG - chr6_3:1795477-1795496 Msa0933300:intron 45.0%
GACAAGTACATAGCTCAAGC+TGG - chr6_3:1795536-1795555 Msa0933300:intron 45.0%
!! AAACCGATGGATTTTCCGGA+AGG - chr6_3:1795657-1795676 Msa0933300:intron 45.0%
!! AACCGATGGATTTTCCGGAA+GGG - chr6_3:1795658-1795677 Msa0933300:intron 45.0%
TTCCCTTCCGGAAAATCCAT+CGG + chr6_3:1795663-1795682 None:intergenic 45.0%
! CAGTTTCGCTATTTCCCTTC+CGG + chr6_3:1795675-1795694 None:intergenic 45.0%
! ACAGTTGTCGCTTCCATACA+CGG + chr6_3:1795717-1795736 None:intergenic 45.0%
TGAAGAAGGAATGGCGCCAT+CGG + chr6_3:1790626-1790645 None:intergenic 50.0%
CAACACTGACATGTCTGCCT+CGG - chr6_3:1790797-1790816 Msa0933300:CDS 50.0%
GCAAGCTGAATTGGCTGCTA+AGG - chr6_3:1790993-1791012 Msa0933300:CDS 50.0%
! TGTGGGTGTCCGACATGTTT+TGG - chr6_3:1791817-1791836 Msa0933300:intron 50.0%
! GGTGTATGCATTTCTGGGTC+GGG + chr6_3:1791862-1791881 None:intergenic 50.0%
TGTCCGACTCATGCCATTGT+CGG - chr6_3:1791929-1791948 Msa0933300:intron 50.0%
TGTCCGACAATGGCATGAGT+CGG + chr6_3:1791935-1791954 None:intergenic 50.0%
TTCCTCAGCGTGTTGAAGAC+GGG - chr6_3:1792047-1792066 Msa0933300:intron 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr6_3:1792590-1792609 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr6_3:1792587-1792606 Msa0933300:intron 50.0%
CAACCCCACTTAGTGGGAAA+AGG + chr6_3:1792595-1792614 None:intergenic 50.0%
! CTTTTCCCACTAAGTGGGGT+TGG - chr6_3:1792593-1792612 Msa0933300:intron 50.0%
! AGGATGAGTTGGCAAGGAAG+AGG - chr6_3:1792919-1792938 Msa0933300:intron 50.0%
! CCTAATGTAGGGAAGGTGCA+CGG - chr6_3:1794007-1794026 Msa0933300:intron 50.0%
! CTAATGTAGGGAAGGTGCAC+GGG - chr6_3:1794008-1794027 Msa0933300:intron 50.0%
! GGAAGGTGCACGGGTTATTT+GGG - chr6_3:1794017-1794036 Msa0933300:intron 50.0%
! GAAGGTGCACGGGTTATTTG+GGG - chr6_3:1794018-1794037 Msa0933300:intron 50.0%
GAGGACTCTCGGATCAATGA+TGG + chr6_3:1794069-1794088 None:intergenic 50.0%
! ATTTCCCTCTGGAGGACTCT+CGG + chr6_3:1794080-1794099 None:intergenic 50.0%
!!! GTGCTTTTTTATGGCCCTCC+AGG - chr6_3:1794285-1794304 Msa0933300:intron 50.0%
! TTTTATGGCCCTCCAGGAAC+AGG - chr6_3:1794291-1794310 Msa0933300:intron 50.0%
TTTATGGCCCTCCAGGAACA+GGG - chr6_3:1794292-1794311 Msa0933300:intron 50.0%
TTGTCTTCCCTGTTCCTGGA+GGG + chr6_3:1794302-1794321 None:intergenic 50.0%
ATTGTCTTCCCTGTTCCTGG+AGG + chr6_3:1794303-1794322 None:intergenic 50.0%
TCCAGGAACAGGGAAGACAA+TGG - chr6_3:1794302-1794321 Msa0933300:intron 50.0%
TGGGCCAAGAAGTCCAATAG+GGG - chr6_3:1795054-1795073 Msa0933300:intron 50.0%
TGATGCCACAAGAACCGACT+TGG + chr6_3:1795166-1795185 None:intergenic 50.0%
GTCACCGGTACGAAAGAGAA+GGG + chr6_3:1795375-1795394 None:intergenic 50.0%
CTGAATCAAGGTCACCAGGA+CGG + chr6_3:1795433-1795452 None:intergenic 50.0%
ACAGCTGAATCAAGGTCACC+AGG + chr6_3:1795437-1795456 None:intergenic 50.0%
GGTCTGCTACAGCTGAATCA+AGG + chr6_3:1795445-1795464 None:intergenic 50.0%
GTCCTAGAATTTCCCTTGCC+TGG - chr6_3:1795476-1795495 Msa0933300:intron 50.0%
CCTAGAATTTCCCTTGCCTG+GGG - chr6_3:1795478-1795497 Msa0933300:intron 50.0%
ATCGGAGAAAGAGACGGTGG+CGG + chr6_3:1790608-1790627 None:intergenic 55.0%
TGTGCGTGAGTTTCGGCCTT+CGG - chr6_3:1791579-1791598 Msa0933300:CDS 55.0%
TTCAAAGAGCCTAGCCCCGA+AGG + chr6_3:1791598-1791617 None:intergenic 55.0%
GTGTGTCTGGTGTCCGACAA+TGG + chr6_3:1791945-1791964 None:intergenic 55.0%
TCCTCAGCGTGTTGAAGACG+GGG - chr6_3:1792048-1792067 Msa0933300:intron 55.0%
GGTAGCCAACCCCACTTAGT+GGG + chr6_3:1792601-1792620 None:intergenic 55.0%
AGGTAGCCAACCCCACTTAG+TGG + chr6_3:1792602-1792621 None:intergenic 55.0%
!! ACTAAGTGGGGTTGGCTACC+TGG - chr6_3:1792601-1792620 Msa0933300:intron 55.0%
GTTGGCAAGGAAGAGGATGC+AGG - chr6_3:1792926-1792945 Msa0933300:intron 55.0%
!! AGTTGGTGGAGTGACTGCTC+TGG - chr6_3:1793747-1793766 Msa0933300:CDS 55.0%
CCGTGCACCTTCCCTACATT+AGG + chr6_3:1794010-1794029 None:intergenic 55.0%
! GGGAAGGTGCACGGGTTATT+TGG - chr6_3:1794016-1794035 Msa0933300:intron 55.0%
TTGATCCGAGAGTCCTCCAG+AGG - chr6_3:1794072-1794091 Msa0933300:intron 55.0%
TGATCCGAGAGTCCTCCAGA+GGG - chr6_3:1794073-1794092 Msa0933300:intron 55.0%
!! AGACCAGGGGTATTTCCCTC+TGG + chr6_3:1794091-1794110 None:intergenic 55.0%
AGAGGGAAATACCCCTGGTC+TGG - chr6_3:1794090-1794109 Msa0933300:intron 55.0%
GAGAAAACGTGCCAGACCAG+GGG + chr6_3:1794104-1794123 None:intergenic 55.0%
CGAGAAAACGTGCCAGACCA+GGG + chr6_3:1794105-1794124 None:intergenic 55.0%
TCGAGAAAACGTGCCAGACC+AGG + chr6_3:1794106-1794125 None:intergenic 55.0%
GCCATTGTCTTCCCTGTTCC+TGG + chr6_3:1794306-1794325 None:intergenic 55.0%
GACAATGGCTGCCAGAGAGT+TGG - chr6_3:1794317-1794336 Msa0933300:intron 55.0%
GGAGGAGATGTTGCTCCACT+CGG - chr6_3:1794994-1795013 Msa0933300:intron 55.0%
TGTTGCTCCACTCGGATCAC+AGG - chr6_3:1795002-1795021 Msa0933300:intron 55.0%
GTTACAGCCTGTGATCCGAG+TGG + chr6_3:1795012-1795031 None:intergenic 55.0%
GGTCACCGGTACGAAAGAGA+AGG + chr6_3:1795376-1795395 None:intergenic 55.0%
CCCCAGGCAAGGGAAATTCT+AGG + chr6_3:1795481-1795500 None:intergenic 55.0%
GAAGCCGCAGCTAAAACCGA+TGG - chr6_3:1795644-1795663 Msa0933300:CDS 55.0%
AGTGTCCAAGCTGCCGTGTA+TGG - chr6_3:1795701-1795720 Msa0933300:intron 55.0%
CACGGAACAAGCTTGCGTCA+AGG + chr6_3:1795742-1795761 None:intergenic 55.0%
GCCACCGTCTCTTTCTCCGA+TGG - chr6_3:1790607-1790626 Msa0933300:three_prime_UTR 60.0%
GCCATCGGAGAAAGAGACGG+TGG + chr6_3:1790611-1790630 None:intergenic 60.0%
GGCGCCATCGGAGAAAGAGA+CGG + chr6_3:1790614-1790633 None:intergenic 60.0%
GTGCGTGAGTTTCGGCCTTC+GGG - chr6_3:1791580-1791599 Msa0933300:CDS 60.0%
TGCGTGAGTTTCGGCCTTCG+GGG - chr6_3:1791581-1791600 Msa0933300:CDS 60.0%
CAGCCGGGGTCTACACAACA+AGG - chr6_3:1793770-1793789 Msa0933300:intron 60.0%
!! CCAGGGGTATTTCCCTCTGG+AGG + chr6_3:1794088-1794107 None:intergenic 60.0%
CCTCCAGAGGGAAATACCCC+TGG - chr6_3:1794085-1794104 Msa0933300:intron 60.0%
ACCAGGACGGTTCGTCGCAA+GGG + chr6_3:1795420-1795439 None:intergenic 60.0%
CGCTTCCATACACGGCAGCT+TGG + chr6_3:1795709-1795728 None:intergenic 60.0%
! GAAAGAGACGGTGGCGGTGG+TGG + chr6_3:1790602-1790621 None:intergenic 65.0%
! GGAGAAAGAGACGGTGGCGG+TGG + chr6_3:1790605-1790624 None:intergenic 65.0%
GAGTTTCGGCCTTCGGGGCT+AGG - chr6_3:1791586-1791605 Msa0933300:CDS 65.0%
GCCCCGTCTTCAACACGCTG+AGG + chr6_3:1792052-1792071 None:intergenic 65.0%
GGAGTGACTGCTCTGGCAGC+CGG - chr6_3:1793754-1793773 Msa0933300:CDS 65.0%
GAGTGACTGCTCTGGCAGCC+GGG - chr6_3:1793755-1793774 Msa0933300:CDS 65.0%
AGTGACTGCTCTGGCAGCCG+GGG - chr6_3:1793756-1793775 Msa0933300:CDS 65.0%
GACGGTTCGTCGCAAGGGCA+AGG + chr6_3:1795415-1795434 None:intergenic 65.0%
CACCAGGACGGTTCGTCGCA+AGG + chr6_3:1795421-1795440 None:intergenic 65.0%
! AGAGACGGTGGCGGTGGTGG+CGG + chr6_3:1790599-1790618 None:intergenic 70.0%
GCCCTTGCGACGAACCGTCC+TGG - chr6_3:1795416-1795435 Msa0933300:intron 70.0%
!! GGCGGTGGTGGCGGCGGTTA+AGG + chr6_3:1790590-1790609 None:intergenic 75.0%
!!! GACGGTGGCGGTGGTGGCGG+CGG + chr6_3:1790596-1790615 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1790502 1796119 1790502 ID=Msa0933300;Name=Msa0933300
chr6_3 mRNA 1790502 1796119 1790502 ID=Msa0933300-mRNA-1;Parent=Msa0933300;Name=Msa0933300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|0.87|0.77|9|203|607
chr6_3 exon 1790502 1790689 1790502 ID=Msa0933300-mRNA-1:exon:733;Parent=Msa0933300-mRNA-1
chr6_3 exon 1790777 1791296 1790777 ID=Msa0933300-mRNA-1:exon:732;Parent=Msa0933300-mRNA-1
chr6_3 exon 1791503 1791651 1791503 ID=Msa0933300-mRNA-1:exon:731;Parent=Msa0933300-mRNA-1
chr6_3 exon 1792271 1792604 1792271 ID=Msa0933300-mRNA-1:exon:730;Parent=Msa0933300-mRNA-1
chr6_3 exon 1792830 1792920 1792830 ID=Msa0933300-mRNA-1:exon:729;Parent=Msa0933300-mRNA-1
chr6_3 exon 1793279 1793588 1793279 ID=Msa0933300-mRNA-1:exon:728;Parent=Msa0933300-mRNA-1
chr6_3 exon 1793674 1793784 1793674 ID=Msa0933300-mRNA-1:exon:727;Parent=Msa0933300-mRNA-1
chr6_3 exon 1795568 1795663 1795568 ID=Msa0933300-mRNA-1:exon:726;Parent=Msa0933300-mRNA-1
chr6_3 exon 1795841 1796119 1795841 ID=Msa0933300-mRNA-1:exon:725;Parent=Msa0933300-mRNA-1
chr6_3 five_prime_UTR 1796069 1796119 1796069 ID=Msa0933300-mRNA-1:five_prime_utr;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1795841 1796068 1795841 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1795568 1795663 1795568 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1793674 1793784 1793674 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1793279 1793588 1793279 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1792830 1792920 1792830 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1792271 1792604 1792271 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1791503 1791651 1791503 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 CDS 1790792 1791296 1790792 ID=Msa0933300-mRNA-1:cds;Parent=Msa0933300-mRNA-1
chr6_3 three_prime_UTR 1790777 1790791 1790777 ID=Msa0933300-mRNA-1:three_prime_utr;Parent=Msa0933300-mRNA-1
chr6_3 three_prime_UTR 1790502 1790689 1790502 ID=Msa0933300-mRNA-1:three_prime_utr;Parent=Msa0933300-mRNA-1
Gene Sequence

>Msa0933300

ATGGCGAAAACCACTTTATCCGGTTTATTCTCAGCCTTAACCGCCGCCACCACCGCCACCGTCTCTTTCTCCGATGGCGCCATTCCTTCTTCATCTTCAGCAACCGATTCATCTTCGAAAGCGGGTAACGATAATCCAAGGAGTGCTTCTTCTGGATTCGATCCTGTACCTCTTGAAAAAGGTCTTAAAGCTCTCAAACAAATCTCTGCTTCATCATATGCTAAAAAGGTGTTTGAGATATTGAAGAAACAAGAGGAAACAAGGCAAGCTGAATTGGCTGCTAAGGTTGCTGAGTTTAATCGAATGAAAGCACAATTGGAGACTGAAAAACAAAGGATTGTATATGACGAAGAAAAAAAGCTGGCCCAACATCAGGCACAAACAAAATCTCAGATGGCTAAATATGAGGATGAGTTGGCAAGGAAGAGGATGCAGGCAGAAAATGAGTACCATAGAGTAAGGAACCAAGAGCTTGTAAAATTGCAAGAAGATTCATCAATCAGACTGGAGCAAACTAGACTTGAAACAGAAAAACACATTCAAGCACTACGAAAGCAAACTATAGAGGAGAAGGCTAAGCTTGAACATGACACAATCAGAGAAACAGCACTTGCAAAAGCAAAAGGGAAAGTGCTCGAAATAACGAAAAACGAAGAGATTGACAGGAGAAACCAACTTGAGAAGGGTGATTTAGATCGAGAAAAATGGATTTCTATCATAAATACTACCTTTGACCATATTGGAGGGGGCTTTAAAGCCATTCTAACAGATCGTAATAAGTTGGTCGTAACAGTTGGTGGAGTGACTGCTCTGGCAGCCGGGGTCTACACAACAAGGGAAGGTGCACGGGTTATTTGGGGATATGTTGATAGAATATTGGGACAACCATCATTGATCCGAGAGTCCTCCAGAGGGAAATACCCCTGGTCTGGCACGTTTTCTCGAGCCAAAAGCACCCTTTCTCGACTTGCTAAACCAGAATCTGTTTCAAATAATGGAAAGGGTTTTGGCGATGTAATTTTGCATCCTTCTCTTAGTAAGAGAATTGAGCAGCTGGCGTTTGCAACTGAAAACACAAAATTACATCAGGCACCATTCAGAAACGTGCTTTTTTATGGCCCTCCAGGAACAGGGAAGACAATGGCTGCCAGAGAGTTGGCTTACAAATCGGGATTGGATTATGCATTGATGACTGGAGGAGATGTTGCTCCACTCGGATCACAGGCTGTAACAAAGATACACGAGTTGTTTGATTGGGCCAAGAAGTCCAATAGGGGTTTACTGCTTTTTATTGACGAAGCTGATGCATTTCTATGCGAGCGGAACAAGACGTATATGAGTGAAGCACAAAGAAGTGCACTAAATGCCCTTCTCTTTCGTACCGGTGACCAATCTAAAGACATAGTCCTTGCCCTTGCGACGAACCGTCCTGGTGACCTTGATTCAGCTGTAGCAGACCGTATTGATGAGGTCCTAGAATTTCCCTTGCCTGGGGAAGAGGAGCGTTTTAAACTTCTTAAGCTCTACCTAGACAAGTACATAGCTCAAGCTGGATCAAGAAAATCTGGTTTATTATCATTGTTCAAAGCAAGCCCACAAAAGATAGAGATTAAAGGATTGAGCGATGATATCATAAAGGAAGCCGCAGCTAAAACCGATGGATTTTCCGGAAGGGAAATAGCGAAACTGATGGCAAGTGTCCAAGCTGCCGTGTATGGAAGCGACAACTGTATCCTTGACGCAAGCTTGTTCCGTGAAGTTGTAGATTATAAGGTTGCTGAGCATCAACAAAGAATAAAATTGGCAGCTTCTGATAAAGCTTAG
Protein sequence

>Msa0933300

MAKTTLSGLFSALTAATTATVSFSDGAIPSSSSATDSSSKAGNDNPRSASSGFDPVPLEKGLKALKQISASSYAKKVFEILKKQEETRQAELAAKVAEFNRMKAQLETEKQRIVYDEEKKLAQHQAQTKSQMAKYEDELARKRMQAENEYHRVRNQELVKLQEDSSIRLEQTRLETEKHIQALRKQTIEEKAKLEHDTIRETALAKAKGKVLEITKNEEIDRRNQLEKGDLDREKWISIINTTFDHIGGGFKAILTDRNKLVVTVGGVTALAAGVYTTREGARVIWGYVDRILGQPSLIRESSRGKYPWSGTFSRAKSTLSRLAKPESVSNNGKGFGDVILHPSLSKRIEQLAFATENTKLHQAPFRNVLFYGPPGTGKTMAARELAYKSGLDYALMTGGDVAPLGSQAVTKIHELFDWAKKSNRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGEEERFKLLKLYLDKYIAQAGSRKSGLLSLFKASPQKIEIKGLSDDIIKEAAAKTDGFSGREIAKLMASVQAAVYGSDNCILDASLFREVVDYKVAEHQQRIKLAASDKA*