AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253970 MtrunA17_Chr8g0370821 95.679 324 10 1 1 324 12 331 0.0 637
Msa1253970 MtrunA17_Chr8g0370851 77.090 323 69 1 2 324 3 320 0.0 509
Msa1253970 MtrunA17_Chr8g0370831 81.967 305 40 2 20 324 20 309 6.22e-175 486
Msa1253970 MtrunA17_Chr3g0145981 62.037 324 106 2 1 323 24 331 6.53e-148 420
Msa1253970 MtrunA17_Chr7g0270841 51.653 242 115 1 84 323 36 277 1.01e-90 272
Msa1253970 MtrunA17_Chr2g0329791 38.318 321 143 11 1 317 13 282 2.14e-63 202
Msa1253970 MtrunA17_Chr2g0329781 38.816 304 136 10 18 317 6 263 1.77e-59 191
Msa1253970 MtrunA17_Chr7g0221751 40.083 242 134 4 93 323 69 310 3.30e-55 182
Msa1253970 MtrunA17_Chr1g0206111 38.843 242 137 4 93 323 72 313 2.01e-53 177
Msa1253970 MtrunA17_Chr2g0294721 38.272 243 138 5 93 323 65 307 1.71e-52 175
Msa1253970 MtrunA17_Chr7g0274181 56.604 53 23 0 10 62 6 58 6.83e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253970 AT3G12500.1 65.574 305 93 3 22 324 33 327 8.67e-141 401
Msa1253970 AT4G01700.1 54.733 243 108 1 84 324 38 280 8.09e-100 295
Msa1253970 AT1G02360.1 52.675 243 113 1 84 324 30 272 4.95e-95 283
Msa1253970 AT1G02360.2 52.675 243 113 1 84 324 76 318 1.10e-94 284
Msa1253970 AT1G02360.3 52.675 243 113 1 84 324 82 324 1.24e-94 284
Msa1253970 AT2G43620.1 38.941 321 135 13 9 317 12 283 7.26e-62 199
Msa1253970 AT2G43610.1 39.375 320 133 14 9 317 12 281 1.32e-60 195
Msa1253970 AT3G54420.1 36.164 318 147 8 3 317 9 273 1.30e-59 192
Msa1253970 AT2G43590.1 36.964 303 128 11 19 317 21 264 1.19e-56 184
Msa1253970 AT1G05850.1 37.603 242 140 4 93 323 69 310 1.87e-55 183
Msa1253970 AT1G05850.2 37.603 242 140 4 93 323 69 310 1.87e-55 183
Msa1253970 AT2G43570.1 35.647 317 139 10 9 317 18 277 9.77e-53 175
Msa1253970 AT3G16920.1 36.508 252 148 5 84 323 68 319 6.76e-52 174
Msa1253970 AT3G16920.2 36.508 252 148 5 84 323 92 343 1.09e-51 174
Msa1253970 AT2G43580.1 33.681 288 136 10 34 317 29 265 1.96e-45 155
Msa1253970 AT2G43600.1 32.407 324 159 14 1 317 3 273 8.50e-39 139
Msa1253970 AT1G56680.1 31.546 317 161 13 9 317 12 280 1.37e-38 138
Msa1253970 AT2G43600.2 32.407 324 159 14 1 317 24 294 1.94e-38 138
Msa1253970 AT1G56680.2 31.861 317 160 13 9 317 35 303 2.45e-38 138
Msa1253970 AT3G47540.1 27.642 246 119 11 77 317 23 214 7.09e-20 86.7
Msa1253970 AT3G47540.2 26.016 246 117 11 77 314 23 211 1.73e-16 78.6

Find 118 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGTATATATTTAAATTT+AGG 0.149735 8_2:-51856920 None:intergenic
TAAAAGGTATTGTCAAATAT+TGG 0.173231 8_2:+51856586 Msa1253970:CDS
GTTTATTAAATCTTCATTAA+TGG 0.182525 8_2:-51856321 None:intergenic
GGGCTATGTTGTAGCAAATT+TGG 0.190123 8_2:+51852379 Msa1253970:CDS
AGTGAACCCCGGTGATAATT+TGG 0.206260 8_2:+51856610 Msa1253970:CDS
GGTGTTGGTGTTGGTGTTGA+TGG 0.257038 8_2:-51852475 None:intergenic
AATATAAAGTATAATAATAA+AGG 0.286460 8_2:+51856686 Msa1253970:three_prime_UTR
TCAAGACAGCTATATGGTTT+TGG 0.289257 8_2:+51856381 Msa1253970:CDS
TCAGCTGCTGACAGCTCAGC+AGG 0.291069 8_2:+51856464 Msa1253970:CDS
AAAAGGTATTGTCAAATATT+GGG 0.316123 8_2:+51856587 Msa1253970:CDS
CCGACCCGATCCTCGACTTT+AGG 0.318865 8_2:-51856557 None:intergenic
GAGCCCACCATTGATTATAT+TGG 0.320885 8_2:-51856513 None:intergenic
TTGCTACAACATAGCCCATT+TGG 0.356076 8_2:-51852373 None:intergenic
ATTGGTGATCACGCCGTATC+CGG 0.356788 8_2:-51856495 None:intergenic
GTTCACAGCAATTACAATTA+CGG 0.372870 8_2:+51856284 Msa1253970:intron
TCAAGCCATGATGTGATTAC+TGG 0.373764 8_2:+51856428 Msa1253970:CDS
TATCATTCAAGACAGCTATA+TGG 0.380021 8_2:+51856375 Msa1253970:CDS
TCTTACTGAGTGAGTTGAAT+TGG 0.382364 8_2:-51854822 None:intergenic
TCGCTTAGGCAAATGGCCTT+TGG 0.383815 8_2:-51856643 None:intergenic
TGCTGACAGCTCAGCAGGGC+GGG 0.391094 8_2:+51856469 Msa1253970:CDS
AATGGAGCTCTTTGTCCAAA+TGG 0.398942 8_2:+51852358 Msa1253970:CDS
TTGATGGCTTGTTTGCTTGA+GGG 0.404442 8_2:-51856409 None:intergenic
AAGCAGCAAGTTCCTTCTTA+CGG 0.405236 8_2:-51852672 None:intergenic
AGCAGCAAGTTCCTTCTTAC+GGG 0.405858 8_2:-51852671 None:intergenic
GTAATCACATCATGGCTTGA+TGG 0.406185 8_2:-51856425 None:intergenic
AAGCAATATCCCCACGCATA+TGG 0.409090 8_2:-51854714 None:intergenic
AATCTTCTTGCTAAATAAAA+CGG 0.414743 8_2:+51856740 Msa1253970:three_prime_UTR
AGCTCAGCAGGGCGGGTCCC+CGG 0.425346 8_2:+51856476 Msa1253970:CDS
TTGGTGATCACGCCGTATCC+GGG 0.425903 8_2:-51856494 None:intergenic
CTTGATGGCTTGTTTGCTTG+AGG 0.431719 8_2:-51856410 None:intergenic
TCTCCACCACCACCTGTACT+AGG 0.439639 8_2:-51852496 None:intergenic
TGGCGAATATAAACCTATCT+TGG 0.442917 8_2:+51852272 Msa1253970:CDS
GGTGTTGATGGTGTCGGTGT+TGG 0.447435 8_2:-51852463 None:intergenic
CGGGTGTACAAAAGTCTCCT+TGG 0.447763 8_2:-51854755 None:intergenic
TGATGGCTTGTTTGCTTGAG+GGG 0.449557 8_2:-51856408 None:intergenic
GCTCCTGGTAAAAGATACTA+TGG 0.449925 8_2:+51854792 Msa1253970:CDS
CTGTCTTGAATGATACAGTT+GGG 0.458496 8_2:-51856367 None:intergenic
AGGAGCACATGGCCAATCTC+CGG 0.459259 8_2:-51854775 None:intergenic
TTTAATGGATTTGGTACCAC+TGG 0.465473 8_2:+51852637 Msa1253970:CDS
CAGTTGGGTTTGTGGAGACT+AGG 0.466628 8_2:-51856352 None:intergenic
ATATAAAGTATAATAATAAA+GGG 0.467760 8_2:+51856687 Msa1253970:three_prime_UTR
GGGTTTGTGGAGACTAGGTC+CGG 0.468156 8_2:-51856347 None:intergenic
TCAATGGTGGGCTCGAATGC+GGG 0.469876 8_2:+51856522 Msa1253970:CDS
GCTGAGCTGTCAGCAGCTGA+TGG 0.470111 8_2:-51856461 None:intergenic
AGGTACTTCGCTTAGGCAAA+TGG 0.472357 8_2:-51856650 None:intergenic
AACATAGTATCAACCAAGAT+AGG 0.474372 8_2:-51852285 None:intergenic
TGAAGATTTAATAAACAATC+CGG 0.474979 8_2:+51856328 Msa1253970:CDS
ACAGGTGGTGGTGGAGATGT+TGG 0.475782 8_2:+51852502 Msa1253970:CDS
GGATCCTAAAGTCGAGGATC+GGG 0.481097 8_2:+51856553 Msa1253970:CDS
CAATGTGGTAGTCAAGCTAA+TGG 0.481274 8_2:+51852340 Msa1253970:CDS
GAATGATACAGTTGGGTTTG+TGG 0.486901 8_2:-51856360 None:intergenic
CCCCACGCATATGGACCGTC+TGG 0.489862 8_2:-51854705 None:intergenic
CGAAATGATCAGCGTTGTGC+TGG 0.490425 8_2:+51852568 Msa1253970:CDS
GCTCGAATGCGGGAAAGGTC+AGG 0.492380 8_2:+51856532 Msa1253970:CDS
ATGGAGCTCTTTGTCCAAAT+GGG 0.497777 8_2:+51852359 Msa1253970:CDS
GGGTGTACAAAAGTCTCCTT+GGG 0.500306 8_2:-51854754 None:intergenic
TTATATTACAACATTAACAT+AGG 0.506414 8_2:-51856670 None:intergenic
GGAGCACATGGCCAATCTCC+GGG 0.508453 8_2:-51854774 None:intergenic
TATGGACCGTCTGGTGCACT+TGG 0.509398 8_2:-51854696 None:intergenic
GGAGATTGGCCATGTGCTCC+TGG 0.516012 8_2:+51854777 Msa1253970:CDS
ATATTGCTTTGTCACCGAAA+AGG 0.520899 8_2:+51854728 Msa1253970:CDS
GTTACAATCCAAATTATCAC+CGG 0.522554 8_2:-51856618 None:intergenic
ATCTTCCAGTAATCACATCA+TGG 0.525180 8_2:-51856433 None:intergenic
TTAACATAGGTACTTCGCTT+AGG 0.525544 8_2:-51856657 None:intergenic
GGTGGGCTCGAATGCGGGAA+AGG 0.528882 8_2:+51856527 Msa1253970:CDS
ATTTGGATTGTAACAACCAA+AGG 0.532242 8_2:+51856627 Msa1253970:CDS
GGTGTTGGTGTTGATGGTGT+CGG 0.534137 8_2:-51852469 None:intergenic
ATTTGATCAAACAAAGATGA+TGG 0.537556 8_2:-51852535 None:intergenic
GTGATCACCAATATAATCAA+TGG 0.543952 8_2:+51856506 Msa1253970:CDS
ATCAATGGTGGGCTCGAATG+CGG 0.544768 8_2:+51856521 Msa1253970:CDS
CACCAGACGGTCCATATGCG+TGG 0.545072 8_2:+51854703 Msa1253970:CDS
TGATGATGCCACCCGTAAGA+AGG 0.549932 8_2:+51852660 Msa1253970:CDS
GCTGTCTTGAATGATACAGT+TGG 0.551346 8_2:-51856368 None:intergenic
CCACCACCTGTACTAGGTGT+TGG 0.552714 8_2:-51852490 None:intergenic
AGGATCCTAAAGTCGAGGAT+CGG 0.553009 8_2:+51856552 Msa1253970:CDS
ATGATGTGATTACTGGAAGA+TGG 0.555867 8_2:+51856435 Msa1253970:CDS
ACTGATCAATACTGTGGAGC+TGG 0.559980 8_2:+51852415 Msa1253970:CDS
ATCAGGCACGGATCTAGTGT+GGG 0.565151 8_2:+51856844 Msa1253970:three_prime_UTR
GATCAGCGTTGTGCTGGTCA+TGG 0.565496 8_2:+51852574 Msa1253970:CDS
ATCACCAATATAATCAATGG+TGG 0.573973 8_2:+51856509 Msa1253970:CDS
AATTACAATTACGGTCAAGC+GGG 0.575378 8_2:+51856293 Msa1253970:CDS
CGTGCAGGTACGATACGATC+AGG 0.579166 8_2:+51856827 Msa1253970:three_prime_UTR
ACACCTAGTACAGGTGGTGG+TGG 0.583434 8_2:+51852493 Msa1253970:CDS
AGCAAGTTCCTTCTTACGGG+TGG 0.585203 8_2:-51852668 None:intergenic
CTGCTGACAGCTCAGCAGGG+CGG 0.585439 8_2:+51856468 Msa1253970:CDS
CAAATATTGGGAGTGAACCC+CGG 0.585803 8_2:+51856599 Msa1253970:CDS
ACCAGACGGTCCATATGCGT+GGG 0.586591 8_2:+51854704 Msa1253970:CDS
CAGCTGCTGACAGCTCAGCA+GGG 0.590641 8_2:+51856465 Msa1253970:CDS
GATCAGGCACGGATCTAGTG+TGG 0.596462 8_2:+51856843 Msa1253970:three_prime_UTR
TTACAATCCAAATTATCACC+GGG 0.600890 8_2:-51856617 None:intergenic
GGTAAAAGATACTATGGCAG+AGG 0.603766 8_2:+51854798 Msa1253970:CDS
CCTGTACTAGGTGTTGGTGT+TGG 0.607097 8_2:-51852484 None:intergenic
CAATTACAATTACGGTCAAG+CGG 0.608754 8_2:+51856292 Msa1253970:CDS
CCAACACCAACACCTAGTAC+AGG 0.616439 8_2:+51852484 Msa1253970:CDS
AATACACGTGTGGAGGCAAG+TGG 0.617596 8_2:-51856887 None:intergenic
CAAACTTCTCATGAAACCAC+TGG 0.618506 8_2:+51852703 Msa1253970:CDS
TGGTGATCACGCCGTATCCG+GGG 0.619248 8_2:-51856493 None:intergenic
TCAGGCACGGATCTAGTGTG+GGG 0.619785 8_2:+51856845 Msa1253970:three_prime_UTR
CAATAATATTATATAAAGAG+AGG 0.621357 8_2:-51856948 None:intergenic
AAAATACAATACACGTGTGG+AGG 0.627022 8_2:-51856894 None:intergenic
CCTAAAGTCGAGGATCGGGT+CGG 0.630158 8_2:+51856557 Msa1253970:CDS
CCAACACCTAGTACAGGTGG+TGG 0.640055 8_2:+51852490 Msa1253970:CDS
AAATCCATTAAAAGATCTAG+CGG 0.646204 8_2:-51852626 None:intergenic
GTCACCGAAAAGGATGCCCA+AGG 0.648696 8_2:+51854738 Msa1253970:CDS
TTTATGGACATGCAGGAGGG+TGG 0.652535 8_2:+51854673 Msa1253970:intron
GTGTTGGAGAAGATTTACAT+TGG 0.657553 8_2:-51852447 None:intergenic
AGGTCAGGATCCTAAAGTCG+AGG 0.659514 8_2:+51856547 Msa1253970:CDS
GGGTGGCCAAGTGCACCAGA+CGG 0.665375 8_2:+51854690 Msa1253970:CDS
TCACCAATATAATCAATGGT+GGG 0.665594 8_2:+51856510 Msa1253970:CDS
ACACCAACACCTAGTACAGG+TGG 0.675313 8_2:+51852487 Msa1253970:CDS
AGGTACGATACGATCAGGCA+CGG 0.687649 8_2:+51856832 Msa1253970:three_prime_UTR
ACGGGTGGCATCATCACCAG+TGG 0.693098 8_2:-51852653 None:intergenic
CAGGCACGGATCTAGTGTGG+GGG 0.693617 8_2:+51856846 Msa1253970:three_prime_UTR
ATACACGTGTGGAGGCAAGT+GGG 0.725878 8_2:-51856886 None:intergenic
TACAATCCAAATTATCACCG+GGG 0.731031 8_2:-51856616 None:intergenic
GGTAGCACTGATCAATACTG+TGG 0.734247 8_2:+51852409 Msa1253970:CDS
GTAGCTAAAGCAGAACAATG+TGG 0.744595 8_2:+51852325 Msa1253970:CDS
GGCAGCAATGAAACCATCGT+AGG 0.758983 8_2:-51852605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTATTTAGATAAT+TGG + chr8_2:51852739-51852758 Msa1253970:intron 10.0%
!!! GTATTAAGATAATTTTTTTT+TGG - chr8_2:51853014-51853033 None:intergenic 10.0%
!!! CAAAATTCATTAAATATTTT+AGG - chr8_2:51854295-51854314 None:intergenic 10.0%
!!! CTAAAATATTTAATGAATTT+TGG + chr8_2:51854293-51854312 Msa1253970:intron 10.0%
!!! TTATAAATTCAGTTTTTTTT+AGG + chr8_2:51854329-51854348 Msa1253970:intron 10.0%
!!! TATAAATTCAGTTTTTTTTA+GGG + chr8_2:51854330-51854349 Msa1253970:intron 10.0%
!! AAATAAATATTTACCATTTA+TGG - chr8_2:51856013-51856032 None:intergenic 10.0%
!! CTATGTATATATTTAAATTT+AGG - chr8_2:51856923-51856942 None:intergenic 10.0%
!! ATTTAATTATAATGAGAGAA+AGG + chr8_2:51852818-51852837 Msa1253970:intron 15.0%
!! TCAAGTTAAATATATTAAAG+TGG - chr8_2:51853425-51853444 None:intergenic 15.0%
!! ACATATTAATTAACTTAAGT+AGG + chr8_2:51853680-51853699 Msa1253970:intron 15.0%
!!! TTTTTTGCTAATAGAAATTT+AGG + chr8_2:51854072-51854091 Msa1253970:intron 15.0%
!!! TTTTTGCTAATAGAAATTTA+GGG + chr8_2:51854073-51854092 Msa1253970:intron 15.0%
!!! GGTTATTTTATGATAATTTT+TGG - chr8_2:51855053-51855072 None:intergenic 15.0%
!!! ATTGATAATAATGCTTAAAA+AGG - chr8_2:51855820-51855839 None:intergenic 15.0%
!!! ATTAATTTTCAATCTCTAAA+AGG + chr8_2:51856039-51856058 Msa1253970:intron 15.0%
!!! TATTTAACTTATAATTTTGG+TGG + chr8_2:51856209-51856228 Msa1253970:intron 15.0%
!! GTTTATTAAATCTTCATTAA+TGG - chr8_2:51856324-51856343 None:intergenic 15.0%
!! TTATATTACAACATTAACAT+AGG - chr8_2:51856673-51856692 None:intergenic 15.0%
!!! AGATAATTTTTTTTTGGTAG+TGG - chr8_2:51853008-51853027 None:intergenic 20.0%
!!! TAGTTTGTTTTTTTTTGTAG+TGG - chr8_2:51853094-51853113 None:intergenic 20.0%
!!! TACTTTTTTTTTTTTGGTAG+TGG - chr8_2:51853169-51853188 None:intergenic 20.0%
!! TGTGTAAGATTAATTTACTT+GGG - chr8_2:51853258-51853277 None:intergenic 20.0%
!! TTGTGTAAGATTAATTTACT+TGG - chr8_2:51853259-51853278 None:intergenic 20.0%
!! TCTAATTCGATTAGATAAAA+TGG - chr8_2:51853998-51854017 None:intergenic 20.0%
!! ATATAAAATCTTCATTGTCT+AGG - chr8_2:51854118-51854137 None:intergenic 20.0%
!! TAGTAAAAAACATGTATGTT+TGG - chr8_2:51854202-51854221 None:intergenic 20.0%
!! ACTGAATTTATAAATCTGTA+CGG - chr8_2:51854322-51854341 None:intergenic 20.0%
!!! TTGATCTCTCTTTTTTTTTA+GGG + chr8_2:51854377-51854396 Msa1253970:intron 20.0%
!! ATAAAATTAACTGGTGTTTA+TGG + chr8_2:51854657-51854676 Msa1253970:intron 20.0%
!! AAAATAACCATCCATTAATA+TGG - chr8_2:51855110-51855129 None:intergenic 20.0%
!!! GTATTTTAATTATAAGCCAA+CGG - chr8_2:51855257-51855276 None:intergenic 20.0%
!! AACAAAAATCACATGTATTA+AGG + chr8_2:51855893-51855912 Msa1253970:intron 20.0%
!! TAAGACAAAAATTTCACTTT+AGG + chr8_2:51856080-51856099 Msa1253970:intron 20.0%
!!! TTTATGACTATTTTTTATGC+TGG + chr8_2:51856167-51856186 Msa1253970:intron 20.0%
!! TGAAGATTTAATAAACAATC+CGG + chr8_2:51856328-51856347 Msa1253970:CDS 20.0%
!!! TAAAAGGTATTGTCAAATAT+TGG + chr8_2:51856586-51856605 Msa1253970:CDS 20.0%
!!! AAAAGGTATTGTCAAATATT+GGG + chr8_2:51856587-51856606 Msa1253970:CDS 20.0%
!! AATCTTCTTGCTAAATAAAA+CGG + chr8_2:51856740-51856759 Msa1253970:three_prime_UTR 20.0%
! ATTTGATCAAACAAAGATGA+TGG - chr8_2:51852538-51852557 None:intergenic 25.0%
! AAATCCATTAAAAGATCTAG+CGG - chr8_2:51852629-51852648 None:intergenic 25.0%
! AACTGTATTCTATGTAAAGT+AGG - chr8_2:51852770-51852789 None:intergenic 25.0%
! ATAATGAGAGAAAGGAAAAA+TGG + chr8_2:51852826-51852845 Msa1253970:intron 25.0%
! TCATATCATATGTGATTCAT+TGG + chr8_2:51853316-51853335 Msa1253970:intron 25.0%
!! AGTAGGTTGAAAAAAAAAGT+AGG + chr8_2:51853697-51853716 Msa1253970:intron 25.0%
! ATTAGTAGGAAGAATATACT+GGG - chr8_2:51853871-51853890 None:intergenic 25.0%
! AATTAGTAGGAAGAATATAC+TGG - chr8_2:51853872-51853891 None:intergenic 25.0%
!! TAATTAGCTTCACAATTAGT+AGG - chr8_2:51853885-51853904 None:intergenic 25.0%
! ACCAAAAAAGATAAAATGGT+GGG - chr8_2:51853909-51853928 None:intergenic 25.0%
! ATTCGATTAGATAAAATGGT+TGG - chr8_2:51853994-51854013 None:intergenic 25.0%
!!! CTTGATCTCTCTTTTTTTTT+AGG + chr8_2:51854376-51854395 Msa1253970:intron 25.0%
!!! TGATCTCTCTTTTTTTTTAG+GGG + chr8_2:51854378-51854397 Msa1253970:intron 25.0%
!!! ACATGGTTTGATTTTTAGAT+GGG - chr8_2:51854882-51854901 None:intergenic 25.0%
!!! AACATGGTTTGATTTTTAGA+TGG - chr8_2:51854883-51854902 None:intergenic 25.0%
! TTTCTCAAAGCATAATAACA+TGG - chr8_2:51854899-51854918 None:intergenic 25.0%
!!! ACCATTTTTAGAACAACTTT+TGG + chr8_2:51854932-51854951 Msa1253970:intron 25.0%
!!! CCATTTTTAGAACAACTTTT+GGG + chr8_2:51854933-51854952 Msa1253970:intron 25.0%
! CAAGAGAAATGATAATTGTA+CGG - chr8_2:51855074-51855093 None:intergenic 25.0%
! AAATACTAAAATACCTTCAG+CGG + chr8_2:51855221-51855240 Msa1253970:intron 25.0%
! GATGTTCTTATAAAGAATGA+CGG - chr8_2:51855872-51855891 None:intergenic 25.0%
!! CATGTATTAAGGAAAGTTTT+AGG + chr8_2:51855904-51855923 Msa1253970:intron 25.0%
!!! CATTTTAAGGATTCCATAAA+TGG + chr8_2:51855997-51856016 Msa1253970:intron 25.0%
! TTAAAAATACAATACACGTG+TGG - chr8_2:51856900-51856919 None:intergenic 25.0%
!!! TATTCGCCATTTTTTAAGAG+TGG - chr8_2:51852261-51852280 None:intergenic 30.0%
AACATAGTATCAACCAAGAT+AGG - chr8_2:51852288-51852307 None:intergenic 30.0%
!!! TGTAGCAAATTTGGTTTTTG+TGG + chr8_2:51852388-51852407 Msa1253970:CDS 30.0%
!!! GCTAGATCTTTTAATGGATT+TGG + chr8_2:51852628-51852647 Msa1253970:CDS 30.0%
TAGAATAACGAATATACCAG+TGG - chr8_2:51852722-51852741 None:intergenic 30.0%
GACAACGCATAAAATATACA+AGG + chr8_2:51852963-51852982 Msa1253970:intron 30.0%
GCATAAAATATACAAGGTCT+GGG + chr8_2:51852969-51852988 Msa1253970:intron 30.0%
CATAAAATATACAAGGTCTG+GGG + chr8_2:51852970-51852989 Msa1253970:intron 30.0%
!!! AATTTTTTTTTGGTAGTGGC+CGG - chr8_2:51853004-51853023 None:intergenic 30.0%
! ACTCATTGGTTATAGTTTGT+TGG - chr8_2:51853038-51853057 None:intergenic 30.0%
!!! TTGTTTTTTTTTGTAGTGGC+CGG - chr8_2:51853090-51853109 None:intergenic 30.0%
! ACTCATTGGTTATAGTTTGT+TGG - chr8_2:51853038-51853057 None:intergenic 30.0%
TCTCAATTTGCAAACAAACT+CGG - chr8_2:51853569-51853588 None:intergenic 30.0%
! AAAAAGTAGGTCGACTTAAT+AGG + chr8_2:51853710-51853729 Msa1253970:intron 30.0%
ATTTAGTCTGTGTCAAGTTT+AGG - chr8_2:51853828-51853847 None:intergenic 30.0%
AAATCGTATTCCCTGTTAAT+CGG + chr8_2:51853844-51853863 Msa1253970:intron 30.0%
! ACCCACCATTTTATCTTTTT+TGG + chr8_2:51853905-51853924 Msa1253970:intron 30.0%
CACCAAAAAAGATAAAATGG+TGG - chr8_2:51853910-51853929 None:intergenic 30.0%
!!! CACCATTTTATCTTTTTTGG+TGG + chr8_2:51853908-51853927 Msa1253970:intron 30.0%
CACCACCAAAAAAGATAAAA+TGG - chr8_2:51853913-51853932 None:intergenic 30.0%
!!! TTATCTTTTTTGGTGGTGTT+TGG + chr8_2:51853915-51853934 Msa1253970:intron 30.0%
!!! TATCTTTTTTGGTGGTGTTT+GGG + chr8_2:51853916-51853935 Msa1253970:intron 30.0%
GATTAGATAAAATGGTTGGT+TGG - chr8_2:51853990-51854009 None:intergenic 30.0%
!! AGAAATTTAGGGTATTGAGA+TGG + chr8_2:51854084-51854103 Msa1253970:intron 30.0%
! CCAGTTAATTTTATGCTCTA+TGG - chr8_2:51854651-51854670 None:intergenic 30.0%
CCATAGAGCATAAAATTAAC+TGG + chr8_2:51854648-51854667 Msa1253970:intron 30.0%
! GTTTGATTGTTTGAAATGCT+AGG - chr8_2:51854856-51854875 None:intergenic 30.0%
!! CATGGTTTGATTTTTAGATG+GGG - chr8_2:51854881-51854900 None:intergenic 30.0%
!! CCCAAAAGTTGTTCTAAAAA+TGG - chr8_2:51854936-51854955 None:intergenic 30.0%
AAATAGAGAGAGAAAAAGAG+AGG + chr8_2:51854987-51855006 Msa1253970:intron 30.0%
! CTTTTCCTTAGCCATATTAA+TGG + chr8_2:51855096-51855115 Msa1253970:intron 30.0%
TGAAGTGTATATTGGTAGAT+GGG - chr8_2:51855140-51855159 None:intergenic 30.0%
ATGAAGTGTATATTGGTAGA+TGG - chr8_2:51855141-51855160 None:intergenic 30.0%
AAACCACATGAAGTGTATAT+TGG - chr8_2:51855148-51855167 None:intergenic 30.0%
! AGCTTTCTCTTTTATGTCAT+TGG - chr8_2:51855365-51855384 None:intergenic 30.0%
ACATAAAAGAGAAAGCTTAG+AGG + chr8_2:51855368-51855387 Msa1253970:intron 30.0%
ATAGTGAGATTTCAATGAGA+AGG + chr8_2:51855491-51855510 Msa1253970:intron 30.0%
ACCTCATATAAACTTCAAGA+GGG - chr8_2:51855652-51855671 None:intergenic 30.0%
!! CTTAAAAAGGTGTCATCTAA+TGG - chr8_2:51855807-51855826 None:intergenic 30.0%
! TTCTTATAAAGAATGACGGA+GGG - chr8_2:51855868-51855887 None:intergenic 30.0%
! TATGTGTGAGTGTTACTATA+TGG + chr8_2:51855947-51855966 Msa1253970:intron 30.0%
! ATGTGTGAGTGTTACTATAT+GGG + chr8_2:51855948-51855967 Msa1253970:intron 30.0%
!!! TGTCTTTAGGACACATTTTA+AGG + chr8_2:51855984-51856003 Msa1253970:intron 30.0%
! ACTGTTTTATAGTGCTTTAG+TGG + chr8_2:51856240-51856259 Msa1253970:intron 30.0%
ATTGTAATTGCTGTGAACAA+GGG - chr8_2:51856282-51856301 None:intergenic 30.0%
AATTGTAATTGCTGTGAACA+AGG - chr8_2:51856283-51856302 None:intergenic 30.0%
GTTCACAGCAATTACAATTA+CGG + chr8_2:51856284-51856303 Msa1253970:intron 30.0%
TATCATTCAAGACAGCTATA+TGG + chr8_2:51856375-51856394 Msa1253970:CDS 30.0%
GTGATCACCAATATAATCAA+TGG + chr8_2:51856506-51856525 Msa1253970:CDS 30.0%
ATCACCAATATAATCAATGG+TGG + chr8_2:51856509-51856528 Msa1253970:CDS 30.0%
TCACCAATATAATCAATGGT+GGG + chr8_2:51856510-51856529 Msa1253970:CDS 30.0%
TTACAATCCAAATTATCACC+GGG - chr8_2:51856620-51856639 None:intergenic 30.0%
GTTACAATCCAAATTATCAC+CGG - chr8_2:51856621-51856640 None:intergenic 30.0%
ATTTGGATTGTAACAACCAA+AGG + chr8_2:51856627-51856646 Msa1253970:CDS 30.0%
!!! CCATTTTTTAAGAGTGGAGT+CGG - chr8_2:51852255-51852274 None:intergenic 35.0%
TGGCGAATATAAACCTATCT+TGG + chr8_2:51852272-51852291 Msa1253970:CDS 35.0%
GCTTTAGCTACAAGAAAAAG+AGG - chr8_2:51852316-51852335 None:intergenic 35.0%
GTGTTGGAGAAGATTTACAT+TGG - chr8_2:51852450-51852469 None:intergenic 35.0%
! CATGGATTTTATACCTACGA+TGG + chr8_2:51852592-51852611 Msa1253970:CDS 35.0%
!! TTTAATGGATTTGGTACCAC+TGG + chr8_2:51852637-51852656 Msa1253970:CDS 35.0%
CGCATAAAATATACAAGGTC+TGG + chr8_2:51852968-51852987 Msa1253970:intron 35.0%
!!! ATTTTTTTTTGGTAGTGGCC+GGG - chr8_2:51853003-51853022 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_2:51853052-51853071 None:intergenic 35.0%
!!! TGTTTTTTTTTGTAGTGGCC+GGG - chr8_2:51853089-51853108 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_2:51853052-51853071 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_2:51853052-51853071 None:intergenic 35.0%
! CTCAAGCTTCTTTTCATCAT+TGG - chr8_2:51853355-51853374 None:intergenic 35.0%
AATCGTATTCCCTGTTAATC+GGG + chr8_2:51853845-51853864 Msa1253970:intron 35.0%
!!! ATCTTTTTTGGTGGTGTTTG+GGG + chr8_2:51853917-51853936 Msa1253970:intron 35.0%
! TGAGCTTAACTCAGTTGATA+AGG - chr8_2:51853961-51853980 None:intergenic 35.0%
TATCAACTGAGTTAAGCTCA+CGG + chr8_2:51853961-51853980 Msa1253970:intron 35.0%
ATATTGCTTTGTCACCGAAA+AGG + chr8_2:51854728-51854747 Msa1253970:CDS 35.0%
! TCTTACTGAGTGAGTTGAAT+TGG - chr8_2:51854825-51854844 None:intergenic 35.0%
TCCTTAGCCATATTAATGGA+TGG + chr8_2:51855100-51855119 Msa1253970:intron 35.0%
ACCATCCATTAATATGGCTA+AGG - chr8_2:51855104-51855123 None:intergenic 35.0%
CTACCAATATACACTTCATG+TGG + chr8_2:51855142-51855161 Msa1253970:intron 35.0%
CTTGTGTTTCCAAGACATAT+TGG + chr8_2:51855320-51855339 Msa1253970:intron 35.0%
TTCTGACATCCAATATGTCT+TGG - chr8_2:51855332-51855351 None:intergenic 35.0%
ACCCTCTTGAAGTTTATATG+AGG + chr8_2:51855648-51855667 Msa1253970:intron 35.0%
CACCTCATATAAACTTCAAG+AGG - chr8_2:51855653-51855672 None:intergenic 35.0%
CTCTTGAAGTTTATATGAGG+TGG + chr8_2:51855651-51855670 Msa1253970:intron 35.0%
TGAAGTTTATATGAGGTGGA+TGG + chr8_2:51855655-51855674 Msa1253970:intron 35.0%
GAAGTTTATATGAGGTGGAT+GGG + chr8_2:51855656-51855675 Msa1253970:intron 35.0%
AAGTTTATATGAGGTGGATG+GGG + chr8_2:51855657-51855676 Msa1253970:intron 35.0%
TCATCACTTGATACCAAACA+TGG + chr8_2:51855690-51855709 Msa1253970:intron 35.0%
ATTAAGAGAGAGAAGATGAG+TGG + chr8_2:51855730-51855749 Msa1253970:intron 35.0%
GTTCTTATAAAGAATGACGG+AGG - chr8_2:51855869-51855888 None:intergenic 35.0%
! TCATGCTAACTTGTGTCTTT+AGG + chr8_2:51855971-51855990 Msa1253970:intron 35.0%
CAATTACAATTACGGTCAAG+CGG + chr8_2:51856292-51856311 Msa1253970:CDS 35.0%
AATTACAATTACGGTCAAGC+GGG + chr8_2:51856293-51856312 Msa1253970:CDS 35.0%
CTGTCTTGAATGATACAGTT+GGG - chr8_2:51856370-51856389 None:intergenic 35.0%
! TCAAGACAGCTATATGGTTT+TGG + chr8_2:51856381-51856400 Msa1253970:CDS 35.0%
ATCTTCCAGTAATCACATCA+TGG - chr8_2:51856436-51856455 None:intergenic 35.0%
ATGATGTGATTACTGGAAGA+TGG + chr8_2:51856435-51856454 Msa1253970:CDS 35.0%
! ATCGGGTCGGATTTTATAAA+AGG + chr8_2:51856570-51856589 Msa1253970:CDS 35.0%
TACAATCCAAATTATCACCG+GGG - chr8_2:51856619-51856638 None:intergenic 35.0%
TTAACATAGGTACTTCGCTT+AGG - chr8_2:51856660-51856679 None:intergenic 35.0%
AAAATACAATACACGTGTGG+AGG - chr8_2:51856897-51856916 None:intergenic 35.0%
!! TTTTAAGAGTGGAGTCGGTT+TGG - chr8_2:51852250-51852269 None:intergenic 40.0%
CCGACTCCACTCTTAAAAAA+TGG + chr8_2:51852252-51852271 Msa1253970:exon 40.0%
GTAGCTAAAGCAGAACAATG+TGG + chr8_2:51852325-51852344 Msa1253970:CDS 40.0%
CAATGTGGTAGTCAAGCTAA+TGG + chr8_2:51852340-51852359 Msa1253970:CDS 40.0%
AATGGAGCTCTTTGTCCAAA+TGG + chr8_2:51852358-51852377 Msa1253970:CDS 40.0%
ATGGAGCTCTTTGTCCAAAT+GGG + chr8_2:51852359-51852378 Msa1253970:CDS 40.0%
TTGCTACAACATAGCCCATT+TGG - chr8_2:51852376-51852395 None:intergenic 40.0%
GGGCTATGTTGTAGCAAATT+TGG + chr8_2:51852379-51852398 Msa1253970:CDS 40.0%
AAGCAGCAAGTTCCTTCTTA+CGG - chr8_2:51852675-51852694 None:intergenic 40.0%
!!! GAAGGAACTTGCTGCTTTTT+TGG + chr8_2:51852678-51852697 Msa1253970:CDS 40.0%
CAAACTTCTCATGAAACCAC+TGG + chr8_2:51852703-51852722 Msa1253970:CDS 40.0%
! TGAGTTTAGCTCAGTTGGTT+GGG + chr8_2:51852941-51852960 Msa1253970:intron 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+GGG - chr8_2:51853002-51853021 None:intergenic 40.0%
GGGTTTGAAGAGCTTCAAAA+TGG - chr8_2:51853068-51853087 None:intergenic 40.0%
!!! TTTTGAAGCTCTTCAAACCC+CGG + chr8_2:51853068-51853087 Msa1253970:intron 40.0%
!!! GTTTTTTTTTGTAGTGGCCG+GGG - chr8_2:51853088-51853107 None:intergenic 40.0%
GGGTTTGAAGAGCTTCAAAA+TGG - chr8_2:51853068-51853087 None:intergenic 40.0%
!!! TTTTGAAGCTCTTCAAACCC+CGG + chr8_2:51853068-51853087 Msa1253970:intron 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+CGG - chr8_2:51853002-51853021 None:intergenic 40.0%
CTTGGGACAAAGCTTCAAAA+TGG - chr8_2:51853241-51853260 None:intergenic 40.0%
ATCAACTGAGTTAAGCTCAC+GGG + chr8_2:51853962-51853981 Msa1253970:intron 40.0%
!! TTAGGGTATTGAGATGGACT+AGG + chr8_2:51854090-51854109 Msa1253970:intron 40.0%
!! TAGGGTATTGAGATGGACTA+GGG + chr8_2:51854091-51854110 Msa1253970:intron 40.0%
AGAATATATCTCCCTCCGAA+AGG + chr8_2:51854145-51854164 Msa1253970:intron 40.0%
CATGTATGTTTGGACTCTGA+GGG - chr8_2:51854192-51854211 None:intergenic 40.0%
ACATGTATGTTTGGACTCTG+AGG - chr8_2:51854193-51854212 None:intergenic 40.0%
! CCATGAAACCACACTTTTGT+CGG + chr8_2:51854529-51854548 Msa1253970:intron 40.0%
! ACACTTTTGTCGGTAAGTGT+CGG + chr8_2:51854539-51854558 Msa1253970:intron 40.0%
!! TATCTTTTACCAGGAGCACA+TGG - chr8_2:51854789-51854808 None:intergenic 40.0%
GCTCCTGGTAAAAGATACTA+TGG + chr8_2:51854792-51854811 Msa1253970:CDS 40.0%
! CTGCCATAGTATCTTTTACC+AGG - chr8_2:51854798-51854817 None:intergenic 40.0%
GGTAAAAGATACTATGGCAG+AGG + chr8_2:51854798-51854817 Msa1253970:CDS 40.0%
!! GGTTTGATTTTTAGATGGGG+TGG - chr8_2:51854878-51854897 None:intergenic 40.0%
ATACCAAACATGGAGAGAGT+GGG + chr8_2:51855700-51855719 Msa1253970:intron 40.0%
!! GAGAAGATGAGTGGATTGAA+CGG + chr8_2:51855739-51855758 Msa1253970:intron 40.0%
GAATGATACAGTTGGGTTTG+TGG - chr8_2:51856363-51856382 None:intergenic 40.0%
GCTGTCTTGAATGATACAGT+TGG - chr8_2:51856371-51856390 None:intergenic 40.0%
!! TTGATGGCTTGTTTGCTTGA+GGG - chr8_2:51856412-51856431 None:intergenic 40.0%
GTAATCACATCATGGCTTGA+TGG - chr8_2:51856428-51856447 None:intergenic 40.0%
TCAAGCCATGATGTGATTAC+TGG + chr8_2:51856428-51856447 Msa1253970:CDS 40.0%
! GAGCCCACCATTGATTATAT+TGG - chr8_2:51856516-51856535 None:intergenic 40.0%
!! GGTAGCACTGATCAATACTG+TGG + chr8_2:51852409-51852428 Msa1253970:CDS 45.0%
ACTGATCAATACTGTGGAGC+TGG + chr8_2:51852415-51852434 Msa1253970:CDS 45.0%
! GCTGCCGCTAGATCTTTTAA+TGG + chr8_2:51852622-51852641 Msa1253970:CDS 45.0%
AGCAGCAAGTTCCTTCTTAC+GGG - chr8_2:51852674-51852693 None:intergenic 45.0%
! GTGAGTTTAGCTCAGTTGGT+TGG + chr8_2:51852940-51852959 Msa1253970:intron 45.0%
!!! TTTTTTTTGGTAGTGGCCGC+GGG - chr8_2:51853162-51853181 None:intergenic 45.0%
TATACTGGGCCCGATTAACA+GGG - chr8_2:51853857-51853876 None:intergenic 45.0%
ATATACTGGGCCCGATTAAC+AGG - chr8_2:51853858-51853877 None:intergenic 45.0%
TCAACTGAGTTAAGCTCACG+GGG + chr8_2:51853963-51853982 Msa1253970:intron 45.0%
! CCGACAAAAGTGTGGTTTCA+TGG - chr8_2:51854532-51854551 None:intergenic 45.0%
GACACTTACCGACAAAAGTG+TGG - chr8_2:51854540-51854559 None:intergenic 45.0%
ACTGGTGTTTATGGACATGC+AGG + chr8_2:51854666-51854685 Msa1253970:intron 45.0%
GTGTTTATGGACATGCAGGA+GGG + chr8_2:51854670-51854689 Msa1253970:intron 45.0%
AAGCAATATCCCCACGCATA+TGG - chr8_2:51854717-51854736 None:intergenic 45.0%
GGGTGTACAAAAGTCTCCTT+GGG - chr8_2:51854757-51854776 None:intergenic 45.0%
! CAAGGAGACTTTTGTACACC+CGG + chr8_2:51854756-51854775 Msa1253970:CDS 45.0%
! ACTTTTGTACACCCGGAGAT+TGG + chr8_2:51854763-51854782 Msa1253970:CDS 45.0%
AACCCAACGACAGTTAGCTA+CGG - chr8_2:51855286-51855305 None:intergenic 45.0%
AGGGGAAATCAAGAGAGAGA+GGG - chr8_2:51855601-51855620 None:intergenic 45.0%
GATACCAAACATGGAGAGAG+TGG + chr8_2:51855699-51855718 Msa1253970:intron 45.0%
!! AGATGAGTGGATTGAACGGA+TGG + chr8_2:51855743-51855762 Msa1253970:intron 45.0%
!! TGATGGCTTGTTTGCTTGAG+GGG - chr8_2:51856411-51856430 None:intergenic 45.0%
!! CTTGATGGCTTGTTTGCTTG+AGG - chr8_2:51856413-51856432 None:intergenic 45.0%
AGGATCCTAAAGTCGAGGAT+CGG + chr8_2:51856552-51856571 Msa1253970:CDS 45.0%
CAAATATTGGGAGTGAACCC+CGG + chr8_2:51856599-51856618 Msa1253970:CDS 45.0%
AGTGAACCCCGGTGATAATT+TGG + chr8_2:51856610-51856629 Msa1253970:CDS 45.0%
AGGTACTTCGCTTAGGCAAA+TGG - chr8_2:51856653-51856672 None:intergenic 45.0%
GACTAAAAAGCTAGACGTGC+AGG + chr8_2:51856812-51856831 Msa1253970:three_prime_UTR 45.0%
!!! TTATATTACTTTTTTTTTTT+TGG - chr8_2:51853175-51853194 None:intergenic 5.0%
!!! AAATATAAATATTTTTTTAG+AGG + chr8_2:51853632-51853651 Msa1253970:intron 5.0%
!! TATTATTTATTAAAAACAAA+GGG - chr8_2:51854030-51854049 None:intergenic 5.0%
!! ATATTATTTATTAAAAACAA+AGG - chr8_2:51854031-51854050 None:intergenic 5.0%
!!! ATATATTTAACTTATAATTT+TGG + chr8_2:51856206-51856225 Msa1253970:intron 5.0%
!! AATATAAAGTATAATAATAA+AGG + chr8_2:51856686-51856705 Msa1253970:three_prime_UTR 5.0%
!! ATATAAAGTATAATAATAAA+GGG + chr8_2:51856687-51856706 Msa1253970:three_prime_UTR 5.0%
!! GGTGTTGGTGTTGATGGTGT+CGG - chr8_2:51852472-51852491 None:intergenic 50.0%
!! GGTGTTGGTGTTGGTGTTGA+TGG - chr8_2:51852478-51852497 None:intergenic 50.0%
!! CCTGTACTAGGTGTTGGTGT+TGG - chr8_2:51852487-51852506 None:intergenic 50.0%
CCAACACCAACACCTAGTAC+AGG + chr8_2:51852484-51852503 Msa1253970:CDS 50.0%
ACACCAACACCTAGTACAGG+TGG + chr8_2:51852487-51852506 Msa1253970:CDS 50.0%
CGAAATGATCAGCGTTGTGC+TGG + chr8_2:51852568-51852587 Msa1253970:CDS 50.0%
GGCAGCAATGAAACCATCGT+AGG - chr8_2:51852608-51852627 None:intergenic 50.0%
! TGATGATGCCACCCGTAAGA+AGG + chr8_2:51852660-51852679 Msa1253970:CDS 50.0%
AGCAAGTTCCTTCTTACGGG+TGG - chr8_2:51852671-51852690 None:intergenic 50.0%
CCAACTGAGCTAAACTCACG+AGG - chr8_2:51852939-51852958 None:intergenic 50.0%
! CCTCGTGAGTTTAGCTCAGT+TGG + chr8_2:51852936-51852955 Msa1253970:intron 50.0%
GTTCGAGCCTAGCTACCTTT+CGG - chr8_2:51854163-51854182 None:intergenic 50.0%
! GTTTGGACTCTGAGGGTTCT+CGG - chr8_2:51854185-51854204 None:intergenic 50.0%
GGTGTTTATGGACATGCAGG+AGG + chr8_2:51854669-51854688 Msa1253970:intron 50.0%
TTTATGGACATGCAGGAGGG+TGG + chr8_2:51854673-51854692 Msa1253970:intron 50.0%
! GTCTCCTTGGGCATCCTTTT+CGG - chr8_2:51854745-51854764 None:intergenic 50.0%
CGGGTGTACAAAAGTCTCCT+TGG - chr8_2:51854758-51854777 None:intergenic 50.0%
CGGTAGTTAACTACCGCTGA+AGG - chr8_2:51855237-51855256 None:intergenic 50.0%
CAGCGGTAGTTAACTACCGT+TGG + chr8_2:51855238-51855257 Msa1253970:intron 50.0%
AGCCGTAGCTAACTGTCGTT+GGG + chr8_2:51855281-51855300 Msa1253970:intron 50.0%
GGGTTGGATGGACGAGAAAT+AGG - chr8_2:51855573-51855592 None:intergenic 50.0%
GGGAAATCAAGAGAGAGAGG+GGG - chr8_2:51855599-51855618 None:intergenic 50.0%
GGGGAAATCAAGAGAGAGAG+GGG - chr8_2:51855600-51855619 None:intergenic 50.0%
GAGGGGAAATCAAGAGAGAG+AGG - chr8_2:51855602-51855621 None:intergenic 50.0%
TTTCCCCTCTCTCTCTCTCT+TGG + chr8_2:51855613-51855632 Msa1253970:intron 50.0%
TCTCTCTCTTGGTGGGAATG+TGG + chr8_2:51855624-51855643 Msa1253970:intron 50.0%
CAGTTGGGTTTGTGGAGACT+AGG - chr8_2:51856355-51856374 None:intergenic 50.0%
! ATTGGTGATCACGCCGTATC+CGG - chr8_2:51856498-51856517 None:intergenic 50.0%
!! ATCAATGGTGGGCTCGAATG+CGG + chr8_2:51856521-51856540 Msa1253970:CDS 50.0%
AGGTCAGGATCCTAAAGTCG+AGG + chr8_2:51856547-51856566 Msa1253970:CDS 50.0%
GGATCCTAAAGTCGAGGATC+GGG + chr8_2:51856553-51856572 Msa1253970:CDS 50.0%
TCGCTTAGGCAAATGGCCTT+TGG - chr8_2:51856646-51856665 None:intergenic 50.0%
AGGTACGATACGATCAGGCA+CGG + chr8_2:51856832-51856851 Msa1253970:three_prime_UTR 50.0%
ATCAGGCACGGATCTAGTGT+GGG + chr8_2:51856844-51856863 Msa1253970:three_prime_UTR 50.0%
ATACACGTGTGGAGGCAAGT+GGG - chr8_2:51856889-51856908 None:intergenic 50.0%
AATACACGTGTGGAGGCAAG+TGG - chr8_2:51856890-51856909 None:intergenic 50.0%
!! GGTGTTGATGGTGTCGGTGT+TGG - chr8_2:51852466-51852485 None:intergenic 55.0%
CCACCACCTGTACTAGGTGT+TGG - chr8_2:51852493-51852512 None:intergenic 55.0%
CCAACACCTAGTACAGGTGG+TGG + chr8_2:51852490-51852509 Msa1253970:CDS 55.0%
! ACACCTAGTACAGGTGGTGG+TGG + chr8_2:51852493-51852512 Msa1253970:CDS 55.0%
TCTCCACCACCACCTGTACT+AGG - chr8_2:51852499-51852518 None:intergenic 55.0%
!! ACAGGTGGTGGTGGAGATGT+TGG + chr8_2:51852502-51852521 Msa1253970:CDS 55.0%
! GATCAGCGTTGTGCTGGTCA+TGG + chr8_2:51852574-51852593 Msa1253970:CDS 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + chr8_2:51852982-51853001 Msa1253970:intron 55.0%
TCTCCCTCCGAAAGGTAGCT+AGG + chr8_2:51854153-51854172 Msa1253970:intron 55.0%
GAGCCTAGCTACCTTTCGGA+GGG - chr8_2:51854159-51854178 None:intergenic 55.0%
TATGGACCGTCTGGTGCACT+TGG - chr8_2:51854699-51854718 None:intergenic 55.0%
ACCAGACGGTCCATATGCGT+GGG + chr8_2:51854704-51854723 Msa1253970:CDS 55.0%
GTCACCGAAAAGGATGCCCA+AGG + chr8_2:51854738-51854757 Msa1253970:CDS 55.0%
! AGGAGCACATGGCCAATCTC+CGG - chr8_2:51854778-51854797 None:intergenic 55.0%
CAGCCGTAGCTAACTGTCGT+TGG + chr8_2:51855280-51855299 Msa1253970:intron 55.0%
! TCAAGAGAGAGAGGGGGTGT+GGG - chr8_2:51855593-51855612 None:intergenic 55.0%
ATCAAGAGAGAGAGGGGGTG+TGG - chr8_2:51855594-51855613 None:intergenic 55.0%
CCACCAAGAGAGAGAGAGAG+GGG - chr8_2:51855619-51855638 None:intergenic 55.0%
CCCACCAAGAGAGAGAGAGA+GGG - chr8_2:51855620-51855639 None:intergenic 55.0%
CCCTCTCTCTCTCTCTTGGT+GGG + chr8_2:51855617-51855636 Msa1253970:intron 55.0%
TCCCACCAAGAGAGAGAGAG+AGG - chr8_2:51855621-51855640 None:intergenic 55.0%
CCTCCCACTCTCTCCATGTT+TGG - chr8_2:51855706-51855725 None:intergenic 55.0%
CCAAACATGGAGAGAGTGGG+AGG + chr8_2:51855703-51855722 Msa1253970:intron 55.0%
GGGTTTGTGGAGACTAGGTC+CGG - chr8_2:51856350-51856369 None:intergenic 55.0%
! TTGGTGATCACGCCGTATCC+GGG - chr8_2:51856497-51856516 None:intergenic 55.0%
!! TCAATGGTGGGCTCGAATGC+GGG + chr8_2:51856522-51856541 Msa1253970:CDS 55.0%
CCTAAAGTCGAGGATCGGGT+CGG + chr8_2:51856557-51856576 Msa1253970:CDS 55.0%
CGTGCAGGTACGATACGATC+AGG + chr8_2:51856827-51856846 Msa1253970:three_prime_UTR 55.0%
GATCAGGCACGGATCTAGTG+TGG + chr8_2:51856843-51856862 Msa1253970:three_prime_UTR 55.0%
TCAGGCACGGATCTAGTGTG+GGG + chr8_2:51856845-51856864 Msa1253970:three_prime_UTR 55.0%
GGATCTAGTGTGGGGGCAAT+GGG + chr8_2:51856853-51856872 Msa1253970:three_prime_UTR 55.0%
GATCTAGTGTGGGGGCAATG+GGG + chr8_2:51856854-51856873 Msa1253970:three_prime_UTR 55.0%
ACGGGTGGCATCATCACCAG+TGG - chr8_2:51852656-51852675 None:intergenic 60.0%
CGAGCCTAGCTACCTTTCGG+AGG - chr8_2:51854160-51854179 None:intergenic 60.0%
CACCAGACGGTCCATATGCG+TGG + chr8_2:51854703-51854722 Msa1253970:CDS 60.0%
CCAGACGGTCCATATGCGTG+GGG + chr8_2:51854705-51854724 Msa1253970:CDS 60.0%
GGAGCACATGGCCAATCTCC+GGG - chr8_2:51854777-51854796 None:intergenic 60.0%
! GGAGATTGGCCATGTGCTCC+TGG + chr8_2:51854777-51854796 Msa1253970:CDS 60.0%
CCCCTCTCTCTCTCTCTTGG+TGG + chr8_2:51855616-51855635 Msa1253970:intron 60.0%
GCTGAGCTGTCAGCAGCTGA+TGG - chr8_2:51856464-51856483 None:intergenic 60.0%
TCAGCTGCTGACAGCTCAGC+AGG + chr8_2:51856464-51856483 Msa1253970:CDS 60.0%
CAGCTGCTGACAGCTCAGCA+GGG + chr8_2:51856465-51856484 Msa1253970:CDS 60.0%
TGGTGATCACGCCGTATCCG+GGG - chr8_2:51856496-51856515 None:intergenic 60.0%
GCTCGAATGCGGGAAAGGTC+AGG + chr8_2:51856532-51856551 Msa1253970:CDS 60.0%
CCGACCCGATCCTCGACTTT+AGG - chr8_2:51856560-51856579 None:intergenic 60.0%
CAGGCACGGATCTAGTGTGG+GGG + chr8_2:51856846-51856865 Msa1253970:three_prime_UTR 60.0%
CGGATCTAGTGTGGGGGCAA+TGG + chr8_2:51856852-51856871 Msa1253970:three_prime_UTR 60.0%
!!! TTTTGGTAGTGGCCGCGGGC+CGG - chr8_2:51853158-51853177 None:intergenic 65.0%
GGGTGGCCAAGTGCACCAGA+CGG + chr8_2:51854690-51854709 Msa1253970:CDS 65.0%
CCCCACGCATATGGACCGTC+TGG - chr8_2:51854708-51854727 None:intergenic 65.0%
!! GAGAGGGGGTGTGGGTTGGA+TGG - chr8_2:51855585-51855604 None:intergenic 65.0%
! GAGAGAGAGGGGGTGTGGGT+TGG - chr8_2:51855589-51855608 None:intergenic 65.0%
CTGCTGACAGCTCAGCAGGG+CGG + chr8_2:51856468-51856487 Msa1253970:CDS 65.0%
TGCTGACAGCTCAGCAGGGC+GGG + chr8_2:51856469-51856488 Msa1253970:CDS 65.0%
! GGTGGGCTCGAATGCGGGAA+AGG + chr8_2:51856527-51856546 Msa1253970:CDS 65.0%
GCTCTTCAAACCCCGGCCCG+CGG + chr8_2:51853143-51853162 Msa1253970:intron 70.0%
!! TTTGGTAGTGGCCGCGGGCC+GGG - chr8_2:51853157-51853176 None:intergenic 70.0%
!! TTGGTAGTGGCCGCGGGCCG+GGG - chr8_2:51853156-51853175 None:intergenic 75.0%
AGCTCAGCAGGGCGGGTCCC+CGG + chr8_2:51856476-51856495 Msa1253970:CDS 75.0%
GCAGGGCGGGTCCCCGGATA+CGG + chr8_2:51856482-51856501 Msa1253970:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 51852239 51856957 51852239 ID=Msa1253970;Name=Msa1253970
chr8_2 mRNA 51852239 51856957 51852239 ID=Msa1253970-mRNA-1;Parent=Msa1253970;Name=Msa1253970-mRNA-1;_AED=0.22;_eAED=0.22;_QI=32|1|1|1|1|1|3|296|324
chr8_2 exon 51852239 51852724 51852239 ID=Msa1253970-mRNA-1:exon:15888;Parent=Msa1253970-mRNA-1
chr8_2 exon 51854688 51854838 51854688 ID=Msa1253970-mRNA-1:exon:15889;Parent=Msa1253970-mRNA-1
chr8_2 exon 51856292 51856957 51856292 ID=Msa1253970-mRNA-1:exon:15890;Parent=Msa1253970-mRNA-1
chr8_2 five_prime_UTR 51852239 51852270 51852239 ID=Msa1253970-mRNA-1:five_prime_utr;Parent=Msa1253970-mRNA-1
chr8_2 CDS 51852271 51852724 51852271 ID=Msa1253970-mRNA-1:cds;Parent=Msa1253970-mRNA-1
chr8_2 CDS 51854688 51854838 51854688 ID=Msa1253970-mRNA-1:cds;Parent=Msa1253970-mRNA-1
chr8_2 CDS 51856292 51856661 51856292 ID=Msa1253970-mRNA-1:cds;Parent=Msa1253970-mRNA-1
chr8_2 three_prime_UTR 51856662 51856957 51856662 ID=Msa1253970-mRNA-1:three_prime_utr;Parent=Msa1253970-mRNA-1
Gene Sequence

>Msa1253970

ATGGCGAATATAAACCTATCTTGGTTGATACTATGTTTACTACCTCTTTTTCTTGTAGCTAAAGCAGAACAATGTGGTAGTCAAGCTAATGGAGCTCTTTGTCCAAATGGGCTATGTTGTAGCAAATTTGGTTTTTGTGGTAGCACTGATCAATACTGTGGAGCTGGTTGTCAGAGCCAATGTAAATCTTCTCCAACACCGACACCATCAACACCAACACCAACACCTAGTACAGGTGGTGGTGGAGATGTTGGAAGTATTATTCCATCATCTTTGTTTGATCAAATGCTTAAATATCGAAATGATCAGCGTTGTGCTGGTCATGGATTTTATACCTACGATGGTTTCATTGCTGCCGCTAGATCTTTTAATGGATTTGGTACCACTGGTGATGATGCCACCCGTAAGAAGGAACTTGCTGCTTTTTTGGCTCAAACTTCTCATGAAACCACTGGAGGGTGGCCAAGTGCACCAGACGGTCCATATGCGTGGGGATATTGCTTTGTCACCGAAAAGGATGCCCAAGGAGACTTTTGTACACCCGGAGATTGGCCATGTGCTCCTGGTAAAAGATACTATGGCAGAGGACCAATTCAACTCACTCACAATTACAATTACGGTCAAGCGGGTAAAGCCATTAATGAAGATTTAATAAACAATCCGGACCTAGTCTCCACAAACCCAACTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGCAAACAAGCCATCAAGCCATGATGTGATTACTGGAAGATGGAAGCCATCAGCTGCTGACAGCTCAGCAGGGCGGGTCCCCGGATACGGCGTGATCACCAATATAATCAATGGTGGGCTCGAATGCGGGAAAGGTCAGGATCCTAAAGTCGAGGATCGGGTCGGATTTTATAAAAGGTATTGTCAAATATTGGGAGTGAACCCCGGTGATAATTTGGATTGTAACAACCAAAGGCCATTTGCCTAA
Protein sequence

>Msa1253970

MANINLSWLILCLLPLFLVAKAEQCGSQANGALCPNGLCCSKFGFCGSTDQYCGAGCQSQCKSSPTPTPSTPTPTPSTGGGGDVGSIIPSSLFDQMLKYRNDQRCAGHGFYTYDGFIAAARSFNGFGTTGDDATRKKELAAFLAQTSHETTGGWPSAPDGPYAWGYCFVTEKDAQGDFCTPGDWPCAPGKRYYGRGPIQLTHNYNYGQAGKAINEDLINNPDLVSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWKPSAADSSAGRVPGYGVITNIINGGLECGKGQDPKVEDRVGFYKRYCQILGVNPGDNLDCNNQRPFA*