AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1200960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200960 MtrunA17_Chr8g0370821 96.273 322 10 1 1 322 12 331 0.0 637
Msa1200960 MtrunA17_Chr8g0370851 77.882 321 68 1 2 322 3 320 0.0 510
Msa1200960 MtrunA17_Chr8g0370831 83.498 303 37 1 20 322 20 309 7.34e-177 491
Msa1200960 MtrunA17_Chr3g0145981 62.422 322 106 2 1 321 24 331 3.21e-148 420
Msa1200960 MtrunA17_Chr7g0270841 51.653 242 115 1 82 321 36 277 8.64e-91 272
Msa1200960 MtrunA17_Chr2g0329791 38.558 319 143 11 1 315 13 282 1.03e-63 203
Msa1200960 MtrunA17_Chr2g0329781 39.404 302 135 10 18 315 6 263 1.33e-59 192
Msa1200960 MtrunA17_Chr7g0221751 40.083 242 134 4 91 321 69 310 3.35e-55 182
Msa1200960 MtrunA17_Chr1g0206111 38.843 242 137 4 91 321 72 313 1.85e-53 177
Msa1200960 MtrunA17_Chr2g0294721 38.272 243 138 5 91 321 65 307 1.74e-52 175
Msa1200960 MtrunA17_Chr7g0274181 56.604 53 23 0 10 62 6 58 6.71e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200960 AT3G12500.1 66.007 303 93 3 22 322 33 327 3.95e-141 402
Msa1200960 AT4G01700.1 54.733 243 108 1 82 322 38 280 6.47e-100 295
Msa1200960 AT1G02360.1 52.675 243 113 1 82 322 30 272 4.00e-95 283
Msa1200960 AT1G02360.3 52.675 243 113 1 82 322 82 324 9.68e-95 284
Msa1200960 AT1G02360.2 52.675 243 113 1 82 322 76 318 9.70e-95 284
Msa1200960 AT2G43620.1 39.185 319 135 13 9 315 12 283 3.21e-62 199
Msa1200960 AT2G43610.1 39.623 318 133 14 9 315 12 281 6.32e-61 196
Msa1200960 AT3G54420.1 36.392 316 147 8 3 315 9 273 1.14e-59 192
Msa1200960 AT2G43590.1 37.209 301 128 11 19 315 21 264 6.02e-57 185
Msa1200960 AT1G05850.1 37.603 242 140 4 91 321 69 310 1.76e-55 183
Msa1200960 AT1G05850.2 37.603 242 140 4 91 321 69 310 1.76e-55 183
Msa1200960 AT2G43570.1 35.873 315 139 10 9 315 18 277 4.79e-53 176
Msa1200960 AT3G16920.1 36.508 252 148 5 82 321 68 319 5.55e-52 174
Msa1200960 AT3G16920.2 36.508 252 148 5 82 321 92 343 9.75e-52 174
Msa1200960 AT2G43580.1 33.916 286 136 10 34 315 29 265 8.78e-46 156
Msa1200960 AT2G43600.1 32.812 320 161 13 1 315 3 273 2.82e-40 142
Msa1200960 AT2G43600.2 32.812 320 161 13 1 315 24 294 4.27e-40 142
Msa1200960 AT1G56680.1 32.063 315 160 13 9 315 12 280 7.46e-39 139
Msa1200960 AT1G56680.2 32.063 315 160 13 9 315 35 303 1.70e-38 138
Msa1200960 AT3G47540.1 27.381 252 124 11 69 315 17 214 7.03e-20 86.7
Msa1200960 AT3G47540.2 26.337 243 120 11 75 312 23 211 1.93e-16 78.6

Find 118 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGTATATATTTAAATTT+AGG 0.167094 8_1:-54089647 None:intergenic
TAAAAGGTATTGTCAAATAT+TGG 0.173231 8_1:+54089314 Msa1200960:CDS
GTTTATTAAATCTTCATTAA+TGG 0.182525 8_1:-54089049 None:intergenic
GGGCTATGTTGTAGCAAATT+TGG 0.190123 8_1:+54085046 Msa1200960:CDS
AGTGAACCCCGGTGATAATT+TGG 0.206260 8_1:+54089338 Msa1200960:CDS
TGGCGAATATAAACCTTTCT+TGG 0.278082 8_1:+54084939 Msa1200960:CDS
CGGATCTAGTGTGGGGCAAT+GGG 0.282525 8_1:+54089580 Msa1200960:three_prime_UTR
AATATAAAGTATAATAATAA+AGG 0.286460 8_1:+54089414 Msa1200960:three_prime_UTR
TCAAGACAGCTATATGGTTT+TGG 0.289257 8_1:+54089109 Msa1200960:CDS
TCAGCTGCTGACAGCTCAGC+AGG 0.291069 8_1:+54089192 Msa1200960:CDS
AAAAGGTATTGTCAAATATT+GGG 0.316123 8_1:+54089315 Msa1200960:CDS
CCGACCCGATCCTCGACTTT+AGG 0.318865 8_1:-54089285 None:intergenic
GAGCCCGCCATTGATTATAT+TGG 0.342820 8_1:-54089241 None:intergenic
TTGCTACAACATAGCCCATT+TGG 0.356076 8_1:-54085040 None:intergenic
ATTGGTGATCACGCCGTATC+CGG 0.356788 8_1:-54089223 None:intergenic
GTACTAGGTGTTGGTGTTGA+TGG 0.366605 8_1:-54085142 None:intergenic
GTTCACAGCAATTACAATTA+CGG 0.372870 8_1:+54089012 Msa1200960:intron
TCAAGCCATGATGTGATTAC+TGG 0.373764 8_1:+54089156 Msa1200960:CDS
TATCATTCAAGACAGCTATA+TGG 0.380021 8_1:+54089103 Msa1200960:CDS
TCTTACTGAGTGAGTTGAAT+TGG 0.382364 8_1:-54087571 None:intergenic
TCGCTTAGGCAAATGGCCTT+TGG 0.383815 8_1:-54089371 None:intergenic
TGCTGACAGCTCAGCAGGGC+GGG 0.391094 8_1:+54089197 Msa1200960:CDS
AATGGAGCTCTTTGTCCAAA+TGG 0.398942 8_1:+54085025 Msa1200960:CDS
ACGGATCTAGTGTGGGGCAA+TGG 0.400946 8_1:+54089579 Msa1200960:three_prime_UTR
TTGATGGCTTGTTTGCTTGA+GGG 0.404442 8_1:-54089137 None:intergenic
AAGCAGCAAGTTCCTTCTTA+CGG 0.405236 8_1:-54085333 None:intergenic
AGCAGCAAGTTCCTTCTTAC+GGG 0.405858 8_1:-54085332 None:intergenic
GTAATCACATCATGGCTTGA+TGG 0.406185 8_1:-54089153 None:intergenic
AAGCAATATCCCCACGCATA+TGG 0.409090 8_1:-54087463 None:intergenic
AATCTTCTTGCTAAATAAAA+CGG 0.414743 8_1:+54089468 Msa1200960:three_prime_UTR
AGCTCAGCAGGGCGGGTCCC+CGG 0.425346 8_1:+54089204 Msa1200960:CDS
TTGGTGATCACGCCGTATCC+GGG 0.425903 8_1:-54089222 None:intergenic
CTTGATGGCTTGTTTGCTTG+AGG 0.431719 8_1:-54089138 None:intergenic
TCTCCACCACCACCTGTACT+AGG 0.439639 8_1:-54085157 None:intergenic
GGTGTTGATGGTGTCGGTGT+TGG 0.447435 8_1:-54085130 None:intergenic
CGGGTGTACAAAAGTCTCCT+TGG 0.447763 8_1:-54087504 None:intergenic
TGATGGCTTGTTTGCTTGAG+GGG 0.449557 8_1:-54089136 None:intergenic
GCTCCTGGTAAAAGATACTA+TGG 0.449925 8_1:+54087541 Msa1200960:CDS
CTGTCTTGAATGATACAGTT+GGG 0.458496 8_1:-54089095 None:intergenic
AGGAGCACATGGCCAATCTC+CGG 0.459259 8_1:-54087524 None:intergenic
GCTCGAATGCGGGAAAGGTC+AGG 0.463433 8_1:+54089260 Msa1200960:CDS
TTTAATGGATTTGGTACCAC+TGG 0.465473 8_1:+54085298 Msa1200960:CDS
CAGTTGGGTTTGTGGAGACT+AGG 0.466628 8_1:-54089080 None:intergenic
ATATAAAGTATAATAATAAA+GGG 0.467760 8_1:+54089415 Msa1200960:three_prime_UTR
GGGTTTGTGGAGACTAGGTC+CGG 0.468156 8_1:-54089075 None:intergenic
GCTGAGCTGTCAGCAGCTGA+TGG 0.470111 8_1:-54089189 None:intergenic
AGGTACTTCGCTTAGGCAAA+TGG 0.472357 8_1:-54089378 None:intergenic
TCAATGGCGGGCTCGAATGC+GGG 0.473463 8_1:+54089250 Msa1200960:CDS
TGAAGATTTAATAAACAATC+CGG 0.474979 8_1:+54089056 Msa1200960:CDS
ACAGGTGGTGGTGGAGATGT+TGG 0.475782 8_1:+54085163 Msa1200960:CDS
GGATCCTAAAGTCGAGGATC+GGG 0.481097 8_1:+54089281 Msa1200960:CDS
CAATGTGGTAGTCAAGCTAA+TGG 0.481274 8_1:+54085007 Msa1200960:CDS
GAATGATACAGTTGGGTTTG+TGG 0.486901 8_1:-54089088 None:intergenic
CCCCACGCATATGGACCGTC+TGG 0.489862 8_1:-54087454 None:intergenic
CGAAATGATCAGCGTTGTGC+TGG 0.490425 8_1:+54085229 Msa1200960:CDS
ATGGAGCTCTTTGTCCAAAT+GGG 0.497777 8_1:+54085026 Msa1200960:CDS
GGGTGTACAAAAGTCTCCTT+GGG 0.500306 8_1:-54087503 None:intergenic
ATCAATGGCGGGCTCGAATG+CGG 0.502650 8_1:+54089249 Msa1200960:CDS
TTATATTACAACATTAACAT+AGG 0.506414 8_1:-54089398 None:intergenic
AACATAGTATCAACCAAGAA+AGG 0.507901 8_1:-54084952 None:intergenic
GGAGCACATGGCCAATCTCC+GGG 0.508453 8_1:-54087523 None:intergenic
TATGGACCGTCTGGTGCACT+TGG 0.509398 8_1:-54087445 None:intergenic
GGCGGGCTCGAATGCGGGAA+AGG 0.510656 8_1:+54089255 Msa1200960:CDS
GGAGATTGGCCATGTGCTCC+TGG 0.516012 8_1:+54087526 Msa1200960:CDS
ATATTGCTTTGTCACCGAAA+AGG 0.520899 8_1:+54087477 Msa1200960:CDS
GTTACAATCCAAATTATCAC+CGG 0.522554 8_1:-54089346 None:intergenic
ATCTTCCAGTAATCACATCA+TGG 0.525180 8_1:-54089161 None:intergenic
TTAACATAGGTACTTCGCTT+AGG 0.525544 8_1:-54089385 None:intergenic
ATTTGGATTGTAACAACCAA+AGG 0.532242 8_1:+54089355 Msa1200960:CDS
ATTTGATCAAACAAAGATGA+TGG 0.537556 8_1:-54085196 None:intergenic
GTGATCACCAATATAATCAA+TGG 0.543450 8_1:+54089234 Msa1200960:CDS
CACCAGACGGTCCATATGCG+TGG 0.545072 8_1:+54087452 Msa1200960:CDS
TGATGATGCCACCCGTAAGA+AGG 0.549932 8_1:+54085321 Msa1200960:CDS
GCTGTCTTGAATGATACAGT+TGG 0.551346 8_1:-54089096 None:intergenic
CCACCACCTGTACTAGGTGT+TGG 0.552714 8_1:-54085151 None:intergenic
AGGATCCTAAAGTCGAGGAT+CGG 0.553009 8_1:+54089280 Msa1200960:CDS
ATGATGTGATTACTGGAAGA+TGG 0.555867 8_1:+54089163 Msa1200960:CDS
ACTGATCAATACTGTGGAGC+TGG 0.559980 8_1:+54085082 Msa1200960:CDS
GATCAGCGTTGTGCTGGTCA+TGG 0.565496 8_1:+54085235 Msa1200960:CDS
AATTACAATTACGGTCAAGC+GGG 0.575378 8_1:+54089021 Msa1200960:CDS
ACACCTAGTACAGGTGGTGG+TGG 0.583434 8_1:+54085154 Msa1200960:CDS
ATGAGGCACGGATCTAGTGT+GGG 0.584390 8_1:+54089572 Msa1200960:three_prime_UTR
AGCAAGTTCCTTCTTACGGG+TGG 0.585203 8_1:-54085329 None:intergenic
CTGCTGACAGCTCAGCAGGG+CGG 0.585439 8_1:+54089196 Msa1200960:CDS
CAAATATTGGGAGTGAACCC+CGG 0.585803 8_1:+54089327 Msa1200960:CDS
ACCAGACGGTCCATATGCGT+GGG 0.586591 8_1:+54087453 Msa1200960:CDS
CAGCTGCTGACAGCTCAGCA+GGG 0.590641 8_1:+54089193 Msa1200960:CDS
GATGAGGCACGGATCTAGTG+TGG 0.598073 8_1:+54089571 Msa1200960:three_prime_UTR
TTACAATCCAAATTATCACC+GGG 0.600890 8_1:-54089345 None:intergenic
GGTGTTGGTGTTGATGGTGT+CGG 0.601186 8_1:-54085136 None:intergenic
GGTAAAAGATACTATGGCAG+AGG 0.603766 8_1:+54087547 Msa1200960:CDS
TCAACACCAACACCTAGTAC+AGG 0.607089 8_1:+54085145 Msa1200960:CDS
CAATTACAATTACGGTCAAG+CGG 0.608754 8_1:+54089020 Msa1200960:CDS
TCACCAATATAATCAATGGC+GGG 0.615650 8_1:+54089238 Msa1200960:CDS
AATACACGTGTGGAGGCAAG+TGG 0.617596 8_1:-54089614 None:intergenic
CAAACTTCTCATGAAACCAC+TGG 0.618506 8_1:+54085364 Msa1200960:CDS
ATCACCAATATAATCAATGG+CGG 0.618901 8_1:+54089237 Msa1200960:CDS
TGGTGATCACGCCGTATCCG+GGG 0.619248 8_1:-54089221 None:intergenic
AAAATACAATACACGTGTGG+AGG 0.627022 8_1:-54089621 None:intergenic
CCTAAAGTCGAGGATCGGGT+CGG 0.630158 8_1:+54089285 Msa1200960:CDS
CCAACACCTAGTACAGGTGG+TGG 0.640055 8_1:+54085151 Msa1200960:CDS
GGATCTAGTGTGGGGCAATG+GGG 0.641742 8_1:+54089581 Msa1200960:three_prime_UTR
AAATCCATTAAAAGATCTAG+CGG 0.646204 8_1:-54085287 None:intergenic
GTCACCGAAAAGGATGCCCA+AGG 0.648696 8_1:+54087487 Msa1200960:CDS
TTTATGGACATGCAGGAGGG+TGG 0.652535 8_1:+54087422 Msa1200960:intron
GTGTTGGAGAAGATTTACAT+TGG 0.657553 8_1:-54085114 None:intergenic
AGGTCAGGATCCTAAAGTCG+AGG 0.659514 8_1:+54089275 Msa1200960:CDS
GGGTGGCCAAGTGCACCAGA+CGG 0.665375 8_1:+54087439 Msa1200960:CDS
ACACCAACACCTAGTACAGG+TGG 0.675313 8_1:+54085148 Msa1200960:CDS
AGGTACGATACGATGAGGCA+CGG 0.687649 8_1:+54089560 Msa1200960:three_prime_UTR
TGAGGCACGGATCTAGTGTG+GGG 0.689762 8_1:+54089573 Msa1200960:three_prime_UTR
ACGGGTGGCATCATCACCAG+TGG 0.693098 8_1:-54085314 None:intergenic
ATACACGTGTGGAGGCAAGT+GGG 0.725878 8_1:-54089613 None:intergenic
TACAATCCAAATTATCACCG+GGG 0.731031 8_1:-54089344 None:intergenic
GGTAGCACTGATCAATACTG+TGG 0.734247 8_1:+54085076 Msa1200960:CDS
CGTGCAGGTACGATACGATG+AGG 0.738114 8_1:+54089555 Msa1200960:three_prime_UTR
GTAGCTAAAGCAGAACAATG+TGG 0.744595 8_1:+54084992 Msa1200960:CDS
GGCAGCAATGAAACCATCGT+AGG 0.758983 8_1:-54085266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTATTTAGATAAT+TGG + chr8_1:54085400-54085419 Msa1200960:intron 10.0%
!!! CAAAATTCATTAAATATTTT+AGG - chr8_1:54087044-54087063 None:intergenic 10.0%
!!! CTAAAATATTTAATGAATTT+TGG + chr8_1:54087042-54087061 Msa1200960:intron 10.0%
!!! TTATAAATTCAGTTTTTTTT+AGG + chr8_1:54087078-54087097 Msa1200960:intron 10.0%
!!! TATAAATTCAGTTTTTTTTA+GGG + chr8_1:54087079-54087098 Msa1200960:intron 10.0%
!! AAATAAATATTTACCATTTA+TGG - chr8_1:54088752-54088771 None:intergenic 10.0%
!! ATTTAATTATAATGAGAGAA+AGG + chr8_1:54085480-54085499 Msa1200960:intron 15.0%
!!! GTATTAAGATAACTTTTTTT+TGG - chr8_1:54085676-54085695 None:intergenic 15.0%
!! TCAAGTTAAATATATTAAAG+TGG - chr8_1:54086174-54086193 None:intergenic 15.0%
!! ACATATTAATTAACTTAAGT+AGG + chr8_1:54086429-54086448 Msa1200960:intron 15.0%
!!! TTTTTTGCTAATAGAAATTT+AGG + chr8_1:54086821-54086840 Msa1200960:intron 15.0%
!!! TTTTTGCTAATAGAAATTTA+GGG + chr8_1:54086822-54086841 Msa1200960:intron 15.0%
!!! ATTGATAATAATGCTTAAAA+AGG - chr8_1:54088559-54088578 None:intergenic 15.0%
!!! ATTAATTTTCAATCTCTAAA+AGG + chr8_1:54088778-54088797 Msa1200960:intron 15.0%
!! GTTTATTAAATCTTCATTAA+TGG - chr8_1:54089052-54089071 None:intergenic 15.0%
!! TTATATTACAACATTAACAT+AGG - chr8_1:54089401-54089420 None:intergenic 15.0%
!!! TGGTTATAGTTTGTTTTTTT+TGG - chr8_1:54085849-54085868 None:intergenic 20.0%
!!! TACTTTTTTTTTTTTGGTAG+TGG - chr8_1:54085918-54085937 None:intergenic 20.0%
!! TGTGTAAGATTAATTTACTT+GGG - chr8_1:54086007-54086026 None:intergenic 20.0%
!! TTGTGTAAGATTAATTTACT+TGG - chr8_1:54086008-54086027 None:intergenic 20.0%
!! TCTAATTCGATTAGATAAAA+TGG - chr8_1:54086747-54086766 None:intergenic 20.0%
!! ATATAAAATCTTCATTGTCT+AGG - chr8_1:54086867-54086886 None:intergenic 20.0%
!! TAGTAAAAAACATGTATGTT+TGG - chr8_1:54086951-54086970 None:intergenic 20.0%
!! ACTGAATTTATAAATCTGTA+CGG - chr8_1:54087071-54087090 None:intergenic 20.0%
!!! TTGATCTCTCTTTTTTTTTA+GGG + chr8_1:54087126-54087145 Msa1200960:intron 20.0%
!! ATAAAATTAACTGGTGTTTA+TGG + chr8_1:54087406-54087425 Msa1200960:intron 20.0%
!!! GTATTTTAATTATAAGTCAG+TGG - chr8_1:54087997-54088016 None:intergenic 20.0%
!! TATAATTAAAATACGCTCAA+CGG + chr8_1:54088003-54088022 Msa1200960:intron 20.0%
!! TAACAAAAATCACATGTATT+AGG + chr8_1:54088631-54088650 Msa1200960:intron 20.0%
!! AACAAAAATCACATGTATTA+GGG + chr8_1:54088632-54088651 Msa1200960:intron 20.0%
!!! AATGACTACTTTAAGAAAAA+TGG - chr8_1:54088877-54088896 None:intergenic 20.0%
!!! TTTATGACTATTTTTTATGC+TGG + chr8_1:54088906-54088925 Msa1200960:intron 20.0%
!!! TTGTGACAATATTTAACTTA+TGG + chr8_1:54088937-54088956 Msa1200960:intron 20.0%
!! TGAAGATTTAATAAACAATC+CGG + chr8_1:54089056-54089075 Msa1200960:CDS 20.0%
!!! TAAAAGGTATTGTCAAATAT+TGG + chr8_1:54089314-54089333 Msa1200960:CDS 20.0%
!!! AAAAGGTATTGTCAAATATT+GGG + chr8_1:54089315-54089334 Msa1200960:CDS 20.0%
!! AATCTTCTTGCTAAATAAAA+CGG + chr8_1:54089468-54089487 Msa1200960:three_prime_UTR 20.0%
! ATTTGATCAAACAAAGATGA+TGG - chr8_1:54085199-54085218 None:intergenic 25.0%
! AAATCCATTAAAAGATCTAG+CGG - chr8_1:54085290-54085309 None:intergenic 25.0%
! AACTGTATTCTATGTAAAGT+AGG - chr8_1:54085431-54085450 None:intergenic 25.0%
! ATAATGAGAGAAAGGAAAAA+TGG + chr8_1:54085488-54085507 Msa1200960:intron 25.0%
!!! AGATAACTTTTTTTTGGTAG+TGG - chr8_1:54085670-54085689 None:intergenic 25.0%
!!! TAGTTTGTTTTTTTTGGTAG+TGG - chr8_1:54085843-54085862 None:intergenic 25.0%
! TCATATCATATGTGATTCAT+TGG + chr8_1:54086065-54086084 Msa1200960:intron 25.0%
!! AGTAGGTTGAAAAAAAAAGT+AGG + chr8_1:54086446-54086465 Msa1200960:intron 25.0%
! ATTAGTAGGAAGAATATACT+GGG - chr8_1:54086620-54086639 None:intergenic 25.0%
! AATTAGTAGGAAGAATATAC+TGG - chr8_1:54086621-54086640 None:intergenic 25.0%
!! TAATTAGCTTCACAATTAGT+AGG - chr8_1:54086634-54086653 None:intergenic 25.0%
! ACCAAAAAAGATAAAATGGT+GGG - chr8_1:54086658-54086677 None:intergenic 25.0%
! ATTCGATTAGATAAAATGGT+TGG - chr8_1:54086743-54086762 None:intergenic 25.0%
!!! CTTGATCTCTCTTTTTTTTT+AGG + chr8_1:54087125-54087144 Msa1200960:intron 25.0%
!!! TGATCTCTCTTTTTTTTTAG+GGG + chr8_1:54087127-54087146 Msa1200960:intron 25.0%
!!! ACATGGTTAGATTTTTAGAT+GGG - chr8_1:54087631-54087650 None:intergenic 25.0%
!!! AACATGGTTAGATTTTTAGA+TGG - chr8_1:54087632-54087651 None:intergenic 25.0%
! TTTCTCAAAGCATAATAACA+TGG - chr8_1:54087648-54087667 None:intergenic 25.0%
!!! CCTAAAAGTTGTTCTAAAAA+TGG - chr8_1:54087685-54087704 None:intergenic 25.0%
!!! CCATTTTTAGAACAACTTTT+AGG + chr8_1:54087682-54087701 Msa1200960:intron 25.0%
! AAAAATAGAGAGAAAAAGAG+AGG + chr8_1:54087727-54087746 Msa1200960:intron 25.0%
!! CTTTTCCTTAGCTATATTAA+TGG + chr8_1:54087836-54087855 Msa1200960:intron 25.0%
! GATGTTCTTATAAAGAATGA+CGG - chr8_1:54088611-54088630 None:intergenic 25.0%
!!! TGTCTTTAGAACACATTTTA+AGG + chr8_1:54088723-54088742 Msa1200960:intron 25.0%
!!! CATTTTAAGGATTCCATAAA+TGG + chr8_1:54088736-54088755 Msa1200960:intron 25.0%
! TTAAAAATACAATACACGTG+TGG - chr8_1:54089627-54089646 None:intergenic 25.0%
!!! TATTCGCCATTTTTTAAGAG+TGG - chr8_1:54084928-54084947 None:intergenic 30.0%
AACATAGTATCAACCAAGAA+AGG - chr8_1:54084955-54084974 None:intergenic 30.0%
!!! TGTAGCAAATTTGGTTTTTG+TGG + chr8_1:54085055-54085074 Msa1200960:CDS 30.0%
!!! GCTAGATCTTTTAATGGATT+TGG + chr8_1:54085289-54085308 Msa1200960:CDS 30.0%
TAGAATAACGAATATACCAG+TGG - chr8_1:54085383-54085402 None:intergenic 30.0%
GACAACGCATAAAATATACA+AGG + chr8_1:54085625-54085644 Msa1200960:intron 30.0%
GCATAAAATATACAAGGTCT+GGG + chr8_1:54085631-54085650 Msa1200960:intron 30.0%
CATAAAATATACAAGGTCTG+GGG + chr8_1:54085632-54085651 Msa1200960:intron 30.0%
! ACTCATTGGTTATAGTTTGT+TGG - chr8_1:54085700-54085719 None:intergenic 30.0%
! ACTCATTGGTTATAGTTTGT+TGG - chr8_1:54085700-54085719 None:intergenic 30.0%
! ACTCATTGGTTATAGTTTGT+TGG - chr8_1:54085700-54085719 None:intergenic 30.0%
TCTCAATTTGCAAACAAACT+CGG - chr8_1:54086318-54086337 None:intergenic 30.0%
! AAAAAGTAGGTCGACTTAAT+AGG + chr8_1:54086459-54086478 Msa1200960:intron 30.0%
ATTTAGTCTGTGTCAAGTTT+AGG - chr8_1:54086577-54086596 None:intergenic 30.0%
AAATCGTATTCCCTGTTAAT+CGG + chr8_1:54086593-54086612 Msa1200960:intron 30.0%
! ACCCACCATTTTATCTTTTT+TGG + chr8_1:54086654-54086673 Msa1200960:intron 30.0%
CACCAAAAAAGATAAAATGG+TGG - chr8_1:54086659-54086678 None:intergenic 30.0%
!!! CACCATTTTATCTTTTTTGG+TGG + chr8_1:54086657-54086676 Msa1200960:intron 30.0%
CACCACCAAAAAAGATAAAA+TGG - chr8_1:54086662-54086681 None:intergenic 30.0%
!!! TTATCTTTTTTGGTGGTGTT+TGG + chr8_1:54086664-54086683 Msa1200960:intron 30.0%
!!! TATCTTTTTTGGTGGTGTTT+GGG + chr8_1:54086665-54086684 Msa1200960:intron 30.0%
TATCAATTGAGTTAAGCTCA+CGG + chr8_1:54086710-54086729 Msa1200960:intron 30.0%
GATTAGATAAAATGGTTGGT+TGG - chr8_1:54086739-54086758 None:intergenic 30.0%
!! AGAAATTTAGGGTATTGAGA+TGG + chr8_1:54086833-54086852 Msa1200960:intron 30.0%
! CCAGTTAATTTTATGCTCTA+TGG - chr8_1:54087400-54087419 None:intergenic 30.0%
CCATAGAGCATAAAATTAAC+TGG + chr8_1:54087397-54087416 Msa1200960:intron 30.0%
! GTTTGATTGTTTGAAATGCT+AGG - chr8_1:54087605-54087624 None:intergenic 30.0%
!! CATGGTTAGATTTTTAGATG+GGG - chr8_1:54087630-54087649 None:intergenic 30.0%
TCCTTAGCTATATTAATGGA+TGG + chr8_1:54087840-54087859 Msa1200960:intron 30.0%
ACCATCCATTAATATAGCTA+AGG - chr8_1:54087844-54087863 None:intergenic 30.0%
! AGCTTTCTCTTTTATGTCAT+TGG - chr8_1:54088104-54088123 None:intergenic 30.0%
ACATAAAAGAGAAAGCTTAG+AGG + chr8_1:54088107-54088126 Msa1200960:intron 30.0%
ACCTCATATAAACTTCAAGA+GGG - chr8_1:54088392-54088411 None:intergenic 30.0%
ATTAAGAGAGAGAAGATGAT+TGG + chr8_1:54088470-54088489 Msa1200960:intron 30.0%
!! CTTAAAAAGGTGTCATCTAA+TGG - chr8_1:54088546-54088565 None:intergenic 30.0%
! TTCTTATAAAGAATGACGGA+GGG - chr8_1:54088607-54088626 None:intergenic 30.0%
! CATGTATTAGGGAAAGTTTT+AGG + chr8_1:54088643-54088662 Msa1200960:intron 30.0%
! TATGTGTGAGTGTTACTATA+TGG + chr8_1:54088686-54088705 Msa1200960:intron 30.0%
! ATGTGTGAGTGTTACTATAT+GGG + chr8_1:54088687-54088706 Msa1200960:intron 30.0%
! ACTGTTTTATAGTGCTTTAG+TGG + chr8_1:54088968-54088987 Msa1200960:intron 30.0%
ATTGTAATTGCTGTGAACAA+GGG - chr8_1:54089010-54089029 None:intergenic 30.0%
AATTGTAATTGCTGTGAACA+AGG - chr8_1:54089011-54089030 None:intergenic 30.0%
GTTCACAGCAATTACAATTA+CGG + chr8_1:54089012-54089031 Msa1200960:intron 30.0%
TATCATTCAAGACAGCTATA+TGG + chr8_1:54089103-54089122 Msa1200960:CDS 30.0%
GTGATCACCAATATAATCAA+TGG + chr8_1:54089234-54089253 Msa1200960:CDS 30.0%
ATCACCAATATAATCAATGG+CGG + chr8_1:54089237-54089256 Msa1200960:CDS 30.0%
TTACAATCCAAATTATCACC+GGG - chr8_1:54089348-54089367 None:intergenic 30.0%
GTTACAATCCAAATTATCAC+CGG - chr8_1:54089349-54089368 None:intergenic 30.0%
ATTTGGATTGTAACAACCAA+AGG + chr8_1:54089355-54089374 Msa1200960:CDS 30.0%
!!! CCATTTTTTAAGAGTGGAGT+CGG - chr8_1:54084922-54084941 None:intergenic 35.0%
TGGCGAATATAAACCTTTCT+TGG + chr8_1:54084939-54084958 Msa1200960:CDS 35.0%
GCTTTAGCTACAAGAAAAAG+AGG - chr8_1:54084983-54085002 None:intergenic 35.0%
GTGTTGGAGAAGATTTACAT+TGG - chr8_1:54085117-54085136 None:intergenic 35.0%
! CATGGATTTTATACCTACGA+TGG + chr8_1:54085253-54085272 Msa1200960:CDS 35.0%
!! TTTAATGGATTTGGTACCAC+TGG + chr8_1:54085298-54085317 Msa1200960:CDS 35.0%
CGCATAAAATATACAAGGTC+TGG + chr8_1:54085630-54085649 Msa1200960:intron 35.0%
!!! AACTTTTTTTTGGTAGTGGC+CGG - chr8_1:54085666-54085685 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_1:54085714-54085733 None:intergenic 35.0%
!! ATAGTTTGTTGGCGTATAAG+TGG - chr8_1:54085776-54085795 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_1:54085714-54085733 None:intergenic 35.0%
!!! TTGTTTTTTTTGGTAGTGGC+CGG - chr8_1:54085839-54085858 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_1:54085714-54085733 None:intergenic 35.0%
AAAATGGAGCACAAACTCAT+TGG - chr8_1:54085714-54085733 None:intergenic 35.0%
! CTCAAGCTTCTTTTCATCAT+TGG - chr8_1:54086104-54086123 None:intergenic 35.0%
AATCGTATTCCCTGTTAATC+GGG + chr8_1:54086594-54086613 Msa1200960:intron 35.0%
!!! ATCTTTTTTGGTGGTGTTTG+GGG + chr8_1:54086666-54086685 Msa1200960:intron 35.0%
ATCAATTGAGTTAAGCTCAC+GGG + chr8_1:54086711-54086730 Msa1200960:intron 35.0%
ATATTGCTTTGTCACCGAAA+AGG + chr8_1:54087477-54087496 Msa1200960:CDS 35.0%
! TCTTACTGAGTGAGTTGAAT+TGG - chr8_1:54087574-54087593 None:intergenic 35.0%
CACACACACATTTACTAACT+CGG - chr8_1:54087756-54087775 None:intergenic 35.0%
! TGAAGTGTATATTGGTGGAT+GGG - chr8_1:54087880-54087899 None:intergenic 35.0%
ATGAAGTGTATATTGGTGGA+TGG - chr8_1:54087881-54087900 None:intergenic 35.0%
CACCAATATACACTTCATGT+GGG + chr8_1:54087883-54087902 Msa1200960:intron 35.0%
AACCCACATGAAGTGTATAT+TGG - chr8_1:54087888-54087907 None:intergenic 35.0%
AAATACTAAAATACCCCCAG+CGG + chr8_1:54087961-54087980 Msa1200960:intron 35.0%
CTTGTGTTTCCAAGACATAT+TGG + chr8_1:54088059-54088078 Msa1200960:intron 35.0%
TTCTGACATCCAATATGTCT+TGG - chr8_1:54088071-54088090 None:intergenic 35.0%
AGAGTGAGATTACAATGAGA+AGG + chr8_1:54088238-54088257 Msa1200960:intron 35.0%
ACCCTCTTGAAGTTTATATG+AGG + chr8_1:54088388-54088407 Msa1200960:intron 35.0%
CACCTCATATAAACTTCAAG+AGG - chr8_1:54088393-54088412 None:intergenic 35.0%
CTCTTGAAGTTTATATGAGG+TGG + chr8_1:54088391-54088410 Msa1200960:intron 35.0%
TGAAGTTTATATGAGGTGGA+TGG + chr8_1:54088395-54088414 Msa1200960:intron 35.0%
GAAGTTTATATGAGGTGGAT+GGG + chr8_1:54088396-54088415 Msa1200960:intron 35.0%
AAGTTTATATGAGGTGGATG+GGG + chr8_1:54088397-54088416 Msa1200960:intron 35.0%
TCATCACTTGATACCAAACA+TGG + chr8_1:54088430-54088449 Msa1200960:intron 35.0%
ATGATTGGATTGAACAGATG+CGG + chr8_1:54088485-54088504 Msa1200960:intron 35.0%
GTTCTTATAAAGAATGACGG+AGG - chr8_1:54088608-54088627 None:intergenic 35.0%
CAATTACAATTACGGTCAAG+CGG + chr8_1:54089020-54089039 Msa1200960:CDS 35.0%
AATTACAATTACGGTCAAGC+GGG + chr8_1:54089021-54089040 Msa1200960:CDS 35.0%
CTGTCTTGAATGATACAGTT+GGG - chr8_1:54089098-54089117 None:intergenic 35.0%
! TCAAGACAGCTATATGGTTT+TGG + chr8_1:54089109-54089128 Msa1200960:CDS 35.0%
ATCTTCCAGTAATCACATCA+TGG - chr8_1:54089164-54089183 None:intergenic 35.0%
ATGATGTGATTACTGGAAGA+TGG + chr8_1:54089163-54089182 Msa1200960:CDS 35.0%
TCACCAATATAATCAATGGC+GGG + chr8_1:54089238-54089257 Msa1200960:CDS 35.0%
! ATCGGGTCGGATTTTATAAA+AGG + chr8_1:54089298-54089317 Msa1200960:CDS 35.0%
TACAATCCAAATTATCACCG+GGG - chr8_1:54089347-54089366 None:intergenic 35.0%
TTAACATAGGTACTTCGCTT+AGG - chr8_1:54089388-54089407 None:intergenic 35.0%
AAAATACAATACACGTGTGG+AGG - chr8_1:54089624-54089643 None:intergenic 35.0%
!! TTTTAAGAGTGGAGTCGGTT+TGG - chr8_1:54084917-54084936 None:intergenic 40.0%
CCGACTCCACTCTTAAAAAA+TGG + chr8_1:54084919-54084938 Msa1200960:exon 40.0%
GTAGCTAAAGCAGAACAATG+TGG + chr8_1:54084992-54085011 Msa1200960:CDS 40.0%
CAATGTGGTAGTCAAGCTAA+TGG + chr8_1:54085007-54085026 Msa1200960:CDS 40.0%
AATGGAGCTCTTTGTCCAAA+TGG + chr8_1:54085025-54085044 Msa1200960:CDS 40.0%
ATGGAGCTCTTTGTCCAAAT+GGG + chr8_1:54085026-54085045 Msa1200960:CDS 40.0%
TTGCTACAACATAGCCCATT+TGG - chr8_1:54085043-54085062 None:intergenic 40.0%
GGGCTATGTTGTAGCAAATT+TGG + chr8_1:54085046-54085065 Msa1200960:CDS 40.0%
AAGCAGCAAGTTCCTTCTTA+CGG - chr8_1:54085336-54085355 None:intergenic 40.0%
!!! GAAGGAACTTGCTGCTTTTT+TGG + chr8_1:54085339-54085358 Msa1200960:CDS 40.0%
CAAACTTCTCATGAAACCAC+TGG + chr8_1:54085364-54085383 Msa1200960:CDS 40.0%
! TGAGTTTAGCTCAGTTGGTT+GGG + chr8_1:54085603-54085622 Msa1200960:intron 40.0%
!!! ACTTTTTTTTGGTAGTGGCC+GGG - chr8_1:54085665-54085684 None:intergenic 40.0%
GGGTTTGAAGAGCTTCAAAA+TGG - chr8_1:54085730-54085749 None:intergenic 40.0%
!!! TTTTGAAGCTCTTCAAACCC+CGG + chr8_1:54085730-54085749 Msa1200960:intron 40.0%
GGGTTTGAAGAGCTTCAAAA+TGG - chr8_1:54085730-54085749 None:intergenic 40.0%
!!! TTTTGAAGCTCTTCAAACCC+CGG + chr8_1:54085730-54085749 Msa1200960:intron 40.0%
!!! TGTTTTTTTTGGTAGTGGCC+GGG - chr8_1:54085838-54085857 None:intergenic 40.0%
GGGTTTGAAGAGCTTCAAAA+TGG - chr8_1:54085730-54085749 None:intergenic 40.0%
!!! TTTTGAAGCTCTTCAAACCC+CGG + chr8_1:54085730-54085749 Msa1200960:intron 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+CGG - chr8_1:54085912-54085931 None:intergenic 40.0%
CTTGGGACAAAGCTTCAAAA+TGG - chr8_1:54085990-54086009 None:intergenic 40.0%
TCAATTGAGTTAAGCTCACG+GGG + chr8_1:54086712-54086731 Msa1200960:intron 40.0%
!! TTAGGGTATTGAGATGGACT+AGG + chr8_1:54086839-54086858 Msa1200960:intron 40.0%
!! TAGGGTATTGAGATGGACTA+GGG + chr8_1:54086840-54086859 Msa1200960:intron 40.0%
CATGTATGTTTGGACTCAGA+GGG - chr8_1:54086941-54086960 None:intergenic 40.0%
ACATGTATGTTTGGACTCAG+AGG - chr8_1:54086942-54086961 None:intergenic 40.0%
! CCATGAAACCACACTTTTGT+CGG + chr8_1:54087278-54087297 Msa1200960:intron 40.0%
! ACACTTTTGTCGGTAAGTGT+CGG + chr8_1:54087288-54087307 Msa1200960:intron 40.0%
!! TATCTTTTACCAGGAGCACA+TGG - chr8_1:54087538-54087557 None:intergenic 40.0%
GCTCCTGGTAAAAGATACTA+TGG + chr8_1:54087541-54087560 Msa1200960:CDS 40.0%
! CTGCCATAGTATCTTTTACC+AGG - chr8_1:54087547-54087566 None:intergenic 40.0%
GGTAAAAGATACTATGGCAG+AGG + chr8_1:54087547-54087566 Msa1200960:CDS 40.0%
!! GGTTAGATTTTTAGATGGGG+TGG - chr8_1:54087627-54087646 None:intergenic 40.0%
CCACATGAAGTGTATATTGG+TGG - chr8_1:54087885-54087904 None:intergenic 40.0%
CCACCAATATACACTTCATG+TGG + chr8_1:54087882-54087901 Msa1200960:intron 40.0%
AGAGGAGAAATCAAGAGAGA+GGG - chr8_1:54088347-54088366 None:intergenic 40.0%
TTGATTTCTCCTCTCTCTCT+TGG + chr8_1:54088353-54088372 Msa1200960:intron 40.0%
ATACCAAACATGGAGAGAGT+GGG + chr8_1:54088440-54088459 Msa1200960:intron 40.0%
GAATGATACAGTTGGGTTTG+TGG - chr8_1:54089091-54089110 None:intergenic 40.0%
GCTGTCTTGAATGATACAGT+TGG - chr8_1:54089099-54089118 None:intergenic 40.0%
!! TTGATGGCTTGTTTGCTTGA+GGG - chr8_1:54089140-54089159 None:intergenic 40.0%
GTAATCACATCATGGCTTGA+TGG - chr8_1:54089156-54089175 None:intergenic 40.0%
TCAAGCCATGATGTGATTAC+TGG + chr8_1:54089156-54089175 Msa1200960:CDS 40.0%
!! GGTAGCACTGATCAATACTG+TGG + chr8_1:54085076-54085095 Msa1200960:CDS 45.0%
ACTGATCAATACTGTGGAGC+TGG + chr8_1:54085082-54085101 Msa1200960:CDS 45.0%
!! GTACTAGGTGTTGGTGTTGA+TGG - chr8_1:54085145-54085164 None:intergenic 45.0%
TCAACACCAACACCTAGTAC+AGG + chr8_1:54085145-54085164 Msa1200960:CDS 45.0%
! GCTGCCGCTAGATCTTTTAA+TGG + chr8_1:54085283-54085302 Msa1200960:CDS 45.0%
AGCAGCAAGTTCCTTCTTAC+GGG - chr8_1:54085335-54085354 None:intergenic 45.0%
! GTGAGTTTAGCTCAGTTGGT+TGG + chr8_1:54085602-54085621 Msa1200960:intron 45.0%
!!! CTTTTTTTTGGTAGTGGCCG+GGG - chr8_1:54085664-54085683 None:intergenic 45.0%
TTTGTTGGCGTATAAGTGGC+CGG - chr8_1:54085772-54085791 None:intergenic 45.0%
!!! GTTTTTTTTGGTAGTGGCCG+GGG - chr8_1:54085837-54085856 None:intergenic 45.0%
!!! TTTTTTTTGGTAGTGGCCGC+GGG - chr8_1:54085911-54085930 None:intergenic 45.0%
TATACTGGGCCCGATTAACA+GGG - chr8_1:54086606-54086625 None:intergenic 45.0%
ATATACTGGGCCCGATTAAC+AGG - chr8_1:54086607-54086626 None:intergenic 45.0%
AGAATATACCTCCCTCCGAA+AGG + chr8_1:54086894-54086913 Msa1200960:intron 45.0%
! CCGACAAAAGTGTGGTTTCA+TGG - chr8_1:54087281-54087300 None:intergenic 45.0%
GACACTTACCGACAAAAGTG+TGG - chr8_1:54087289-54087308 None:intergenic 45.0%
ACTGGTGTTTATGGACATGC+AGG + chr8_1:54087415-54087434 Msa1200960:intron 45.0%
GTGTTTATGGACATGCAGGA+GGG + chr8_1:54087419-54087438 Msa1200960:intron 45.0%
AAGCAATATCCCCACGCATA+TGG - chr8_1:54087466-54087485 None:intergenic 45.0%
GGGTGTACAAAAGTCTCCTT+GGG - chr8_1:54087506-54087525 None:intergenic 45.0%
! CAAGGAGACTTTTGTACACC+CGG + chr8_1:54087505-54087524 Msa1200960:CDS 45.0%
! ACTTTTGTACACCCGGAGAT+TGG + chr8_1:54087512-54087531 Msa1200960:CDS 45.0%
AGTGGTAGTTAACTACCGCT+GGG - chr8_1:54087979-54087998 None:intergenic 45.0%
GGGTTGGATGGACAAGAAAT+AGG - chr8_1:54088319-54088338 None:intergenic 45.0%
AGGAGAAATCAAGAGAGAGG+GGG - chr8_1:54088345-54088364 None:intergenic 45.0%
GAGGAGAAATCAAGAGAGAG+GGG - chr8_1:54088346-54088365 None:intergenic 45.0%
GAGAGGAGAAATCAAGAGAG+AGG - chr8_1:54088348-54088367 None:intergenic 45.0%
ATTTCTCCTCTCTCTCTTGG+TGG + chr8_1:54088356-54088375 Msa1200960:intron 45.0%
TTTCTCCTCTCTCTCTTGGT+GGG + chr8_1:54088357-54088376 Msa1200960:intron 45.0%
GATACCAAACATGGAGAGAG+TGG + chr8_1:54088439-54088458 Msa1200960:intron 45.0%
!! TGATGGCTTGTTTGCTTGAG+GGG - chr8_1:54089139-54089158 None:intergenic 45.0%
!! CTTGATGGCTTGTTTGCTTG+AGG - chr8_1:54089141-54089160 None:intergenic 45.0%
! GAGCCCGCCATTGATTATAT+TGG - chr8_1:54089244-54089263 None:intergenic 45.0%
AGGATCCTAAAGTCGAGGAT+CGG + chr8_1:54089280-54089299 Msa1200960:CDS 45.0%
CAAATATTGGGAGTGAACCC+CGG + chr8_1:54089327-54089346 Msa1200960:CDS 45.0%
AGTGAACCCCGGTGATAATT+TGG + chr8_1:54089338-54089357 Msa1200960:CDS 45.0%
AGGTACTTCGCTTAGGCAAA+TGG - chr8_1:54089381-54089400 None:intergenic 45.0%
GACTAAAAAGCTAGACGTGC+AGG + chr8_1:54089540-54089559 Msa1200960:three_prime_UTR 45.0%
!!! TTATATTACTTTTTTTTTTT+TGG - chr8_1:54085924-54085943 None:intergenic 5.0%
!!! AAATATAAATATTTTTTTAG+AGG + chr8_1:54086381-54086400 Msa1200960:intron 5.0%
!! TATTATTTATTAAAAACAAA+GGG - chr8_1:54086779-54086798 None:intergenic 5.0%
!! ATATTATTTATTAAAAACAA+AGG - chr8_1:54086780-54086799 None:intergenic 5.0%
!!! AATTATTTTATGATAATTTT+TGG - chr8_1:54087793-54087812 None:intergenic 5.0%
!! AATATAAAGTATAATAATAA+AGG + chr8_1:54089414-54089433 Msa1200960:three_prime_UTR 5.0%
!! ATATAAAGTATAATAATAAA+GGG + chr8_1:54089415-54089434 Msa1200960:three_prime_UTR 5.0%
!! TTATGTATATATTTAAATTT+AGG - chr8_1:54089650-54089669 None:intergenic 5.0%
!! GGTGTTGGTGTTGATGGTGT+CGG - chr8_1:54085139-54085158 None:intergenic 50.0%
ACACCAACACCTAGTACAGG+TGG + chr8_1:54085148-54085167 Msa1200960:CDS 50.0%
CGAAATGATCAGCGTTGTGC+TGG + chr8_1:54085229-54085248 Msa1200960:CDS 50.0%
GGCAGCAATGAAACCATCGT+AGG - chr8_1:54085269-54085288 None:intergenic 50.0%
! TGATGATGCCACCCGTAAGA+AGG + chr8_1:54085321-54085340 Msa1200960:CDS 50.0%
AGCAAGTTCCTTCTTACGGG+TGG - chr8_1:54085332-54085351 None:intergenic 50.0%
CCAACTGAGCTAAACTCACG+AGG - chr8_1:54085601-54085620 None:intergenic 50.0%
! CCTCGTGAGTTTAGCTCAGT+TGG + chr8_1:54085598-54085617 Msa1200960:intron 50.0%
TTGTTGGCGTATAAGTGGCC+GGG - chr8_1:54085771-54085790 None:intergenic 50.0%
GTTCGAGCCTAGCTACCTTT+CGG - chr8_1:54086912-54086931 None:intergenic 50.0%
GTTTGGACTCAGAGGGTTCT+CGG - chr8_1:54086934-54086953 None:intergenic 50.0%
GGTGTTTATGGACATGCAGG+AGG + chr8_1:54087418-54087437 Msa1200960:intron 50.0%
TTTATGGACATGCAGGAGGG+TGG + chr8_1:54087422-54087441 Msa1200960:intron 50.0%
! GTCTCCTTGGGCATCCTTTT+CGG - chr8_1:54087494-54087513 None:intergenic 50.0%
CGGGTGTACAAAAGTCTCCT+TGG - chr8_1:54087507-54087526 None:intergenic 50.0%
TGGTAGTTAACTACCGCTGG+GGG - chr8_1:54087977-54087996 None:intergenic 50.0%
GTGGTAGTTAACTACCGCTG+GGG - chr8_1:54087978-54087997 None:intergenic 50.0%
CAGTGGTAGTTAACTACCGC+TGG - chr8_1:54087980-54087999 None:intergenic 50.0%
! AATCAAGAGAGAGGGGGTGT+GGG - chr8_1:54088339-54088358 None:intergenic 50.0%
AAATCAAGAGAGAGGGGGTG+TGG - chr8_1:54088340-54088359 None:intergenic 50.0%
ACATTCCCACCAAGAGAGAG+AGG - chr8_1:54088365-54088384 None:intergenic 50.0%
CAGTTGGGTTTGTGGAGACT+AGG - chr8_1:54089083-54089102 None:intergenic 50.0%
! ATTGGTGATCACGCCGTATC+CGG - chr8_1:54089226-54089245 None:intergenic 50.0%
AGGTCAGGATCCTAAAGTCG+AGG + chr8_1:54089275-54089294 Msa1200960:CDS 50.0%
GGATCCTAAAGTCGAGGATC+GGG + chr8_1:54089281-54089300 Msa1200960:CDS 50.0%
TCGCTTAGGCAAATGGCCTT+TGG - chr8_1:54089374-54089393 None:intergenic 50.0%
AGGTACGATACGATGAGGCA+CGG + chr8_1:54089560-54089579 Msa1200960:three_prime_UTR 50.0%
ATGAGGCACGGATCTAGTGT+GGG + chr8_1:54089572-54089591 Msa1200960:three_prime_UTR 50.0%
ATACACGTGTGGAGGCAAGT+GGG - chr8_1:54089616-54089635 None:intergenic 50.0%
AATACACGTGTGGAGGCAAG+TGG - chr8_1:54089617-54089636 None:intergenic 50.0%
!! GGTGTTGATGGTGTCGGTGT+TGG - chr8_1:54085133-54085152 None:intergenic 55.0%
CCACCACCTGTACTAGGTGT+TGG - chr8_1:54085154-54085173 None:intergenic 55.0%
CCAACACCTAGTACAGGTGG+TGG + chr8_1:54085151-54085170 Msa1200960:CDS 55.0%
! ACACCTAGTACAGGTGGTGG+TGG + chr8_1:54085154-54085173 Msa1200960:CDS 55.0%
TCTCCACCACCACCTGTACT+AGG - chr8_1:54085160-54085179 None:intergenic 55.0%
!! ACAGGTGGTGGTGGAGATGT+TGG + chr8_1:54085163-54085182 Msa1200960:CDS 55.0%
! GATCAGCGTTGTGCTGGTCA+TGG + chr8_1:54085235-54085254 Msa1200960:CDS 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + chr8_1:54085644-54085663 Msa1200960:intron 55.0%
TGTTGGCGTATAAGTGGCCG+GGG - chr8_1:54085770-54085789 None:intergenic 55.0%
GAGCCTAGCTACCTTTCGGA+GGG - chr8_1:54086908-54086927 None:intergenic 55.0%
TATGGACCGTCTGGTGCACT+TGG - chr8_1:54087448-54087467 None:intergenic 55.0%
ACCAGACGGTCCATATGCGT+GGG + chr8_1:54087453-54087472 Msa1200960:CDS 55.0%
GTCACCGAAAAGGATGCCCA+AGG + chr8_1:54087487-54087506 Msa1200960:CDS 55.0%
! AGGAGCACATGGCCAATCTC+CGG - chr8_1:54087527-54087546 None:intergenic 55.0%
CCTCCCACTCTCTCCATGTT+TGG - chr8_1:54088446-54088465 None:intergenic 55.0%
CCAAACATGGAGAGAGTGGG+AGG + chr8_1:54088443-54088462 Msa1200960:intron 55.0%
GGGTTTGTGGAGACTAGGTC+CGG - chr8_1:54089078-54089097 None:intergenic 55.0%
! TTGGTGATCACGCCGTATCC+GGG - chr8_1:54089225-54089244 None:intergenic 55.0%
!! ATCAATGGCGGGCTCGAATG+CGG + chr8_1:54089249-54089268 Msa1200960:CDS 55.0%
CCTAAAGTCGAGGATCGGGT+CGG + chr8_1:54089285-54089304 Msa1200960:CDS 55.0%
CGTGCAGGTACGATACGATG+AGG + chr8_1:54089555-54089574 Msa1200960:three_prime_UTR 55.0%
GATGAGGCACGGATCTAGTG+TGG + chr8_1:54089571-54089590 Msa1200960:three_prime_UTR 55.0%
TGAGGCACGGATCTAGTGTG+GGG + chr8_1:54089573-54089592 Msa1200960:three_prime_UTR 55.0%
ACGGATCTAGTGTGGGGCAA+TGG + chr8_1:54089579-54089598 Msa1200960:three_prime_UTR 55.0%
CGGATCTAGTGTGGGGCAAT+GGG + chr8_1:54089580-54089599 Msa1200960:three_prime_UTR 55.0%
GGATCTAGTGTGGGGCAATG+GGG + chr8_1:54089581-54089600 Msa1200960:three_prime_UTR 55.0%
ACGGGTGGCATCATCACCAG+TGG - chr8_1:54085317-54085336 None:intergenic 60.0%
GGGTTTGAAGAGCTTGGCCG+GGG - chr8_1:54085750-54085769 None:intergenic 60.0%
GGGGTTTGAAGAGCTTGGCC+GGG - chr8_1:54085751-54085770 None:intergenic 60.0%
CGGGGTTTGAAGAGCTTGGC+CGG - chr8_1:54085752-54085771 None:intergenic 60.0%
CGGCCAAGCTCTTCAAACCC+CGG + chr8_1:54085750-54085769 Msa1200960:intron 60.0%
TGGCCGGGGTTTGAAGAGCT+TGG - chr8_1:54085736-54085755 None:intergenic 60.0%
CCTAGCTACCTTTCGGAGGG+AGG - chr8_1:54086905-54086924 None:intergenic 60.0%
CCTCCCTCCGAAAGGTAGCT+AGG + chr8_1:54086902-54086921 Msa1200960:intron 60.0%
CGAGCCTAGCTACCTTTCGG+AGG - chr8_1:54086909-54086928 None:intergenic 60.0%
CACCAGACGGTCCATATGCG+TGG + chr8_1:54087452-54087471 Msa1200960:CDS 60.0%
CCAGACGGTCCATATGCGTG+GGG + chr8_1:54087454-54087473 Msa1200960:CDS 60.0%
GGAGCACATGGCCAATCTCC+GGG - chr8_1:54087526-54087545 None:intergenic 60.0%
! GGAGATTGGCCATGTGCTCC+TGG + chr8_1:54087526-54087545 Msa1200960:CDS 60.0%
! AAGAGAGAGGGGGTGTGGGT+TGG - chr8_1:54088335-54088354 None:intergenic 60.0%
GCTGAGCTGTCAGCAGCTGA+TGG - chr8_1:54089192-54089211 None:intergenic 60.0%
TCAGCTGCTGACAGCTCAGC+AGG + chr8_1:54089192-54089211 Msa1200960:CDS 60.0%
CAGCTGCTGACAGCTCAGCA+GGG + chr8_1:54089193-54089212 Msa1200960:CDS 60.0%
TGGTGATCACGCCGTATCCG+GGG - chr8_1:54089224-54089243 None:intergenic 60.0%
!! TCAATGGCGGGCTCGAATGC+GGG + chr8_1:54089250-54089269 Msa1200960:CDS 60.0%
GCTCGAATGCGGGAAAGGTC+AGG + chr8_1:54089260-54089279 Msa1200960:CDS 60.0%
CCGACCCGATCCTCGACTTT+AGG - chr8_1:54089288-54089307 None:intergenic 60.0%
!!! TTTTGGTAGTGGCCGCGGGC+CGG - chr8_1:54085907-54085926 None:intergenic 65.0%
GGGTGGCCAAGTGCACCAGA+CGG + chr8_1:54087439-54087458 Msa1200960:CDS 65.0%
CCCCACGCATATGGACCGTC+TGG - chr8_1:54087457-54087476 None:intergenic 65.0%
!! GAGAGGGGGTGTGGGTTGGA+TGG - chr8_1:54088331-54088350 None:intergenic 65.0%
CTGCTGACAGCTCAGCAGGG+CGG + chr8_1:54089196-54089215 Msa1200960:CDS 65.0%
TGCTGACAGCTCAGCAGGGC+GGG + chr8_1:54089197-54089216 Msa1200960:CDS 65.0%
GCTCTTCAAACCCCGGCCCG+CGG + chr8_1:54085892-54085911 Msa1200960:intron 70.0%
!! TTTGGTAGTGGCCGCGGGCC+GGG - chr8_1:54085906-54085925 None:intergenic 70.0%
! GGCGGGCTCGAATGCGGGAA+AGG + chr8_1:54089255-54089274 Msa1200960:CDS 70.0%
!! TTGGTAGTGGCCGCGGGCCG+GGG - chr8_1:54085905-54085924 None:intergenic 75.0%
AGCTCAGCAGGGCGGGTCCC+CGG + chr8_1:54089204-54089223 Msa1200960:CDS 75.0%
GCAGGGCGGGTCCCCGGATA+CGG + chr8_1:54089210-54089229 Msa1200960:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 54084906 54089684 54084906 ID=Msa1200960;Name=Msa1200960
chr8_1 mRNA 54084906 54089684 54084906 ID=Msa1200960-mRNA-1;Parent=Msa1200960;Name=Msa1200960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=32|1|1|1|1|1|3|295|322
chr8_1 exon 54084906 54085385 54084906 ID=Msa1200960-mRNA-1:exon:17340;Parent=Msa1200960-mRNA-1
chr8_1 exon 54087437 54087587 54087437 ID=Msa1200960-mRNA-1:exon:17341;Parent=Msa1200960-mRNA-1
chr8_1 exon 54089020 54089684 54089020 ID=Msa1200960-mRNA-1:exon:17342;Parent=Msa1200960-mRNA-1
chr8_1 five_prime_UTR 54084906 54084937 54084906 ID=Msa1200960-mRNA-1:five_prime_utr;Parent=Msa1200960-mRNA-1
chr8_1 CDS 54084938 54085385 54084938 ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1 CDS 54087437 54087587 54087437 ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1 CDS 54089020 54089389 54089020 ID=Msa1200960-mRNA-1:cds;Parent=Msa1200960-mRNA-1
chr8_1 three_prime_UTR 54089390 54089684 54089390 ID=Msa1200960-mRNA-1:three_prime_utr;Parent=Msa1200960-mRNA-1
Gene Sequence

>Msa1200960

ATGGCGAATATAAACCTTTCTTGGTTGATACTATGTTTACTACCTCTTTTTCTTGTAGCTAAAGCAGAACAATGTGGTAGTCAAGCTAATGGAGCTCTTTGTCCAAATGGGCTATGTTGTAGCAAATTTGGTTTTTGTGGTAGCACTGATCAATACTGTGGAGCTGGTTGTCAGAGCCAATGTAAATCTTCTCCAACACCGACACCATCAACACCAACACCTAGTACAGGTGGTGGTGGAGATGTTGGAAGTATTATTCCATCATCTTTGTTTGATCAAATGCTTAAATATCGAAATGATCAGCGTTGTGCTGGTCATGGATTTTATACCTACGATGGTTTCATTGCTGCCGCTAGATCTTTTAATGGATTTGGTACCACTGGTGATGATGCCACCCGTAAGAAGGAACTTGCTGCTTTTTTGGCACAAACTTCTCATGAAACCACTGGAGGGTGGCCAAGTGCACCAGACGGTCCATATGCGTGGGGATATTGCTTTGTCACCGAAAAGGATGCCCAAGGAGACTTTTGTACACCCGGAGATTGGCCATGTGCTCCTGGTAAAAGATACTATGGCAGAGGACCAATTCAACTCACTCACAATTACAATTACGGTCAAGCGGGTAAAGCCATTAATGAAGATTTAATAAACAATCCGGACCTAGTCTCCACAAACCCAACTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGCAAACAAGCCATCAAGCCATGATGTGATTACTGGAAGATGGAAGCCATCAGCTGCTGACAGCTCAGCAGGGCGGGTCCCCGGATACGGCGTGATCACCAATATAATCAATGGCGGGCTCGAATGCGGGAAAGGTCAGGATCCTAAAGTCGAGGATCGGGTCGGATTTTATAAAAGGTATTGTCAAATATTGGGAGTGAACCCCGGTGATAATTTGGATTGTAACAACCAAAGGCCATTTGCCTAA
Protein sequence

>Msa1200960

MANINLSWLILCLLPLFLVAKAEQCGSQANGALCPNGLCCSKFGFCGSTDQYCGAGCQSQCKSSPTPTPSTPTPSTGGGGDVGSIIPSSLFDQMLKYRNDQRCAGHGFYTYDGFIAAARSFNGFGTTGDDATRKKELAAFLAQTSHETTGGWPSAPDGPYAWGYCFVTEKDAQGDFCTPGDWPCAPGKRYYGRGPIQLTHNYNYGQAGKAINEDLINNPDLVSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWKPSAADSSAGRVPGYGVITNIINGGLECGKGQDPKVEDRVGFYKRYCQILGVNPGDNLDCNNQRPFA*