Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469720 | XP_003602042.2 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469720 | sp|Q70DU8|AL3H1_ARATH | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469720 | G7J4Y0 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076640 | Msa0469720 | 0.802954 | 4.390233e-49 | -8.615850e-47 |
| Msa0374290 | Msa0469720 | 0.903235 | 4.278854e-79 | -8.615850e-47 |
| Msa0469720 | Msa0484700 | 0.803303 | 3.717221e-49 | -8.615850e-47 |
| Msa0469720 | Msa0515540 | 0.940501 | 2.095828e-100 | -8.615850e-47 |
| Msa0469720 | Msa0515590 | 0.940159 | 3.752570e-100 | -8.615850e-47 |
| Msa0469720 | Msa0931420 | 0.990111 | 4.157947e-181 | -8.615850e-47 |
| Msa0469720 | Msa1156490 | 0.805946 | 1.044168e-49 | -8.615850e-47 |
| Msa0469720 | Msa1302340 | 0.802205 | 6.264605e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469720 | MtrunA17_Chr3g0124811 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 984 |
| Msa0469720 | MtrunA17_Chr8g0384741 | 66.122 | 490 | 166 | 0 | 1 | 490 | 52 | 541 | 0.0 | 706 |
| Msa0469720 | MtrunA17_Chr1g0159811 | 78.897 | 417 | 88 | 0 | 8 | 424 | 6 | 422 | 0.0 | 699 |
| Msa0469720 | MtrunA17_Chr8g0372381 | 47.548 | 469 | 246 | 0 | 15 | 483 | 6 | 474 | 8.52e-166 | 477 |
| Msa0469720 | MtrunA17_Chr2g0328781 | 46.764 | 479 | 252 | 1 | 13 | 488 | 15 | 493 | 1.34e-159 | 462 |
| Msa0469720 | MtrunA17_Chr4g0032441 | 50.881 | 454 | 220 | 1 | 22 | 472 | 9 | 462 | 3.30e-146 | 427 |
| Msa0469720 | MtrunA17_Chr3g0129271 | 44.444 | 189 | 102 | 1 | 185 | 370 | 31 | 219 | 6.41e-51 | 174 |
| Msa0469720 | MtrunA17_Chr3g0118121 | 29.954 | 434 | 285 | 9 | 27 | 447 | 58 | 485 | 6.23e-40 | 150 |
| Msa0469720 | MtrunA17_Chr4g0059521 | 29.017 | 417 | 282 | 9 | 40 | 447 | 74 | 485 | 2.61e-39 | 149 |
| Msa0469720 | MtrunA17_Chr2g0294411 | 24.777 | 448 | 307 | 8 | 36 | 467 | 106 | 539 | 4.22e-39 | 149 |
| Msa0469720 | MtrunA17_Chr3g0118081 | 29.263 | 434 | 288 | 10 | 27 | 447 | 88 | 515 | 8.54e-38 | 145 |
| Msa0469720 | MtrunA17_Chr2g0310091 | 27.874 | 348 | 242 | 8 | 114 | 455 | 193 | 537 | 1.09e-32 | 130 |
| Msa0469720 | MtrunA17_Chr8g0365221 | 26.790 | 433 | 299 | 11 | 26 | 448 | 108 | 532 | 5.22e-30 | 123 |
| Msa0469720 | MtrunA17_Chr4g0059221 | 26.991 | 452 | 298 | 13 | 14 | 448 | 99 | 535 | 1.11e-29 | 122 |
| Msa0469720 | MtrunA17_Chr8g0390651 | 28.070 | 342 | 230 | 9 | 117 | 448 | 159 | 494 | 1.64e-27 | 115 |
| Msa0469720 | MtrunA17_Chr3g0117861 | 27.212 | 452 | 297 | 14 | 14 | 448 | 97 | 533 | 4.75e-27 | 114 |
| Msa0469720 | MtrunA17_Chr4g0074171 | 28.743 | 334 | 229 | 7 | 118 | 448 | 158 | 485 | 4.50e-26 | 110 |
| Msa0469720 | MtrunA17_Chr8g0390631 | 29.275 | 345 | 222 | 11 | 117 | 448 | 150 | 485 | 1.17e-25 | 109 |
| Msa0469720 | MtrunA17_Chr6g0485301 | 28.319 | 339 | 233 | 8 | 117 | 448 | 158 | 493 | 4.56e-25 | 108 |
| Msa0469720 | MtrunA17_Chr6g0485311 | 27.515 | 338 | 235 | 8 | 117 | 447 | 156 | 490 | 5.60e-24 | 104 |
| Msa0469720 | MtrunA17_Chr1g0149961 | 25.000 | 460 | 318 | 12 | 5 | 448 | 37 | 485 | 1.78e-23 | 103 |
| Msa0469720 | MtrunA17_Chr4g0009161 | 42.202 | 109 | 59 | 2 | 185 | 289 | 116 | 224 | 3.36e-20 | 89.4 |
| Msa0469720 | MtrunA17_Chr1g0159821 | 52.778 | 72 | 34 | 0 | 10 | 81 | 8 | 79 | 1.72e-19 | 84.3 |
| Msa0469720 | MtrunA17_Chr2g0279751 | 28.710 | 310 | 196 | 10 | 115 | 408 | 147 | 447 | 2.10e-18 | 87.8 |
| Msa0469720 | MtrunA17_Chr4g0049641 | 27.036 | 307 | 205 | 8 | 115 | 408 | 174 | 474 | 2.39e-18 | 87.8 |
| Msa0469720 | MtrunA17_Chr2g0300801 | 25.685 | 292 | 194 | 12 | 118 | 393 | 155 | 439 | 3.55e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469720 | AT1G44170.1 | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Msa0469720 | AT1G44170.2 | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Msa0469720 | AT4G34240.1 | 64.644 | 478 | 169 | 0 | 13 | 490 | 70 | 547 | 0.0 | 647 |
| Msa0469720 | AT4G34240.4 | 64.644 | 478 | 169 | 0 | 13 | 490 | 55 | 532 | 0.0 | 647 |
| Msa0469720 | AT1G44170.3 | 70.560 | 411 | 121 | 0 | 78 | 488 | 9 | 419 | 0.0 | 634 |
| Msa0469720 | AT4G34240.3 | 67.574 | 404 | 131 | 0 | 87 | 490 | 2 | 405 | 0.0 | 569 |
| Msa0469720 | AT4G36250.1 | 47.609 | 460 | 238 | 1 | 16 | 472 | 6 | 465 | 1.23e-162 | 469 |
| Msa0469720 | AT4G34240.2 | 66.667 | 321 | 107 | 0 | 13 | 333 | 70 | 390 | 1.03e-150 | 436 |
| Msa0469720 | AT3G66658.1 | 27.146 | 431 | 296 | 6 | 36 | 452 | 106 | 532 | 8.79e-44 | 162 |
| Msa0469720 | AT3G66658.2 | 27.361 | 413 | 282 | 6 | 36 | 434 | 106 | 514 | 2.61e-43 | 162 |
| Msa0469720 | AT1G74920.1 | 27.571 | 457 | 304 | 12 | 15 | 449 | 37 | 488 | 4.33e-42 | 157 |
| Msa0469720 | AT1G74920.2 | 28.810 | 420 | 284 | 10 | 40 | 449 | 69 | 483 | 9.40e-42 | 156 |
| Msa0469720 | AT3G48170.1 | 27.338 | 417 | 289 | 9 | 40 | 447 | 74 | 485 | 1.27e-36 | 142 |
| Msa0469720 | AT1G79440.1 | 28.824 | 340 | 233 | 8 | 114 | 447 | 184 | 520 | 1.37e-33 | 133 |
| Msa0469720 | AT1G23800.1 | 27.455 | 448 | 301 | 13 | 14 | 448 | 89 | 525 | 1.57e-33 | 133 |
| Msa0469720 | AT3G48000.1 | 26.549 | 452 | 300 | 14 | 14 | 448 | 93 | 529 | 1.22e-28 | 119 |
| Msa0469720 | AT3G24503.1 | 27.729 | 339 | 235 | 7 | 117 | 448 | 157 | 492 | 2.63e-27 | 115 |
| Msa0469720 | AT2G24270.3 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.19e-25 | 107 |
| Msa0469720 | AT2G24270.1 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.19e-25 | 107 |
| Msa0469720 | AT2G24270.4 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.37e-25 | 107 |
| Msa0469720 | AT2G24270.2 | 28.707 | 317 | 217 | 7 | 118 | 431 | 198 | 508 | 1.15e-24 | 107 |
| Msa0469720 | AT2G14170.2 | 27.378 | 347 | 228 | 12 | 117 | 447 | 139 | 477 | 5.21e-18 | 87.0 |
| Msa0469720 | AT2G14170.1 | 27.378 | 347 | 228 | 12 | 117 | 447 | 248 | 586 | 5.52e-18 | 87.4 |
| Msa0469720 | AT1G23800.2 | 30.078 | 256 | 155 | 9 | 14 | 253 | 89 | 336 | 3.90e-17 | 84.0 |
| Msa0469720 | AT2G14170.3 | 27.273 | 308 | 203 | 10 | 115 | 408 | 246 | 546 | 1.10e-16 | 83.2 |
| Msa0469720 | AT1G54100.2 | 21.453 | 289 | 210 | 8 | 118 | 393 | 154 | 438 | 1.58e-13 | 73.2 |
| Msa0469720 | AT1G54100.1 | 21.453 | 289 | 210 | 8 | 118 | 393 | 154 | 438 | 1.58e-13 | 73.2 |
Find 129 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCCAATTCTGTCTTTA+AGG | 0.114075 | 3_3:-71708645 | None:intergenic |
| GCTATGTTACTATTGATTTC+TGG | 0.128525 | 3_3:-71705459 | None:intergenic |
| GGGAAAATTTCATACCAATT+TGG | 0.160031 | 3_3:-71708551 | None:intergenic |
| GTTTCTGGCAAGGTTGTTTA+TGG | 0.170486 | 3_3:+71708764 | Msa0469720:CDS |
| TCACTGCTGGCGAACTTATT+AGG | 0.192129 | 3_3:+71707728 | Msa0469720:CDS |
| GGAAAATTTCATACCAATTT+GGG | 0.208738 | 3_3:-71708550 | None:intergenic |
| ACAGAATTGGAAAGCTTCTT+TGG | 0.227872 | 3_3:+71708653 | Msa0469720:CDS |
| TTGGACGACGAGAAGGTTTC+TGG | 0.237632 | 3_3:+71708749 | Msa0469720:CDS |
| TGGTTCATACTTTGCCATTT+GGG | 0.248058 | 3_3:+71709357 | Msa0469720:CDS |
| GTGGTTCATACTTTGCCATT+TGG | 0.266390 | 3_3:+71709356 | Msa0469720:CDS |
| CTATGTTACTATTGATTTCT+GGG | 0.296959 | 3_3:-71705458 | None:intergenic |
| TTTGTTGTTATAACGTAATC+AGG | 0.304335 | 3_3:-71708517 | None:intergenic |
| CACTGCTGGCGAACTTATTA+GGG | 0.310991 | 3_3:+71707729 | Msa0469720:CDS |
| GATAAATCATTGGATTCTAT+TGG | 0.315485 | 3_3:-71708683 | None:intergenic |
| TGATTTCTGGGATAATAATA+AGG | 0.317495 | 3_3:-71705446 | None:intergenic |
| ACAGCTAGACGGATAATTTC+AGG | 0.342418 | 3_3:+71708457 | Msa0469720:CDS |
| GAGAGCAGAGTGGAAATATT+TGG | 0.344833 | 3_3:-71705414 | None:intergenic |
| ACACCTTACACCAGTCGTTC+TGG | 0.352826 | 3_3:+71708074 | Msa0469720:CDS |
| CTAGTCGCCGGCGATGTTAC+TGG | 0.358446 | 3_3:+71709533 | Msa0469720:CDS |
| GGATTCAAATGTCAATTTAG+AGG | 0.363970 | 3_3:+71708125 | Msa0469720:CDS |
| TTTATTCTTACCGTGATAAT+GGG | 0.376274 | 3_3:-71708968 | None:intergenic |
| CTGAGGGTGAGCTTTAATTC+TGG | 0.376691 | 3_3:+71705565 | Msa0469720:CDS |
| TTCTAACCACTTTGCTCGCT+TGG | 0.378374 | 3_3:+71708718 | Msa0469720:CDS |
| TGATGCCTTAAAGACAGAAT+TGG | 0.379258 | 3_3:+71708640 | Msa0469720:CDS |
| AACACTACACCAAGTGGTTC+AGG | 0.380052 | 3_3:-71707221 | None:intergenic |
| TCCAGCCTCGTCTTCACTGC+TGG | 0.400434 | 3_3:+71707715 | Msa0469720:CDS |
| TTCTGCTTTGTATCAGTGTA+AGG | 0.401680 | 3_3:-71709497 | None:intergenic |
| GGAGTTGGTGACAGTGGAAT+GGG | 0.406759 | 3_3:+71709380 | Msa0469720:CDS |
| TTGAAAACAAATTAAAGCTT+AGG | 0.408744 | 3_3:-71709582 | None:intergenic |
| TACAATAAAATCAGAACAAA+TGG | 0.409251 | 3_3:-71709632 | None:intergenic |
| GAAGATGGTTGATGAACAAC+AGG | 0.411988 | 3_3:+71705636 | Msa0469720:CDS |
| GGGAGTTGGTGACAGTGGAA+TGG | 0.415308 | 3_3:+71709379 | Msa0469720:CDS |
| CTGTCCCTTGATCCAGTTGT+TGG | 0.425314 | 3_3:+71707644 | Msa0469720:CDS |
| CACAATGCGCGATAAATCAT+TGG | 0.432655 | 3_3:-71708693 | None:intergenic |
| TACAAATGACAACAAGTTCA+AGG | 0.442505 | 3_3:+71709176 | Msa0469720:CDS |
| GCTGCTATAGCTCCAACAAC+TGG | 0.444023 | 3_3:-71707656 | None:intergenic |
| ACACCAGTCGTTCTGGAGCT+TGG | 0.446970 | 3_3:+71708081 | Msa0469720:CDS |
| ATAATGAGTGAGGAGATCTT+TGG | 0.458834 | 3_3:+71708935 | Msa0469720:CDS |
| TGCTCGCTTGGTAAAGATGT+TGG | 0.468945 | 3_3:+71708730 | Msa0469720:CDS |
| TAGCAATAGTATAAAATGTC+GGG | 0.472828 | 3_3:+71705478 | Msa0469720:exon |
| TTTGTGAAGAATGTTTCTGC+TGG | 0.473206 | 3_3:+71709204 | Msa0469720:CDS |
| GGTACTATTTCAGCTGAAGA+AGG | 0.475298 | 3_3:-71707200 | None:intergenic |
| ACAATGGATGGCCCCAGAAA+AGG | 0.476780 | 3_3:+71707042 | Msa0469720:CDS |
| ACATTTGAATCCACAACAGT+TGG | 0.479478 | 3_3:-71708114 | None:intergenic |
| GGTTGTTTATGGAGGTGAAA+AGG | 0.487907 | 3_3:+71708775 | Msa0469720:CDS |
| CTGCATTGTTGCAACAAAAG+TGG | 0.494247 | 3_3:+71707807 | Msa0469720:CDS |
| CTTGGAACAGGTGAACAAGC+TGG | 0.495328 | 3_3:+71709098 | Msa0469720:intron |
| CGGAGAAGCGGCGTCGTCGT+TGG | 0.495817 | 3_3:+71705534 | Msa0469720:CDS |
| TAGCTCCAACAACTGGATCA+AGG | 0.496212 | 3_3:-71707649 | None:intergenic |
| TGGAGCGTCTAATACAATAG+TGG | 0.501825 | 3_3:-71708900 | None:intergenic |
| GGTTCATACTTTGCCATTTG+GGG | 0.508394 | 3_3:+71709358 | Msa0469720:CDS |
| GACGGATAATTTCAGGAAAG+TGG | 0.508972 | 3_3:+71708464 | Msa0469720:CDS |
| CAGAATTAAAGCTCACCCTC+AGG | 0.511369 | 3_3:-71705564 | None:intergenic |
| TTACGGGTGATGCATCGATA+AGG | 0.514070 | 3_3:+71709468 | Msa0469720:CDS |
| GCTCCAGAACGACTGGTGTA+AGG | 0.516414 | 3_3:-71708077 | None:intergenic |
| TGAAGATCAGTCACAGAAGA+AGG | 0.516470 | 3_3:+71705501 | Msa0469720:CDS |
| GTAAATAAATATGCAGCAAG+TGG | 0.517979 | 3_3:-71709156 | None:intergenic |
| GCCAGCAGTGAAGACGAGGC+TGG | 0.518366 | 3_3:-71707716 | None:intergenic |
| AACGTAATCAGGAGAAATGC+AGG | 0.519634 | 3_3:-71708506 | None:intergenic |
| AGGAAAATCTCCAACTGTTG+TGG | 0.520349 | 3_3:+71708104 | Msa0469720:CDS |
| ATCTATAAGAGTTGTGGAGG+GGG | 0.520366 | 3_3:+71707769 | Msa0469720:CDS |
| CAGAAGAAGGTGGTGTTTGA+CGG | 0.522711 | 3_3:+71705514 | Msa0469720:CDS |
| AGCGGCGTCGTCGTTGGTGA+AGG | 0.523107 | 3_3:+71705540 | Msa0469720:CDS |
| CCTCCAAGCTCCAGAACGAC+TGG | 0.525093 | 3_3:-71708084 | None:intergenic |
| TTTGTGAGTAAAAGCGTCAA+AGG | 0.526185 | 3_3:-71709423 | None:intergenic |
| GGAAAGTGGTGCTGTAACAA+TGG | 0.528505 | 3_3:+71708478 | Msa0469720:CDS |
| CTCATCTATAAGAGTTGTGG+AGG | 0.535901 | 3_3:+71707766 | Msa0469720:CDS |
| CCAGTCGTTCTGGAGCTTGG+AGG | 0.536552 | 3_3:+71708084 | Msa0469720:CDS |
| ATAGCAATAGTATAAAATGT+CGG | 0.538437 | 3_3:+71705477 | Msa0469720:exon |
| GTTGTTGGAGCTATAGCAGC+CGG | 0.541671 | 3_3:+71707659 | Msa0469720:CDS |
| TGCTTTGTATCAGTGTAAGG+CGG | 0.541950 | 3_3:-71709494 | None:intergenic |
| GTAAGACACGAAGTTATGAA+TGG | 0.543765 | 3_3:+71705587 | Msa0469720:CDS |
| AGCTCCAACAACTGGATCAA+GGG | 0.544547 | 3_3:-71707648 | None:intergenic |
| TCTGGCAAGGTTGTTTATGG+AGG | 0.544720 | 3_3:+71708767 | Msa0469720:CDS |
| TTATGAATGGAGAGTATCGC+AGG | 0.547189 | 3_3:+71705600 | Msa0469720:CDS |
| TACAAAGCAGAAATTGATGA+AGG | 0.548509 | 3_3:+71709508 | Msa0469720:CDS |
| GTGAAGAATGTTTCTGCTGG+GGG | 0.549524 | 3_3:+71709207 | Msa0469720:CDS |
| TGCATTGTTGCAACAAAAGT+GGG | 0.550398 | 3_3:+71707808 | Msa0469720:CDS |
| TAGTGTTAGTCATCTCTGCT+TGG | 0.552108 | 3_3:+71707237 | Msa0469720:CDS |
| TAACTCATCTATAAGAGTTG+TGG | 0.553446 | 3_3:+71707763 | Msa0469720:CDS |
| CGACGAGAAGGTTTCTGGCA+AGG | 0.555363 | 3_3:+71708754 | Msa0469720:CDS |
| TTTCAAGCGGTGGTTTAGCA+AGG | 0.558890 | 3_3:-71705687 | None:intergenic |
| CTCATTATCAGAGAATCTTG+TGG | 0.559354 | 3_3:-71708920 | None:intergenic |
| TTGTGAAGAATGTTTCTGCT+GGG | 0.560631 | 3_3:+71709205 | Msa0469720:CDS |
| TCCATTGCTTCCCATTATCA+CGG | 0.561243 | 3_3:+71708958 | Msa0469720:CDS |
| TTGATGAAGGCTCTAGTCGC+CGG | 0.564772 | 3_3:+71709521 | Msa0469720:CDS |
| GAGGCTGGAGCAATTTCTGA+TGG | 0.566074 | 3_3:-71707701 | None:intergenic |
| CGTCGTTGGTGAAGGACCTG+AGG | 0.569144 | 3_3:+71705548 | Msa0469720:CDS |
| GAAAATTTCATACCAATTTG+GGG | 0.571184 | 3_3:-71708549 | None:intergenic |
| ACAAATGGTACAGCACTAGC+AGG | 0.573164 | 3_3:-71709617 | None:intergenic |
| CGCTGAAGGAATTGAAACAA+TGG | 0.574396 | 3_3:+71707026 | Msa0469720:CDS |
| GGAGCGTCTAATACAATAGT+GGG | 0.580198 | 3_3:-71708899 | None:intergenic |
| GTGGAATGGGTGCATACCAT+GGG | 0.581183 | 3_3:+71709393 | Msa0469720:CDS |
| GCTTTGTATCAGTGTAAGGC+GGG | 0.584751 | 3_3:-71709493 | None:intergenic |
| GTTCATACTTTGCCATTTGG+GGG | 0.589580 | 3_3:+71709359 | Msa0469720:CDS |
| AAAGATGTTGGACGACGAGA+AGG | 0.593143 | 3_3:+71708742 | Msa0469720:CDS |
| GAAGGAATTGAAACAATGGA+TGG | 0.595708 | 3_3:+71707030 | Msa0469720:CDS |
| ACCGTGATAATGGGAAGCAA+TGG | 0.596325 | 3_3:-71708959 | None:intergenic |
| GGTACAGCACTAGCAGGTAT+CGG | 0.599656 | 3_3:-71709611 | None:intergenic |
| CAGGTAATGGAAAAGTGGGA+CGG | 0.603039 | 3_3:+71708028 | Msa0469720:intron |
| CTCATGTGAAGTCACGCTGA+AGG | 0.604871 | 3_3:+71707012 | Msa0469720:CDS |
| TCATCTATAAGAGTTGTGGA+GGG | 0.608439 | 3_3:+71707767 | Msa0469720:CDS |
| TTTACTAGGTTACAGCTAGA+CGG | 0.610366 | 3_3:+71708446 | Msa0469720:intron |
| AGCTTCGATTTGATCAACGC+AGG | 0.611901 | 3_3:+71709126 | Msa0469720:CDS |
| GGTGGTGTTTGACGGAGAAG+CGG | 0.613325 | 3_3:+71705522 | Msa0469720:CDS |
| TAGACAACAGTTTCAAGCGG+TGG | 0.617970 | 3_3:-71705697 | None:intergenic |
| GTCGTTGGTGAAGGACCTGA+GGG | 0.624859 | 3_3:+71705549 | Msa0469720:CDS |
| GAACTTATTAGGGAGGTACA+TGG | 0.626641 | 3_3:+71707739 | Msa0469720:CDS |
| AAAATTTCATACCAATTTGG+GGG | 0.628857 | 3_3:-71708548 | None:intergenic |
| GTTCGCCAGCAGTGAAGACG+AGG | 0.630975 | 3_3:-71707720 | None:intergenic |
| AACAACACCAGTAACATCGC+CGG | 0.631565 | 3_3:-71709540 | None:intergenic |
| CATCTATAAGAGTTGTGGAG+GGG | 0.632599 | 3_3:+71707768 | Msa0469720:CDS |
| GAAATAGTACCTGAACCACT+TGG | 0.636077 | 3_3:+71707212 | Msa0469720:CDS |
| AGATTCTCTGATAATGAGTG+AGG | 0.639886 | 3_3:+71708925 | Msa0469720:CDS |
| ATGACTAACACTACACCAAG+TGG | 0.646296 | 3_3:-71707227 | None:intergenic |
| CAATGCAGTAGTTTCATCAA+CGG | 0.649582 | 3_3:-71707792 | None:intergenic |
| GAGATAAACTGAGAGCAGAG+TGG | 0.653402 | 3_3:-71705424 | None:intergenic |
| TGTGAAGAATGTTTCTGCTG+GGG | 0.658052 | 3_3:+71709206 | Msa0469720:CDS |
| TGCTGGCGAACTTATTAGGG+AGG | 0.664145 | 3_3:+71707732 | Msa0469720:CDS |
| AAAAGTGGGACGGATAGTGA+TGG | 0.666797 | 3_3:+71708038 | Msa0469720:CDS |
| AGTGGGACGGATAGTGATGG+CGG | 0.669702 | 3_3:+71708041 | Msa0469720:CDS |
| AGTGGAATGGGTGCATACCA+TGG | 0.672625 | 3_3:+71709392 | Msa0469720:CDS |
| TCTTTACCAAGCGAGCAAAG+TGG | 0.678259 | 3_3:-71708724 | None:intergenic |
| GCTTGAAACTGTTGTCTACG+AGG | 0.679853 | 3_3:+71705702 | Msa0469720:CDS |
| TATAGCAGCCGGAAACGCCG+TGG | 0.683688 | 3_3:+71707670 | Msa0469720:CDS |
| TCGTAGACAACAGTTTCAAG+CGG | 0.691579 | 3_3:-71705700 | None:intergenic |
| CGTCAAAGGAGAATTTCCCA+TGG | 0.693948 | 3_3:-71709409 | None:intergenic |
| ATGCATCACCCGTAAAACCA+CGG | 0.701105 | 3_3:-71709460 | None:intergenic |
| AGATCAGTCACAGAAGAAGG+TGG | 0.702169 | 3_3:+71705504 | Msa0469720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATATATATATGATTTTTA+TGG | + | chr3_3:71705751-71705770 | Msa0469720:intron | 10.0% |
| !!! | TTTTATGTTTTCTTTAATAA+AGG | + | chr3_3:71705987-71706006 | Msa0469720:intron | 10.0% |
| !!! | ATTCAACTTAAAATATTTTT+GGG | + | chr3_3:71706756-71706775 | Msa0469720:intron | 10.0% |
| !!! | TATATCTAAATCAATTTGTT+AGG | + | chr3_3:71706254-71706273 | Msa0469720:intron | 15.0% |
| !!! | GATTCAACTTAAAATATTTT+TGG | + | chr3_3:71706755-71706774 | Msa0469720:intron | 15.0% |
| !! | TAGATTATTAAAGAAACTAA+AGG | - | chr3_3:71707583-71707602 | None:intergenic | 15.0% |
| !!! | TAAAGTTAAATTGTTTTCAA+TGG | - | chr3_3:71708224-71708243 | None:intergenic | 15.0% |
| !!! | TAAATTAATTTGTGTTTACT+AGG | + | chr3_3:71708432-71708451 | Msa0469720:intron | 15.0% |
| !! | ATAGCAATAGTATAAAATGT+CGG | + | chr3_3:71705477-71705496 | Msa0469720:exon | 20.0% |
| !!! | ATAAACATCATAAGTTTTCA+AGG | + | chr3_3:71705863-71705882 | Msa0469720:intron | 20.0% |
| !!! | TATTCTTGAGATTTTTCATT+TGG | + | chr3_3:71705892-71705911 | Msa0469720:intron | 20.0% |
| !!! | TATGTTTTCTTTAATAAAGG+AGG | + | chr3_3:71705990-71706009 | Msa0469720:intron | 20.0% |
| !!! | AAAGCATTTTTCTTTTTGAA+GGG | - | chr3_3:71706036-71706055 | None:intergenic | 20.0% |
| !!! | AAAAGCATTTTTCTTTTTGA+AGG | - | chr3_3:71706037-71706056 | None:intergenic | 20.0% |
| !!! | TTCACCTTCTTTTTTTTTTA+CGG | + | chr3_3:71706055-71706074 | Msa0469720:intron | 20.0% |
| !!! | TTCTGGAAAATATAAGTAAA+AGG | + | chr3_3:71706376-71706395 | Msa0469720:intron | 20.0% |
| !!! | TAAAAGGTGTATGTAAAATA+AGG | + | chr3_3:71706392-71706411 | Msa0469720:intron | 20.0% |
| !!! | AAAAGGTGTATGTAAAATAA+GGG | + | chr3_3:71706393-71706412 | Msa0469720:intron | 20.0% |
| !! | AAAAATAAACTTTGATTGAC+TGG | + | chr3_3:71706427-71706446 | Msa0469720:intron | 20.0% |
| !! | TTTAAAAATTTAGTATCCCT+TGG | + | chr3_3:71706779-71706798 | Msa0469720:intron | 20.0% |
| !!! | TATTTTGAATTTATGGAAAG+CGG | - | chr3_3:71706825-71706844 | None:intergenic | 20.0% |
| !!! | GTTACTCTATTTTGAATTTA+TGG | - | chr3_3:71706832-71706851 | None:intergenic | 20.0% |
| !! | TACAAATGTTACAAAATGTT+CGG | - | chr3_3:71706854-71706873 | None:intergenic | 20.0% |
| !!! | GTAACTAAACAAACATATTT+TGG | + | chr3_3:71706871-71706890 | Msa0469720:intron | 20.0% |
| !! | AGTTCCTTTAATAATATTTC+AGG | + | chr3_3:71707154-71707173 | Msa0469720:intron | 20.0% |
| !! | TTAGCCTGAAATATTATTAA+AGG | - | chr3_3:71707161-71707180 | None:intergenic | 20.0% |
| !! | AAGATATCGTGAAAAATTTA+TGG | - | chr3_3:71707410-71707429 | None:intergenic | 20.0% |
| !!! | TTTACCTTTTGTTATACAAA+TGG | + | chr3_3:71707452-71707471 | Msa0469720:intron | 20.0% |
| !!! | ATGGTTATGAATTGTTATTT+TGG | + | chr3_3:71707884-71707903 | Msa0469720:intron | 20.0% |
| !! | AAAATTCACAATACCAATAA+TGG | - | chr3_3:71707931-71707950 | None:intergenic | 20.0% |
| !!! | TAAGTAATTACTTGATTTTC+AGG | + | chr3_3:71708009-71708028 | Msa0469720:intron | 20.0% |
| !!! | ATTAAATTTTTCATCCAATC+AGG | + | chr3_3:71708323-71708342 | Msa0469720:intron | 20.0% |
| !! | TTAAGTCAATAATGAGTTAA+GGG | - | chr3_3:71708415-71708434 | None:intergenic | 20.0% |
| !! | TTTAAGTCAATAATGAGTTA+AGG | - | chr3_3:71708416-71708435 | None:intergenic | 20.0% |
| !!! | TTGTATCCAATTTAAAACAA+TGG | + | chr3_3:71709047-71709066 | Msa0469720:intron | 20.0% |
| !!! | TGTATCCAATTTAAAACAAT+GGG | + | chr3_3:71709048-71709067 | Msa0469720:intron | 20.0% |
| !! | TTGAAAACAAATTAAAGCTT+AGG | - | chr3_3:71709585-71709604 | None:intergenic | 20.0% |
| !! | TACAATAAAATCAGAACAAA+TGG | - | chr3_3:71709635-71709654 | None:intergenic | 20.0% |
| !!! | TAAAATAAACGTTTTAAGAG+AGG | + | chr3_3:71709693-71709712 | Msa0469720:three_prime_UTR | 20.0% |
| !!! | TGATTTCTGGGATAATAATA+AGG | - | chr3_3:71705449-71705468 | None:intergenic | 25.0% |
| !!! | CTATGTTACTATTGATTTCT+GGG | - | chr3_3:71705461-71705480 | None:intergenic | 25.0% |
| ! | TAGCAATAGTATAAAATGTC+GGG | + | chr3_3:71705478-71705497 | Msa0469720:exon | 25.0% |
| ! | AGCAACTTAAACATGAAATT+AGG | - | chr3_3:71705730-71705749 | None:intergenic | 25.0% |
| ! | AATCAAAGTAATTGTATCGT+CGG | - | chr3_3:71705943-71705962 | None:intergenic | 25.0% |
| ! | TAAAATATTGACGTCATACA+AGG | - | chr3_3:71705972-71705991 | None:intergenic | 25.0% |
| ! | TGTTCCGTAAAAAAAAAAGA+AGG | - | chr3_3:71706062-71706081 | None:intergenic | 25.0% |
| !!! | CATAATAAATTGGTTTGGTT+TGG | + | chr3_3:71706217-71706236 | Msa0469720:intron | 25.0% |
| ! | CACTATATATCGAAAACTAT+TGG | - | chr3_3:71706307-71706326 | None:intergenic | 25.0% |
| !!! | TGTTTTTTACAATGAGTAGT+TGG | + | chr3_3:71706463-71706482 | Msa0469720:intron | 25.0% |
| ! | TATACTATTCTCAACTACAT+TGG | + | chr3_3:71706733-71706752 | Msa0469720:intron | 25.0% |
| !!! | ATGTACTTTTTTTTGCAGAT+TGG | + | chr3_3:71706977-71706996 | Msa0469720:intron | 25.0% |
| ! | TAAGCCATTTGTATAACAAA+AGG | - | chr3_3:71707459-71707478 | None:intergenic | 25.0% |
| !! | ACAAAATTTTGTATACAGGT+TGG | + | chr3_3:71707831-71707850 | Msa0469720:intron | 25.0% |
| !!! | ATTACTTGATTTTCAGGTAA+TGG | + | chr3_3:71708015-71708034 | Msa0469720:intron | 25.0% |
| !!! | CAATTTAGAGGTATTGATTA+AGG | + | chr3_3:71708137-71708156 | Msa0469720:intron | 25.0% |
| ! | TTAATAAGTCAATCCAAACA+TGG | - | chr3_3:71708163-71708182 | None:intergenic | 25.0% |
| ! | TGACTGGAAAATAAAAAAGA+AGG | - | chr3_3:71708362-71708381 | None:intergenic | 25.0% |
| ! | TAAGTCAATAATGAGTTAAG+GGG | - | chr3_3:71708414-71708433 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTATAACGTAATC+AGG | - | chr3_3:71708520-71708539 | None:intergenic | 25.0% |
| ! | AAAATTTCATACCAATTTGG+GGG | - | chr3_3:71708551-71708570 | None:intergenic | 25.0% |
| ! | GAAAATTTCATACCAATTTG+GGG | - | chr3_3:71708552-71708571 | None:intergenic | 25.0% |
| ! | GGAAAATTTCATACCAATTT+GGG | - | chr3_3:71708553-71708572 | None:intergenic | 25.0% |
| ! | GATAAATCATTGGATTCTAT+TGG | - | chr3_3:71708686-71708705 | None:intergenic | 25.0% |
| !! | TTTTATATACTGCAATGCAA+TGG | + | chr3_3:71708843-71708862 | Msa0469720:intron | 25.0% |
| ! | TTTATTCTTACCGTGATAAT+GGG | - | chr3_3:71708971-71708990 | None:intergenic | 25.0% |
| !! | TTTTATTCTTACCGTGATAA+TGG | - | chr3_3:71708972-71708991 | None:intergenic | 25.0% |
| !! | GTATCCAATTTAAAACAATG+GGG | + | chr3_3:71709049-71709068 | Msa0469720:intron | 25.0% |
| ! | ATAATACTTTCTTTCTTGCT+TGG | + | chr3_3:71709080-71709099 | Msa0469720:intron | 25.0% |
| ! | ATAAGTAACATTGCATGATA+AGG | - | chr3_3:71709310-71709329 | None:intergenic | 25.0% |
| !!! | TGTGCTTTTTAAAAGCAAAT+TGG | + | chr3_3:71709718-71709737 | Msa0469720:three_prime_UTR | 25.0% |
| !! | GCTATGTTACTATTGATTTC+TGG | - | chr3_3:71705462-71705481 | None:intergenic | 30.0% |
| ! | ATTTGGAGTCACTATTATGA+TGG | + | chr3_3:71705909-71705928 | Msa0469720:intron | 30.0% |
| AATCACGTAAATACAAGTCA+CGG | + | chr3_3:71706120-71706139 | Msa0469720:intron | 30.0% | |
| ACTTCCTAGGCATAATAAAT+TGG | + | chr3_3:71706207-71706226 | Msa0469720:intron | 30.0% | |
| CAAACCAATTTATTATGCCT+AGG | - | chr3_3:71706214-71706233 | None:intergenic | 30.0% | |
| CTAGGCATAATAAATTGGTT+TGG | + | chr3_3:71706212-71706231 | Msa0469720:intron | 30.0% | |
| AATCCTAATAGCCATAACTT+TGG | + | chr3_3:71706506-71706525 | Msa0469720:intron | 30.0% | |
| TATTGTGTCAACCAAAGTTA+TGG | - | chr3_3:71706520-71706539 | None:intergenic | 30.0% | |
| GTAACTTGAAAATGCTATGT+AGG | - | chr3_3:71706593-71706612 | None:intergenic | 30.0% | |
| TTAGTAAAAAGGAAAGAGGT+TGG | - | chr3_3:71706681-71706700 | None:intergenic | 30.0% | |
| CCATTTAGTAAAAAGGAAAG+AGG | - | chr3_3:71706685-71706704 | None:intergenic | 30.0% | |
| ! | CCTCTTTCCTTTTTACTAAA+TGG | + | chr3_3:71706682-71706701 | Msa0469720:intron | 30.0% |
| ATTGAGTGAAATGAAACCAA+GGG | - | chr3_3:71706798-71706817 | None:intergenic | 30.0% | |
| AATACAACTAAGCAATTGAC+AGG | + | chr3_3:71706897-71706916 | Msa0469720:intron | 30.0% | |
| ! | GGTAAAATAAACCTTTTCTG+GGG | - | chr3_3:71707056-71707075 | None:intergenic | 30.0% |
| ! | GGGTAAAATAAACCTTTTCT+GGG | - | chr3_3:71707057-71707076 | None:intergenic | 30.0% |
| TAACTCAAATACAACCAACA+AGG | - | chr3_3:71707550-71707569 | None:intergenic | 30.0% | |
| TAACTCATCTATAAGAGTTG+TGG | + | chr3_3:71707763-71707782 | Msa0469720:CDS | 30.0% | |
| ! | TGGGACAAAATTTTGTATAC+AGG | + | chr3_3:71707827-71707846 | Msa0469720:CDS | 30.0% |
| !!! | ATTTTCAGGTAATGGAAAAG+TGG | + | chr3_3:71708023-71708042 | Msa0469720:intron | 30.0% |
| !!! | TTTTCAGGTAATGGAAAAGT+GGG | + | chr3_3:71708024-71708043 | Msa0469720:intron | 30.0% |
| GGATTCAAATGTCAATTTAG+AGG | + | chr3_3:71708125-71708144 | Msa0469720:CDS | 30.0% | |
| TCATATTGCTTTCATGTGTA+AGG | - | chr3_3:71708270-71708289 | None:intergenic | 30.0% | |
| TGATATAACTAGTTACTGAC+TGG | - | chr3_3:71708378-71708397 | None:intergenic | 30.0% | |
| GGGAAAATTTCATACCAATT+TGG | - | chr3_3:71708554-71708573 | None:intergenic | 30.0% | |
| ! | TTTAGAACTCTTAACAACGA+GGG | - | chr3_3:71708574-71708593 | None:intergenic | 30.0% |
| ! | ATTTAGAACTCTTAACAACG+AGG | - | chr3_3:71708575-71708594 | None:intergenic | 30.0% |
| GTCTTTGTGTATCTAATGTT+TGG | + | chr3_3:71708599-71708618 | Msa0469720:intron | 30.0% | |
| CCTACTAAACTTGAATTAAG+AGG | - | chr3_3:71708823-71708842 | None:intergenic | 30.0% | |
| ! | CCTCTTAATTCAAGTTTAGT+AGG | + | chr3_3:71708820-71708839 | Msa0469720:intron | 30.0% |
| GTAAATAAATATGCAGCAAG+TGG | - | chr3_3:71709159-71709178 | None:intergenic | 30.0% | |
| TACAAATGACAACAAGTTCA+AGG | + | chr3_3:71709176-71709195 | Msa0469720:CDS | 30.0% | |
| GATAAGGATATATGCATTCA+TGG | - | chr3_3:71709294-71709313 | None:intergenic | 30.0% | |
| TACAAAGCAGAAATTGATGA+AGG | + | chr3_3:71709508-71709527 | Msa0469720:CDS | 30.0% | |
| GTAAGACACGAAGTTATGAA+TGG | + | chr3_3:71705587-71705606 | Msa0469720:CDS | 35.0% | |
| AAGTAATTGTATCGTCGGAA+CGG | - | chr3_3:71705938-71705957 | None:intergenic | 35.0% | |
| AGGATGCTTCTTAAAAGACA+GGG | + | chr3_3:71706148-71706167 | Msa0469720:intron | 35.0% | |
| !! | GAAGGCGCTAATTTATTCAA+TGG | + | chr3_3:71706175-71706194 | Msa0469720:intron | 35.0% |
| ATGGAGGAATAAAACTTCCT+AGG | + | chr3_3:71706194-71706213 | Msa0469720:intron | 35.0% | |
| ! | TTGTGAGAACTAAAGTGTTC+TGG | + | chr3_3:71706359-71706378 | Msa0469720:intron | 35.0% |
| CAACCAAAGTTATGGCTATT+AGG | - | chr3_3:71706512-71706531 | None:intergenic | 35.0% | |
| GAAAATGCTATGTAGGCATT+TGG | - | chr3_3:71706586-71706605 | None:intergenic | 35.0% | |
| ! | TAATTTTAAGCACGGTCAAG+AGG | - | chr3_3:71706648-71706667 | None:intergenic | 35.0% |
| ACGGAGTCCATTTAGTAAAA+AGG | - | chr3_3:71706692-71706711 | None:intergenic | 35.0% | |
| CATTGAGTGAAATGAAACCA+AGG | - | chr3_3:71706799-71706818 | None:intergenic | 35.0% | |
| GAAGGAATTGAAACAATGGA+TGG | + | chr3_3:71707030-71707049 | Msa0469720:CDS | 35.0% | |
| ! | GGGGTAAAATAAACCTTTTC+TGG | - | chr3_3:71707058-71707077 | None:intergenic | 35.0% |
| CTGAAGGTCAACTTACAAAA+TGG | - | chr3_3:71707269-71707288 | None:intergenic | 35.0% | |
| CTAAACAGTCTCAAGAATGT+TGG | - | chr3_3:71707330-71707349 | None:intergenic | 35.0% | |
| TTAACAGAACAGAACCTTGT+TGG | + | chr3_3:71707533-71707552 | Msa0469720:intron | 35.0% | |
| !!! | TTCTGATGGTTTTAGAACCA+CGG | - | chr3_3:71707690-71707709 | None:intergenic | 35.0% |
| TCATCTATAAGAGTTGTGGA+GGG | + | chr3_3:71707767-71707786 | Msa0469720:CDS | 35.0% | |
| CAATGCAGTAGTTTCATCAA+CGG | - | chr3_3:71707795-71707814 | None:intergenic | 35.0% | |
| TGCATTGTTGCAACAAAAGT+GGG | + | chr3_3:71707808-71707827 | Msa0469720:CDS | 35.0% | |
| !! | TATCACCAGTCTGTTTTTCT+TGG | + | chr3_3:71707861-71707880 | Msa0469720:intron | 35.0% |
| !!! | TTTTGGTTTTGTCGTGCAAT+TGG | + | chr3_3:71707901-71707920 | Msa0469720:intron | 35.0% |
| TGCAATTGGTATGCCATTAT+TGG | + | chr3_3:71707915-71707934 | Msa0469720:intron | 35.0% | |
| ACATTTGAATCCACAACAGT+TGG | - | chr3_3:71708117-71708136 | None:intergenic | 35.0% | |
| !! | GTATTGATTAAGGCCATGTT+TGG | + | chr3_3:71708147-71708166 | Msa0469720:intron | 35.0% |
| ! | ATTGTTTTCAATGGCTATCC+AGG | - | chr3_3:71708215-71708234 | None:intergenic | 35.0% |
| TCAATAATGAGTTAAGGGGA+AGG | - | chr3_3:71708410-71708429 | None:intergenic | 35.0% | |
| TTTACTAGGTTACAGCTAGA+CGG | + | chr3_3:71708446-71708465 | Msa0469720:intron | 35.0% | |
| TGATGCCTTAAAGACAGAAT+TGG | + | chr3_3:71708640-71708659 | Msa0469720:CDS | 35.0% | |
| GCTTTCCAATTCTGTCTTTA+AGG | - | chr3_3:71708648-71708667 | None:intergenic | 35.0% | |
| ACAGAATTGGAAAGCTTCTT+TGG | + | chr3_3:71708653-71708672 | Msa0469720:CDS | 35.0% | |
| TCTTGACACAAGCAAATTAC+AGG | + | chr3_3:71708867-71708886 | Msa0469720:intron | 35.0% | |
| CTCATTATCAGAGAATCTTG+TGG | - | chr3_3:71708923-71708942 | None:intergenic | 35.0% | |
| ! | AGATTCTCTGATAATGAGTG+AGG | + | chr3_3:71708925-71708944 | Msa0469720:CDS | 35.0% |
| ATAATGAGTGAGGAGATCTT+TGG | + | chr3_3:71708935-71708954 | Msa0469720:CDS | 35.0% | |
| !!! | GATGCCCCATTGTTTTAAAT+TGG | - | chr3_3:71709056-71709075 | None:intergenic | 35.0% |
| ! | TTTGTGAAGAATGTTTCTGC+TGG | + | chr3_3:71709204-71709223 | Msa0469720:CDS | 35.0% |
| ! | TTGTGAAGAATGTTTCTGCT+GGG | + | chr3_3:71709205-71709224 | Msa0469720:CDS | 35.0% |
| GGATATATGCATTCATGGAA+AGG | - | chr3_3:71709289-71709308 | None:intergenic | 35.0% | |
| ! | TGGTTCATACTTTGCCATTT+GGG | + | chr3_3:71709357-71709376 | Msa0469720:CDS | 35.0% |
| !! | TTTGTGAGTAAAAGCGTCAA+AGG | - | chr3_3:71709426-71709445 | None:intergenic | 35.0% |
| ! | TGACGCTTTTACTCACAAAA+AGG | + | chr3_3:71709427-71709446 | Msa0469720:CDS | 35.0% |
| !! | AGTTCTTTACCGTGGTTTTA+CGG | + | chr3_3:71709451-71709470 | Msa0469720:CDS | 35.0% |
| TTCTGCTTTGTATCAGTGTA+AGG | - | chr3_3:71709500-71709519 | None:intergenic | 35.0% | |
| GAGAGCAGAGTGGAAATATT+TGG | - | chr3_3:71705417-71705436 | None:intergenic | 40.0% | |
| TGAAGATCAGTCACAGAAGA+AGG | + | chr3_3:71705501-71705520 | Msa0469720:CDS | 40.0% | |
| !! | TTATGAATGGAGAGTATCGC+AGG | + | chr3_3:71705600-71705619 | Msa0469720:CDS | 40.0% |
| !! | GGTGAAAGCTCTTTTGAAGA+TGG | + | chr3_3:71705621-71705640 | Msa0469720:CDS | 40.0% |
| !! | GAAGATGGTTGATGAACAAC+AGG | + | chr3_3:71705636-71705655 | Msa0469720:CDS | 40.0% |
| TCGTAGACAACAGTTTCAAG+CGG | - | chr3_3:71705703-71705722 | None:intergenic | 40.0% | |
| AAATACAAGTCACGGAAACC+AGG | + | chr3_3:71706128-71706147 | Msa0469720:intron | 40.0% | |
| !!! | CTGTCTTTTAAGAAGCATCC+TGG | - | chr3_3:71706149-71706168 | None:intergenic | 40.0% |
| CAGGATGCTTCTTAAAAGAC+AGG | + | chr3_3:71706147-71706166 | Msa0469720:intron | 40.0% | |
| CTTAAAAGACAGGGACAAGA+AGG | + | chr3_3:71706157-71706176 | Msa0469720:intron | 40.0% | |
| GGCGCTAATTTATTCAATGG+AGG | + | chr3_3:71706178-71706197 | Msa0469720:intron | 40.0% | |
| ! | TAGGCGGCTAATTTTAAGCA+CGG | - | chr3_3:71706656-71706675 | None:intergenic | 40.0% |
| AAAAGGAAAGAGGTTGGACT+AGG | - | chr3_3:71706675-71706694 | None:intergenic | 40.0% | |
| ! | CGAGTTTTTCTCAACTGCTA+CGG | - | chr3_3:71706711-71706730 | None:intergenic | 40.0% |
| CGTAGCAGTTGAGAAAAACT+CGG | + | chr3_3:71706709-71706728 | Msa0469720:intron | 40.0% | |
| GTACATCAGTGAAGAGTAGA+AGG | - | chr3_3:71706963-71706982 | None:intergenic | 40.0% | |
| CGCTGAAGGAATTGAAACAA+TGG | + | chr3_3:71707026-71707045 | Msa0469720:CDS | 40.0% | |
| CTTCTCAGCTGAAGAAATTG+GGG | - | chr3_3:71707077-71707096 | None:intergenic | 40.0% | |
| CCTTCTCAGCTGAAGAAATT+GGG | - | chr3_3:71707078-71707097 | None:intergenic | 40.0% | |
| TCCTTCTCAGCTGAAGAAAT+TGG | - | chr3_3:71707079-71707098 | None:intergenic | 40.0% | |
| GGTACTATTTCAGCTGAAGA+AGG | - | chr3_3:71707203-71707222 | None:intergenic | 40.0% | |
| GAAATAGTACCTGAACCACT+TGG | + | chr3_3:71707212-71707231 | Msa0469720:CDS | 40.0% | |
| ATGACTAACACTACACCAAG+TGG | - | chr3_3:71707230-71707249 | None:intergenic | 40.0% | |
| TAGTGTTAGTCATCTCTGCT+TGG | + | chr3_3:71707237-71707256 | Msa0469720:CDS | 40.0% | |
| AAGTTGACCTTCAGCATGAT+TGG | + | chr3_3:71707275-71707294 | Msa0469720:intron | 40.0% | |
| AGTCAAACCAATCATGCTGA+AGG | - | chr3_3:71707285-71707304 | None:intergenic | 40.0% | |
| ! | GAACTTATTAGGGAGGTACA+TGG | + | chr3_3:71707739-71707758 | Msa0469720:CDS | 40.0% |
| CTCATCTATAAGAGTTGTGG+AGG | + | chr3_3:71707766-71707785 | Msa0469720:CDS | 40.0% | |
| CATCTATAAGAGTTGTGGAG+GGG | + | chr3_3:71707768-71707787 | Msa0469720:CDS | 40.0% | |
| ATCTATAAGAGTTGTGGAGG+GGG | + | chr3_3:71707769-71707788 | Msa0469720:CDS | 40.0% | |
| CTGCATTGTTGCAACAAAAG+TGG | + | chr3_3:71707807-71707826 | Msa0469720:CDS | 40.0% | |
| !! | ACCAGTCTGTTTTTCTTGGA+TGG | + | chr3_3:71707865-71707884 | Msa0469720:intron | 40.0% |
| ACCATCCAAGAAAAACAGAC+TGG | - | chr3_3:71707869-71707888 | None:intergenic | 40.0% | |
| AGGAAAATCTCCAACTGTTG+TGG | + | chr3_3:71708104-71708123 | Msa0469720:CDS | 40.0% | |
| ! | GTTATTTCCTTCAGTTCTCC+TGG | + | chr3_3:71708194-71708213 | Msa0469720:intron | 40.0% |
| GCTAAGACTTAGAACCTGAT+TGG | - | chr3_3:71708340-71708359 | None:intergenic | 40.0% | |
| ACAGCTAGACGGATAATTTC+AGG | + | chr3_3:71708457-71708476 | Msa0469720:CDS | 40.0% | |
| GACGGATAATTTCAGGAAAG+TGG | + | chr3_3:71708464-71708483 | Msa0469720:CDS | 40.0% | |
| AACGTAATCAGGAGAAATGC+AGG | - | chr3_3:71708509-71708528 | None:intergenic | 40.0% | |
| AAAAGACTTTGCCCCCAAAT+TGG | + | chr3_3:71708537-71708556 | Msa0469720:CDS | 40.0% | |
| CACAATGCGCGATAAATCAT+TGG | - | chr3_3:71708696-71708715 | None:intergenic | 40.0% | |
| !! | GTTTCTGGCAAGGTTGTTTA+TGG | + | chr3_3:71708764-71708783 | Msa0469720:CDS | 40.0% |
| GGTTGTTTATGGAGGTGAAA+AGG | + | chr3_3:71708775-71708794 | Msa0469720:CDS | 40.0% | |
| TGACACAAGCAAATTACAGG+AGG | + | chr3_3:71708870-71708889 | Msa0469720:intron | 40.0% | |
| ! | GGAGCGTCTAATACAATAGT+GGG | - | chr3_3:71708902-71708921 | None:intergenic | 40.0% |
| ! | TGGAGCGTCTAATACAATAG+TGG | - | chr3_3:71708903-71708922 | None:intergenic | 40.0% |
| TCCATTGCTTCCCATTATCA+CGG | + | chr3_3:71708958-71708977 | Msa0469720:CDS | 40.0% | |
| CTTTCTTTCTTGCTTGGAAC+AGG | + | chr3_3:71709086-71709105 | Msa0469720:intron | 40.0% | |
| ! | TGTGAAGAATGTTTCTGCTG+GGG | + | chr3_3:71709206-71709225 | Msa0469720:CDS | 40.0% |
| GTGGTTCATACTTTGCCATT+TGG | + | chr3_3:71709356-71709375 | Msa0469720:CDS | 40.0% | |
| ! | GGTTCATACTTTGCCATTTG+GGG | + | chr3_3:71709358-71709377 | Msa0469720:CDS | 40.0% |
| ! | GTTCATACTTTGCCATTTGG+GGG | + | chr3_3:71709359-71709378 | Msa0469720:CDS | 40.0% |
| AAAAAGGCAGTTCTTTACCG+TGG | + | chr3_3:71709443-71709462 | Msa0469720:CDS | 40.0% | |
| !! | GTTCTTTACCGTGGTTTTAC+GGG | + | chr3_3:71709452-71709471 | Msa0469720:CDS | 40.0% |
| TGCTTTGTATCAGTGTAAGG+CGG | - | chr3_3:71709497-71709516 | None:intergenic | 40.0% | |
| ! | TTGTTCGTGCTCTTTTTGGA+TGG | + | chr3_3:71709558-71709577 | Msa0469720:CDS | 40.0% |
| GAGATAAACTGAGAGCAGAG+TGG | - | chr3_3:71705427-71705446 | None:intergenic | 45.0% | |
| AGATCAGTCACAGAAGAAGG+TGG | + | chr3_3:71705504-71705523 | Msa0469720:CDS | 45.0% | |
| CAGAAGAAGGTGGTGTTTGA+CGG | + | chr3_3:71705514-71705533 | Msa0469720:CDS | 45.0% | |
| CAGAATTAAAGCTCACCCTC+AGG | - | chr3_3:71705567-71705586 | None:intergenic | 45.0% | |
| ! | CTGAGGGTGAGCTTTAATTC+TGG | + | chr3_3:71705565-71705584 | Msa0469720:CDS | 45.0% |
| TTTCAAGCGGTGGTTTAGCA+AGG | - | chr3_3:71705690-71705709 | None:intergenic | 45.0% | |
| TAGACAACAGTTTCAAGCGG+TGG | - | chr3_3:71705700-71705719 | None:intergenic | 45.0% | |
| GCTTGAAACTGTTGTCTACG+AGG | + | chr3_3:71705702-71705721 | Msa0469720:CDS | 45.0% | |
| TGCGTATTAGTGTGAGACTG+TGG | + | chr3_3:71706556-71706575 | Msa0469720:intron | 45.0% | |
| AGTTACTCGCGAAATTCGCA+TGG | + | chr3_3:71706607-71706626 | Msa0469720:intron | 45.0% | |
| CCCAATTTCTTCAGCTGAGA+AGG | + | chr3_3:71707075-71707094 | Msa0469720:intron | 45.0% | |
| AACACTACACCAAGTGGTTC+AGG | - | chr3_3:71707224-71707243 | None:intergenic | 45.0% | |
| AGCTCCAACAACTGGATCAA+GGG | - | chr3_3:71707651-71707670 | None:intergenic | 45.0% | |
| TAGCTCCAACAACTGGATCA+AGG | - | chr3_3:71707652-71707671 | None:intergenic | 45.0% | |
| !!! | TTTTAGAACCACGGCGTTTC+CGG | - | chr3_3:71707681-71707700 | None:intergenic | 45.0% |
| TCACTGCTGGCGAACTTATT+AGG | + | chr3_3:71707728-71707747 | Msa0469720:CDS | 45.0% | |
| CACTGCTGGCGAACTTATTA+GGG | + | chr3_3:71707729-71707748 | Msa0469720:CDS | 45.0% | |
| !! | CAGGTAATGGAAAAGTGGGA+CGG | + | chr3_3:71708028-71708047 | Msa0469720:intron | 45.0% |
| AAAAGTGGGACGGATAGTGA+TGG | + | chr3_3:71708038-71708057 | Msa0469720:CDS | 45.0% | |
| !! | GGAAAGTGGTGCTGTAACAA+TGG | + | chr3_3:71708478-71708497 | Msa0469720:CDS | 45.0% |
| !! | CTGTCTTTAAGGCATCAACC+TGG | - | chr3_3:71708637-71708656 | None:intergenic | 45.0% |
| TTCTAACCACTTTGCTCGCT+TGG | + | chr3_3:71708718-71708737 | Msa0469720:CDS | 45.0% | |
| TCTTTACCAAGCGAGCAAAG+TGG | - | chr3_3:71708727-71708746 | None:intergenic | 45.0% | |
| TGCTCGCTTGGTAAAGATGT+TGG | + | chr3_3:71708730-71708749 | Msa0469720:CDS | 45.0% | |
| AAAGATGTTGGACGACGAGA+AGG | + | chr3_3:71708742-71708761 | Msa0469720:CDS | 45.0% | |
| TCTGGCAAGGTTGTTTATGG+AGG | + | chr3_3:71708767-71708786 | Msa0469720:CDS | 45.0% | |
| !! | ACCGTGATAATGGGAAGCAA+TGG | - | chr3_3:71708962-71708981 | None:intergenic | 45.0% |
| ! | AGCTTCGATTTGATCAACGC+AGG | + | chr3_3:71709126-71709145 | Msa0469720:CDS | 45.0% |
| ! | GTGAAGAATGTTTCTGCTGG+GGG | + | chr3_3:71709207-71709226 | Msa0469720:CDS | 45.0% |
| TATGAACCACAAGCTGCACA+AGG | - | chr3_3:71709346-71709365 | None:intergenic | 45.0% | |
| CGTCAAAGGAGAATTTCCCA+TGG | - | chr3_3:71709412-71709431 | None:intergenic | 45.0% | |
| ATGCATCACCCGTAAAACCA+CGG | - | chr3_3:71709463-71709482 | None:intergenic | 45.0% | |
| ! | TTACGGGTGATGCATCGATA+AGG | + | chr3_3:71709468-71709487 | Msa0469720:CDS | 45.0% |
| GCTTTGTATCAGTGTAAGGC+GGG | - | chr3_3:71709496-71709515 | None:intergenic | 45.0% | |
| AACAACACCAGTAACATCGC+CGG | - | chr3_3:71709543-71709562 | None:intergenic | 45.0% | |
| !!! | GGTGTTGTTCGTGCTCTTTT+TGG | + | chr3_3:71709554-71709573 | Msa0469720:CDS | 45.0% |
| ACAAATGGTACAGCACTAGC+AGG | - | chr3_3:71709620-71709639 | None:intergenic | 45.0% | |
| !!! | AATTATAATTCATTTTTTTT+TGG | + | chr3_3:71705786-71705805 | Msa0469720:intron | 5.0% |
| ! | AGGAAAGAGGTTGGACTAGG+CGG | - | chr3_3:71706672-71706691 | None:intergenic | 50.0% |
| CTCATGTGAAGTCACGCTGA+AGG | + | chr3_3:71707012-71707031 | Msa0469720:CDS | 50.0% | |
| ACAATGGATGGCCCCAGAAA+AGG | + | chr3_3:71707042-71707061 | Msa0469720:CDS | 50.0% | |
| CTGTCCCTTGATCCAGTTGT+TGG | + | chr3_3:71707644-71707663 | Msa0469720:CDS | 50.0% | |
| GCTGCTATAGCTCCAACAAC+TGG | - | chr3_3:71707659-71707678 | None:intergenic | 50.0% | |
| GTTGTTGGAGCTATAGCAGC+CGG | + | chr3_3:71707659-71707678 | Msa0469720:CDS | 50.0% | |
| GAGGCTGGAGCAATTTCTGA+TGG | - | chr3_3:71707704-71707723 | None:intergenic | 50.0% | |
| TGCTGGCGAACTTATTAGGG+AGG | + | chr3_3:71707732-71707751 | Msa0469720:CDS | 50.0% | |
| ACACCTTACACCAGTCGTTC+TGG | + | chr3_3:71708074-71708093 | Msa0469720:CDS | 50.0% | |
| TGGCTATCCAGGAGAACTGA+AGG | - | chr3_3:71708204-71708223 | None:intergenic | 50.0% | |
| !! | GTTTGGTGCCTCTCATTTCC+AGG | + | chr3_3:71708616-71708635 | Msa0469720:intron | 50.0% |
| GGCATCAACCTGGAAATGAG+AGG | - | chr3_3:71708627-71708646 | None:intergenic | 50.0% | |
| TTGGACGACGAGAAGGTTTC+TGG | + | chr3_3:71708749-71708768 | Msa0469720:CDS | 50.0% | |
| CTTGGAACAGGTGAACAAGC+TGG | + | chr3_3:71709098-71709117 | Msa0469720:intron | 50.0% | |
| CCACAAGCTGCACAAGGAAA+AGG | - | chr3_3:71709340-71709359 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTTGTGCAGCTTG+TGG | + | chr3_3:71709337-71709356 | Msa0469720:intron | 50.0% |
| ! | ACTTTGCCATTTGGGGGAGT+TGG | + | chr3_3:71709365-71709384 | Msa0469720:CDS | 50.0% |
| !! | GGAGTTGGTGACAGTGGAAT+GGG | + | chr3_3:71709380-71709399 | Msa0469720:CDS | 50.0% |
| AGTGGAATGGGTGCATACCA+TGG | + | chr3_3:71709392-71709411 | Msa0469720:CDS | 50.0% | |
| GTGGAATGGGTGCATACCAT+GGG | + | chr3_3:71709393-71709412 | Msa0469720:CDS | 50.0% | |
| ! | TTGATGAAGGCTCTAGTCGC+CGG | + | chr3_3:71709521-71709540 | Msa0469720:CDS | 50.0% |
| GGTACAGCACTAGCAGGTAT+CGG | - | chr3_3:71709614-71709633 | None:intergenic | 50.0% | |
| GGTGGTGTTTGACGGAGAAG+CGG | + | chr3_3:71705522-71705541 | Msa0469720:CDS | 55.0% | |
| ! | GTCGTTGGTGAAGGACCTGA+GGG | + | chr3_3:71705549-71705568 | Msa0469720:CDS | 55.0% |
| AGTGGGACGGATAGTGATGG+CGG | + | chr3_3:71708041-71708060 | Msa0469720:CDS | 55.0% | |
| GCTCCAGAACGACTGGTGTA+AGG | - | chr3_3:71708080-71708099 | None:intergenic | 55.0% | |
| !! | ACACCAGTCGTTCTGGAGCT+TGG | + | chr3_3:71708081-71708100 | Msa0469720:CDS | 55.0% |
| !! | CGACGAGAAGGTTTCTGGCA+AGG | + | chr3_3:71708754-71708773 | Msa0469720:CDS | 55.0% |
| CTGTCACCAACTCCCCCAAA+TGG | - | chr3_3:71709374-71709393 | None:intergenic | 55.0% | |
| !! | TTTGGGGGAGTTGGTGACAG+TGG | + | chr3_3:71709374-71709393 | Msa0469720:CDS | 55.0% |
| !! | GGGAGTTGGTGACAGTGGAA+TGG | + | chr3_3:71709379-71709398 | Msa0469720:CDS | 55.0% |
| ! | CGTCGTTGGTGAAGGACCTG+AGG | + | chr3_3:71705548-71705567 | Msa0469720:CDS | 60.0% |
| TATAGCAGCCGGAAACGCCG+TGG | + | chr3_3:71707670-71707689 | Msa0469720:CDS | 60.0% | |
| TCCAGCCTCGTCTTCACTGC+TGG | + | chr3_3:71707715-71707734 | Msa0469720:CDS | 60.0% | |
| GTTCGCCAGCAGTGAAGACG+AGG | - | chr3_3:71707723-71707742 | None:intergenic | 60.0% | |
| CCTCCAAGCTCCAGAACGAC+TGG | - | chr3_3:71708087-71708106 | None:intergenic | 60.0% | |
| !! | CCAGTCGTTCTGGAGCTTGG+AGG | + | chr3_3:71708084-71708103 | Msa0469720:CDS | 60.0% |
| CTAGTCGCCGGCGATGTTAC+TGG | + | chr3_3:71709533-71709552 | Msa0469720:CDS | 60.0% | |
| ! | AGCGGCGTCGTCGTTGGTGA+AGG | + | chr3_3:71705540-71705559 | Msa0469720:CDS | 65.0% |
| GCCAGCAGTGAAGACGAGGC+TGG | - | chr3_3:71707719-71707738 | None:intergenic | 65.0% | |
| CGGAGAAGCGGCGTCGTCGT+TGG | + | chr3_3:71705534-71705553 | Msa0469720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71705366 | 71709770 | 71705366 | ID=Msa0469720;Name=Msa0469720 |
| chr3_3 | mRNA | 71705366 | 71709770 | 71705366 | ID=Msa0469720-mRNA-1;Parent=Msa0469720;Name=Msa0469720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=127|1|1|1|1|1|10|184|490 |
| chr3_3 | exon | 71705366 | 71705723 | 71705366 | ID=Msa0469720-mRNA-1:exon:17666;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71706995 | 71707063 | 71706995 | ID=Msa0469720-mRNA-1:exon:17667;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71707176 | 71707272 | 71707176 | ID=Msa0469720-mRNA-1:exon:17668;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71707642 | 71707848 | 71707642 | ID=Msa0469720-mRNA-1:exon:17669;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71708031 | 71708146 | 71708031 | ID=Msa0469720-mRNA-1:exon:17670;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71708454 | 71708558 | 71708454 | ID=Msa0469720-mRNA-1:exon:17671;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71708638 | 71708810 | 71708638 | ID=Msa0469720-mRNA-1:exon:17672;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71708889 | 71708979 | 71708889 | ID=Msa0469720-mRNA-1:exon:17673;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71709108 | 71709257 | 71709108 | ID=Msa0469720-mRNA-1:exon:17674;Parent=Msa0469720-mRNA-1 |
| chr3_3 | exon | 71709353 | 71709770 | 71709353 | ID=Msa0469720-mRNA-1:exon:17675;Parent=Msa0469720-mRNA-1 |
| chr3_3 | five_prime_UTR | 71705366 | 71705492 | 71705366 | ID=Msa0469720-mRNA-1:five_prime_utr;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71705493 | 71705723 | 71705493 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71706995 | 71707063 | 71706995 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71707176 | 71707272 | 71707176 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71707642 | 71707848 | 71707642 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71708031 | 71708146 | 71708031 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71708454 | 71708558 | 71708454 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71708638 | 71708810 | 71708638 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71708889 | 71708979 | 71708889 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71709108 | 71709257 | 71709108 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | CDS | 71709353 | 71709586 | 71709353 | ID=Msa0469720-mRNA-1:cds;Parent=Msa0469720-mRNA-1 |
| chr3_3 | three_prime_UTR | 71709587 | 71709770 | 71709587 | ID=Msa0469720-mRNA-1:three_prime_utr;Parent=Msa0469720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
