Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019390 | XP_013467257.1 | 95.722 | 561 | 24 | 0 | 39 | 599 | 39 | 599 | 0.0 | 1021 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019390 | sp|Q9M8Z5|NSN1_ARATH | 64.950 | 602 | 180 | 8 | 1 | 595 | 1 | 578 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019390 | A0A072VI64 | 95.722 | 561 | 24 | 0 | 39 | 599 | 39 | 599 | 0.0 | 1021 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002790 | Msa0019390 | 0.807792 | 4.251802e-50 | -8.615850e-47 |
| Msa0019390 | Msa0021220 | 0.831481 | 1.629364e-55 | -8.615850e-47 |
| Msa0019390 | Msa0022970 | 0.853878 | 1.785976e-61 | -8.615850e-47 |
| Msa0019390 | Msa0029260 | 0.800568 | 1.356230e-48 | -8.615850e-47 |
| Msa0019390 | Msa0037770 | 0.821796 | 3.337294e-53 | -8.615850e-47 |
| Msa0019390 | Msa0043660 | 0.861905 | 7.385340e-64 | -8.615850e-47 |
| Msa0019390 | Msa0047160 | 0.853085 | 3.016384e-61 | -8.615850e-47 |
| Msa0019390 | Msa0050090 | 0.804289 | 2.319816e-49 | -8.615850e-47 |
| Msa0019390 | Msa0054440 | 0.810971 | 8.841423e-51 | -8.615850e-47 |
| Msa0019390 | Msa0066740 | 0.877681 | 5.169703e-69 | -8.615850e-47 |
| Msa0019390 | Msa0076780 | 0.837751 | 4.319715e-57 | -8.615850e-47 |
| Msa0019390 | Msa0077530 | 0.806311 | 8.750401e-50 | -8.615850e-47 |
| Msa0019390 | Msa0079820 | 0.848261 | 6.858601e-60 | -8.615850e-47 |
| Msa0019390 | Msa0090080 | 0.813224 | 2.852410e-51 | -8.615850e-47 |
| Msa0019390 | Msa0091560 | 0.812205 | 4.766545e-51 | -8.615850e-47 |
| Msa0019390 | Msa0094470 | 0.821727 | 3.461394e-53 | -8.615850e-47 |
| Msa0019390 | Msa0097600 | 0.803413 | 3.528445e-49 | -8.615850e-47 |
| Msa0019390 | Msa0115130 | 0.843210 | 1.611920e-58 | -8.615850e-47 |
| Msa0019390 | Msa0118590 | 0.802056 | 6.721983e-49 | -8.615850e-47 |
| Msa0019390 | Msa0118710 | 0.859756 | 3.319240e-63 | -8.615850e-47 |
| Msa0019390 | Msa0127390 | 0.815999 | 6.931322e-52 | -8.615850e-47 |
| Msa0019390 | Msa0137550 | 0.852824 | 3.583324e-61 | -8.615850e-47 |
| Msa0019390 | Msa0141660 | 0.806727 | 7.148337e-50 | -8.615850e-47 |
| Msa0019390 | Msa0144370 | 0.800473 | 1.417690e-48 | -8.615850e-47 |
| Msa0019390 | Msa0146770 | 0.878794 | 2.105210e-69 | -8.615850e-47 |
| Msa0019390 | Msa0158000 | 0.912104 | 2.853913e-83 | -8.615850e-47 |
| Msa0019390 | Msa0159170 | 0.802778 | 4.772975e-49 | -8.615850e-47 |
| Msa0019390 | Msa0189300 | 0.877642 | 5.333500e-69 | -8.615850e-47 |
| Msa0019390 | Msa0221030 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0019390 | Msa0228120 | 0.812412 | 4.294987e-51 | -8.615850e-47 |
| Msa0019390 | Msa0228170 | 0.812664 | 3.782937e-51 | -8.615850e-47 |
| Msa0019390 | Msa0229170 | 0.804389 | 2.211844e-49 | -8.615850e-47 |
| Msa0019390 | Msa0231660 | 0.881704 | 1.923908e-70 | -8.615850e-47 |
| Msa0019390 | Msa0262480 | 0.805955 | 1.039420e-49 | -8.615850e-47 |
| Msa0019390 | Msa0289610 | 0.801813 | 7.542210e-49 | -8.615850e-47 |
| Msa0019390 | Msa0300350 | 0.837502 | 5.004197e-57 | -8.615850e-47 |
| Msa0019390 | Msa0309750 | 0.804681 | 1.922450e-49 | -8.615850e-47 |
| Msa0019390 | Msa0325590 | 0.808618 | 2.834313e-50 | -8.615850e-47 |
| Msa0019390 | Msa0327300 | 0.813190 | 2.901919e-51 | -8.615850e-47 |
| Msa0019390 | Msa0393940 | 0.803315 | 3.696047e-49 | -8.615850e-47 |
| Msa0019390 | Msa0403500 | 0.833903 | 4.080768e-56 | -8.615850e-47 |
| Msa0019390 | Msa0409090 | 0.801115 | 1.048263e-48 | -8.615850e-47 |
| Msa0019390 | Msa0436200 | 0.800895 | 1.162826e-48 | -8.615850e-47 |
| Msa0019390 | Msa0437020 | 0.809089 | 2.247949e-50 | -8.615850e-47 |
| Msa0019390 | Msa0455720 | 0.828196 | 1.028490e-54 | -8.615850e-47 |
| Msa0019390 | Msa0467220 | 0.807518 | 4.859792e-50 | -8.615850e-47 |
| Msa0019390 | Msa0481030 | 0.809414 | 1.914800e-50 | -8.615850e-47 |
| Msa0019390 | Msa0482130 | 0.845878 | 3.085010e-59 | -8.615850e-47 |
| Msa0019390 | Msa0485510 | 0.825772 | 3.906885e-54 | -8.615850e-47 |
| Msa0019390 | Msa0489410 | 0.810655 | 1.034743e-50 | -8.615850e-47 |
| Msa0019390 | Msa0500470 | 0.815422 | 9.322795e-52 | -8.615850e-47 |
| Msa0019390 | Msa0542090 | 0.847579 | 1.057508e-59 | -8.615850e-47 |
| Msa0019390 | Msa0542130 | 0.849302 | 3.527911e-60 | -8.615850e-47 |
| Msa0019390 | Msa0550540 | 0.820333 | 7.248474e-53 | -8.615850e-47 |
| Msa0019390 | Msa0554290 | 0.881663 | 1.989964e-70 | -8.615850e-47 |
| Msa0019390 | Msa0573140 | 0.800570 | 1.354788e-48 | -8.615850e-47 |
| Msa0019390 | Msa0581280 | 0.867133 | 1.712384e-65 | -8.615850e-47 |
| Msa0019390 | Msa0601150 | 0.820616 | 6.244187e-53 | -8.615850e-47 |
| Msa0019390 | Msa0603320 | 0.808204 | 3.474704e-50 | -8.615850e-47 |
| Msa0019390 | Msa0605000 | 0.887934 | 9.224431e-73 | -8.615850e-47 |
| Msa0019390 | Msa0612390 | 0.865105 | 7.517830e-65 | -8.615850e-47 |
| Msa0019390 | Msa0618930 | 0.817227 | 3.679380e-52 | -8.615850e-47 |
| Msa0019390 | Msa0638370 | 0.834486 | 2.915267e-56 | -8.615850e-47 |
| Msa0019390 | Msa0648780 | 0.902930 | 5.854684e-79 | -8.615850e-47 |
| Msa0019390 | Msa0660850 | 0.818272 | 2.137727e-52 | -8.615850e-47 |
| Msa0019390 | Msa0685140 | 0.860849 | 1.550768e-63 | -8.615850e-47 |
| Msa0019390 | Msa0689260 | 0.806102 | 9.680983e-50 | -8.615850e-47 |
| Msa0019390 | Msa0691290 | 0.816059 | 6.720866e-52 | -8.615850e-47 |
| Msa0019390 | Msa0698800 | 0.815095 | 1.101616e-51 | -8.615850e-47 |
| Msa0019390 | Msa0709040 | 0.823224 | 1.554111e-53 | -8.615850e-47 |
| Msa0019390 | Msa0709730 | 0.865854 | 4.365256e-65 | -8.615850e-47 |
| Msa0019390 | Msa0715650 | 0.860090 | 2.630864e-63 | -8.615850e-47 |
| Msa0019390 | Msa0719420 | 0.895033 | 1.407102e-75 | -8.615850e-47 |
| Msa0019390 | Msa0719610 | 0.893865 | 4.220363e-75 | -8.615850e-47 |
| Msa0019390 | Msa0729200 | 0.815132 | 1.081262e-51 | -8.615850e-47 |
| Msa0019390 | Msa0753140 | 0.820955 | 5.217535e-53 | -8.615850e-47 |
| Msa0019390 | Msa0757940 | 0.815716 | 8.015401e-52 | -8.615850e-47 |
| Msa0019390 | Msa0763330 | 0.901640 | 2.184818e-78 | -8.615850e-47 |
| Msa0019390 | Msa0769590 | 0.826703 | 2.346024e-54 | -8.615850e-47 |
| Msa0019390 | Msa0772480 | 0.865114 | 7.467607e-65 | -8.615850e-47 |
| Msa0019390 | Msa0789680 | 0.895640 | 7.909467e-76 | -8.615850e-47 |
| Msa0019390 | Msa0790120 | 0.807641 | 4.578075e-50 | -8.615850e-47 |
| Msa0019390 | Msa0795820 | 0.807370 | 5.224005e-50 | -8.615850e-47 |
| Msa0019390 | Msa0798440 | 0.857983 | 1.124941e-62 | -8.615850e-47 |
| Msa0019390 | Msa0799260 | 0.826271 | 2.973739e-54 | -8.615850e-47 |
| Msa0019390 | Msa0799310 | 0.822786 | 1.966479e-53 | -8.615850e-47 |
| Msa0019390 | Msa0802410 | 0.878214 | 3.365234e-69 | -8.615850e-47 |
| Msa0019390 | Msa0806880 | 0.843415 | 1.420712e-58 | -8.615850e-47 |
| Msa0019390 | Msa0830040 | 0.876194 | 1.694461e-68 | -8.615850e-47 |
| Msa0019390 | Msa0830540 | 0.842518 | 2.463270e-58 | -8.615850e-47 |
| Msa0019390 | Msa0859180 | 0.857932 | 1.165401e-62 | -8.615850e-47 |
| Msa0019390 | Msa0869130 | 0.865075 | 7.681102e-65 | -8.615850e-47 |
| Msa0019390 | Msa0879540 | 0.855976 | 4.394453e-62 | -8.615850e-47 |
| Msa0019390 | Msa0882580 | 0.857651 | 1.411504e-62 | -8.615850e-47 |
| Msa0019390 | Msa0909950 | 0.825305 | 5.039868e-54 | -8.615850e-47 |
| Msa0019390 | Msa0913240 | 0.821044 | 4.977608e-53 | -8.615850e-47 |
| Msa0019390 | Msa0925770 | 0.883943 | 2.923113e-71 | -8.615850e-47 |
| Msa0019390 | Msa0933300 | 0.881873 | 1.670507e-70 | -8.615850e-47 |
| Msa0019390 | Msa0945440 | 0.859777 | 3.270323e-63 | -8.615850e-47 |
| Msa0019390 | Msa0966010 | 0.844888 | 5.719126e-59 | -8.615850e-47 |
| Msa0019390 | Msa0966210 | 0.824793 | 6.657376e-54 | -8.615850e-47 |
| Msa0019390 | Msa0989540 | 0.828443 | 8.963861e-55 | -8.615850e-47 |
| Msa0019390 | Msa1019240 | 0.800866 | 1.178774e-48 | -8.615850e-47 |
| Msa0019390 | Msa1027640 | 0.817796 | 2.738750e-52 | -8.615850e-47 |
| Msa0019390 | Msa1044480 | 0.820612 | 6.257106e-53 | -8.615850e-47 |
| Msa0019390 | Msa1064260 | 0.825700 | 4.063947e-54 | -8.615850e-47 |
| Msa0019390 | Msa1066190 | 0.813017 | 3.166117e-51 | -8.615850e-47 |
| Msa0019390 | Msa1068330 | 0.807035 | 6.153222e-50 | -8.615850e-47 |
| Msa0019390 | Msa1072710 | 0.823747 | 1.172937e-53 | -8.615850e-47 |
| Msa0019390 | Msa1088290 | 0.805348 | 1.393862e-49 | -8.615850e-47 |
| Msa0019390 | Msa1088490 | 0.820143 | 8.013547e-53 | -8.615850e-47 |
| Msa0019390 | Msa1133400 | 0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0019390 | Msa1135890 | 0.823248 | 1.534322e-53 | -8.615850e-47 |
| Msa0019390 | Msa1153060 | 0.832749 | 7.915550e-56 | -8.615850e-47 |
| Msa0019390 | Msa1197320 | 0.842193 | 3.002017e-58 | -8.615850e-47 |
| Msa0019390 | Msa1209200 | 0.843814 | 1.111297e-58 | -8.615850e-47 |
| Msa0019390 | Msa1209260 | 0.874602 | 5.940717e-68 | -8.615850e-47 |
| Msa0019390 | Msa1209760 | 0.810800 | 9.626261e-51 | -8.615850e-47 |
| Msa0019390 | Msa1214120 | 0.824215 | 9.105532e-54 | -8.615850e-47 |
| Msa0019390 | Msa1250790 | 0.830390 | 3.017019e-55 | -8.615850e-47 |
| Msa0019390 | Msa1260530 | 0.841705 | 4.039831e-58 | -8.615850e-47 |
| Msa0019390 | Msa1265630 | 0.852128 | 5.655055e-61 | -8.615850e-47 |
| Msa0019390 | Msa1275680 | 0.805229 | 1.476667e-49 | -8.615850e-47 |
| Msa0019390 | Msa1302380 | 0.812252 | 4.654761e-51 | -8.615850e-47 |
| Msa0019390 | Msa1331710 | 0.834069 | 3.709971e-56 | -8.615850e-47 |
| Msa0019390 | Msa1332590 | 0.811589 | 6.491195e-51 | -8.615850e-47 |
| Msa0019390 | Msa1351540 | 0.804080 | 2.564959e-49 | -8.615850e-47 |
| Msa0019390 | Msa1353430 | 0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0019390 | Msa1355700 | 0.844208 | 8.716254e-59 | -8.615850e-47 |
| Msa0019390 | Msa1358250 | 0.809365 | 1.961196e-50 | -8.615850e-47 |
| Msa0019390 | Msa1359970 | 0.829876 | 4.026786e-55 | -8.615850e-47 |
| Msa0019390 | Msa1362090 | 0.802755 | 4.825620e-49 | -8.615850e-47 |
| Msa0019390 | Msa1366180 | 0.814822 | 1.266687e-51 | -8.615850e-47 |
| Msa0019390 | Msa1387410 | 0.839064 | 1.981059e-57 | -8.615850e-47 |
| Msa0019390 | Msa1394290 | 0.828299 | 9.714372e-55 | -8.615850e-47 |
| Msa0019390 | Msa1413500 | 0.847505 | 1.108442e-59 | -8.615850e-47 |
| Msa0019390 | Msa1426370 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0019390 | Msa1426490 | 0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa0019390 | Msa1457920 | 0.838548 | 2.693480e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019390 | MtrunA17_Chr1g0170031 | 95.722 | 561 | 24 | 0 | 39 | 599 | 39 | 599 | 0.0 | 1021 |
| Msa0019390 | MtrunA17_Chr2g0317811 | 34.848 | 396 | 225 | 7 | 125 | 513 | 197 | 566 | 5.19e-60 | 209 |
| Msa0019390 | MtrunA17_Chr4g0042571 | 38.676 | 287 | 153 | 3 | 125 | 411 | 189 | 452 | 7.27e-58 | 203 |
| Msa0019390 | MtrunA17_Chr4g0025451 | 27.389 | 314 | 188 | 5 | 136 | 411 | 162 | 473 | 2.91e-27 | 116 |
| Msa0019390 | MtrunA17_Chr7g0259841 | 29.756 | 205 | 122 | 5 | 144 | 346 | 119 | 303 | 4.06e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019390 | AT3G07050.1 | 64.950 | 602 | 180 | 8 | 1 | 595 | 1 | 578 | 0.0 | 660 |
| Msa0019390 | AT1G52980.1 | 38.235 | 306 | 166 | 3 | 125 | 430 | 199 | 481 | 1.07e-58 | 206 |
| Msa0019390 | AT2G27200.1 | 28.479 | 309 | 188 | 5 | 136 | 411 | 161 | 469 | 2.33e-30 | 125 |
| Msa0019390 | AT1G08410.1 | 27.586 | 319 | 194 | 5 | 136 | 417 | 161 | 479 | 4.17e-30 | 125 |
| Msa0019390 | AT4G02790.1 | 29.371 | 286 | 154 | 10 | 144 | 412 | 118 | 372 | 8.72e-15 | 77.0 |
Find 138 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGCTCGCCTCAATTT+TGG | 0.124286 | 1_1:-33684493 | None:intergenic |
| TTCAATTCCTGTTCCTTAAA+AGG | 0.143573 | 1_1:-33679160 | None:intergenic |
| AAAGCAATACATGACGTTTA+TGG | 0.143814 | 1_1:-33680568 | None:intergenic |
| AATAGTGAAACTTCATTTAT+TGG | 0.146286 | 1_1:+33683846 | Msa0019390:CDS |
| CTACTGTCCCTTCAACAATT+TGG | 0.212143 | 1_1:+33684915 | Msa0019390:three_prime_UTR |
| CAAAGTTGATTACTTCAAAA+AGG | 0.273492 | 1_1:+33684579 | Msa0019390:CDS |
| CCAATACAGAAACCAAGTTT+TGG | 0.276202 | 1_1:+33684827 | Msa0019390:intron |
| TCTTGTTTCAGACTCGTAAA+AGG | 0.282990 | 1_1:+33680211 | Msa0019390:intron |
| TACAGATTGTGGCTACTGTT+AGG | 0.291683 | 1_1:+33683528 | Msa0019390:CDS |
| GGTTCTCCTTGATCCCTAAC+TGG | 0.296301 | 1_1:-33683765 | None:intergenic |
| AGAAGCCGTTTCAACTGAAT+TGG | 0.312062 | 1_1:-33680265 | None:intergenic |
| CTTCAAGTACCTGGGCTAAC+TGG | 0.316334 | 1_1:-33682232 | None:intergenic |
| TAGGGCCTTTGCCAGTGATT+TGG | 0.321863 | 1_1:+33680439 | Msa0019390:CDS |
| AACCCTTTCAAACCCTAAAA+TGG | 0.323396 | 1_1:+33678884 | Msa0019390:exon |
| ATAGTGAAACTTCATTTATT+GGG | 0.325794 | 1_1:+33683847 | Msa0019390:CDS |
| AAGCAATACATGACGTTTAT+GGG | 0.328299 | 1_1:-33680567 | None:intergenic |
| AGAACGTGCTCTTGCTGAAT+TGG | 0.338023 | 1_1:+33679201 | Msa0019390:CDS |
| TCCTTAAAAGGCCAATCATT+TGG | 0.343965 | 1_1:-33679148 | None:intergenic |
| TTGCAGAGAGTAAGAGTAAG+AGG | 0.361504 | 1_1:+33679002 | Msa0019390:intron |
| GACATCAATCACTGTTGGTT+TGG | 0.362256 | 1_1:+33681985 | Msa0019390:CDS |
| CAATGATGAGGATGAATCTA+TGG | 0.362444 | 1_1:+33684378 | Msa0019390:CDS |
| CTTTGATGAGACAATGTTAG+AGG | 0.363951 | 1_1:+33683929 | Msa0019390:CDS |
| GTTGAGGTTGATGCATGATT+TGG | 0.366255 | 1_1:+33684688 | Msa0019390:exon |
| AGAAAACTCTGAAACTATCT+TGG | 0.371936 | 1_1:-33683796 | None:intergenic |
| GTCGATGTCAGTGCTAGTGC+TGG | 0.375077 | 1_1:+33682067 | Msa0019390:CDS |
| GTTCTTCATGACTGGAATAT+AGG | 0.376417 | 1_1:+33683602 | Msa0019390:CDS |
| TTGAATTCTAAACACTATAA+AGG | 0.386427 | 1_1:-33685032 | None:intergenic |
| AACACTGAGGTTCCCATGTC+TGG | 0.390788 | 1_1:+33684664 | Msa0019390:CDS |
| CCTTGATGCCCGGGATCCCT+TGG | 0.391586 | 1_1:+33680499 | Msa0019390:CDS |
| TTGCCCTGGTGTTGTCATGC+TGG | 0.392424 | 1_1:+33682144 | Msa0019390:CDS |
| CTTTGCCAGTGATTTGGATC+AGG | 0.403021 | 1_1:+33680445 | Msa0019390:CDS |
| ACAGATTGTGGCTACTGTTA+GGG | 0.404092 | 1_1:+33683529 | Msa0019390:CDS |
| TCAATCACTGTTGGTTTGGT+TGG | 0.404100 | 1_1:+33681989 | Msa0019390:CDS |
| TTTCCATAGATAGTTCAGAT+AGG | 0.404505 | 1_1:+33680420 | Msa0019390:intron |
| CGCAACAGTAGGAACAGTTT+CGG | 0.415285 | 1_1:-33680298 | None:intergenic |
| ACAAAATGAGAAGTTATATA+CGG | 0.449103 | 1_1:+33684453 | Msa0019390:CDS |
| AGAGGATGTTAGCAAGGAAA+AGG | 0.452580 | 1_1:+33684411 | Msa0019390:CDS |
| TACTAGAGGTCCTTGATGCC+CGG | 0.453164 | 1_1:+33680489 | Msa0019390:CDS |
| AGCCAGCTCATCTGATCCTA+TGG | 0.453591 | 1_1:+33684540 | Msa0019390:CDS |
| AACGAGTACCCAAGGGATCC+CGG | 0.456156 | 1_1:-33680508 | None:intergenic |
| TGCTTAATCCAAATTGTTGA+AGG | 0.456365 | 1_1:-33684923 | None:intergenic |
| TTCTTGACCTACCCAAAACT+TGG | 0.458091 | 1_1:-33684839 | None:intergenic |
| GTCAAAGCAAGAGATTCGTT+TGG | 0.461640 | 1_1:+33682099 | Msa0019390:CDS |
| CTTGATGCCCGGGATCCCTT+GGG | 0.462440 | 1_1:+33680500 | Msa0019390:CDS |
| ATCCTGGTATTCCAAATGAT+TGG | 0.467524 | 1_1:+33679137 | Msa0019390:CDS |
| CAAGAATCGTTCTTCATGAC+TGG | 0.469526 | 1_1:+33683594 | Msa0019390:CDS |
| GGCCAATCATTTGGAATACC+AGG | 0.469715 | 1_1:-33679139 | None:intergenic |
| ACTGTTGCGAAGACTAATAA+AGG | 0.470225 | 1_1:+33680312 | Msa0019390:CDS |
| TCATTGTCATCAACATTCTC+AGG | 0.473233 | 1_1:-33684361 | None:intergenic |
| AACATATCACGCATGAGGTC+AGG | 0.475542 | 1_1:+33685071 | Msa0019390:three_prime_UTR |
| TCAATTAAGTGGTAAGAAGA+AGG | 0.475631 | 1_1:+33679105 | Msa0019390:CDS |
| AGAAAGAAGCTCGTAAAGAA+AGG | 0.477638 | 1_1:+33679230 | Msa0019390:CDS |
| TTCCATAGATAGTTCAGATA+GGG | 0.481540 | 1_1:+33680421 | Msa0019390:intron |
| AGACTACTCTTACCAACATT+GGG | 0.485202 | 1_1:-33682016 | None:intergenic |
| GTTCTCCTTGATCCCTAACT+GGG | 0.492076 | 1_1:-33683764 | None:intergenic |
| AAGACTACTCTTACCAACAT+TGG | 0.493721 | 1_1:-33682017 | None:intergenic |
| TCATCAACTGAATCAAAACT+TGG | 0.498766 | 1_1:-33683500 | None:intergenic |
| CAGACTCGTAAAAGGAAGGC+GGG | 0.500876 | 1_1:+33680219 | Msa0019390:intron |
| AAGATGAGAGGGCAACTTGA+AGG | 0.504734 | 1_1:-33683909 | None:intergenic |
| TAAAGAGATATCAGCACCCT+AGG | 0.506813 | 1_1:-33683470 | None:intergenic |
| TAACTCCAATTCAGTTGAAA+CGG | 0.507020 | 1_1:+33680260 | Msa0019390:CDS |
| ATCTATGGAAAGTGATAAAG+AGG | 0.508499 | 1_1:+33684393 | Msa0019390:CDS |
| ATCAACCTCAACACCAGACA+TGG | 0.513629 | 1_1:-33684677 | None:intergenic |
| AAGAAGGTTGAGAAAGATCC+TGG | 0.515836 | 1_1:+33679121 | Msa0019390:CDS |
| CCAAGGGATCCCGGGCATCA+AGG | 0.518140 | 1_1:-33680499 | None:intergenic |
| TGATAAAGAGGATGTTAGCA+AGG | 0.518807 | 1_1:+33684405 | Msa0019390:CDS |
| TTTAGGGTTTGAAAGGGTTG+CGG | 0.524075 | 1_1:-33678880 | None:intergenic |
| GGATGACAAAGCAGTTAAGT+TGG | 0.529915 | 1_1:+33684321 | Msa0019390:intron |
| ATCCATAGGATCAGATGAGC+TGG | 0.532677 | 1_1:-33684542 | None:intergenic |
| GAAAGAAGCTCGTAAAGAAA+GGG | 0.534276 | 1_1:+33679231 | Msa0019390:CDS |
| GGTTCCCATGTCTGGTGTTG+AGG | 0.540325 | 1_1:+33684672 | Msa0019390:CDS |
| ACTAGAGGTCCTTGATGCCC+GGG | 0.544113 | 1_1:+33680490 | Msa0019390:CDS |
| CTCAAGACATCAATCACTGT+TGG | 0.544568 | 1_1:+33681980 | Msa0019390:CDS |
| GAAACTATCTTGGCCTCTGA+AGG | 0.545238 | 1_1:-33683786 | None:intergenic |
| TTTGGGTAGGTCAAGAAATG+AGG | 0.546736 | 1_1:+33684845 | Msa0019390:three_prime_UTR |
| TGTTAGGGGCAAGCTCAAGA+AGG | 0.553084 | 1_1:+33683544 | Msa0019390:CDS |
| TGATGACTTCCTACAGATTG+TGG | 0.555283 | 1_1:+33683517 | Msa0019390:CDS |
| TGAGAAGTTATATACGGCGG+AGG | 0.555785 | 1_1:+33684459 | Msa0019390:CDS |
| GCTTAATCCAAATTGTTGAA+GGG | 0.556503 | 1_1:-33684922 | None:intergenic |
| TTGGTTGGACTGCCCAATGT+TGG | 0.564722 | 1_1:+33682004 | Msa0019390:CDS |
| CTCGAGAGTCAGTTGAGAAG+TGG | 0.566914 | 1_1:+33680697 | Msa0019390:CDS |
| GTTAAGTTGCTGGATTGCCC+TGG | 0.568716 | 1_1:+33682130 | Msa0019390:CDS |
| TGCACTTGAAAGCGACAGTA+GGG | 0.569257 | 1_1:-33680743 | None:intergenic |
| ACGAGTACCCAAGGGATCCC+GGG | 0.570844 | 1_1:-33680507 | None:intergenic |
| CTGCACTTGAAAGCGACAGT+AGG | 0.571229 | 1_1:-33680744 | None:intergenic |
| ACATGATCTAACTCAACAGT+AGG | 0.573759 | 1_1:-33683879 | None:intergenic |
| TCGATGTCAGTGCTAGTGCT+GGG | 0.574430 | 1_1:+33682068 | Msa0019390:CDS |
| TTGCAATTAAGTGATTGTCT+CGG | 0.574961 | 1_1:+33680825 | Msa0019390:CDS |
| CTGATCCAAATCACTGGCAA+AGG | 0.574966 | 1_1:-33680444 | None:intergenic |
| AGGACACAATGGATGCTGAC+GGG | 0.575357 | 1_1:+33684599 | Msa0019390:CDS |
| TTATTAGTCTTCGCAACAGT+AGG | 0.576810 | 1_1:-33680309 | None:intergenic |
| GAGTCCAGCATGACAACACC+AGG | 0.578166 | 1_1:-33682148 | None:intergenic |
| AAGGAAGGCGGGGTTGCCAG+TGG | 0.578828 | 1_1:+33680230 | Msa0019390:CDS |
| TAAAGAGTTTAACATTGATG+AGG | 0.580829 | 1_1:+33683818 | Msa0019390:CDS |
| AAAGAGATATCAGCACCCTA+GGG | 0.582649 | 1_1:-33683469 | None:intergenic |
| GTGCTAGTGCTGGGTCGACA+AGG | 0.591514 | 1_1:+33682077 | Msa0019390:CDS |
| GTTTCAGACTCGTAAAAGGA+AGG | 0.594629 | 1_1:+33680215 | Msa0019390:intron |
| GTTAACACAACGAGTACCCA+AGG | 0.598523 | 1_1:-33680516 | None:intergenic |
| AAGTCATAATCACCATCCAT+AGG | 0.599349 | 1_1:-33684556 | None:intergenic |
| AATAACCTGATCCAAATCAC+TGG | 0.599929 | 1_1:-33680450 | None:intergenic |
| AAGTTGGCAAAACAAGATGA+AGG | 0.603504 | 1_1:+33684337 | Msa0019390:CDS |
| TTGTCTCATCAAAGATGAGA+GGG | 0.604223 | 1_1:-33683920 | None:intergenic |
| CAGATTGTGGCTACTGTTAG+GGG | 0.604493 | 1_1:+33683530 | Msa0019390:CDS |
| CACTTCTCAACTGACTCTCG+AGG | 0.609711 | 1_1:-33680696 | None:intergenic |
| TGCAGAGAGTAAGAGTAAGA+GGG | 0.611372 | 1_1:+33679003 | Msa0019390:intron |
| TTGGAGTTATCATCATCCAC+TGG | 0.612027 | 1_1:-33680246 | None:intergenic |
| AAGGACACAATGGATGCTGA+CGG | 0.613808 | 1_1:+33684598 | Msa0019390:CDS |
| GAGAAGTTATATACGGCGGA+GGG | 0.617540 | 1_1:+33684460 | Msa0019390:CDS |
| GTATACTTAATCCAAAATTG+AGG | 0.617540 | 1_1:+33684482 | Msa0019390:CDS |
| AGCTCATCTGATCCTATGGA+TGG | 0.618484 | 1_1:+33684544 | Msa0019390:CDS |
| TAACAGTAGCCACAATCTGT+AGG | 0.620654 | 1_1:-33683526 | None:intergenic |
| GTTAGGGGCAAGCTCAAGAA+GGG | 0.621289 | 1_1:+33683545 | Msa0019390:CDS |
| TTAGCTGATCCAGTTAGCCC+AGG | 0.623020 | 1_1:+33682223 | Msa0019390:CDS |
| AGACTCGTAAAAGGAAGGCG+GGG | 0.632237 | 1_1:+33680220 | Msa0019390:intron |
| ATTGTCTCATCAAAGATGAG+AGG | 0.635020 | 1_1:-33683921 | None:intergenic |
| ATGGATGCTGACGGGAGTGA+TGG | 0.636581 | 1_1:+33684607 | Msa0019390:CDS |
| TCTCCTTGATCCCTAACTGG+GGG | 0.637476 | 1_1:-33683762 | None:intergenic |
| TAGCACTGACATCGACAGCA+TGG | 0.638654 | 1_1:-33682060 | None:intergenic |
| CAGTAGGGAATTCTTCTCGA+AGG | 0.646359 | 1_1:-33680728 | None:intergenic |
| TTAGTAACATATCACGCATG+AGG | 0.646379 | 1_1:+33685066 | Msa0019390:three_prime_UTR |
| AGGGGCAAGCTCAAGAAGGG+TGG | 0.649554 | 1_1:+33683548 | Msa0019390:CDS |
| TCAGACTCGTAAAAGGAAGG+CGG | 0.656498 | 1_1:+33680218 | Msa0019390:intron |
| GAATTATGCAAGAAGCGACA+AGG | 0.656552 | 1_1:+33680875 | Msa0019390:CDS |
| TCAACCTCAACACCAGACAT+GGG | 0.660182 | 1_1:-33684676 | None:intergenic |
| GATGCTGACGGGAGTGATGG+TGG | 0.660259 | 1_1:+33684610 | Msa0019390:CDS |
| GGATCAAGGAGAACCTTCAG+AGG | 0.661640 | 1_1:+33683773 | Msa0019390:CDS |
| AGAGTCTGATGTCATACTAG+AGG | 0.662679 | 1_1:+33680475 | Msa0019390:CDS |
| TTCTCCTTGATCCCTAACTG+GGG | 0.665827 | 1_1:-33683763 | None:intergenic |
| ACTTCTCAACTGACTCTCGA+GGG | 0.678144 | 1_1:-33680695 | None:intergenic |
| AGAGATATCAGCACCCTAGG+GGG | 0.685324 | 1_1:-33683467 | None:intergenic |
| TTAACACAACGAGTACCCAA+GGG | 0.685445 | 1_1:-33680515 | None:intergenic |
| AAATGAGAAGTTATATACGG+CGG | 0.696987 | 1_1:+33684456 | Msa0019390:CDS |
| GAATGTTGATGACAATGATG+AGG | 0.708173 | 1_1:+33684366 | Msa0019390:CDS |
| TATCACGCATGAGGTCAGGA+CGG | 0.714892 | 1_1:+33685075 | Msa0019390:three_prime_UTR |
| AAGAGATATCAGCACCCTAG+GGG | 0.719982 | 1_1:-33683468 | None:intergenic |
| AGTCCAGCATGACAACACCA+GGG | 0.773850 | 1_1:-33682147 | None:intergenic |
| GATGGTGGTGACGACAACGA+TGG | 0.816998 | 1_1:+33684625 | Msa0019390:CDS |
| TGATGAACAAGTCAACACTG+AGG | 0.819656 | 1_1:+33684651 | Msa0019390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTTATTATTATTATTATT+AGG | + | chr1_1:33681191-33681210 | Msa0019390:intron | 10.0% |
| !! | CCTTATTATTATTATTATTA+GGG | + | chr1_1:33681192-33681211 | Msa0019390:intron | 10.0% |
| !! | AAATAAGAGAATTAATTAAT+GGG | - | chr1_1:33682270-33682289 | None:intergenic | 10.0% |
| !! | TAAATAAGAGAATTAATTAA+TGG | - | chr1_1:33682271-33682290 | None:intergenic | 10.0% |
| !!! | ATTAATTAATTCTCTTATTT+AGG | + | chr1_1:33682270-33682289 | Msa0019390:intron | 10.0% |
| !!! | TTTAGTTTAAACTTTAAAAT+TGG | + | chr1_1:33682694-33682713 | Msa0019390:intron | 10.0% |
| !!! | TTCTTTTTTTTTTTTTACTA+TGG | + | chr1_1:33683109-33683128 | Msa0019390:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTTACTAT+GGG | + | chr1_1:33683110-33683129 | Msa0019390:intron | 10.0% |
| !!! | ATTTCAAAATTAAGATTTTA+AGG | - | chr1_1:33683371-33683390 | None:intergenic | 10.0% |
| !! | AAATATGTTAAAACATTATA+AGG | + | chr1_1:33683980-33683999 | Msa0019390:intron | 10.0% |
| !! | ATTTATTGTTTGAAAATTGA+TGG | + | chr1_1:33679307-33679326 | Msa0019390:intron | 15.0% |
| !! | TTTATTGTTTGAAAATTGAT+GGG | + | chr1_1:33679308-33679327 | Msa0019390:intron | 15.0% |
| !!! | AAAAATTAAATTTTGTGAGA+TGG | + | chr1_1:33679342-33679361 | Msa0019390:intron | 15.0% |
| !!! | AAAATTAAATTTTGTGAGAT+GGG | + | chr1_1:33679343-33679362 | Msa0019390:intron | 15.0% |
| !!! | TAAGTTTTTTTTTCTTTTGA+AGG | - | chr1_1:33679685-33679704 | None:intergenic | 15.0% |
| !! | TCAAAAGAAAAAAAAACTTA+TGG | + | chr1_1:33679685-33679704 | Msa0019390:intron | 15.0% |
| !! | ACATAAAAAATAAAAAGAGA+GGG | - | chr1_1:33680935-33680954 | None:intergenic | 15.0% |
| !! | AACATAAAAAATAAAAAGAG+AGG | - | chr1_1:33680936-33680955 | None:intergenic | 15.0% |
| !! | CCCTAATAATAATAATAATA+AGG | - | chr1_1:33681195-33681214 | None:intergenic | 15.0% |
| !! | AATAAGAGAATTAATTAATG+GGG | - | chr1_1:33682269-33682288 | None:intergenic | 15.0% |
| !!! | TAATACTGATAATTGTTTTT+AGG | + | chr1_1:33682445-33682464 | Msa0019390:intron | 15.0% |
| !!! | GCAATTTTAATTAAATTTTG+TGG | + | chr1_1:33682485-33682504 | Msa0019390:intron | 15.0% |
| !! | AGATTAAAAATTACAATGAA+AGG | - | chr1_1:33684214-33684233 | None:intergenic | 15.0% |
| !! | AAAAATTGAAGTTAAATTCT+CGG | - | chr1_1:33684987-33685006 | None:intergenic | 15.0% |
| !!! | TAATGATGATGAAATTGAAA+AGG | - | chr1_1:33678946-33678965 | None:intergenic | 20.0% |
| !!! | ATTTTGTACTTTTTCTTCAA+TGG | - | chr1_1:33679031-33679050 | None:intergenic | 20.0% |
| !!! | TAGTTGAAGTATATTTTATG+AGG | + | chr1_1:33679497-33679516 | Msa0019390:intron | 20.0% |
| !!! | TATTTTATGAGGATTAGATT+TGG | + | chr1_1:33679508-33679527 | Msa0019390:intron | 20.0% |
| !! | GATTAATTAACTAGAACTAT+TGG | + | chr1_1:33679986-33680005 | Msa0019390:intron | 20.0% |
| !! | TTGTGTTAACATAGAAAAAA+GGG | + | chr1_1:33680529-33680548 | Msa0019390:CDS | 20.0% |
| !!! | GTATTGCTTTTGAATAAAAT+TGG | + | chr1_1:33680581-33680600 | Msa0019390:CDS | 20.0% |
| !! | TTGTTTGTATAATTAAAGTG+AGG | + | chr1_1:33681041-33681060 | Msa0019390:intron | 20.0% |
| !! | ATAATCACTAAAATGTAGAA+TGG | - | chr1_1:33681865-33681884 | None:intergenic | 20.0% |
| !! | ACTTCTAGTATTACAATTTA+TGG | + | chr1_1:33681913-33681932 | Msa0019390:intron | 20.0% |
| !!! | TTATTTTGCCGTAATTATTT+TGG | + | chr1_1:33681943-33681962 | Msa0019390:intron | 20.0% |
| !! | ATAAGAGAATTAATTAATGG+GGG | - | chr1_1:33682268-33682287 | None:intergenic | 20.0% |
| !! | ATAATTTCTGCATAAGAAAA+TGG | - | chr1_1:33682361-33682380 | None:intergenic | 20.0% |
| !!! | TAAAAGTACAGATAAAAACT+AGG | - | chr1_1:33682988-33683007 | None:intergenic | 20.0% |
| !! | TAATTACTAAAGAGAACAAT+AGG | - | chr1_1:33683142-33683161 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTACTTTCACTTT+CGG | - | chr1_1:33683699-33683718 | None:intergenic | 20.0% |
| !! | AATAGTGAAACTTCATTTAT+TGG | + | chr1_1:33683846-33683865 | Msa0019390:CDS | 20.0% |
| !! | ATAGTGAAACTTCATTTATT+GGG | + | chr1_1:33683847-33683866 | Msa0019390:CDS | 20.0% |
| !! | ACAAAATGAGAAGTTATATA+CGG | + | chr1_1:33684453-33684472 | Msa0019390:CDS | 20.0% |
| !! | ACATAAATTAGACTTATGTA+AGG | + | chr1_1:33684719-33684738 | Msa0019390:intron | 20.0% |
| !! | TTGAATTCTAAACACTATAA+AGG | - | chr1_1:33685035-33685054 | None:intergenic | 20.0% |
| ! | AAATTGAAAAGGTGATGAAA+GGG | - | chr1_1:33678935-33678954 | None:intergenic | 25.0% |
| ! | ACTTATACATAAGCTTTCTA+TGG | - | chr1_1:33679608-33679627 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAACTTG+TGG | + | chr1_1:33679650-33679669 | Msa0019390:intron | 25.0% |
| ! | CTAGATAAGTCAATCTAAAT+AGG | + | chr1_1:33679753-33679772 | Msa0019390:intron | 25.0% |
| !!! | TCAAGATTACAAGTTTTATC+GGG | - | chr1_1:33679850-33679869 | None:intergenic | 25.0% |
| !!! | CTCAAGATTACAAGTTTTAT+CGG | - | chr1_1:33679851-33679870 | None:intergenic | 25.0% |
| ! | AAAGAATAGTATTACCATAC+AGG | - | chr1_1:33680136-33680155 | None:intergenic | 25.0% |
| ! | GTTGTGTTAACATAGAAAAA+AGG | + | chr1_1:33680528-33680547 | Msa0019390:CDS | 25.0% |
| ! | TGAAAAAAATATTCCCAGAA+GGG | - | chr1_1:33680639-33680658 | None:intergenic | 25.0% |
| ! | ATGAAAAAAATATTCCCAGA+AGG | - | chr1_1:33680640-33680659 | None:intergenic | 25.0% |
| ! | TGCAAGTGTTCTTATAAATA+TGG | + | chr1_1:33680973-33680992 | Msa0019390:intron | 25.0% |
| !! | GGATGTTATCAATACTATTT+TGG | + | chr1_1:33681147-33681166 | Msa0019390:intron | 25.0% |
| !!! | TCTATTTTTAACTCCTTAAC+CGG | + | chr1_1:33681345-33681364 | Msa0019390:intron | 25.0% |
| ! | ATAATAAGAGTTATGCTAAC+CGG | - | chr1_1:33681384-33681403 | None:intergenic | 25.0% |
| ! | ATATCTTGTAAAATTGACGA+GGG | - | chr1_1:33681525-33681544 | None:intergenic | 25.0% |
| ! | TATATCTTGTAAAATTGACG+AGG | - | chr1_1:33681526-33681545 | None:intergenic | 25.0% |
| ! | TCAGTGTTATGTAATTTCTA+TGG | + | chr1_1:33681563-33681582 | Msa0019390:intron | 25.0% |
| ! | TGCATAAAGAAACAAACAAA+TGG | - | chr1_1:33681694-33681713 | None:intergenic | 25.0% |
| ! | AGACAAAGCCAAAATAATTA+CGG | - | chr1_1:33681954-33681973 | None:intergenic | 25.0% |
| !! | TCTTATTTAGGTCTTCATAT+TGG | + | chr1_1:33682282-33682301 | Msa0019390:intron | 25.0% |
| ! | AAAACATGTATAGAATCTCA+AGG | - | chr1_1:33682609-33682628 | None:intergenic | 25.0% |
| ! | GATAATAGGTTACTAGTATT+GGG | - | chr1_1:33682642-33682661 | None:intergenic | 25.0% |
| ! | AGATAATAGGTTACTAGTAT+TGG | - | chr1_1:33682643-33682662 | None:intergenic | 25.0% |
| ! | ACTCAAAAGGTAAAGATAAT+AGG | - | chr1_1:33682656-33682675 | None:intergenic | 25.0% |
| ! | CAATATATTTAGCACTCAAA+AGG | - | chr1_1:33682669-33682688 | None:intergenic | 25.0% |
| !! | TTTTTGTGGAATTGAAACTA+AGG | + | chr1_1:33682732-33682751 | Msa0019390:intron | 25.0% |
| !! | TTTTGTGGAATTGAAACTAA+GGG | + | chr1_1:33682733-33682752 | Msa0019390:intron | 25.0% |
| ! | GGTCTTTATTCTTTAATCAA+CGG | - | chr1_1:33682925-33682944 | None:intergenic | 25.0% |
| ! | TCATAAATCAAATTTCAACC+AGG | - | chr1_1:33682961-33682980 | None:intergenic | 25.0% |
| !!! | ATACATGTTTCTTTTGAAGT+TGG | + | chr1_1:33683648-33683667 | Msa0019390:intron | 25.0% |
| !!! | TTCTTTTGAAGTTGGAAATT+AGG | + | chr1_1:33683656-33683675 | Msa0019390:intron | 25.0% |
| ! | ATTTATAATTGCACTGTTTC+AGG | + | chr1_1:33683717-33683736 | Msa0019390:intron | 25.0% |
| ! | TAAAGAGTTTAACATTGATG+AGG | + | chr1_1:33683818-33683837 | Msa0019390:CDS | 25.0% |
| !! | TTAATATCCGATTTGATTGA+TGG | + | chr1_1:33684086-33684105 | Msa0019390:intron | 25.0% |
| !! | TAATATCCGATTTGATTGAT+GGG | + | chr1_1:33684087-33684106 | Msa0019390:intron | 25.0% |
| !! | CAATCAAAATCTCAGAATTT+TGG | - | chr1_1:33684145-33684164 | None:intergenic | 25.0% |
| !!! | CAAAATTCTGAGATTTTGAT+TGG | + | chr1_1:33684143-33684162 | Msa0019390:intron | 25.0% |
| ! | CTGGAAAAACAAATTGAAAA+GGG | - | chr1_1:33684302-33684321 | None:intergenic | 25.0% |
| ! | GTATACTTAATCCAAAATTG+AGG | + | chr1_1:33684482-33684501 | Msa0019390:CDS | 25.0% |
| !! | CAAAGTTGATTACTTCAAAA+AGG | + | chr1_1:33684579-33684598 | Msa0019390:CDS | 25.0% |
| ! | TAAATTAGACTTATGTAAGG+TGG | + | chr1_1:33684722-33684741 | Msa0019390:intron | 25.0% |
| GAAATTGAAAAGGTGATGAA+AGG | - | chr1_1:33678936-33678955 | None:intergenic | 30.0% | |
| !!! | TTGAAGCTTTTTAGCTTCTT+TGG | - | chr1_1:33679089-33679108 | None:intergenic | 30.0% |
| GCTAAAAAGCTTCAATTAAG+TGG | + | chr1_1:33679094-33679113 | Msa0019390:CDS | 30.0% | |
| TCAATTAAGTGGTAAGAAGA+AGG | + | chr1_1:33679105-33679124 | Msa0019390:CDS | 30.0% | |
| TTCAATTCCTGTTCCTTAAA+AGG | - | chr1_1:33679163-33679182 | None:intergenic | 30.0% | |
| ! | TTAGATTTGGTTTCTGCATT+TGG | + | chr1_1:33679521-33679540 | Msa0019390:intron | 30.0% |
| TTAACCTGATTATCCAAACA+GGG | - | chr1_1:33679547-33679566 | None:intergenic | 30.0% | |
| ATTAACCTGATTATCCAAAC+AGG | - | chr1_1:33679548-33679567 | None:intergenic | 30.0% | |
| CAGCATTTGTGAAACTATTT+GGG | - | chr1_1:33679727-33679746 | None:intergenic | 30.0% | |
| TCAGCATTTGTGAAACTATT+TGG | - | chr1_1:33679728-33679747 | None:intergenic | 30.0% | |
| !!! | GTTTTGGAAAGAAAACTAAG+TGG | - | chr1_1:33679820-33679839 | None:intergenic | 30.0% |
| CGATAAAACTTGTAATCTTG+AGG | + | chr1_1:33679849-33679868 | Msa0019390:intron | 30.0% | |
| ! | AAAGCTATTCTTTTGTGATG+CGG | + | chr1_1:33680066-33680085 | Msa0019390:intron | 30.0% |
| TAACTCCAATTCAGTTGAAA+CGG | + | chr1_1:33680260-33680279 | Msa0019390:CDS | 30.0% | |
| TTTCCATAGATAGTTCAGAT+AGG | + | chr1_1:33680420-33680439 | Msa0019390:intron | 30.0% | |
| TTCCATAGATAGTTCAGATA+GGG | + | chr1_1:33680421-33680440 | Msa0019390:intron | 30.0% | |
| TTAACATAGAAAAAAGGGTG+AGG | + | chr1_1:33680534-33680553 | Msa0019390:CDS | 30.0% | |
| AAGCAATACATGACGTTTAT+GGG | - | chr1_1:33680570-33680589 | None:intergenic | 30.0% | |
| AAAGCAATACATGACGTTTA+TGG | - | chr1_1:33680571-33680590 | None:intergenic | 30.0% | |
| AACAGCAAAAATCAAACCTA+GGG | + | chr1_1:33680772-33680791 | Msa0019390:CDS | 30.0% | |
| !!! | TGATTTTTTTAGATCTCCCT+AGG | - | chr1_1:33680791-33680810 | None:intergenic | 30.0% |
| TTGCAATTAAGTGATTGTCT+CGG | + | chr1_1:33680825-33680844 | Msa0019390:CDS | 30.0% | |
| !! | ATCAGAGATGTTACTTTATG+TGG | + | chr1_1:33681092-33681111 | Msa0019390:intron | 30.0% |
| !! | TCAGAGATGTTACTTTATGT+GGG | + | chr1_1:33681093-33681112 | Msa0019390:intron | 30.0% |
| AGGAGAAACATGAATGATAA+GGG | - | chr1_1:33681489-33681508 | None:intergenic | 30.0% | |
| AAGGAGAAACATGAATGATA+AGG | - | chr1_1:33681490-33681509 | None:intergenic | 30.0% | |
| TCTTTATGCATGCATGAATT+TGG | + | chr1_1:33681704-33681723 | Msa0019390:intron | 30.0% | |
| AATTTGGCACTTGTATGTTT+GGG | + | chr1_1:33681720-33681739 | Msa0019390:intron | 30.0% | |
| GAAGTGAAGTTACAAGAATT+GGG | - | chr1_1:33681898-33681917 | None:intergenic | 30.0% | |
| AGAAGTGAAGTTACAAGAAT+TGG | - | chr1_1:33681899-33681918 | None:intergenic | 30.0% | |
| TTTCTGCATAAGAAAATGGA+GGG | - | chr1_1:33682357-33682376 | None:intergenic | 30.0% | |
| ATTTCTGCATAAGAAAATGG+AGG | - | chr1_1:33682358-33682377 | None:intergenic | 30.0% | |
| GTATAGAATCTCAAGGTAAA+GGG | - | chr1_1:33682602-33682621 | None:intergenic | 30.0% | |
| TGTATAGAATCTCAAGGTAA+AGG | - | chr1_1:33682603-33682622 | None:intergenic | 30.0% | |
| TCTTTCAAATAAGAACTAGG+TGG | - | chr1_1:33682829-33682848 | None:intergenic | 30.0% | |
| ! | ACCTAGTTCTTATTTGAAAG+AGG | + | chr1_1:33682828-33682847 | Msa0019390:intron | 30.0% |
| ACCTCTTTCAAATAAGAACT+AGG | - | chr1_1:33682832-33682851 | None:intergenic | 30.0% | |
| AAAGAGGTTACATGAAGTTT+GGG | + | chr1_1:33682844-33682863 | Msa0019390:intron | 30.0% | |
| ! | CTATTACACTATTTTCTCTC+TGG | + | chr1_1:33683009-33683028 | Msa0019390:intron | 30.0% |
| CAATTAACTAACTAGAAAGC+AGG | - | chr1_1:33683231-33683250 | None:intergenic | 30.0% | |
| !!! | ATTTTGAAATCCTGACTTTC+AGG | + | chr1_1:33683381-33683400 | Msa0019390:intron | 30.0% |
| ! | GGAAGTCTAATCCTTTTTAT+TGG | + | chr1_1:33683412-33683431 | Msa0019390:intron | 30.0% |
| TCATCAACTGAATCAAAACT+TGG | - | chr1_1:33683503-33683522 | None:intergenic | 30.0% | |
| !! | AGAAAACTCTGAAACTATCT+TGG | - | chr1_1:33683799-33683818 | None:intergenic | 30.0% |
| ! | ACATTATAAGGAAAGTGTGT+TGG | + | chr1_1:33683992-33684011 | Msa0019390:intron | 30.0% |
| ! | AAATTGACACGCATCTATTT+TGG | + | chr1_1:33684015-33684034 | Msa0019390:intron | 30.0% |
| ! | CAAAATCTCAGAATTTTGGA+GGG | - | chr1_1:33684141-33684160 | None:intergenic | 30.0% |
| ! | TCAAAATCTCAGAATTTTGG+AGG | - | chr1_1:33684142-33684161 | None:intergenic | 30.0% |
| AACACACTACAAACTGAATA+GGG | - | chr1_1:33684255-33684274 | None:intergenic | 30.0% | |
| TAACACACTACAAACTGAAT+AGG | - | chr1_1:33684256-33684275 | None:intergenic | 30.0% | |
| CCTGGAAAAACAAATTGAAA+AGG | - | chr1_1:33684303-33684322 | None:intergenic | 30.0% | |
| !! | CCTTTTCAATTTGTTTTTCC+AGG | + | chr1_1:33684300-33684319 | Msa0019390:intron | 30.0% |
| ATCTATGGAAAGTGATAAAG+AGG | + | chr1_1:33684393-33684412 | Msa0019390:CDS | 30.0% | |
| AAATGAGAAGTTATATACGG+CGG | + | chr1_1:33684456-33684475 | Msa0019390:CDS | 30.0% | |
| AGAGAAGAAGAAAAAGAAGA+AGG | + | chr1_1:33684510-33684529 | Msa0019390:CDS | 30.0% | |
| TTACTTCAAAAAGGACACAA+TGG | + | chr1_1:33684588-33684607 | Msa0019390:CDS | 30.0% | |
| ! | CAATACAGAAACCAAGTTTT+GGG | + | chr1_1:33684828-33684847 | Msa0019390:intron | 30.0% |
| GCTTAATCCAAATTGTTGAA+GGG | - | chr1_1:33684925-33684944 | None:intergenic | 30.0% | |
| TGCTTAATCCAAATTGTTGA+AGG | - | chr1_1:33684926-33684945 | None:intergenic | 30.0% | |
| AACCCTTTCAAACCCTAAAA+TGG | + | chr1_1:33678884-33678903 | Msa0019390:exon | 35.0% | |
| !!! | CACCATTTTAGGGTTTGAAA+GGG | - | chr1_1:33678889-33678908 | None:intergenic | 35.0% |
| !!! | TCACCATTTTAGGGTTTGAA+AGG | - | chr1_1:33678890-33678909 | None:intergenic | 35.0% |
| ! | TGCTTCTCTTCACCATTTTA+GGG | - | chr1_1:33678899-33678918 | None:intergenic | 35.0% |
| ! | TTGCTTCTCTTCACCATTTT+AGG | - | chr1_1:33678900-33678919 | None:intergenic | 35.0% |
| ATCCTGGTATTCCAAATGAT+TGG | + | chr1_1:33679137-33679156 | Msa0019390:CDS | 35.0% | |
| !!! | TCCAAATGATTGGCCTTTTA+AGG | + | chr1_1:33679147-33679166 | Msa0019390:CDS | 35.0% |
| TCCTTAAAAGGCCAATCATT+TGG | - | chr1_1:33679151-33679170 | None:intergenic | 35.0% | |
| AGAAAGAAGCTCGTAAAGAA+AGG | + | chr1_1:33679230-33679249 | Msa0019390:CDS | 35.0% | |
| GAAAGAAGCTCGTAAAGAAA+GGG | + | chr1_1:33679231-33679250 | Msa0019390:CDS | 35.0% | |
| AGCTTTCTATGGTCACTTAT+AGG | - | chr1_1:33679597-33679616 | None:intergenic | 35.0% | |
| ! | TTTATCGGGACAACAAGTTT+TGG | - | chr1_1:33679836-33679855 | None:intergenic | 35.0% |
| GAACTAAGCTCAAGTTACTT+CGG | + | chr1_1:33679871-33679890 | Msa0019390:intron | 35.0% | |
| TGTTATGTGTTATGCCTGTA+TGG | + | chr1_1:33680119-33680138 | Msa0019390:intron | 35.0% | |
| ! | TCTTGTTTCAGACTCGTAAA+AGG | + | chr1_1:33680211-33680230 | Msa0019390:intron | 35.0% |
| !! | TTATTAGTCTTCGCAACAGT+AGG | - | chr1_1:33680312-33680331 | None:intergenic | 35.0% |
| ACTGTTGCGAAGACTAATAA+AGG | + | chr1_1:33680312-33680331 | Msa0019390:CDS | 35.0% | |
| AATAACCTGATCCAAATCAC+TGG | - | chr1_1:33680453-33680472 | None:intergenic | 35.0% | |
| AATATTCCCAGAAGGGAAAA+GGG | - | chr1_1:33680632-33680651 | None:intergenic | 35.0% | |
| AAATATTCCCAGAAGGGAAA+AGG | - | chr1_1:33680633-33680652 | None:intergenic | 35.0% | |
| CAACAGCAAAAATCAAACCT+AGG | + | chr1_1:33680771-33680790 | Msa0019390:CDS | 35.0% | |
| CTGGGTTAAGGAGTTATAAA+AGG | + | chr1_1:33681241-33681260 | Msa0019390:intron | 35.0% | |
| GAATTTGGCACTTGTATGTT+TGG | + | chr1_1:33681719-33681738 | Msa0019390:intron | 35.0% | |
| !! | GCATAACATGAAAAGTATCG+TGG | - | chr1_1:33681757-33681776 | None:intergenic | 35.0% |
| ! | CGATACTTTTCATGTTATGC+TGG | + | chr1_1:33681757-33681776 | Msa0019390:intron | 35.0% |
| AGACTACTCTTACCAACATT+GGG | - | chr1_1:33682019-33682038 | None:intergenic | 35.0% | |
| AAGACTACTCTTACCAACAT+TGG | - | chr1_1:33682020-33682039 | None:intergenic | 35.0% | |
| ! | GGACAAAAATGTTAAGTTGC+TGG | + | chr1_1:33682120-33682139 | Msa0019390:CDS | 35.0% |
| GAGAATTAATTAATGGGGGA+AGG | - | chr1_1:33682264-33682283 | None:intergenic | 35.0% | |
| ! | TGGAGTAATGCTACTTGAAA+TGG | + | chr1_1:33682302-33682321 | Msa0019390:intron | 35.0% |
| ! | GTAATGCTACTTGAAATGGA+TGG | + | chr1_1:33682306-33682325 | Msa0019390:intron | 35.0% |
| CAGTATTAGAGTCTAGAAGA+GGG | - | chr1_1:33682433-33682452 | None:intergenic | 35.0% | |
| TCAGTATTAGAGTCTAGAAG+AGG | - | chr1_1:33682434-33682453 | None:intergenic | 35.0% | |
| GTTATCATGATCTCAGTTGA+AGG | + | chr1_1:33682568-33682587 | Msa0019390:intron | 35.0% | |
| ! | ATAGGTTACTAGTATTGGGA+GGG | - | chr1_1:33682638-33682657 | None:intergenic | 35.0% |
| ! | AATAGGTTACTAGTATTGGG+AGG | - | chr1_1:33682639-33682658 | None:intergenic | 35.0% |
| !!! | TTACCACTGTTTGCTTTTTG+TGG | + | chr1_1:33682718-33682737 | Msa0019390:intron | 35.0% |
| ATTCCACAAAAAGCAAACAG+TGG | - | chr1_1:33682724-33682743 | None:intergenic | 35.0% | |
| !!! | AGGCTTGGCTTGATTTTTTT+GGG | - | chr1_1:33682783-33682802 | None:intergenic | 35.0% |
| GAAAGAGGTTACATGAAGTT+TGG | + | chr1_1:33682843-33682862 | Msa0019390:intron | 35.0% | |
| AAGAGGTTACATGAAGTTTG+GGG | + | chr1_1:33682845-33682864 | Msa0019390:intron | 35.0% | |
| CAACGGAACTTGAATACAAT+GGG | - | chr1_1:33682908-33682927 | None:intergenic | 35.0% | |
| TCAACGGAACTTGAATACAA+TGG | - | chr1_1:33682909-33682928 | None:intergenic | 35.0% | |
| ! | TAGAAGCACATGTAATGAGA+GGG | - | chr1_1:33683043-33683062 | None:intergenic | 35.0% |
| ! | TTAGAAGCACATGTAATGAG+AGG | - | chr1_1:33683044-33683063 | None:intergenic | 35.0% |
| AAGTCATGTCTTAGTGCTTT+AGG | - | chr1_1:33683085-33683104 | None:intergenic | 35.0% | |
| ATGGATGAAAAGATAGGATC+AGG | - | chr1_1:33683171-33683190 | None:intergenic | 35.0% | |
| ! | GATCCTATCTTTTCATCCAT+CGG | + | chr1_1:33683171-33683190 | Msa0019390:intron | 35.0% |
| AAGCAGGATCAATATTGTGA+AGG | - | chr1_1:33683215-33683234 | None:intergenic | 35.0% | |
| CACTGCATTGTCCAATAAAA+AGG | - | chr1_1:33683426-33683445 | None:intergenic | 35.0% | |
| GTTCTTCATGACTGGAATAT+AGG | + | chr1_1:33683602-33683621 | Msa0019390:CDS | 35.0% | |
| TCTTACTTTCACTTTCGGAA+AGG | - | chr1_1:33683694-33683713 | None:intergenic | 35.0% | |
| ACATGATCTAACTCAACAGT+AGG | - | chr1_1:33683882-33683901 | None:intergenic | 35.0% | |
| TTGTCTCATCAAAGATGAGA+GGG | - | chr1_1:33683923-33683942 | None:intergenic | 35.0% | |
| ATTGTCTCATCAAAGATGAG+AGG | - | chr1_1:33683924-33683943 | None:intergenic | 35.0% | |
| CTTTGATGAGACAATGTTAG+AGG | + | chr1_1:33683929-33683948 | Msa0019390:CDS | 35.0% | |
| ! | TTTTGGATGGTCTGTTTGTA+TGG | + | chr1_1:33684032-33684051 | Msa0019390:intron | 35.0% |
| TTTGCACCCATCAATCAAAT+CGG | - | chr1_1:33684096-33684115 | None:intergenic | 35.0% | |
| AGGGAGCTAAAACTAACTTA+AGG | - | chr1_1:33684122-33684141 | None:intergenic | 35.0% | |
| !! | TAGGGTCTCTTTTGATTCAA+AGG | - | chr1_1:33684237-33684256 | None:intergenic | 35.0% |
| AAGTTGGCAAAACAAGATGA+AGG | + | chr1_1:33684337-33684356 | Msa0019390:CDS | 35.0% | |
| TCATTGTCATCAACATTCTC+AGG | - | chr1_1:33684364-33684383 | None:intergenic | 35.0% | |
| !! | GAATGTTGATGACAATGATG+AGG | + | chr1_1:33684366-33684385 | Msa0019390:CDS | 35.0% |
| CAATGATGAGGATGAATCTA+TGG | + | chr1_1:33684378-33684397 | Msa0019390:CDS | 35.0% | |
| TGATAAAGAGGATGTTAGCA+AGG | + | chr1_1:33684405-33684424 | Msa0019390:CDS | 35.0% | |
| AAGTCATAATCACCATCCAT+AGG | - | chr1_1:33684559-33684578 | None:intergenic | 35.0% | |
| CCAAAACTTGGTTTCTGTAT+TGG | - | chr1_1:33684830-33684849 | None:intergenic | 35.0% | |
| ! | CCAATACAGAAACCAAGTTT+TGG | + | chr1_1:33684827-33684846 | Msa0019390:intron | 35.0% |
| TTAGTAACATATCACGCATG+AGG | + | chr1_1:33685066-33685085 | Msa0019390:three_prime_UTR | 35.0% | |
| ! | TTTAGGGTTTGAAAGGGTTG+CGG | - | chr1_1:33678883-33678902 | None:intergenic | 40.0% |
| TTGCAGAGAGTAAGAGTAAG+AGG | + | chr1_1:33679002-33679021 | Msa0019390:intron | 40.0% | |
| TGCAGAGAGTAAGAGTAAGA+GGG | + | chr1_1:33679003-33679022 | Msa0019390:intron | 40.0% | |
| AAGAAGGTTGAGAAAGATCC+TGG | + | chr1_1:33679121-33679140 | Msa0019390:CDS | 40.0% | |
| !!! | TGATTGGCCTTTTAAGGAAC+AGG | + | chr1_1:33679153-33679172 | Msa0019390:CDS | 40.0% |
| GTTTCAGACTCGTAAAAGGA+AGG | + | chr1_1:33680215-33680234 | Msa0019390:intron | 40.0% | |
| TTGGAGTTATCATCATCCAC+TGG | - | chr1_1:33680249-33680268 | None:intergenic | 40.0% | |
| AGAAGCCGTTTCAACTGAAT+TGG | - | chr1_1:33680268-33680287 | None:intergenic | 40.0% | |
| AGAGTCTGATGTCATACTAG+AGG | + | chr1_1:33680475-33680494 | Msa0019390:CDS | 40.0% | |
| TTAACACAACGAGTACCCAA+GGG | - | chr1_1:33680518-33680537 | None:intergenic | 40.0% | |
| ATATTCCCAGAAGGGAAAAG+GGG | - | chr1_1:33680631-33680650 | None:intergenic | 40.0% | |
| GAATTATGCAAGAAGCGACA+AGG | + | chr1_1:33680875-33680894 | Msa0019390:CDS | 40.0% | |
| CTTGTGATTCACATGCTTCT+TGG | + | chr1_1:33681126-33681145 | Msa0019390:intron | 40.0% | |
| AAATGCTAACTAGTTCCCCT+GGG | + | chr1_1:33681215-33681234 | Msa0019390:intron | 40.0% | |
| ACGAGGGTTTGTAGAACAAA+AGG | - | chr1_1:33681509-33681528 | None:intergenic | 40.0% | |
| GTGAAGTTACAAGAATTGGG+AGG | - | chr1_1:33681895-33681914 | None:intergenic | 40.0% | |
| CTCAAGACATCAATCACTGT+TGG | + | chr1_1:33681980-33681999 | Msa0019390:CDS | 40.0% | |
| ! | GACATCAATCACTGTTGGTT+TGG | + | chr1_1:33681985-33682004 | Msa0019390:CDS | 40.0% |
| !! | TCAATCACTGTTGGTTTGGT+TGG | + | chr1_1:33681989-33682008 | Msa0019390:CDS | 40.0% |
| GTCAAAGCAAGAGATTCGTT+TGG | + | chr1_1:33682099-33682118 | Msa0019390:CDS | 40.0% | |
| ! | TGCTACTTGAAATGGATGGT+TGG | + | chr1_1:33682310-33682329 | Msa0019390:intron | 40.0% |
| GAAAATGGAGGGTTATACAG+AGG | - | chr1_1:33682346-33682365 | None:intergenic | 40.0% | |
| ! | CCAGAAAGGAGCATAAAAGA+TGG | - | chr1_1:33682519-33682538 | None:intergenic | 40.0% |
| ! | CCATCTTTTATGCTCCTTTC+TGG | + | chr1_1:33682516-33682535 | Msa0019390:intron | 40.0% |
| CATGATCTCAGTTGAAGGAA+TGG | + | chr1_1:33682573-33682592 | Msa0019390:intron | 40.0% | |
| !!! | GGCTTGGCTTGATTTTTTTG+GGG | - | chr1_1:33682782-33682801 | None:intergenic | 40.0% |
| !!! | GAGGCTTGGCTTGATTTTTT+TGG | - | chr1_1:33682784-33682803 | None:intergenic | 40.0% |
| CAAATAAGAACTAGGTGGTG+AGG | - | chr1_1:33682824-33682843 | None:intergenic | 40.0% | |
| TCATGCCCTTACTATATCGA+TGG | - | chr1_1:33682884-33682903 | None:intergenic | 40.0% | |
| ! | TCTTAGTGCTTTAGGCATGT+GGG | - | chr1_1:33683077-33683096 | None:intergenic | 40.0% |
| CTTCCGATGGATGAAAAGAT+AGG | - | chr1_1:33683177-33683196 | None:intergenic | 40.0% | |
| GCTATGAAATGAACTTCCGA+TGG | - | chr1_1:33683190-33683209 | None:intergenic | 40.0% | |
| AAAGAGATATCAGCACCCTA+GGG | - | chr1_1:33683472-33683491 | None:intergenic | 40.0% | |
| TAAAGAGATATCAGCACCCT+AGG | - | chr1_1:33683473-33683492 | None:intergenic | 40.0% | |
| TGATGACTTCCTACAGATTG+TGG | + | chr1_1:33683517-33683536 | Msa0019390:CDS | 40.0% | |
| TAACAGTAGCCACAATCTGT+AGG | - | chr1_1:33683529-33683548 | None:intergenic | 40.0% | |
| TACAGATTGTGGCTACTGTT+AGG | + | chr1_1:33683528-33683547 | Msa0019390:CDS | 40.0% | |
| ACAGATTGTGGCTACTGTTA+GGG | + | chr1_1:33683529-33683548 | Msa0019390:CDS | 40.0% | |
| CAAGAATCGTTCTTCATGAC+TGG | + | chr1_1:33683594-33683613 | Msa0019390:CDS | 40.0% | |
| ! | ACTGGGGGCATAGTATAATA+TGG | - | chr1_1:33683750-33683769 | None:intergenic | 40.0% |
| ATTATACTATGCCCCCAGTT+AGG | + | chr1_1:33683751-33683770 | Msa0019390:CDS | 40.0% | |
| TTATACTATGCCCCCAGTTA+GGG | + | chr1_1:33683752-33683771 | Msa0019390:CDS | 40.0% | |
| !! | TGACACGCATCTATTTTGGA+TGG | + | chr1_1:33684019-33684038 | Msa0019390:intron | 40.0% |
| TCTGTTTGTATGGAGGGAAA+TGG | + | chr1_1:33684042-33684061 | Msa0019390:intron | 40.0% | |
| TTTGTATGGAGGGAAATGGA+AGG | + | chr1_1:33684046-33684065 | Msa0019390:intron | 40.0% | |
| ACTTAACTGCTTTGTCATCC+TGG | - | chr1_1:33684321-33684340 | None:intergenic | 40.0% | |
| GGATGACAAAGCAGTTAAGT+TGG | + | chr1_1:33684321-33684340 | Msa0019390:intron | 40.0% | |
| AGAGGATGTTAGCAAGGAAA+AGG | + | chr1_1:33684411-33684430 | Msa0019390:CDS | 40.0% | |
| TGATGAACAAGTCAACACTG+AGG | + | chr1_1:33684651-33684670 | Msa0019390:CDS | 40.0% | |
| !! | GTTGAGGTTGATGCATGATT+TGG | + | chr1_1:33684688-33684707 | Msa0019390:exon | 40.0% |
| !!! | ACAGAAACCAAGTTTTGGGT+AGG | + | chr1_1:33684832-33684851 | Msa0019390:intron | 40.0% |
| TTCTTGACCTACCCAAAACT+TGG | - | chr1_1:33684842-33684861 | None:intergenic | 40.0% | |
| TTTGGGTAGGTCAAGAAATG+AGG | + | chr1_1:33684845-33684864 | Msa0019390:three_prime_UTR | 40.0% | |
| CTACTGTCCCTTCAACAATT+TGG | + | chr1_1:33684915-33684934 | Msa0019390:three_prime_UTR | 40.0% | |
| ! | GGCCAATCATTTGGAATACC+AGG | - | chr1_1:33679142-33679161 | None:intergenic | 45.0% |
| AGAACGTGCTCTTGCTGAAT+TGG | + | chr1_1:33679201-33679220 | Msa0019390:CDS | 45.0% | |
| TTTCTGCATTTGGCCCTGTT+TGG | + | chr1_1:33679531-33679550 | Msa0019390:intron | 45.0% | |
| TTGGCCCTGTTTGGATAATC+AGG | + | chr1_1:33679540-33679559 | Msa0019390:intron | 45.0% | |
| GACAGTCTACTCAGAGATGT+AGG | + | chr1_1:33680088-33680107 | Msa0019390:intron | 45.0% | |
| TCAGACTCGTAAAAGGAAGG+CGG | + | chr1_1:33680218-33680237 | Msa0019390:intron | 45.0% | |
| CGCAACAGTAGGAACAGTTT+CGG | - | chr1_1:33680301-33680320 | None:intergenic | 45.0% | |
| GGCCCTATCTGAACTATCTA+TGG | - | chr1_1:33680426-33680445 | None:intergenic | 45.0% | |
| CTGATCCAAATCACTGGCAA+AGG | - | chr1_1:33680447-33680466 | None:intergenic | 45.0% | |
| ! | CTTTGCCAGTGATTTGGATC+AGG | + | chr1_1:33680445-33680464 | Msa0019390:CDS | 45.0% |
| GTTAACACAACGAGTACCCA+AGG | - | chr1_1:33680519-33680538 | None:intergenic | 45.0% | |
| GAAAAAAGGGTGAGGAAAGC+AGG | + | chr1_1:33680542-33680561 | Msa0019390:CDS | 45.0% | |
| GAAGGGAAAAGGGGAGAAAA+AGG | - | chr1_1:33680622-33680641 | None:intergenic | 45.0% | |
| ! | TTTTCTCCCCTTTTCCCTTC+TGG | + | chr1_1:33680622-33680641 | Msa0019390:intron | 45.0% |
| ! | TTTCTCCCCTTTTCCCTTCT+GGG | + | chr1_1:33680623-33680642 | Msa0019390:intron | 45.0% |
| ! | ACTTCTCAACTGACTCTCGA+GGG | - | chr1_1:33680698-33680717 | None:intergenic | 45.0% |
| CAGTAGGGAATTCTTCTCGA+AGG | - | chr1_1:33680731-33680750 | None:intergenic | 45.0% | |
| TGCACTTGAAAGCGACAGTA+GGG | - | chr1_1:33680746-33680765 | None:intergenic | 45.0% | |
| GAAATGCTAACTAGTTCCCC+TGG | + | chr1_1:33681214-33681233 | Msa0019390:intron | 45.0% | |
| AATGCTAACTAGTTCCCCTG+GGG | + | chr1_1:33681216-33681235 | Msa0019390:intron | 45.0% | |
| GGAGATGACTTCAAGTACCT+GGG | - | chr1_1:33682243-33682262 | None:intergenic | 45.0% | |
| AGGAGATGACTTCAAGTACC+TGG | - | chr1_1:33682244-33682263 | None:intergenic | 45.0% | |
| !! | GCTCTAGAACATGACCAGAA+AGG | - | chr1_1:33682533-33682552 | None:intergenic | 45.0% |
| GGTTAAAGGCAGCTAAATCG+AGG | - | chr1_1:33682803-33682822 | None:intergenic | 45.0% | |
| GAACTAGGTGGTGAGGTTAA+AGG | - | chr1_1:33682817-33682836 | None:intergenic | 45.0% | |
| ! | AGACCTTGATATGAAGTGCC+TGG | + | chr1_1:33682940-33682959 | Msa0019390:intron | 45.0% |
| CAACCAGGCACTTCATATCA+AGG | - | chr1_1:33682946-33682965 | None:intergenic | 45.0% | |
| ! | CTTAGTGCTTTAGGCATGTG+GGG | - | chr1_1:33683076-33683095 | None:intergenic | 45.0% |
| ! | GTCTTAGTGCTTTAGGCATG+TGG | - | chr1_1:33683078-33683097 | None:intergenic | 45.0% |
| TCCTGACTTTCAGGCTCTAT+TGG | + | chr1_1:33683390-33683409 | Msa0019390:intron | 45.0% | |
| CCTGACTTTCAGGCTCTATT+GGG | + | chr1_1:33683391-33683410 | Msa0019390:intron | 45.0% | |
| AAGAGATATCAGCACCCTAG+GGG | - | chr1_1:33683471-33683490 | None:intergenic | 45.0% | |
| CAGATTGTGGCTACTGTTAG+GGG | + | chr1_1:33683530-33683549 | Msa0019390:CDS | 45.0% | |
| TTCTCCTTGATCCCTAACTG+GGG | - | chr1_1:33683766-33683785 | None:intergenic | 45.0% | |
| GTTCTCCTTGATCCCTAACT+GGG | - | chr1_1:33683767-33683786 | None:intergenic | 45.0% | |
| GAAACTATCTTGGCCTCTGA+AGG | - | chr1_1:33683789-33683808 | None:intergenic | 45.0% | |
| AAGATGAGAGGGCAACTTGA+AGG | - | chr1_1:33683912-33683931 | None:intergenic | 45.0% | |
| TGGATGGTCTGTTTGTATGG+AGG | + | chr1_1:33684035-33684054 | Msa0019390:intron | 45.0% | |
| GGATGGTCTGTTTGTATGGA+GGG | + | chr1_1:33684036-33684055 | Msa0019390:intron | 45.0% | |
| TATGGAGGGAAATGGAAGGT+GGG | + | chr1_1:33684050-33684069 | Msa0019390:intron | 45.0% | |
| TGAGAAGTTATATACGGCGG+AGG | + | chr1_1:33684459-33684478 | Msa0019390:CDS | 45.0% | |
| GAGAAGTTATATACGGCGGA+GGG | + | chr1_1:33684460-33684479 | Msa0019390:CDS | 45.0% | |
| ! | TTCTCTGCTCGCCTCAATTT+TGG | - | chr1_1:33684496-33684515 | None:intergenic | 45.0% |
| ATCCATAGGATCAGATGAGC+TGG | - | chr1_1:33684545-33684564 | None:intergenic | 45.0% | |
| AGCTCATCTGATCCTATGGA+TGG | + | chr1_1:33684544-33684563 | Msa0019390:CDS | 45.0% | |
| AAGGACACAATGGATGCTGA+CGG | + | chr1_1:33684598-33684617 | Msa0019390:CDS | 45.0% | |
| TCAACCTCAACACCAGACAT+GGG | - | chr1_1:33684679-33684698 | None:intergenic | 45.0% | |
| ATCAACCTCAACACCAGACA+TGG | - | chr1_1:33684680-33684699 | None:intergenic | 45.0% | |
| AACATATCACGCATGAGGTC+AGG | + | chr1_1:33685071-33685090 | Msa0019390:three_prime_UTR | 45.0% | |
| !!! | TTTTTTATGTTTTTTTTTAA+TGG | + | chr1_1:33679259-33679278 | Msa0019390:intron | 5.0% |
| !!! | AGATTTTTTTTTTTTTTTAA+TGG | + | chr1_1:33679409-33679428 | Msa0019390:intron | 5.0% |
| CAGACTCGTAAAAGGAAGGC+GGG | + | chr1_1:33680219-33680238 | Msa0019390:intron | 50.0% | |
| AGACTCGTAAAAGGAAGGCG+GGG | + | chr1_1:33680220-33680239 | Msa0019390:intron | 50.0% | |
| TAGGGCCTTTGCCAGTGATT+TGG | + | chr1_1:33680439-33680458 | Msa0019390:CDS | 50.0% | |
| TACTAGAGGTCCTTGATGCC+CGG | + | chr1_1:33680489-33680508 | Msa0019390:CDS | 50.0% | |
| ! | CACTTCTCAACTGACTCTCG+AGG | - | chr1_1:33680699-33680718 | None:intergenic | 50.0% |
| CTCGAGAGTCAGTTGAGAAG+TGG | + | chr1_1:33680697-33680716 | Msa0019390:CDS | 50.0% | |
| CTGCACTTGAAAGCGACAGT+AGG | - | chr1_1:33680747-33680766 | None:intergenic | 50.0% | |
| TATGCTAACCGGTGCCTCAT+GGG | - | chr1_1:33681373-33681392 | None:intergenic | 50.0% | |
| TTATGCTAACCGGTGCCTCA+TGG | - | chr1_1:33681374-33681393 | None:intergenic | 50.0% | |
| TTGGTTGGACTGCCCAATGT+TGG | + | chr1_1:33682004-33682023 | Msa0019390:CDS | 50.0% | |
| !! | TAGCACTGACATCGACAGCA+TGG | - | chr1_1:33682063-33682082 | None:intergenic | 50.0% |
| TCGATGTCAGTGCTAGTGCT+GGG | + | chr1_1:33682068-33682087 | Msa0019390:CDS | 50.0% | |
| ! | GTTAAGTTGCTGGATTGCCC+TGG | + | chr1_1:33682130-33682149 | Msa0019390:CDS | 50.0% |
| AGTCCAGCATGACAACACCA+GGG | - | chr1_1:33682150-33682169 | None:intergenic | 50.0% | |
| TTAGCTGATCCAGTTAGCCC+AGG | + | chr1_1:33682223-33682242 | Msa0019390:CDS | 50.0% | |
| CTTCAAGTACCTGGGCTAAC+TGG | - | chr1_1:33682235-33682254 | None:intergenic | 50.0% | |
| AAGGCAGCTAAATCGAGGCT+TGG | - | chr1_1:33682798-33682817 | None:intergenic | 50.0% | |
| CCCAATAGAGCCTGAAAGTC+AGG | - | chr1_1:33683394-33683413 | None:intergenic | 50.0% | |
| AGAGATATCAGCACCCTAGG+GGG | - | chr1_1:33683470-33683489 | None:intergenic | 50.0% | |
| TGTTAGGGGCAAGCTCAAGA+AGG | + | chr1_1:33683544-33683563 | Msa0019390:CDS | 50.0% | |
| GTTAGGGGCAAGCTCAAGAA+GGG | + | chr1_1:33683545-33683564 | Msa0019390:CDS | 50.0% | |
| TCTCCTTGATCCCTAACTGG+GGG | - | chr1_1:33683765-33683784 | None:intergenic | 50.0% | |
| GGTTCTCCTTGATCCCTAAC+TGG | - | chr1_1:33683768-33683787 | None:intergenic | 50.0% | |
| GGATCAAGGAGAACCTTCAG+AGG | + | chr1_1:33683773-33683792 | Msa0019390:CDS | 50.0% | |
| GTATGGAGGGAAATGGAAGG+TGG | + | chr1_1:33684049-33684068 | Msa0019390:intron | 50.0% | |
| AGCCAGCTCATCTGATCCTA+TGG | + | chr1_1:33684540-33684559 | Msa0019390:CDS | 50.0% | |
| AGGACACAATGGATGCTGAC+GGG | + | chr1_1:33684599-33684618 | Msa0019390:CDS | 50.0% | |
| AACACTGAGGTTCCCATGTC+TGG | + | chr1_1:33684664-33684683 | Msa0019390:CDS | 50.0% | |
| ACTAGAGGTCCTTGATGCCC+GGG | + | chr1_1:33680490-33680509 | Msa0019390:CDS | 55.0% | |
| AACGAGTACCCAAGGGATCC+CGG | - | chr1_1:33680511-33680530 | None:intergenic | 55.0% | |
| GTCGATGTCAGTGCTAGTGC+TGG | + | chr1_1:33682067-33682086 | Msa0019390:CDS | 55.0% | |
| !! | TTGCCCTGGTGTTGTCATGC+TGG | + | chr1_1:33682144-33682163 | Msa0019390:CDS | 55.0% |
| GAGTCCAGCATGACAACACC+AGG | - | chr1_1:33682151-33682170 | None:intergenic | 55.0% | |
| TTCTCAAGCTCTGTCCCCCT+AGG | + | chr1_1:33683453-33683472 | Msa0019390:CDS | 55.0% | |
| TCTCAAGCTCTGTCCCCCTA+GGG | + | chr1_1:33683454-33683473 | Msa0019390:CDS | 55.0% | |
| ATGCCCCCAGTTAGGGATCA+AGG | + | chr1_1:33683759-33683778 | Msa0019390:CDS | 55.0% | |
| ATGGATGCTGACGGGAGTGA+TGG | + | chr1_1:33684607-33684626 | Msa0019390:CDS | 55.0% | |
| ! | GATGGTGGTGACGACAACGA+TGG | + | chr1_1:33684625-33684644 | Msa0019390:CDS | 55.0% |
| ! | GGTTCCCATGTCTGGTGTTG+AGG | + | chr1_1:33684672-33684691 | Msa0019390:CDS | 55.0% |
| CTTGATGCCCGGGATCCCTT+GGG | + | chr1_1:33680500-33680519 | Msa0019390:CDS | 60.0% | |
| ACGAGTACCCAAGGGATCCC+GGG | - | chr1_1:33680510-33680529 | None:intergenic | 60.0% | |
| AACTAGTTCCCCTGGGGCAC+TGG | + | chr1_1:33681222-33681241 | Msa0019390:intron | 60.0% | |
| ! | ACTAGTTCCCCTGGGGCACT+GGG | + | chr1_1:33681223-33681242 | Msa0019390:intron | 60.0% |
| TCCTTAACCCAGTGCCCCAG+GGG | - | chr1_1:33681233-33681252 | None:intergenic | 60.0% | |
| CTCCTTAACCCAGTGCCCCA+GGG | - | chr1_1:33681234-33681253 | None:intergenic | 60.0% | |
| ACTCCTTAACCCAGTGCCCC+AGG | - | chr1_1:33681235-33681254 | None:intergenic | 60.0% | |
| CTCCTTAACCGGTGCCCATG+AGG | + | chr1_1:33681356-33681375 | Msa0019390:intron | 60.0% | |
| !! | TGCCTCATGGGCACCGGTTA+AGG | - | chr1_1:33681361-33681380 | None:intergenic | 60.0% |
| ! | GTGCTAGTGCTGGGTCGACA+AGG | + | chr1_1:33682077-33682096 | Msa0019390:CDS | 60.0% |
| AGGGGCAAGCTCAAGAAGGG+TGG | + | chr1_1:33683548-33683567 | Msa0019390:CDS | 60.0% | |
| GATGCTGACGGGAGTGATGG+TGG | + | chr1_1:33684610-33684629 | Msa0019390:CDS | 60.0% | |
| AAGGAAGGCGGGGTTGCCAG+TGG | + | chr1_1:33680230-33680249 | Msa0019390:CDS | 65.0% | |
| CCAAGGGATCCCGGGCATCA+AGG | - | chr1_1:33680502-33680521 | None:intergenic | 65.0% | |
| CCTTGATGCCCGGGATCCCT+TGG | + | chr1_1:33680499-33680518 | Msa0019390:CDS | 65.0% | |
| !! | TCCCCTGGGGCACTGGGTTA+AGG | + | chr1_1:33681229-33681248 | Msa0019390:intron | 65.0% |
| AACCGGTGCCCATGAGGCAC+CGG | + | chr1_1:33681362-33681381 | Msa0019390:intron | 65.0% | |
| AACCGGTGCCTCATGGGCAC+CGG | - | chr1_1:33681367-33681386 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 33678879 | 33685097 | 33678879 | ID=Msa0019390;Name=Msa0019390 |
| chr1_1 | mRNA | 33678879 | 33685097 | 33678879 | ID=Msa0019390-mRNA-1;Parent=Msa0019390;Name=Msa0019390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=24|1|1|1|0.88|0.8|10|292|599 |
| chr1_1 | exon | 33678879 | 33678921 | 33678879 | ID=Msa0019390-mRNA-1:exon:10697;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33679008 | 33679252 | 33679008 | ID=Msa0019390-mRNA-1:exon:10698;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33680222 | 33680333 | 33680222 | ID=Msa0019390-mRNA-1:exon:10699;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33680429 | 33680602 | 33680429 | ID=Msa0019390-mRNA-1:exon:10700;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33680688 | 33680896 | 33680688 | ID=Msa0019390-mRNA-1:exon:10701;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33681980 | 33682244 | 33681980 | ID=Msa0019390-mRNA-1:exon:10702;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33683444 | 33683623 | 33683444 | ID=Msa0019390-mRNA-1:exon:10703;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33683739 | 33683950 | 33683739 | ID=Msa0019390-mRNA-1:exon:10704;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33684322 | 33684735 | 33684322 | ID=Msa0019390-mRNA-1:exon:10705;Parent=Msa0019390-mRNA-1 |
| chr1_1 | exon | 33684836 | 33685097 | 33684836 | ID=Msa0019390-mRNA-1:exon:10706;Parent=Msa0019390-mRNA-1 |
| chr1_1 | five_prime_UTR | 33678879 | 33678902 | 33678879 | ID=Msa0019390-mRNA-1:five_prime_utr;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33678903 | 33678921 | 33678903 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33679008 | 33679252 | 33679008 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33680222 | 33680333 | 33680222 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33680429 | 33680602 | 33680429 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33680688 | 33680896 | 33680688 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33681980 | 33682244 | 33681980 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33683444 | 33683623 | 33683444 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33683739 | 33683950 | 33683739 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | CDS | 33684322 | 33684705 | 33684322 | ID=Msa0019390-mRNA-1:cds;Parent=Msa0019390-mRNA-1 |
| chr1_1 | three_prime_UTR | 33684706 | 33684735 | 33684706 | ID=Msa0019390-mRNA-1:three_prime_utr;Parent=Msa0019390-mRNA-1 |
| chr1_1 | three_prime_UTR | 33684836 | 33685097 | 33684836 | ID=Msa0019390-mRNA-1:three_prime_utr;Parent=Msa0019390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
