AlfalfaGEDB | Msa1200960

M. sativa cultivar zhongmu-4 / Msa1200960

KEGG: K20547
GO: -
PFAM: PF00187.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200960	XP_003629191.3	96.273	322	10	1	1	322	12	331	0.0	637

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200960	sp\|P36907\|CHIX_PEA	84.013	319	48	1	4	322	5	320	0.0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006050	Msa1200960	0.809358	1.968468e-50	-8.615850e-47
Msa0006700	Msa1200960	0.829692	4.465998e-55	-8.615850e-47
Msa0008850	Msa1200960	0.801840	7.448043e-49	-8.615850e-47
Msa0026930	Msa1200960	0.803288	3.743944e-49	-8.615850e-47
Msa0028280	Msa1200960	0.816925	4.299860e-52	-8.615850e-47
Msa0038310	Msa1200960	0.832827	7.569872e-56	-8.615850e-47
Msa0047470	Msa1200960	0.815528	8.829085e-52	-8.615850e-47
Msa0051100	Msa1200960	0.808758	2.645875e-50	-8.615850e-47
Msa0064550	Msa1200960	0.816746	4.716957e-52	-8.615850e-47
Msa0072830	Msa1200960	0.820546	6.477638e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200960	MtrunA17_Chr8g0370821	96.273	322	10	1	1	322	12	331	0.0	637
Msa1200960	MtrunA17_Chr8g0370851	77.882	321	68	1	2	322	3	320	0.0	510
Msa1200960	MtrunA17_Chr8g0370831	83.498	303	37	1	20	322	20	309	7.34e-177	491
Msa1200960	MtrunA17_Chr3g0145981	62.422	322	106	2	1	321	24	331	3.21e-148	420
Msa1200960	MtrunA17_Chr7g0270841	51.653	242	115	1	82	321	36	277	8.64e-91	272
Msa1200960	MtrunA17_Chr2g0329791	38.558	319	143	11	1	315	13	282	1.03e-63	203
Msa1200960	MtrunA17_Chr2g0329781	39.404	302	135	10	18	315	6	263	1.33e-59	192
Msa1200960	MtrunA17_Chr7g0221751	40.083	242	134	4	91	321	69	310	3.35e-55	182
Msa1200960	MtrunA17_Chr1g0206111	38.843	242	137	4	91	321	72	313	1.85e-53	177
Msa1200960	MtrunA17_Chr2g0294721	38.272	243	138	5	91	321	65	307	1.74e-52	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200960	AT3G12500.1	66.007	303	93	3	22	322	33	327	3.95e-141	402
Msa1200960	AT4G01700.1	54.733	243	108	1	82	322	38	280	6.47e-100	295
Msa1200960	AT1G02360.1	52.675	243	113	1	82	322	30	272	4.00e-95	283
Msa1200960	AT1G02360.3	52.675	243	113	1	82	322	82	324	9.68e-95	284
Msa1200960	AT1G02360.2	52.675	243	113	1	82	322	76	318	9.70e-95	284
Msa1200960	AT2G43620.1	39.185	319	135	13	9	315	12	283	3.21e-62	199
Msa1200960	AT2G43610.1	39.623	318	133	14	9	315	12	281	6.32e-61	196
Msa1200960	AT3G54420.1	36.392	316	147	8	3	315	9	273	1.14e-59	192
Msa1200960	AT2G43590.1	37.209	301	128	11	19	315	21	264	6.02e-57	185
Msa1200960	AT1G05850.1	37.603	242	140	4	91	321	69	310	1.76e-55	183

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Find 118 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATTGTCAAATATT+GGG	0.316123	8_1:+54089315	Msa1200960:CDS
AAAATACAATACACGTGTGG+AGG	0.627022	8_1:-54089621	None:intergenic
AAATCCATTAAAAGATCTAG+CGG	0.646204	8_1:-54085287	None:intergenic
AACATAGTATCAACCAAGAA+AGG	0.507901	8_1:-54084952	None:intergenic
AAGCAATATCCCCACGCATA+TGG	0.409090	8_1:-54087463	None:intergenic
AAGCAGCAAGTTCCTTCTTA+CGG	0.405236	8_1:-54085333	None:intergenic
AATACACGTGTGGAGGCAAG+TGG	0.617596	8_1:-54089614	None:intergenic
AATATAAAGTATAATAATAA+AGG	0.286460	8_1:+54089414	Msa1200960:three_prime_UTR
AATCTTCTTGCTAAATAAAA+CGG	0.414743	8_1:+54089468	Msa1200960:three_prime_UTR
AATGGAGCTCTTTGTCCAAA+TGG	0.398942	8_1:+54085025	Msa1200960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATAGTATCAACCAAGAA+AGG	-	chr8_1:54084955-54084974	None:intergenic	30.0%
TAGAATAACGAATATACCAG+TGG	-	chr8_1:54085383-54085402	None:intergenic	30.0%
GACAACGCATAAAATATACA+AGG	+	chr8_1:54085625-54085644	Msa1200960:intron	30.0%
GCATAAAATATACAAGGTCT+GGG	+	chr8_1:54085631-54085650	Msa1200960:intron	30.0%
CATAAAATATACAAGGTCTG+GGG	+	chr8_1:54085632-54085651	Msa1200960:intron	30.0%
TCTCAATTTGCAAACAAACT+CGG	-	chr8_1:54086318-54086337	None:intergenic	30.0%
ATTTAGTCTGTGTCAAGTTT+AGG	-	chr8_1:54086577-54086596	None:intergenic	30.0%
AAATCGTATTCCCTGTTAAT+CGG	+	chr8_1:54086593-54086612	Msa1200960:intron	30.0%
CACCAAAAAAGATAAAATGG+TGG	-	chr8_1:54086659-54086678	None:intergenic	30.0%
CACCACCAAAAAAGATAAAA+TGG	-	chr8_1:54086662-54086681	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	54084906	54089684	54084906	ID=Msa1200960;Name=Msa1200960
chr8_1	mRNA	54084906	54089684	54084906	ID=Msa1200960-mRNA-1;Parent=Msa1200960;Name=Msa1200960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=32\|1\|1\|1\|1\|1\|3\|295\|322
chr8_1	exon	54084906	54085385	54084906	ID=Msa1200960-mRNA-1:exon:17340;Parent=Msa1200960-mRNA-1
chr8_1	exon	54087437	54087587	54087437	ID=Msa1200960-mRNA-1:exon:17341;Parent=Msa1200960-mRNA-1
chr8_1	exon	54089020	54089684	54089020	ID=Msa1200960-mRNA-1:exon:17342;Parent=Msa1200960-mRNA-1
chr8_1	five_prime_UTR	54084906	54084937	54084906	ID=Msa1200960-mRNA-1:five_prime_utr;Parent=Msa1200960-mRNA-1
chr8_1	CDS	54084938	54085385	54084938	ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1	CDS	54087437	54087587	54087437	ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1	CDS	54089020	54089389	54089020	ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1	three_prime_UTR	54089390	54089684	54089390	ID=Msa1200960-mRNA-1:three_prime_utr;Parent=Msa1200960-mRNA-1

Gene Sequence

>Msa1200960

ATGGCGAATATAAACCTTTCTTGGTTGATACTATGTTTACTACCTCTTTTTCTTGTAGCTAAAGCAGAACAATGTGGTAGTCAAGCTAATGGAGCTCTTTGTCCAAATGGGCTATGTTGTAGCAAATTTGGTTTTTGTGGTAGCACTGATCAATACTGTGGAGCTGGTTGTCAGAGCCAATGTAAATCTTCTCCAACACCGACACCATCAACACCAACACCTAGTACAGGTGGTGGTGGAGATGTTGGAAGTATTATTCCATCATCTTTGTTTGATCAAATGCTTAAATATCGAAATGATCAGCGTTGTGCTGGTCATGGATTTTATACCTACGATGGTTTCATTGCTGCCGCTAGATCTTTTAATGGATTTGGTACCACTGGTGATGATGCCACCCGTAAGAAGGAACTTGCTGCTTTTTTGGCACAAACTTCTCATGAAACCACTGGAGGGTGGCCAAGTGCACCAGACGGTCCATATGCGTGGGGATATTGCTTTGTCACCGAAAAGGATGCCCAAGGAGACTTTTGTACACCCGGAGATTGGCCATGTGCTCCTGGTAAAAGATACTATGGCAGAGGACCAATTCAACTCACTCACAATTACAATTACGGTCAAGCGGGTAAAGCCATTAATGAAGATTTAATAAACAATCCGGACCTAGTCTCCACAAACCCAACTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGCAAACAAGCCATCAAGCCATGATGTGATTACTGGAAGATGGAAGCCATCAGCTGCTGACAGCTCAGCAGGGCGGGTCCCCGGATACGGCGTGATCACCAATATAATCAATGGCGGGCTCGAATGCGGGAAAGGTCAGGATCCTAAAGTCGAGGATCGGGTCGGATTTTATAAAAGGTATTGTCAAATATTGGGAGTGAACCCCGGTGATAATTTGGATTGTAACAACCAAAGGCCATTTGCCTAA

Protein sequence

>Msa1200960

MANINLSWLILCLLPLFLVAKAEQCGSQANGALCPNGLCCSKFGFCGSTDQYCGAGCQSQCKSSPTPTPSTPTPSTGGGGDVGSIIPSSLFDQMLKYRNDQRCAGHGFYTYDGFIAAARSFNGFGTTGDDATRKKELAAFLAQTSHETTGGWPSAPDGPYAWGYCFVTEKDAQGDFCTPGDWPCAPGKRYYGRGPIQLTHNYNYGQAGKAINEDLINNPDLVSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWKPSAADSSAGRVPGYGVITNIINGGLECGKGQDPKVEDRVGFYKRYCQILGVNPGDNLDCNNQRPFA*