AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047470 MtrunA17_Chr6g0450831 98.000 300 4 1 1 298 1 300 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047470 AT3G55250.1 54.333 300 106 6 1 296 2 274 1.06e-106 311

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 1_1:+80350996 None:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 1_1:-80348988 Msa0047470:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 1_1:+80350973 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 1_1:+80347577 None:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 1_1:-80347572 Msa0047470:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 1_1:-80350958 Msa0047470:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 1_1:-80349020 Msa0047470:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 1_1:-80347406 Msa0047470:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 1_1:-80347884 Msa0047470:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 1_1:-80347513 Msa0047470:three_prime_UTR
TATATGTTGTGTTATCTTGT+TGG 0.347247 1_1:+80351247 None:intergenic
TGAAGATGGTGATGTGAGTT+TGG 0.354292 1_1:+80351098 None:intergenic
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 1_1:-80350940 Msa0047470:CDS
TTGATATACAATGCATTGAA+TGG 0.390085 1_1:-80347610 Msa0047470:three_prime_UTR
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 1_1:-80347956 Msa0047470:CDS
TCTATGTTCTGCTATGTTGT+TGG 0.398804 1_1:-80349034 Msa0047470:CDS
TCAACAGCTTCCTTTGATAG+AGG 0.406723 1_1:+80347704 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 1_1:+80347854 None:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 1_1:-80347521 Msa0047470:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 1_1:+80347719 None:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 1_1:+80347917 None:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 1_1:-80348968 Msa0047470:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 1_1:+80351011 None:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 1_1:-80349069 Msa0047470:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 1_1:+80349038 None:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 1_1:-80348943 Msa0047470:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 1_1:-80347376 Msa0047470:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 1_1:-80347522 Msa0047470:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 1_1:-80349014 Msa0047470:CDS
AGGTTGAAGAATTGTGAATA+TGG 0.458125 1_1:+80351132 None:intergenic
TTTCACCATTAAAGCTTACA+TGG 0.460009 1_1:-80351001 Msa0047470:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.461380 1_1:-80349065 Msa0047470:intron
GCTAGGATTATGAGTGATGA+AGG 0.474789 1_1:-80350910 Msa0047470:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 1_1:-80347933 Msa0047470:CDS
GATGAACATGGTGGTGGCTG+TGG 0.501553 1_1:+80351061 None:intergenic
CTCTCTTGCTTCATCCATCA+TGG 0.504937 1_1:+80348905 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 1_1:-80350901 Msa0047470:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 1_1:+80350928 None:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 1_1:+80347926 None:intergenic
GTTTGAAAGTACCATGTTTG+TGG 0.523489 1_1:+80351182 None:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 1_1:-80347758 Msa0047470:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 1_1:-80350859 Msa0047470:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 1_1:+80351055 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.535398 1_1:-80349063 Msa0047470:intron
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 1_1:-80347750 Msa0047470:CDS
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 1_1:-80347879 Msa0047470:CDS
TGTAGGCAGGGGATCAGGCA+GGG 0.548433 1_1:-80349064 Msa0047470:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 1_1:-80350802 Msa0047470:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 1_1:+80347557 None:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 1_1:-80347789 Msa0047470:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 1_1:-80350798 Msa0047470:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 1_1:-80347714 Msa0047470:CDS
TCGACGCATGGTTAAAGAGA+TGG 0.576065 1_1:-80347777 Msa0047470:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 1_1:-80347588 Msa0047470:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 1_1:-80347930 Msa0047470:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 1_1:+80347929 None:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 1_1:+80351012 None:intergenic
ACTAGATGTTGTAAAACTTG+GGG 0.590076 1_1:-80347520 Msa0047470:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 1_1:+80347925 None:intergenic
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 1_1:-80350797 Msa0047470:intron
AAGAGAAGTGATGATGAAGA+TGG 0.607751 1_1:+80351084 None:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 1_1:+80347408 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 1_1:-80348904 Msa0047470:intron
AAGATGATGGTGATGAAGTG+AGG 0.616181 1_1:+80351160 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.617255 1_1:-80348919 Msa0047470:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 1_1:-80347853 Msa0047470:CDS
TGAGTTTGGAGAATGATGAG+AGG 0.632202 1_1:+80351112 None:intergenic
GAATATGGTGATGAAGATGA+TGG 0.648564 1_1:+80351147 None:intergenic
TTGTTTGGTGATGAACATGG+TGG 0.668676 1_1:+80351052 None:intergenic
ACACAACATATATAAACGAG+AGG 0.669113 1_1:-80351236 Msa0047470:five_prime_UTR
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 1_1:-80348997 Msa0047470:CDS
GCAGACAAAGTAGAAGATGG+AGG 0.689858 1_1:-80347755 Msa0047470:CDS
AGGATTATGAGTGATGAAGG+TGG 0.737229 1_1:-80350907 Msa0047470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATTAGAGTTTAA+TGG + chr1_1:80348231-80348250 None:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG - chr1_1:80348230-80348249 Msa0047470:intron 10.0%
!! AAAGATGCAAAATTTAATAA+AGG + chr1_1:80347868-80347887 None:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG + chr1_1:80349015-80349034 None:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG + chr1_1:80350529-80350548 None:intergenic 15.0%
!! TCTCATTCACATAAAATAAA+AGG + chr1_1:80348040-80348059 None:intergenic 20.0%
!! ATAAAATTAGAGTTTAATGG+AGG + chr1_1:80348228-80348247 None:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG - chr1_1:80348273-80348292 Msa0047470:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG + chr1_1:80348518-80348537 None:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG - chr1_1:80348517-80348536 Msa0047470:intron 20.0%
!! AATAGTTGTATCATTTGATA+AGG - chr1_1:80348873-80348892 Msa0047470:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG - chr1_1:80348913-80348932 Msa0047470:CDS 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG - chr1_1:80348986-80349005 Msa0047470:CDS 20.0%
!! TAACCCTTATAATTTGATTA+AGG - chr1_1:80349009-80349028 Msa0047470:CDS 20.0%
!! CTAACCTTAATCAAATTATA+AGG + chr1_1:80349016-80349035 None:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG - chr1_1:80349146-80349165 Msa0047470:intron 20.0%
!! AAAGATTCATATTTGATTGT+GGG + chr1_1:80349321-80349340 None:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG - chr1_1:80349323-80349342 Msa0047470:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG - chr1_1:80349324-80349343 Msa0047470:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG - chr1_1:80349891-80349910 Msa0047470:intron 20.0%
!!! TCCTTTTTAATCTACATTTA+GGG + chr1_1:80349954-80349973 None:intergenic 20.0%
!!! TTCCTTTTTAATCTACATTT+AGG + chr1_1:80349955-80349974 None:intergenic 20.0%
!! AATAGGAATGATCTAAATAT+TGG - chr1_1:80350158-80350177 Msa0047470:intron 20.0%
!! ATAGGAATGATCTAAATATT+GGG - chr1_1:80350159-80350178 Msa0047470:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG + chr1_1:80350952-80350971 None:intergenic 20.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG + chr1_1:80347581-80347600 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG + chr1_1:80347606-80347625 None:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG + chr1_1:80347607-80347626 None:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG + chr1_1:80347645-80347664 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG - chr1_1:80347657-80347676 Msa0047470:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG - chr1_1:80347900-80347919 Msa0047470:CDS 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG - chr1_1:80347952-80347971 Msa0047470:CDS 25.0%
! AACCAAAAAAATGCAACATT+AGG + chr1_1:80347957-80347976 None:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG - chr1_1:80347982-80348001 Msa0047470:intron 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG - chr1_1:80348073-80348092 Msa0047470:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG - chr1_1:80348096-80348115 Msa0047470:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG + chr1_1:80348100-80348119 None:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG - chr1_1:80348167-80348186 Msa0047470:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG - chr1_1:80348246-80348265 Msa0047470:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG - chr1_1:80348247-80348266 Msa0047470:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG - chr1_1:80348311-80348330 Msa0047470:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG - chr1_1:80348326-80348345 Msa0047470:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG - chr1_1:80348363-80348382 Msa0047470:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG - chr1_1:80348364-80348383 Msa0047470:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG - chr1_1:80348524-80348543 Msa0047470:intron 25.0%
! AATATCAACCATAATCAACA+GGG + chr1_1:80348636-80348655 None:intergenic 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG + chr1_1:80348987-80349006 None:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG - chr1_1:80348985-80349004 Msa0047470:CDS 25.0%
! AAGATGCAAAATTTGAACTT+GGG + chr1_1:80349068-80349087 None:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG - chr1_1:80349068-80349087 Msa0047470:intron 25.0%
! TATAGTTTGATACCTAAATG+AGG - chr1_1:80349096-80349115 Msa0047470:intron 25.0%
! ACCTTATAATTGATTAAGGT+TGG - chr1_1:80349150-80349169 Msa0047470:intron 25.0%
! TTGTTCTGTATAGTTAAATG+AGG - chr1_1:80349229-80349248 Msa0047470:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG + chr1_1:80349322-80349341 None:intergenic 25.0%
!! TCTTTTCCTTTTTATTCTTG+AGG - chr1_1:80349436-80349455 Msa0047470:intron 25.0%
! AATCTACCTCAAGAATAAAA+AGG + chr1_1:80349445-80349464 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG - chr1_1:80349486-80349505 Msa0047470:intron 25.0%
! ACCCTAAATGTAGATTAAAA+AGG - chr1_1:80349950-80349969 Msa0047470:intron 25.0%
!! TGATATTCAACACGATATTT+TGG + chr1_1:80350048-80350067 None:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG - chr1_1:80350268-80350287 Msa0047470:intron 25.0%
! CTAGAGAACTTATGAAAATA+TGG + chr1_1:80350451-80350470 None:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG - chr1_1:80350449-80350468 Msa0047470:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG + chr1_1:80350625-80350644 None:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG - chr1_1:80351005-80351024 Msa0047470:CDS 25.0%
! GAATTATATTTCCTAAAGCA+AGG - chr1_1:80351027-80351046 Msa0047470:CDS 25.0%
! ATACTAGATGTTGTAAAACT+TGG - chr1_1:80351093-80351112 Msa0047470:CDS 25.0%
! TACTAGATGTTGTAAAACTT+GGG - chr1_1:80351094-80351113 Msa0047470:CDS 25.0%
! AGATGATACAAAAGATTTCA+AGG - chr1_1:80351239-80351258 Msa0047470:five_prime_UTR 25.0%
ACACAACATATATAAACGAG+AGG - chr1_1:80347379-80347398 Msa0047470:three_prime_UTR 30.0%
CAAAAACAAAACCACAAACA+TGG - chr1_1:80347422-80347441 Msa0047470:three_prime_UTR 30.0%
AGGTTGAAGAATTGTGAATA+TGG + chr1_1:80347486-80347505 None:intergenic 30.0%
TTTCACCATTAAAGCTTACA+TGG - chr1_1:80347614-80347633 Msa0047470:three_prime_UTR 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG + chr1_1:80347622-80347641 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG - chr1_1:80347751-80347770 Msa0047470:CDS 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG - chr1_1:80347752-80347771 Msa0047470:CDS 30.0%
GAACATGAATTAACCTCAAT+AGG + chr1_1:80347916-80347935 None:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG - chr1_1:80347986-80348005 Msa0047470:intron 30.0%
GATGTGAATTTATTGGATGA+CGG - chr1_1:80348174-80348193 Msa0047470:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG - chr1_1:80348582-80348601 Msa0047470:intron 30.0%
GAATATCAACCATAATCAAC+AGG + chr1_1:80348637-80348656 None:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG + chr1_1:80348673-80348692 None:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG - chr1_1:80348674-80348693 Msa0047470:intron 30.0%
AACCATAAATCACTACATAC+TGG - chr1_1:80348789-80348808 Msa0047470:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG + chr1_1:80348794-80348813 None:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG - chr1_1:80348835-80348854 Msa0047470:intron 30.0%
CAACTATTGATCATAGAGTT+TGG + chr1_1:80348861-80348880 None:intergenic 30.0%
AGATGCAAAATTTGAACTTG+GGG + chr1_1:80349067-80349086 None:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG + chr1_1:80349069-80349088 None:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG - chr1_1:80349067-80349086 Msa0047470:intron 30.0%
GCCAACCTTAATCAATTATA+AGG + chr1_1:80349154-80349173 None:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG + chr1_1:80349211-80349230 None:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG + chr1_1:80349212-80349231 None:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG + chr1_1:80349213-80349232 None:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG - chr1_1:80349241-80349260 Msa0047470:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG + chr1_1:80349317-80349336 None:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG - chr1_1:80349343-80349362 Msa0047470:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG - chr1_1:80349344-80349363 Msa0047470:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG - chr1_1:80349368-80349387 Msa0047470:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG + chr1_1:80349408-80349427 None:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG - chr1_1:80349448-80349467 Msa0047470:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG - chr1_1:80349984-80350003 Msa0047470:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG + chr1_1:80350005-80350024 None:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG + chr1_1:80350031-80350050 None:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG - chr1_1:80350052-80350071 Msa0047470:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG - chr1_1:80350057-80350076 Msa0047470:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG - chr1_1:80350141-80350160 Msa0047470:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG + chr1_1:80350201-80350220 None:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG + chr1_1:80350220-80350239 None:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG + chr1_1:80350236-80350255 None:intergenic 30.0%
GGAATATATGTCATACATCT+TGG + chr1_1:80350304-80350323 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr1_1:80350338-80350357 None:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG + chr1_1:80350435-80350454 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG - chr1_1:80350645-80350664 Msa0047470:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG - chr1_1:80350646-80350665 Msa0047470:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG + chr1_1:80350818-80350837 None:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG - chr1_1:80351095-80351114 Msa0047470:CDS 30.0%
!! GTTTGAAAGTACCATGTTTG+TGG + chr1_1:80347436-80347455 None:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG + chr1_1:80347471-80347490 None:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG + chr1_1:80347534-80347553 None:intergenic 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG + chr1_1:80347569-80347588 None:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG - chr1_1:80347813-80347832 Msa0047470:CDS 35.0%
! TCATGTAGAATCGATTCTAG+AGG - chr1_1:80348467-80348486 Msa0047470:intron 35.0%
ACCGTAATCTGACAACTATA+AGG + chr1_1:80348586-80348605 None:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG - chr1_1:80348646-80348665 Msa0047470:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG - chr1_1:80348662-80348681 Msa0047470:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG - chr1_1:80348663-80348682 Msa0047470:intron 35.0%
TTAGTTGGGTATCAATTAGG+AGG - chr1_1:80348677-80348696 Msa0047470:intron 35.0%
TAGTTGGGTATCAATTAGGA+GGG - chr1_1:80348678-80348697 Msa0047470:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG - chr1_1:80348733-80348752 Msa0047470:intron 35.0%
GCATGAAATCAACCTCATTT+AGG + chr1_1:80349111-80349130 None:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG - chr1_1:80349400-80349419 Msa0047470:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG - chr1_1:80349534-80349553 Msa0047470:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG - chr1_1:80349538-80349557 Msa0047470:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG - chr1_1:80349539-80349558 Msa0047470:intron 35.0%
CAACATAGCAGAACATAGAT+AGG + chr1_1:80349580-80349599 None:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG - chr1_1:80349581-80349600 Msa0047470:intron 35.0%
! TCTCAAAACTGAGGAGATTT+TGG - chr1_1:80349627-80349646 Msa0047470:intron 35.0%
! AAAACTGAGGAGATTTTGGA+AGG - chr1_1:80349631-80349650 Msa0047470:intron 35.0%
CTCAAACGACATTGAATTTG+AGG - chr1_1:80349672-80349691 Msa0047470:intron 35.0%
TAGTCCAGGAAAAAATAGTC+TGG - chr1_1:80349998-80350017 Msa0047470:intron 35.0%
CGGCACATATACAAAATTCA+AGG - chr1_1:80350077-80350096 Msa0047470:intron 35.0%
ATTGCGATTGGGATTAATCA+AGG + chr1_1:80350190-80350209 None:intergenic 35.0%
CTAGGAAAATTCATTGCGAT+TGG + chr1_1:80350202-80350221 None:intergenic 35.0%
GACATATATTCCTGCTCTTT+CGG - chr1_1:80350312-80350331 Msa0047470:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG - chr1_1:80350616-80350635 Msa0047470:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG - chr1_1:80351102-80351121 Msa0047470:CDS 35.0%
CAAACTAGTGAAGGAAAAAC+TGG + chr1_1:80351201-80351220 None:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG + chr1_1:80351210-80351229 None:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG - chr1_1:80351209-80351228 Msa0047470:five_prime_UTR 35.0%
! AAGATGATGGTGATGAAGTG+AGG + chr1_1:80347458-80347477 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG + chr1_1:80347506-80347525 None:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG + chr1_1:80347520-80347539 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG + chr1_1:80347566-80347585 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG + chr1_1:80347690-80347709 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG - chr1_1:80347688-80347707 Msa0047470:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG - chr1_1:80347705-80347724 Msa0047470:CDS 40.0%
AGGATTATGAGTGATGAAGG+TGG - chr1_1:80347708-80347727 Msa0047470:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG - chr1_1:80347817-80347836 Msa0047470:CDS 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG - chr1_1:80347818-80347837 Msa0047470:CDS 40.0%
AGTGACTTGAGCAACAAACT+TGG - chr1_1:80348401-80348420 Msa0047470:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG - chr1_1:80348402-80348421 Msa0047470:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG + chr1_1:80349404-80349423 None:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG - chr1_1:80349455-80349474 Msa0047470:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG - chr1_1:80349513-80349532 Msa0047470:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG - chr1_1:80349540-80349559 Msa0047470:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG - chr1_1:80349696-80349715 Msa0047470:intron 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG + chr1_1:80349744-80349763 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG - chr1_1:80350109-80350128 Msa0047470:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG + chr1_1:80350126-80350145 None:intergenic 40.0%
!! AAACTGTTCTAGAGAACGTG+TGG - chr1_1:80350391-80350410 Msa0047470:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG - chr1_1:80350659-80350678 Msa0047470:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG - chr1_1:80350731-80350750 Msa0047470:intron 40.0%
CTCTCATCTTCTGTCTCTAT+AGG + chr1_1:80350764-80350783 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG - chr1_1:80350762-80350781 Msa0047470:intron 40.0%
AAAACAAGAGATTCGACGCA+TGG - chr1_1:80350826-80350845 Msa0047470:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG - chr1_1:80350857-80350876 Msa0047470:CDS 40.0%
CAAAGTAGAAGATGGAGGTA+TGG - chr1_1:80350865-80350884 Msa0047470:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG + chr1_1:80350914-80350933 None:intergenic 40.0%
!! TTTGGTGATGAACATGGTGG+TGG + chr1_1:80347563-80347582 None:intergenic 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG - chr1_1:80347675-80347694 Msa0047470:CDS 45.0%
ATGAGTGATGAAGGTGGTGT+TGG - chr1_1:80347714-80347733 Msa0047470:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG - chr1_1:80347756-80347775 Msa0047470:CDS 45.0%
! AGCTGCTACCCTGTTGATTA+TGG - chr1_1:80348625-80348644 Msa0047470:intron 45.0%
TGGGTATCAATTAGGAGGGT+TGG - chr1_1:80348682-80348701 Msa0047470:intron 45.0%
GGGTATCAATTAGGAGGGTT+GGG - chr1_1:80348683-80348702 Msa0047470:intron 45.0%
GGTATCAATTAGGAGGGTTG+GGG - chr1_1:80348684-80348703 Msa0047470:intron 45.0%
GTATCAATTAGGAGGGTTGG+GGG - chr1_1:80348685-80348704 Msa0047470:intron 45.0%
AAACCCTGTGGAACGATTCA+GGG - chr1_1:80348717-80348736 Msa0047470:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG + chr1_1:80348723-80348742 None:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG + chr1_1:80348724-80348743 None:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG - chr1_1:80349203-80349222 Msa0047470:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG + chr1_1:80349208-80349227 None:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG - chr1_1:80349595-80349614 Msa0047470:intron 45.0%
TGCAGGTCTTCTCAAAACTG+AGG - chr1_1:80349618-80349637 Msa0047470:intron 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG - chr1_1:80349637-80349656 Msa0047470:intron 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG - chr1_1:80349641-80349660 Msa0047470:intron 45.0%
CTCTCTTGCTTCATCCATCA+TGG + chr1_1:80349713-80349732 None:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG - chr1_1:80349711-80349730 Msa0047470:intron 45.0%
! CTTTGCTATGCCAACATGGT+TGG + chr1_1:80350122-80350141 None:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG - chr1_1:80350736-80350755 Msa0047470:intron 45.0%
TCGACGCATGGTTAAAGAGA+TGG - chr1_1:80350838-80350857 Msa0047470:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG - chr1_1:80350860-80350879 Msa0047470:CDS 45.0%
TGCTGCTAAGCCTCTATCAA+AGG - chr1_1:80350901-80350920 Msa0047470:CDS 45.0%
AGGCTCAAACACCTTGCTTT+AGG + chr1_1:80351041-80351060 None:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG - chr1_1:80351043-80351062 Msa0047470:CDS 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG - chr1_1:80351054-80351073 Msa0047470:CDS 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG - chr1_1:80351055-80351074 Msa0047470:CDS 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG - chr1_1:80351056-80351075 Msa0047470:CDS 45.0%
TTCCCCTATGAGTAGCCAAA+AGG + chr1_1:80351061-80351080 None:intergenic 45.0%
GAAACCCTGTGGAACGATTC+AGG - chr1_1:80348716-80348735 Msa0047470:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG + chr1_1:80349201-80349220 None:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG - chr1_1:80349546-80349565 Msa0047470:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG + chr1_1:80350693-80350712 None:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG + chr1_1:80350701-80350720 None:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG + chr1_1:80350899-80350918 None:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG + chr1_1:80347557-80347576 None:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG - chr1_1:80349601-80349620 Msa0047470:intron 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG - chr1_1:80349647-80349666 Msa0047470:intron 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG - chr1_1:80350321-80350340 Msa0047470:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG + chr1_1:80350325-80350344 None:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG + chr1_1:80350692-80350711 None:intergenic 55.0%
ATTAGGAGGGTTGGGGGTCC+AGG - chr1_1:80348691-80348710 Msa0047470:intron 60.0%
TTAGGAGGGTTGGGGGTCCA+GGG - chr1_1:80348692-80348711 Msa0047470:intron 60.0%
CGTTCCACAGGGTTTCACCC+TGG + chr1_1:80348712-80348731 None:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG - chr1_1:80349551-80349570 Msa0047470:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG - chr1_1:80350682-80350701 Msa0047470:intron 60.0%
ACCTCCCGCTGTTCCAATGG+AGG - chr1_1:80350685-80350704 Msa0047470:intron 60.0%
ACCTCCATTGGAACAGCGGG+AGG + chr1_1:80350689-80350708 None:intergenic 60.0%
GGGTCCAGGGTGAAACCCTG+TGG - chr1_1:80348705-80348724 Msa0047470:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG - chr1_1:80349550-80349569 Msa0047470:intron 65.0%
GTAGGCAGGGGATCAGGCAG+GGG - chr1_1:80349552-80349571 Msa0047470:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80347369 80351268 80347369 ID=Msa0047470;Name=Msa0047470
chr1_1 mRNA 80347369 80351268 80347369 ID=Msa0047470-mRNA-1;Parent=Msa0047470;Name=Msa0047470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|3|286|298
chr1_1 exon 80347369 80347975 80347369 ID=Msa0047470-mRNA-1:exon:27764;Parent=Msa0047470-mRNA-1
chr1_1 exon 80348905 80349081 80348905 ID=Msa0047470-mRNA-1:exon:27763;Parent=Msa0047470-mRNA-1
chr1_1 exon 80350798 80351268 80350798 ID=Msa0047470-mRNA-1:exon:27762;Parent=Msa0047470-mRNA-1
chr1_1 five_prime_UTR 80351197 80351268 80351197 ID=Msa0047470-mRNA-1:five_prime_utr;Parent=Msa0047470-mRNA-1
chr1_1 CDS 80350798 80351196 80350798 ID=Msa0047470-mRNA-1:cds;Parent=Msa0047470-mRNA-1
chr1_1 CDS 80348905 80349081 80348905 ID=Msa0047470-mRNA-1:cds;Parent=Msa0047470-mRNA-1
chr1_1 CDS 80347655 80347975 80347655 ID=Msa0047470-mRNA-1:cds;Parent=Msa0047470-mRNA-1
chr1_1 three_prime_UTR 80347369 80347654 80347369 ID=Msa0047470-mRNA-1:three_prime_utr;Parent=Msa0047470-mRNA-1
Gene Sequence

>Msa0047470

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa0047470

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*