AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971860 MtrunA17_Chr6g0450831 98.000 300 4 1 1 298 1 300 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971860 AT3G55250.1 54.333 300 106 6 1 296 2 274 1.06e-106 311

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 6_4:+3972662 None:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 6_4:-3970656 Msa0971860:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 6_4:+3972639 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 6_4:+3969135 None:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 6_4:-3969130 Msa0971860:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 6_4:-3972624 Msa0971860:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 6_4:-3970688 Msa0971860:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 6_4:-3968964 Msa0971860:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 6_4:-3969442 Msa0971860:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 6_4:-3969071 Msa0971860:three_prime_UTR
TATATGTTGTGTTATCTTGT+TGG 0.347247 6_4:+3972913 None:intergenic
TGAAGATGGTGATGTGAGTT+TGG 0.354292 6_4:+3972764 None:intergenic
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 6_4:-3972606 Msa0971860:CDS
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 6_4:-3969514 Msa0971860:CDS
TCTATGTTCTGCTATGTTGT+TGG 0.398804 6_4:-3970702 Msa0971860:CDS
TTGATATACAATGCATTGAA+TGG 0.399430 6_4:-3969168 Msa0971860:three_prime_UTR
TCAACAGCTTCCTTTGATAG+AGG 0.406723 6_4:+3969262 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 6_4:+3969412 None:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 6_4:-3969079 Msa0971860:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 6_4:+3969277 None:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 6_4:+3969475 None:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 6_4:-3970636 Msa0971860:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 6_4:+3972677 None:intergenic
AGGTTGAAGAACTGTGAATA+TGG 0.433508 6_4:+3972798 None:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 6_4:-3970737 Msa0971860:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 6_4:+3970706 None:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 6_4:-3970611 Msa0971860:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 6_4:-3968934 Msa0971860:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 6_4:-3969080 Msa0971860:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 6_4:-3970682 Msa0971860:CDS
TTTCACCATTAAAGCTTACA+TGG 0.460009 6_4:-3972667 Msa0971860:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.461380 6_4:-3970733 Msa0971860:intron
GCTAGGATTATGAGTGATGA+AGG 0.474789 6_4:-3972576 Msa0971860:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 6_4:-3969491 Msa0971860:CDS
GATGAACATGGTGGTGGCTG+TGG 0.501553 6_4:+3972727 None:intergenic
CTCTCTTGCTTCATCCATCA+TGG 0.504937 6_4:+3970573 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 6_4:-3972567 Msa0971860:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 6_4:+3972594 None:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 6_4:+3969484 None:intergenic
GTTTGAAAGTACCATGTTTG+TGG 0.523489 6_4:+3972848 None:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 6_4:-3969316 Msa0971860:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 6_4:-3972525 Msa0971860:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 6_4:+3972721 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.535398 6_4:-3970731 Msa0971860:intron
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 6_4:-3969308 Msa0971860:CDS
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 6_4:-3969437 Msa0971860:CDS
TGTAGGCAGGGGATCAGGCA+GGG 0.548433 6_4:-3970732 Msa0971860:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 6_4:-3972468 Msa0971860:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 6_4:+3969115 None:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 6_4:-3969347 Msa0971860:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 6_4:-3972464 Msa0971860:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 6_4:-3969272 Msa0971860:CDS
TCGACGCATGGTTAAAGAGA+TGG 0.576065 6_4:-3969335 Msa0971860:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 6_4:-3969146 Msa0971860:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 6_4:-3969488 Msa0971860:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 6_4:+3969487 None:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 6_4:+3972678 None:intergenic
ACTAGATGTTGTAAAACTTG+GGG 0.590076 6_4:-3969078 Msa0971860:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 6_4:+3969483 None:intergenic
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 6_4:-3972463 Msa0971860:intron
AAGAGAAGTGATGATGAAGA+TGG 0.607751 6_4:+3972750 None:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 6_4:+3968966 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 6_4:-3970572 Msa0971860:intron
AAGATGATGGTGATGAAGTG+AGG 0.616181 6_4:+3972826 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.617255 6_4:-3970587 Msa0971860:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 6_4:-3969411 Msa0971860:CDS
GAATATGGTGATGAAGATGA+TGG 0.625452 6_4:+3972813 None:intergenic
TGAGTTTGGAGAATGATGAG+AGG 0.632202 6_4:+3972778 None:intergenic
TTGTTTGGTGATGAACATGG+TGG 0.668676 6_4:+3972718 None:intergenic
ACACAACATATATAAACGAG+AGG 0.669113 6_4:-3972902 Msa0971860:five_prime_UTR
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 6_4:-3970665 Msa0971860:CDS
GCAGACAAAGTAGAAGATGG+AGG 0.689858 6_4:-3969313 Msa0971860:CDS
AGGATTATGAGTGATGAAGG+TGG 0.737229 6_4:-3972573 Msa0971860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATTAGAGTTTAA+TGG + chr6_4:3969787-3969806 None:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG - chr6_4:3969786-3969805 Msa0971860:intron 10.0%
!! AAAGATGCAAAATTTAATAA+AGG + chr6_4:3969426-3969445 None:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG + chr6_4:3970571-3970590 None:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG + chr6_4:3972195-3972214 None:intergenic 15.0%
!! ATAAAATTAGAGTTTAATGG+AGG + chr6_4:3969784-3969803 None:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG - chr6_4:3969829-3969848 Msa0971860:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG + chr6_4:3970074-3970093 None:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG - chr6_4:3970073-3970092 Msa0971860:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG - chr6_4:3970469-3970488 Msa0971860:intron 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG - chr6_4:3970542-3970561 Msa0971860:intron 20.0%
!! TAACCCTTATAATTTGATTA+AGG - chr6_4:3970565-3970584 Msa0971860:intron 20.0%
!! CTAACCTTAATCAAATTATA+AGG + chr6_4:3970572-3970591 None:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG - chr6_4:3970702-3970721 Msa0971860:CDS 20.0%
!! AAAGATTCATATTTGATTGT+GGG + chr6_4:3970877-3970896 None:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG - chr6_4:3970879-3970898 Msa0971860:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG - chr6_4:3970880-3970899 Msa0971860:intron 20.0%
!!! TATTTTCCTTTTTATTCTTG+AGG - chr6_4:3970992-3971011 Msa0971860:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG - chr6_4:3971455-3971474 Msa0971860:intron 20.0%
!!! TCCTTTTTAATCTACATTTA+GGG + chr6_4:3971518-3971537 None:intergenic 20.0%
!!! TTCCTTTTTAATCTACATTT+AGG + chr6_4:3971519-3971538 None:intergenic 20.0%
!!! CAATTTGATAGATTTAGAAT+CGG - chr6_4:3971934-3971953 Msa0971860:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG + chr6_4:3972618-3972637 None:intergenic 20.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG + chr6_4:3969139-3969158 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG + chr6_4:3969164-3969183 None:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG + chr6_4:3969165-3969184 None:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG + chr6_4:3969203-3969222 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG - chr6_4:3969215-3969234 Msa0971860:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG - chr6_4:3969458-3969477 Msa0971860:CDS 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG - chr6_4:3969510-3969529 Msa0971860:CDS 25.0%
! AACCAAAAAAATGCAACATT+AGG + chr6_4:3969515-3969534 None:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG - chr6_4:3969540-3969559 Msa0971860:intron 25.0%
! CTCATTCACATAAAATAACA+AGG + chr6_4:3969598-3969617 None:intergenic 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG - chr6_4:3969632-3969651 Msa0971860:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG - chr6_4:3969655-3969674 Msa0971860:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG + chr6_4:3969659-3969678 None:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG - chr6_4:3969723-3969742 Msa0971860:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG - chr6_4:3969802-3969821 Msa0971860:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG - chr6_4:3969803-3969822 Msa0971860:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG - chr6_4:3969867-3969886 Msa0971860:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG - chr6_4:3969882-3969901 Msa0971860:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG - chr6_4:3969919-3969938 Msa0971860:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG - chr6_4:3969920-3969939 Msa0971860:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG - chr6_4:3970080-3970099 Msa0971860:intron 25.0%
! AATAGTCGTATCATTTGATA+AGG - chr6_4:3970429-3970448 Msa0971860:intron 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG + chr6_4:3970543-3970562 None:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG - chr6_4:3970541-3970560 Msa0971860:intron 25.0%
! AAGATGCAAAATTTGAACTT+GGG + chr6_4:3970624-3970643 None:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG - chr6_4:3970624-3970643 Msa0971860:CDS 25.0%
! TATAGTTTGATACCTAAATG+AGG - chr6_4:3970652-3970671 Msa0971860:CDS 25.0%
! ACCTTATAATTGATTAAGGT+TGG - chr6_4:3970706-3970725 Msa0971860:CDS 25.0%
! TTGTTCTGTATAGTTAAATG+AGG - chr6_4:3970785-3970804 Msa0971860:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG + chr6_4:3970878-3970897 None:intergenic 25.0%
! AATCTACCTCAAGAATAAAA+AGG + chr6_4:3971001-3971020 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG - chr6_4:3971042-3971061 Msa0971860:intron 25.0%
! ACCCTAAATGTAGATTAAAA+AGG - chr6_4:3971514-3971533 Msa0971860:intron 25.0%
!! TGATATTCAACACGATATTT+TGG + chr6_4:3971614-3971633 None:intergenic 25.0%
! CTAGAGAACTTATGAAAATA+TGG + chr6_4:3972117-3972136 None:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG - chr6_4:3972115-3972134 Msa0971860:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG + chr6_4:3972291-3972310 None:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG - chr6_4:3972671-3972690 Msa0971860:CDS 25.0%
! GAATTATATTTCCTAAAGCA+AGG - chr6_4:3972693-3972712 Msa0971860:CDS 25.0%
! ATACTAGATGTTGTAAAACT+TGG - chr6_4:3972759-3972778 Msa0971860:CDS 25.0%
! TACTAGATGTTGTAAAACTT+GGG - chr6_4:3972760-3972779 Msa0971860:CDS 25.0%
! AGATGATACAAAAGATTTCA+AGG - chr6_4:3972905-3972924 Msa0971860:five_prime_UTR 25.0%
ACACAACATATATAAACGAG+AGG - chr6_4:3968937-3968956 Msa0971860:three_prime_UTR 30.0%
CAAAAACAAAACCACAAACA+TGG - chr6_4:3968980-3968999 Msa0971860:three_prime_UTR 30.0%
TTTCACCATTAAAGCTTACA+TGG - chr6_4:3969172-3969191 Msa0971860:three_prime_UTR 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG + chr6_4:3969180-3969199 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG - chr6_4:3969309-3969328 Msa0971860:CDS 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG - chr6_4:3969310-3969329 Msa0971860:CDS 30.0%
GAACATGAATTAACCTCAAT+AGG + chr6_4:3969474-3969493 None:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG - chr6_4:3969544-3969563 Msa0971860:intron 30.0%
GATGTGAATTTATTGGATGA+CGG - chr6_4:3969730-3969749 Msa0971860:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG - chr6_4:3970138-3970157 Msa0971860:intron 30.0%
AATATCAACCATAATCAGCA+GGG + chr6_4:3970192-3970211 None:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG + chr6_4:3970229-3970248 None:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG - chr6_4:3970230-3970249 Msa0971860:intron 30.0%
TGTTAGTTGGGTATCAATTA+GGG - chr6_4:3970231-3970250 Msa0971860:intron 30.0%
AACCATAAATCACTACATAC+TGG - chr6_4:3970345-3970364 Msa0971860:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG + chr6_4:3970350-3970369 None:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG - chr6_4:3970391-3970410 Msa0971860:intron 30.0%
AGATGCAAAATTTGAACTTG+GGG + chr6_4:3970623-3970642 None:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG + chr6_4:3970625-3970644 None:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG - chr6_4:3970623-3970642 Msa0971860:CDS 30.0%
GCCAACCTTAATCAATTATA+AGG + chr6_4:3970710-3970729 None:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG + chr6_4:3970767-3970786 None:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG + chr6_4:3970768-3970787 None:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG + chr6_4:3970769-3970788 None:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG - chr6_4:3970797-3970816 Msa0971860:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG + chr6_4:3970873-3970892 None:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG - chr6_4:3970899-3970918 Msa0971860:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG - chr6_4:3970900-3970919 Msa0971860:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG - chr6_4:3970924-3970943 Msa0971860:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG + chr6_4:3970964-3970983 None:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG - chr6_4:3971004-3971023 Msa0971860:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG - chr6_4:3971550-3971569 Msa0971860:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG + chr6_4:3971571-3971590 None:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG + chr6_4:3971597-3971616 None:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG - chr6_4:3971618-3971637 Msa0971860:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG - chr6_4:3971623-3971642 Msa0971860:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG - chr6_4:3971707-3971726 Msa0971860:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG + chr6_4:3971867-3971886 None:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG + chr6_4:3971886-3971905 None:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG + chr6_4:3971902-3971921 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr6_4:3972004-3972023 None:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG + chr6_4:3972101-3972120 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG - chr6_4:3972311-3972330 Msa0971860:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG - chr6_4:3972312-3972331 Msa0971860:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG + chr6_4:3972484-3972503 None:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG - chr6_4:3972761-3972780 Msa0971860:CDS 30.0%
!! GTTTGAAAGTACCATGTTTG+TGG + chr6_4:3968994-3969013 None:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG + chr6_4:3969029-3969048 None:intergenic 35.0%
AGGTTGAAGAACTGTGAATA+TGG + chr6_4:3969044-3969063 None:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG + chr6_4:3969092-3969111 None:intergenic 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG + chr6_4:3969127-3969146 None:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG - chr6_4:3969371-3969390 Msa0971860:CDS 35.0%
! TCATGTAGAATCGATTCTAG+AGG - chr6_4:3970023-3970042 Msa0971860:intron 35.0%
ACCGTAATCTGACAACTATA+AGG + chr6_4:3970142-3970161 None:intergenic 35.0%
GAATATCAACCATAATCAGC+AGG + chr6_4:3970193-3970212 None:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG - chr6_4:3970202-3970221 Msa0971860:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG - chr6_4:3970218-3970237 Msa0971860:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG - chr6_4:3970219-3970238 Msa0971860:intron 35.0%
GTTAGTTGGGTATCAATTAG+GGG - chr6_4:3970232-3970251 Msa0971860:intron 35.0%
TTAGTTGGGTATCAATTAGG+GGG - chr6_4:3970233-3970252 Msa0971860:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG - chr6_4:3970289-3970308 Msa0971860:intron 35.0%
CGACTATTGATCATAGAGTT+TGG + chr6_4:3970417-3970436 None:intergenic 35.0%
GCATGAAATCAACCTCATTT+AGG + chr6_4:3970667-3970686 None:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG - chr6_4:3970956-3970975 Msa0971860:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG - chr6_4:3971090-3971109 Msa0971860:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG - chr6_4:3971094-3971113 Msa0971860:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG - chr6_4:3971095-3971114 Msa0971860:intron 35.0%
CAACATAGCAGAACATAGAT+AGG + chr6_4:3971136-3971155 None:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG - chr6_4:3971137-3971156 Msa0971860:intron 35.0%
! TCTCAAAACTGAGGAGATTT+TGG - chr6_4:3971183-3971202 Msa0971860:intron 35.0%
! AAAACTGAGGAGATTTTGGA+AGG - chr6_4:3971187-3971206 Msa0971860:intron 35.0%
CTCAAACGACATTGAATTTG+AGG - chr6_4:3971228-3971247 Msa0971860:intron 35.0%
TAGTCCAGGAAAAAATAGTC+TGG - chr6_4:3971564-3971583 Msa0971860:intron 35.0%
CGGCACATATACAAAATTCA+AGG - chr6_4:3971643-3971662 Msa0971860:intron 35.0%
CTAGGAAAATTCATTGCGAT+TGG + chr6_4:3971868-3971887 None:intergenic 35.0%
GGAATATCTGTCATACATCT+TGG + chr6_4:3971970-3971989 None:intergenic 35.0%
!! AAAATGTTCTAGAGAACGTG+TGG - chr6_4:3972057-3972076 Msa0971860:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG - chr6_4:3972282-3972301 Msa0971860:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG - chr6_4:3972768-3972787 Msa0971860:CDS 35.0%
CAAACTAGTGAAGGAAAAAC+TGG + chr6_4:3972867-3972886 None:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG + chr6_4:3972876-3972895 None:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG - chr6_4:3972875-3972894 Msa0971860:five_prime_UTR 35.0%
! AAGATGATGGTGATGAAGTG+AGG + chr6_4:3969016-3969035 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG + chr6_4:3969064-3969083 None:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG + chr6_4:3969078-3969097 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG + chr6_4:3969124-3969143 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG + chr6_4:3969248-3969267 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG - chr6_4:3969246-3969265 Msa0971860:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG - chr6_4:3969263-3969282 Msa0971860:CDS 40.0%
AGGATTATGAGTGATGAAGG+TGG - chr6_4:3969266-3969285 Msa0971860:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG - chr6_4:3969375-3969394 Msa0971860:CDS 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG - chr6_4:3969376-3969395 Msa0971860:CDS 40.0%
AGTGACTTGAGCAACAAACT+TGG - chr6_4:3969957-3969976 Msa0971860:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG - chr6_4:3969958-3969977 Msa0971860:intron 40.0%
TAGTTGGGTATCAATTAGGG+GGG - chr6_4:3970234-3970253 Msa0971860:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG + chr6_4:3970960-3970979 None:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG - chr6_4:3971011-3971030 Msa0971860:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG - chr6_4:3971069-3971088 Msa0971860:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG - chr6_4:3971096-3971115 Msa0971860:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG - chr6_4:3971252-3971271 Msa0971860:intron 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG + chr6_4:3971300-3971319 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG - chr6_4:3971675-3971694 Msa0971860:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG + chr6_4:3971692-3971711 None:intergenic 40.0%
ATTGCGATTGGGACTAATCA+AGG + chr6_4:3971856-3971875 None:intergenic 40.0%
GACAGATATTCCTGCTCTTT+CGG - chr6_4:3971978-3971997 Msa0971860:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG - chr6_4:3972325-3972344 Msa0971860:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG - chr6_4:3972397-3972416 Msa0971860:intron 40.0%
CTCTCATCTTCTGTCTCTAT+AGG + chr6_4:3972430-3972449 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG - chr6_4:3972428-3972447 Msa0971860:intron 40.0%
AAAACAAGAGATTCGACGCA+TGG - chr6_4:3972492-3972511 Msa0971860:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG - chr6_4:3972523-3972542 Msa0971860:CDS 40.0%
CAAAGTAGAAGATGGAGGTA+TGG - chr6_4:3972531-3972550 Msa0971860:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG + chr6_4:3972580-3972599 None:intergenic 40.0%
!! TTTGGTGATGAACATGGTGG+TGG + chr6_4:3969121-3969140 None:intergenic 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG - chr6_4:3969233-3969252 Msa0971860:CDS 45.0%
ATGAGTGATGAAGGTGGTGT+TGG - chr6_4:3969272-3969291 Msa0971860:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG - chr6_4:3969314-3969333 Msa0971860:CDS 45.0%
AAACCCTGTGGAACGATTCA+GGG - chr6_4:3970273-3970292 Msa0971860:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG + chr6_4:3970279-3970298 None:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG + chr6_4:3970280-3970299 None:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG - chr6_4:3970759-3970778 Msa0971860:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG + chr6_4:3970764-3970783 None:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG - chr6_4:3971151-3971170 Msa0971860:intron 45.0%
TGCAGGTCTTCTCAAAACTG+AGG - chr6_4:3971174-3971193 Msa0971860:intron 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG - chr6_4:3971193-3971212 Msa0971860:intron 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG - chr6_4:3971197-3971216 Msa0971860:intron 45.0%
CTCTCTTGCTTCATCCATCA+TGG + chr6_4:3971269-3971288 None:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG - chr6_4:3971267-3971286 Msa0971860:intron 45.0%
! CTTTGCTATGCCAACATGGT+TGG + chr6_4:3971688-3971707 None:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG - chr6_4:3972402-3972421 Msa0971860:intron 45.0%
TCGACGCATGGTTAAAGAGA+TGG - chr6_4:3972504-3972523 Msa0971860:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG - chr6_4:3972526-3972545 Msa0971860:CDS 45.0%
TGCTGCTAAGCCTCTATCAA+AGG - chr6_4:3972567-3972586 Msa0971860:CDS 45.0%
AGGCTCAAACACCTTGCTTT+AGG + chr6_4:3972707-3972726 None:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG - chr6_4:3972709-3972728 Msa0971860:CDS 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG - chr6_4:3972720-3972739 Msa0971860:CDS 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG - chr6_4:3972721-3972740 Msa0971860:CDS 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG - chr6_4:3972722-3972741 Msa0971860:CDS 45.0%
TTCCCCTATGAGTAGCCAAA+AGG + chr6_4:3972727-3972746 None:intergenic 45.0%
! AGCTGCTACCCTGCTGATTA+TGG - chr6_4:3970181-3970200 Msa0971860:intron 50.0%
TGGGTATCAATTAGGGGGGT+TGG - chr6_4:3970238-3970257 Msa0971860:intron 50.0%
GGGTATCAATTAGGGGGGTT+GGG - chr6_4:3970239-3970258 Msa0971860:intron 50.0%
GGTATCAATTAGGGGGGTTG+GGG - chr6_4:3970240-3970259 Msa0971860:intron 50.0%
GTATCAATTAGGGGGGTTGG+GGG - chr6_4:3970241-3970260 Msa0971860:intron 50.0%
GAAACCCTGTGGAACGATTC+AGG - chr6_4:3970272-3970291 Msa0971860:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG + chr6_4:3970757-3970776 None:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG - chr6_4:3971102-3971121 Msa0971860:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG + chr6_4:3972359-3972378 None:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG + chr6_4:3972367-3972386 None:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG + chr6_4:3972565-3972584 None:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG + chr6_4:3969115-3969134 None:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG - chr6_4:3971157-3971176 Msa0971860:intron 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG - chr6_4:3971203-3971222 Msa0971860:intron 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG - chr6_4:3971987-3972006 Msa0971860:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG + chr6_4:3971991-3972010 None:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG + chr6_4:3972358-3972377 None:intergenic 55.0%
CGTTCCACAGGGTTTCACCC+TGG + chr6_4:3970268-3970287 None:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG - chr6_4:3971107-3971126 Msa0971860:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG - chr6_4:3972348-3972367 Msa0971860:intron 60.0%
ACCTCCCGCTGTTCCAATGG+AGG - chr6_4:3972351-3972370 Msa0971860:intron 60.0%
ACCTCCATTGGAACAGCGGG+AGG + chr6_4:3972355-3972374 None:intergenic 60.0%
ATTAGGGGGGTTGGGGGTCC+AGG - chr6_4:3970247-3970266 Msa0971860:intron 65.0%
TTAGGGGGGTTGGGGGTCCA+GGG - chr6_4:3970248-3970267 Msa0971860:intron 65.0%
GGGTCCAGGGTGAAACCCTG+TGG - chr6_4:3970261-3970280 Msa0971860:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG - chr6_4:3971106-3971125 Msa0971860:intron 65.0%
GTAGGCAGGGGATCAGGCAG+GGG - chr6_4:3971108-3971127 Msa0971860:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 3968927 3972934 3968927 ID=Msa0971860;Name=Msa0971860
chr6_4 mRNA 3968927 3972934 3968927 ID=Msa0971860-mRNA-1;Parent=Msa0971860;Name=Msa0971860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|3|286|298
chr6_4 exon 3968927 3969533 3968927 ID=Msa0971860-mRNA-1:exon:1736;Parent=Msa0971860-mRNA-1
chr6_4 exon 3970573 3970749 3970573 ID=Msa0971860-mRNA-1:exon:1735;Parent=Msa0971860-mRNA-1
chr6_4 exon 3972464 3972934 3972464 ID=Msa0971860-mRNA-1:exon:1734;Parent=Msa0971860-mRNA-1
chr6_4 five_prime_UTR 3972863 3972934 3972863 ID=Msa0971860-mRNA-1:five_prime_utr;Parent=Msa0971860-mRNA-1
chr6_4 CDS 3972464 3972862 3972464 ID=Msa0971860-mRNA-1:cds;Parent=Msa0971860-mRNA-1
chr6_4 CDS 3970573 3970749 3970573 ID=Msa0971860-mRNA-1:cds;Parent=Msa0971860-mRNA-1
chr6_4 CDS 3969213 3969533 3969213 ID=Msa0971860-mRNA-1:cds;Parent=Msa0971860-mRNA-1
chr6_4 three_prime_UTR 3968927 3969212 3968927 ID=Msa0971860-mRNA-1:three_prime_utr;Parent=Msa0971860-mRNA-1
Gene Sequence

>Msa0971860

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAGTTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa0971860

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*