AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076640 MtrunA17_Chr1g0185651 83.738 412 20 2 189 553 40 451 0.0 681
Msa0076640 MtrunA17_Chr1g0185651 59.722 216 31 4 1 161 188 402 4.48e-68 226
Msa0076640 MtrunA17_Chr1g0185661 72.748 444 63 7 160 553 651 1086 0.0 618
Msa0076640 MtrunA17_Chr1g0185661 69.816 434 72 7 161 544 1 425 0.0 572
Msa0076640 MtrunA17_Chr1g0185661 73.430 207 8 2 1 160 830 1036 3.23e-84 283
Msa0076640 MtrunA17_Chr1g0185661 68.599 207 17 4 1 160 179 384 1.02e-74 256
Msa0076640 MtrunA17_Chr2g0287821 45.622 434 173 9 171 552 35 457 4.96e-119 359
Msa0076640 MtrunA17_Chr2g0287821 45.116 215 65 5 1 164 200 412 3.53e-45 165
Msa0076640 MtrunA17_Chr1g0187841 45.169 445 157 10 173 552 13 435 1.84e-112 341
Msa0076640 MtrunA17_Chr1g0187841 47.343 207 59 5 1 160 169 372 1.05e-48 174
Msa0076640 MtrunA17_Chr2g0287781 31.824 729 299 16 1 544 165 880 7.08e-81 276
Msa0076640 MtrunA17_Chr2g0287781 34.732 429 219 8 165 544 926 1342 7.81e-59 212
Msa0076640 MtrunA17_Chr2g0287781 35.109 413 199 10 165 526 3 397 9.23e-54 197
Msa0076640 MtrunA17_Chr2g0287781 39.320 206 78 7 1 160 1097 1301 7.14e-22 100
Msa0076640 MtrunA17_Chr4g0065581 37.002 427 194 10 188 547 33 451 2.38e-76 248
Msa0076640 MtrunA17_Chr4g0065581 40.376 213 71 5 3 160 192 403 1.52e-34 135
Msa0076640 MtrunA17_Chr7g0273041 35.526 456 208 14 161 551 1 435 1.67e-71 235
Msa0076640 MtrunA17_Chr7g0273041 30.769 208 93 9 1 161 184 387 1.68e-16 82.0
Msa0076640 MtrunA17_Chr2g0287811 35.129 427 209 9 170 546 13 421 2.11e-66 221
Msa0076640 MtrunA17_Chr2g0287811 37.864 206 81 6 1 160 175 379 6.26e-25 107
Msa0076640 MtrunA17_Chr2g0287831 35.802 405 197 13 191 551 26 411 1.17e-63 214
Msa0076640 MtrunA17_Chr2g0287831 36.000 200 92 4 1 166 172 369 1.55e-27 115
Msa0076640 MtrunA17_Chr2g0287861 35.859 396 178 10 188 525 27 404 1.79e-59 203
Msa0076640 MtrunA17_Chr2g0287861 36.058 208 81 5 1 160 174 377 1.37e-25 109
Msa0076640 MtrunA17_Chr2g0287841 33.718 433 199 12 154 525 23 428 7.16e-59 202
Msa0076640 MtrunA17_Chr2g0287841 35.922 206 80 6 3 160 200 401 2.74e-24 105
Msa0076640 MtrunA17_Chr5g0442921 23.380 432 246 17 167 534 139 549 2.19e-12 69.7
Msa0076640 MtrunA17_Chr2g0308001 24.714 437 233 19 168 544 8 408 1.56e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076640 AT1G03220.1 53.103 435 145 7 169 553 8 433 2.86e-141 416
Msa0076640 AT1G03220.1 48.325 209 60 4 1 161 176 384 9.76e-51 180
Msa0076640 AT1G03230.1 51.306 421 146 7 183 553 23 434 1.03e-130 389
Msa0076640 AT1G03230.1 45.455 209 66 4 1 161 177 385 1.90e-47 171
Msa0076640 AT5G19120.1 34.509 397 196 13 169 533 11 375 5.49e-45 163
Msa0076640 AT5G19120.1 31.383 188 94 6 3 165 173 350 1.52e-14 75.9
Msa0076640 AT5G19110.1 30.311 386 221 11 193 544 27 398 2.95e-40 151
Msa0076640 AT5G19110.1 29.630 189 85 7 14 160 175 357 2.03e-12 69.7
Msa0076640 AT5G19110.2 30.311 386 221 11 193 544 63 434 3.59e-40 151
Msa0076640 AT5G19110.2 29.630 189 85 7 14 160 211 393 2.54e-12 69.3
Msa0076640 AT5G19100.1 29.280 403 190 15 190 544 28 383 1.61e-31 126
Msa0076640 AT5G19100.1 31.937 191 90 9 3 161 161 343 1.12e-14 76.6
Msa0076640 AT5G48430.1 27.088 443 220 16 167 548 3 403 2.08e-30 123
Msa0076640 AT5G48430.1 32.338 201 92 7 1 162 165 360 5.92e-19 89.7

Find 123 sgRNAs with CRISPR-Local

Find 720 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTGCAGGTGGTGTTTC+TGG 0.186198 1_2:-52821427 Msa0076640:intron
TTGAGATGGAAGAGCAATTT+TGG 0.214100 1_2:+52826289 None:intergenic
CACAGCTTCAGCTTTCTTAC+AGG 0.218031 1_2:-52821185 Msa0076640:CDS
ATCTTGGCGGCAAATTTCTC+TGG 0.254611 1_2:-52821741 Msa0076640:CDS
GTGGGACTAGTGGGGTTCTT+TGG 0.271955 1_2:+52821779 None:intergenic
TTATTCGGGGATGGACCTTA+TGG 0.328054 1_2:-52826200 Msa0076640:intron
TTTGAATCAAATACAACGTT+AGG 0.335283 1_2:+52821247 None:intergenic
GCTTCTGGCATGGCTGGTCT+TGG 0.335616 1_2:-52826317 None:intergenic
AATGTGGTTTGGAGGATATT+TGG 0.337063 1_2:-52825771 Msa0076640:CDS
TGGGCGGAGGGGCACCGTGC+AGG 0.342916 1_2:+52821679 None:intergenic
TAATGTTCTGCAATTTGATT+TGG 0.346515 1_2:-52816771 Msa0076640:CDS
GTGTTGTTGCAGCCGGGTTT+TGG 0.364296 1_2:+52821610 None:intergenic
TGATTTGGCTGCGTCTAGAT+TGG 0.371344 1_2:-52816756 Msa0076640:CDS
TGCAAAATGAAAATGTGGTT+TGG 0.372624 1_2:-52825782 Msa0076640:CDS
AGTGGTGCTTCTGGCATGGC+TGG 0.372982 1_2:-52826323 None:intergenic
TTGTGTCTTGGATTTGTGAA+TGG 0.380483 1_2:-52825714 Msa0076640:CDS
TCATTATTACGAGGACTTGC+AGG 0.385904 1_2:-52821439 Msa0076640:CDS
GCCACAAGTGTTGTTGCAGC+CGG 0.388200 1_2:+52821603 None:intergenic
CTAAACCTTGTCGTCGATCT+TGG 0.395447 1_2:-52821757 Msa0076640:CDS
GGCGAGGGAACATTGGGCGG+AGG 0.396694 1_2:+52821666 None:intergenic
GCAAGGACTTCTATTGTGAT+TGG 0.397805 1_2:-52816812 Msa0076640:CDS
CGCAACAACACTACAATACT+TGG 0.400949 1_2:-52821812 Msa0076640:CDS
AAAGCTGAAGCTGTGCTAAC+AGG 0.402137 1_2:+52821193 None:intergenic
TGTAAAACAAGCTCAATTGT+AGG 0.405286 1_2:+52816929 None:intergenic
CGAGGGAACATTGGGCGGAG+GGG 0.409566 1_2:+52821668 None:intergenic
GACAGGGAGAACAAGTGCTT+TGG 0.411543 1_2:+52821846 None:intergenic
GGTTGAAACCGTTAGTTGAT+TGG 0.415138 1_2:+52821512 None:intergenic
ATCACCGCAGCTATCAGATT+TGG 0.415998 1_2:+52821645 None:intergenic
AATGTGATTTGGAGCATGTT+TGG 0.420754 1_2:-52816902 Msa0076640:CDS
CAACACTTGTGGCCTCATTC+CGG 0.423581 1_2:-52821593 Msa0076640:CDS
TCAGATGGTGTCATCATCTT+CGG 0.425111 1_2:-52821310 Msa0076640:intron
AAACATAAAGAGGGTGGATT+CGG 0.425811 1_2:-52825883 Msa0076640:CDS
GATTTGGCTGCGTCTAGATT+GGG 0.428577 1_2:-52816755 Msa0076640:CDS
TTGTGCCTTGGATTTGTTAA+CGG 0.429586 1_2:-52816845 Msa0076640:CDS
TCTTCCATCTCAACTAGCTT+CGG 0.431750 1_2:-52826279 Msa0076640:CDS
GGGCGGAGGGGCACCGTGCA+GGG 0.432186 1_2:+52821680 None:intergenic
TATTTGTCTTTCCTCTTCAA+AGG 0.433460 1_2:-52826231 Msa0076640:CDS
GCCAGGGACGCCATTGGGTG+CGG 0.437893 1_2:-52816957 Msa0076640:CDS
CAGATTTGGCGAGGGAACAT+TGG 0.444677 1_2:+52821659 None:intergenic
GCCGCACCCAATGGCGTCCC+TGG 0.447294 1_2:+52816956 None:intergenic
GATATTTGGTGCAAATTCAA+TGG 0.448768 1_2:-52825757 Msa0076640:CDS
TGTGATTGGAGGGTATCAAT+TGG 0.454119 1_2:-52816798 Msa0076640:CDS
GAAGCTTCTAAAACCGTGTA+AGG 0.460673 1_2:+52817088 None:intergenic
AGATTTGGCGAGGGAACATT+GGG 0.461212 1_2:+52821660 None:intergenic
CCACAAGTGTTGTTGCAGCC+GGG 0.468413 1_2:+52821604 None:intergenic
ACAGGGAGAACAAGTGCTTT+GGG 0.470267 1_2:+52821847 None:intergenic
GCGAGGGAACATTGGGCGGA+GGG 0.470700 1_2:+52821667 None:intergenic
CAATTTGCCAGGGACGCCAT+TGG 0.477486 1_2:-52816963 Msa0076640:CDS
ATTTGTCTTTCCTCTTCAAA+GGG 0.478971 1_2:-52826230 Msa0076640:CDS
AATTTGCCAGGGACGCCATT+GGG 0.481307 1_2:-52816962 Msa0076640:CDS
AAACTATAACAAAATTCAAA+AGG 0.494523 1_2:+52816989 None:intergenic
CATGTTTGGTGCAAATTCAA+TGG 0.495064 1_2:-52816888 Msa0076640:CDS
TTGAATCAAATACAACGTTA+GGG 0.495630 1_2:+52821248 None:intergenic
AACCTTGTCGTCGATCTTGG+CGG 0.500614 1_2:-52821754 Msa0076640:CDS
ATAGACAACAACGGCGTTGG+TGG 0.502656 1_2:-52825999 Msa0076640:CDS
AGATCGACGACAAGGTTTAG+TGG 0.508860 1_2:+52821760 None:intergenic
AGGACTTCTATTGTGATTGG+AGG 0.508976 1_2:-52816809 Msa0076640:CDS
TCTATAGACAACAACGGCGT+TGG 0.509782 1_2:-52826002 Msa0076640:CDS
TCTTGGCGGCAAATTTCTCT+GGG 0.510646 1_2:-52821740 Msa0076640:CDS
CGGAGGGGCACCGTGCAGGG+TGG 0.513517 1_2:+52821683 None:intergenic
CTGTGTGTGATGGTGTTGTC+CGG 0.515312 1_2:+52821574 None:intergenic
TGTCTTGGATTTGTGAATGG+TGG 0.517202 1_2:-52825711 Msa0076640:intron
AATGAAGAGCAATAAAAGAA+TGG 0.521779 1_2:+52821900 None:intergenic
TTAGTGTAACAAAATTCAAA+AGG 0.525717 1_2:+52825855 None:intergenic
AAAGAATGGAAATGAAGTGT+TGG 0.528151 1_2:+52821914 None:intergenic
GAAACCGTTAGTTGATTGGA+TGG 0.531146 1_2:+52821516 None:intergenic
AATGTGACTGGGACACGATT+GGG 0.533667 1_2:-52825834 Msa0076640:CDS
TAATGTGACTGGGACACGAT+TGG 0.534463 1_2:-52825835 Msa0076640:CDS
CAAGGTTTAGTGGGACTAGT+GGG 0.538020 1_2:+52821770 None:intergenic
GGTGTCATCATCTTCGGTGA+TGG 0.539955 1_2:-52821304 Msa0076640:CDS
GGAAATGAAGTGTTGGAAGT+TGG 0.546352 1_2:+52821921 None:intergenic
CTAACAGGATTGATTAAAAG+TGG 0.551878 1_2:+52821208 None:intergenic
GATCGACGACAAGGTTTAGT+GGG 0.553683 1_2:+52821761 None:intergenic
AATGATTGTTGAGAGAAAGT+TGG 0.555404 1_2:+52821874 None:intergenic
AAAATGAAAATGTGGTTTGG+AGG 0.560548 1_2:-52825779 Msa0076640:CDS
AAAGCCGAAGCTAGTTGAGA+TGG 0.563385 1_2:+52826275 None:intergenic
GTCAAAAGGCATCTAGGCAG+TGG 0.564064 1_2:+52816676 None:intergenic
TTGGAAGTTGGTATTAGCCA+TGG 0.566270 1_2:+52821933 None:intergenic
GTAGGCACAGCCGCACCCAA+TGG 0.568851 1_2:+52816947 None:intergenic
AATGGTGAATATAAATGATG+AGG 0.569327 1_2:-52816870 Msa0076640:CDS
AATGGTGAATATAAATGATG+AGG 0.569327 1_2:-52825739 Msa0076640:CDS
CGCAGCTATCAGATTTGGCG+AGG 0.570249 1_2:+52821650 None:intergenic
TTAACGGTGGTGAGAATGCA+AGG 0.571745 1_2:-52816829 Msa0076640:CDS
TAAAACAACTCCCTTTGAAG+AGG 0.576429 1_2:+52826220 None:intergenic
CCTTCAGTCGAGTATTTCAT+CGG 0.578005 1_2:-52821157 Msa0076640:CDS
TTATCCATCCAATCAACTAA+CGG 0.578852 1_2:-52821520 Msa0076640:CDS
CTGCTGCAAGAAACATAAAG+AGG 0.579468 1_2:-52825893 Msa0076640:CDS
AGGTGGAACAAAGATTAGTA+CGG 0.580330 1_2:-52817116 Msa0076640:CDS
TTGTCAGCAAGAAAACTGTA+AGG 0.581100 1_2:+52821280 None:intergenic
ACGAGTAGCGCTGTGTGTGA+TGG 0.581239 1_2:+52821564 None:intergenic
TTTGTTACACTAATGTGACT+GGG 0.589924 1_2:-52825845 Msa0076640:CDS
GGACTTCTATTGTGATTGGA+GGG 0.590002 1_2:-52816808 Msa0076640:CDS
CCTTCAGCCGAGTATTTCAT+CGG 0.590645 1_2:-52826080 Msa0076640:CDS
TTTGGCGAGGGAACATTGGG+CGG 0.591287 1_2:+52821663 None:intergenic
CCCGGCTGCAACAACACTTG+TGG 0.592020 1_2:-52821604 Msa0076640:CDS
ACAGCTTCAGCTTTCTTACA+GGG 0.596772 1_2:-52821184 Msa0076640:CDS
TGCCGCCAAGATCGACGACA+AGG 0.599774 1_2:+52821752 None:intergenic
CCGTGCAGGGTGGTATGTAG+AGG 0.605441 1_2:+52821693 None:intergenic
TTTCACGCCGATGAAATACT+CGG 0.606909 1_2:+52826073 None:intergenic
CCGATGAAATACTCGACTGA+AGG 0.615446 1_2:+52821157 None:intergenic
CCGATGAAATACTCGGCTGA+AGG 0.617301 1_2:+52826080 None:intergenic
TGATGGTGTTGTCCGGAATG+AGG 0.617996 1_2:+52821581 None:intergenic
TCAACTAACGGTTTCAACCC+AGG 0.620038 1_2:-52821508 Msa0076640:CDS
TGCCTTGGATTTGTTAACGG+TGG 0.620484 1_2:-52816842 Msa0076640:CDS
TGTTTCTCATCACCAAAACC+CGG 0.623510 1_2:-52821622 Msa0076640:CDS
CACCACCGTTAACAAATCCA+AGG 0.627497 1_2:+52816840 None:intergenic
TGCTGCAAGAAACATAAAGA+GGG 0.632185 1_2:-52825892 Msa0076640:CDS
CCTCTACATACCACCCTGCA+CGG 0.636015 1_2:-52821693 Msa0076640:CDS
AGTCCTCGTAATAATGAAGT+CGG 0.639305 1_2:+52821445 None:intergenic
ACAAGGTTTAGTGGGACTAG+TGG 0.642896 1_2:+52821769 None:intergenic
AAAAGGCATCTAGGCAGTGG+AGG 0.650082 1_2:+52816679 None:intergenic
AAGGTTTAGTGGGACTAGTG+GGG 0.651701 1_2:+52821771 None:intergenic
CTCGCCAAATCTGATAGCTG+CGG 0.652873 1_2:-52821649 Msa0076640:CDS
TTATTACGAGGACTTGCAGG+TGG 0.658112 1_2:-52821436 Msa0076640:CDS
TGCAAGAAACATAAAGAGGG+TGG 0.665566 1_2:-52825889 Msa0076640:CDS
GCAGCTATCAGATTTGGCGA+GGG 0.669308 1_2:+52821651 None:intergenic
CTATAACAAAATTCAAAAGG+CGG 0.670292 1_2:+52816992 None:intergenic
GGTATGTAGAGGAAGTGTAG+TGG 0.694005 1_2:+52821704 None:intergenic
TAGTACGGTTGATCCTTACA+CGG 0.695224 1_2:-52817101 Msa0076640:CDS
ATCACACACAGCGCTACTCG+TGG 0.707277 1_2:-52821562 Msa0076640:CDS
GCACCGACTTCATTATTACG+AGG 0.720950 1_2:-52821448 Msa0076640:CDS
TGCAAGAAACATAACGACGG+AGG 0.729033 1_2:-52817023 Msa0076640:CDS
TGTTGCAAGAAACATAACGA+CGG 0.769802 1_2:-52817026 Msa0076640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTTTTTATTGG+AGG + chr1_2:52818794-52818813 None:intergenic 10.0%
!!! CTGAAATATTTTTTTTTTAT+TGG + chr1_2:52818797-52818816 None:intergenic 10.0%
!!! TTTTTTAAAAGATAAATACA+AGG + chr1_2:52819567-52819586 None:intergenic 10.0%
!! AATAAATAAATGAATATTGA+TGG - chr1_2:52820271-52820290 Msa0076640:intron 10.0%
!! ATAAATAAATGAATATTGAT+GGG - chr1_2:52820272-52820291 Msa0076640:intron 10.0%
!!! TTTTTTTTTTTTTTGATGAA+AGG - chr1_2:52821951-52821970 Msa0076640:intron 10.0%
!!! TTTTTTTTTTTTTGATGAAA+GGG - chr1_2:52821952-52821971 Msa0076640:intron 10.0%
!! TTATTTACTAATAATAATAC+AGG + chr1_2:52824895-52824914 None:intergenic 10.0%
!! ATGCAATTTATTATAAACAA+AGG + chr1_2:52817736-52817755 None:intergenic 15.0%
!!! TATTTTTTACAATAGTAAGT+TGG - chr1_2:52817976-52817995 Msa0076640:intron 15.0%
!!! ATTTTTTACAATAGTAAGTT+GGG - chr1_2:52817977-52817996 Msa0076640:intron 15.0%
!! CAAAATAAAAAGAAATGTTA+TGG - chr1_2:52818433-52818452 Msa0076640:intron 15.0%
!! ATTGAAGTATAATTATATTG+AGG + chr1_2:52819193-52819212 None:intergenic 15.0%
!!! ATAATATTTTTAGCATGTAA+AGG - chr1_2:52822591-52822610 Msa0076640:intron 15.0%
!!! TTATTTATTTGTTTTATGCA+TGG + chr1_2:52824161-52824180 None:intergenic 15.0%
!! ATGCATAAAACAAATAAATA+AGG - chr1_2:52824160-52824179 Msa0076640:intron 15.0%
!!! ATGAATGAATTGAAATTTTT+TGG - chr1_2:52825848-52825867 Msa0076640:CDS 15.0%
!! AAACTATAACAAAATTCAAA+AGG + chr1_2:52826010-52826029 None:intergenic 15.0%
!! TTAGTGTAACAAAATTCAAA+AGG + chr1_2:52817144-52817163 None:intergenic 20.0%
!!! TCTAAAAAAAATGCTGATTT+GGG + chr1_2:52817475-52817494 None:intergenic 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG + chr1_2:52817627-52817646 None:intergenic 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG + chr1_2:52817641-52817660 None:intergenic 20.0%
!! CTTGATAGAGTATAAAAAAA+AGG + chr1_2:52817695-52817714 None:intergenic 20.0%
!! GAGATATAATTAACTATTGA+TGG + chr1_2:52818113-52818132 None:intergenic 20.0%
!!! TTTTATGATCAAACTCAAAA+AGG - chr1_2:52818158-52818177 Msa0076640:intron 20.0%
!! TTATAGAGTAAAACCAATTT+AGG - chr1_2:52818378-52818397 Msa0076640:intron 20.0%
!! GGTTAAAAAAAGATTTCATT+TGG + chr1_2:52818621-52818640 None:intergenic 20.0%
!! AAATCATTATCATATATGCA+GGG + chr1_2:52819688-52819707 None:intergenic 20.0%
!! TTTATACAATCAATGATTGT+TGG - chr1_2:52819894-52819913 Msa0076640:intron 20.0%
!!! ATTGAGTTTGAAATATGTAT+CGG - chr1_2:52819974-52819993 Msa0076640:intron 20.0%
!! TATCATTCTGTCAAAAAATA+CGG + chr1_2:52820167-52820186 None:intergenic 20.0%
!! TATTAACCAATTATAGTTAG+TGG - chr1_2:52820226-52820245 Msa0076640:intron 20.0%
!! GTAAAAGAATTAATGTTTCA+AGG - chr1_2:52820294-52820313 Msa0076640:intron 20.0%
!! TTACATTGAATTATTAGATG+AGG - chr1_2:52820500-52820519 Msa0076640:intron 20.0%
!! TACATTGAATTATTAGATGA+GGG - chr1_2:52820501-52820520 Msa0076640:intron 20.0%
!! AGATTATCTTTGTATCTAAT+AGG + chr1_2:52820648-52820667 None:intergenic 20.0%
!!! TTGTACACAATAGTTTTTTT+AGG - chr1_2:52820817-52820836 Msa0076640:intron 20.0%
!!! TGTACACAATAGTTTTTTTA+GGG - chr1_2:52820818-52820837 Msa0076640:intron 20.0%
!! GTGAAAACAATAAAAATTGA+TGG - chr1_2:52821863-52821882 Msa0076640:CDS 20.0%
!!! TAAGATGTAATTTCTTTTTC+CGG + chr1_2:52821989-52822008 None:intergenic 20.0%
!! AATTAGAAAACTTCTTCAAA+TGG + chr1_2:52822184-52822203 None:intergenic 20.0%
!! ATTTGTTTACTAATGTCTAT+TGG + chr1_2:52822713-52822732 None:intergenic 20.0%
!!! AACGTATAAAACATTTTATG+TGG + chr1_2:52822947-52822966 None:intergenic 20.0%
!!! ATAAAATGTTTTATACGTTC+AGG - chr1_2:52822948-52822967 Msa0076640:intron 20.0%
!! ATTAAATCAATCAAAACATC+TGG - chr1_2:52824286-52824305 Msa0076640:intron 20.0%
!! TATTTATAAGATAGTGAGTA+AGG + chr1_2:52824545-52824564 None:intergenic 20.0%
!! TTTACTAATAATAATACAGG+AGG + chr1_2:52824892-52824911 None:intergenic 20.0%
!!! ACTAGCTGAAATTTTAAAAA+CGG + chr1_2:52825109-52825128 None:intergenic 20.0%
!!! GATTTTAATGATATTACAAG+TGG + chr1_2:52825687-52825706 None:intergenic 20.0%
!! AATTCATTCATCTAAAAATG+AGG + chr1_2:52825839-52825858 None:intergenic 20.0%
!!! AAATTTTTTGGTGATAAGTT+AGG - chr1_2:52825860-52825879 Msa0076640:CDS 20.0%
!! TTGTTTTCTATAGACAACAA+CGG - chr1_2:52816988-52817007 Msa0076640:CDS 25.0%
!! GTAAATAGAAGCTTCTAAAA+CGG + chr1_2:52817052-52817071 None:intergenic 25.0%
!! CTTTTTGCAAAATGAAAATG+TGG - chr1_2:52817209-52817228 Msa0076640:intron 25.0%
! AATGGTGAATATAAATGATG+AGG - chr1_2:52817257-52817276 Msa0076640:intron 25.0%
! TAATCTTGTGCAATTTGATA+TGG - chr1_2:52817356-52817375 Msa0076640:intron 25.0%
!! CTCTAAAAAAAATGCTGATT+TGG + chr1_2:52817476-52817495 None:intergenic 25.0%
! ATTGCATTGAAATTCATGTA+TGG - chr1_2:52817749-52817768 Msa0076640:intron 25.0%
!! TTTTCCCCTTTTTATACAAA+TGG - chr1_2:52817815-52817834 Msa0076640:intron 25.0%
! TCCAACCATTTGTATAAAAA+GGG + chr1_2:52817823-52817842 None:intergenic 25.0%
! ATCCAACCATTTGTATAAAA+AGG + chr1_2:52817824-52817843 None:intergenic 25.0%
! AACAAATACAGTATTTGCTT+AGG + chr1_2:52817886-52817905 None:intergenic 25.0%
!! TATGTTCATATTGACTACTT+TGG - chr1_2:52817944-52817963 Msa0076640:intron 25.0%
! ATAGAACAGAAACTAATCAA+AGG + chr1_2:52818056-52818075 None:intergenic 25.0%
! GACCAAATAAAAAGATGATT+TGG - chr1_2:52818215-52818234 Msa0076640:intron 25.0%
!! CACCAAATCATCTTTTTATT+TGG + chr1_2:52818220-52818239 None:intergenic 25.0%
!! TTGGTGTAGCAATTAATTTT+AGG - chr1_2:52818234-52818253 Msa0076640:intron 25.0%
! TTCAATACTCTTACCTAAAT+TGG + chr1_2:52818394-52818413 None:intergenic 25.0%
! TTATTTGTTTGTGTGTGAAT+CGG + chr1_2:52818508-52818527 None:intergenic 25.0%
!!! AAACATTGCTATTTTGGAAA+GGG + chr1_2:52819030-52819049 None:intergenic 25.0%
! TCAGTAATAGCACTTATATT+GGG + chr1_2:52819160-52819179 None:intergenic 25.0%
! TTCAGTAATAGCACTTATAT+TGG + chr1_2:52819161-52819180 None:intergenic 25.0%
! CAAATCATTATCATATATGC+AGG + chr1_2:52819689-52819708 None:intergenic 25.0%
! CAAAGTAAATACTCATACTA+GGG + chr1_2:52819743-52819762 None:intergenic 25.0%
! AATAATATGACACCTCATAA+TGG + chr1_2:52819781-52819800 None:intergenic 25.0%
!! TTATGAGGTGTCATATTATT+AGG - chr1_2:52819781-52819800 Msa0076640:intron 25.0%
! TTCATGTATAAGTGTATCAA+TGG + chr1_2:52820018-52820037 None:intergenic 25.0%
! TATACATGAATGTGTGTAAT+TGG - chr1_2:52820028-52820047 Msa0076640:intron 25.0%
! ATCATTCTGTCAAAAAATAC+GGG + chr1_2:52820166-52820185 None:intergenic 25.0%
! TGATTCATTCATCTCATTAT+AGG + chr1_2:52820374-52820393 None:intergenic 25.0%
! TGAGATGAATGAATCATTAA+AGG - chr1_2:52820378-52820397 Msa0076640:intron 25.0%
! TTATGTAACTTAGACTTTGT+TGG - chr1_2:52820408-52820427 Msa0076640:intron 25.0%
! TCTAACATACACAAGTAAAA+TGG - chr1_2:52820671-52820690 Msa0076640:intron 25.0%
! ATCAAATTGTAAAAACTGCA+TGG + chr1_2:52820704-52820723 None:intergenic 25.0%
! GTGTACAAATGAGAAAATAT+TGG + chr1_2:52820805-52820824 None:intergenic 25.0%
!!! GTACACAATAGTTTTTTTAG+GGG - chr1_2:52820819-52820838 Msa0076640:intron 25.0%
!!! TGATTGCTACATTATTTTTG+TGG + chr1_2:52820864-52820883 None:intergenic 25.0%
! TCTCATTAATGAATCAACAA+TGG - chr1_2:52820946-52820965 Msa0076640:intron 25.0%
! AAAATAGATAGATGTTGAGT+TGG + chr1_2:52821027-52821046 None:intergenic 25.0%
! AATGAAGAGCAATAAAAGAA+TGG + chr1_2:52821099-52821118 None:intergenic 25.0%
!!! TTTTGTTTTTCTTCTTCAGA+TGG - chr1_2:52821671-52821690 Msa0076640:CDS 25.0%
! TTGAATCAAATACAACGTTA+GGG + chr1_2:52821751-52821770 None:intergenic 25.0%
! TTTGAATCAAATACAACGTT+AGG + chr1_2:52821752-52821771 None:intergenic 25.0%
!!! TTTTTTTTTTGATGAAAGGG+AGG - chr1_2:52821955-52821974 Msa0076640:intron 25.0%
!!! TTTTTTTTTGATGAAAGGGA+GGG - chr1_2:52821956-52821975 Msa0076640:intron 25.0%
!! AAGATGTAATTTCTTTTTCC+GGG + chr1_2:52821988-52822007 None:intergenic 25.0%
! AAAACTTCTTCAAATGGAAT+GGG + chr1_2:52822178-52822197 None:intergenic 25.0%
! AGAATTAAATGTGGATTCTT+TGG + chr1_2:52822271-52822290 None:intergenic 25.0%
! GAAGATTGTTAACAAATTTG+AGG + chr1_2:52822911-52822930 None:intergenic 25.0%
!!! AATTTGTTAACAATCTTCCA+TGG - chr1_2:52822913-52822932 Msa0076640:intron 25.0%
!! ATTTTGCAATGTTGAATCAA+TGG + chr1_2:52823163-52823182 None:intergenic 25.0%
!!! TGGTTGATTTTAATGGTAAT+TGG + chr1_2:52823187-52823206 None:intergenic 25.0%
! GATGACTAATATTATTCCTA+GGG + chr1_2:52823669-52823688 None:intergenic 25.0%
! TGATGACTAATATTATTCCT+AGG + chr1_2:52823670-52823689 None:intergenic 25.0%
! AGGAATAATATTAGTCATCA+TGG - chr1_2:52823670-52823689 Msa0076640:intron 25.0%
! GGAATAATATTAGTCATCAT+GGG - chr1_2:52823671-52823690 Msa0076640:intron 25.0%
! TATGTTATTGATCAAGTGAA+TGG + chr1_2:52823785-52823804 None:intergenic 25.0%
!!! AGTGCTTTAGGAAAATATTT+GGG + chr1_2:52823851-52823870 None:intergenic 25.0%
!!! AAGTGCTTTAGGAAAATATT+TGG + chr1_2:52823852-52823871 None:intergenic 25.0%
! AACAAATAAATAAGGAGAGA+TGG - chr1_2:52824168-52824187 Msa0076640:intron 25.0%
! ACAAATAAATAAGGAGAGAT+GGG - chr1_2:52824169-52824188 Msa0076640:intron 25.0%
! GAAACAAATGTTAAATGGAA+TGG + chr1_2:52824244-52824263 None:intergenic 25.0%
! GTGTTGAAACAAATGTTAAA+TGG + chr1_2:52824249-52824268 None:intergenic 25.0%
!! TTGATTGATTTAATCATGCA+TGG + chr1_2:52824280-52824299 None:intergenic 25.0%
! AACAATCTTGGGATATTATA+GGG + chr1_2:52824711-52824730 None:intergenic 25.0%
! GTAAAAAACGTATTATGATG+CGG + chr1_2:52825212-52825231 None:intergenic 25.0%
!! GAATTTTCAAAGAGAAGTTA+AGG + chr1_2:52825271-52825290 None:intergenic 25.0%
! CTATAACAAAATTCAAAAGG+CGG + chr1_2:52826007-52826026 None:intergenic 25.0%
!! TTTTACAGAACAATGTGATT+TGG - chr1_2:52826083-52826102 Msa0076640:CDS 25.0%
! AATGGTGAATATAAATGATG+AGG - chr1_2:52817257-52817276 Msa0076640:intron 25.0%
! TAATGTTCTGCAATTTGATT+TGG - chr1_2:52826225-52826244 Msa0076640:CDS 25.0%
TATTTGTCTTTCCTCTTCAA+AGG - chr1_2:52816765-52816784 Msa0076640:CDS 30.0%
ATTTGTCTTTCCTCTTCAAA+GGG - chr1_2:52816766-52816785 Msa0076640:CDS 30.0%
!! TCAAAGGGAGTTGTTTTATT+CGG - chr1_2:52816781-52816800 Msa0076640:CDS 30.0%
TCTGAATCAAGAACAATGTT+GGG + chr1_2:52816829-52816848 None:intergenic 30.0%
! TTTTGTTACACTAATGTGAC+TGG - chr1_2:52817150-52817169 Msa0076640:intron 30.0%
TTTGTTACACTAATGTGACT+GGG - chr1_2:52817151-52817170 Msa0076640:intron 30.0%
TGCAAAATGAAAATGTGGTT+TGG - chr1_2:52817214-52817233 Msa0076640:intron 30.0%
! AAAATGAAAATGTGGTTTGG+AGG - chr1_2:52817217-52817236 Msa0076640:intron 30.0%
!! GATATTTGGTGCAAATTCAA+TGG - chr1_2:52817239-52817258 Msa0076640:intron 30.0%
!! AAAATGCTGATTTGGGAAAA+AGG + chr1_2:52817468-52817487 None:intergenic 30.0%
AATTCATGTATGGTTTGACA+AGG - chr1_2:52817759-52817778 Msa0076640:intron 30.0%
AAAGGGGAAAATACATTCTT+TGG + chr1_2:52817806-52817825 None:intergenic 30.0%
CCAACCATTTGTATAAAAAG+GGG + chr1_2:52817822-52817841 None:intergenic 30.0%
!! ATTTGCTTAGGTTTTAGTCT+TGG + chr1_2:52817874-52817893 None:intergenic 30.0%
!! GATTAGTTTCTGTTCTATCT+TGG - chr1_2:52818058-52818077 Msa0076640:intron 30.0%
AATAGTGATCAAGCCAAAAT+TGG - chr1_2:52818281-52818300 Msa0076640:intron 30.0%
TTGGAGGATAATATAGTACT+AGG + chr1_2:52818778-52818797 None:intergenic 30.0%
!! ATGATTTTGATCAGTGATGA+TGG + chr1_2:52818900-52818919 None:intergenic 30.0%
GTCTACAATTAGTGATGATT+TGG + chr1_2:52818977-52818996 None:intergenic 30.0%
TCAACTCTCAAGATTTCAAT+CGG - chr1_2:52818999-52819018 Msa0076640:intron 30.0%
!!! AACATTGCTATTTTGGAAAG+GGG + chr1_2:52819029-52819048 None:intergenic 30.0%
!!! CAAACATTGCTATTTTGGAA+AGG + chr1_2:52819031-52819050 None:intergenic 30.0%
CTTTCCAAAATAGCAATGTT+TGG - chr1_2:52819029-52819048 Msa0076640:intron 30.0%
!!! CTTACCAAACATTGCTATTT+TGG + chr1_2:52819036-52819055 None:intergenic 30.0%
CTAATTCTAATAGGCCTAAA+AGG + chr1_2:52819459-52819478 None:intergenic 30.0%
CAAGAGGAACTAATTCTAAT+AGG + chr1_2:52819468-52819487 None:intergenic 30.0%
AAAAGACTACTGTATACATG+AGG + chr1_2:52819513-52819532 None:intergenic 30.0%
GCAAAGTAAATACTCATACT+AGG + chr1_2:52819744-52819763 None:intergenic 30.0%
! TATATGCGCATAGAATTTTC+AGG + chr1_2:52819811-52819830 None:intergenic 30.0%
! TCATTGATTGTATAAACGTG+CGG + chr1_2:52819890-52819909 None:intergenic 30.0%
ATAAGTGTATCAATGGTTGT+TGG + chr1_2:52820011-52820030 None:intergenic 30.0%
CTTCCATAATTGAAGTTGAA+AGG - chr1_2:52820081-52820100 Msa0076640:intron 30.0%
CAACCTTTCAACTTCAATTA+TGG + chr1_2:52820087-52820106 None:intergenic 30.0%
!!! TCGACATGTTACTAGTTTTT+TGG + chr1_2:52820600-52820619 None:intergenic 30.0%
! GATGAGTTTTCTTGATTTAG+TGG - chr1_2:52820757-52820776 Msa0076640:intron 30.0%
! GGTGAAAACTAATTTGTACA+TGG - chr1_2:52820778-52820797 Msa0076640:intron 30.0%
!! TATTTTTGTGGCCAATTCTA+TGG + chr1_2:52820852-52820871 None:intergenic 30.0%
!! TGTTGATTCATTAATGAGAG+TGG + chr1_2:52820945-52820964 None:intergenic 30.0%
ATTTATACTTGGGATTGAGT+GGG + chr1_2:52820980-52820999 None:intergenic 30.0%
TATTTATACTTGGGATTGAG+TGG + chr1_2:52820981-52821000 None:intergenic 30.0%
AGGCAACTCTATTTATACTT+GGG + chr1_2:52820990-52821009 None:intergenic 30.0%
AAAGAATGGAAATGAAGTGT+TGG + chr1_2:52821085-52821104 None:intergenic 30.0%
AATGATTGTTGAGAGAAAGT+TGG + chr1_2:52821125-52821144 None:intergenic 30.0%
TTATCCATCCAATCAACTAA+CGG - chr1_2:52821476-52821495 Msa0076640:CDS 30.0%
! AAACAACTACATTTTGTCCT+GGG + chr1_2:52821508-52821527 None:intergenic 30.0%
CTAACAGGATTGATTAAAAG+TGG + chr1_2:52821791-52821810 None:intergenic 30.0%
TTGTTGTCCATAGATAACAA+AGG - chr1_2:52821911-52821930 Msa0076640:CDS 30.0%
!!! TTTTTTTTGATGAAAGGGAG+GGG - chr1_2:52821957-52821976 Msa0076640:intron 30.0%
AATTACATCTTAATCAAGCG+CGG - chr1_2:52821997-52822016 Msa0076640:intron 30.0%
AACAAATGGGTAATTTGAGT+CGG - chr1_2:52822048-52822067 Msa0076640:intron 30.0%
CTAATATTGGATGTATCATG+GGG + chr1_2:52822101-52822120 None:intergenic 30.0%
GCTAATATTGGATGTATCAT+GGG + chr1_2:52822102-52822121 None:intergenic 30.0%
AGCTAATATTGGATGTATCA+TGG + chr1_2:52822103-52822122 None:intergenic 30.0%
GAAAACTTCTTCAAATGGAA+TGG + chr1_2:52822179-52822198 None:intergenic 30.0%
TTGTGAACATTATTACGAGT+GGG + chr1_2:52822245-52822264 None:intergenic 30.0%
ATTAAATGTGGATTCTTTGG+TGG + chr1_2:52822268-52822287 None:intergenic 30.0%
CACTGCAATAGAATTAAATG+TGG + chr1_2:52822280-52822299 None:intergenic 30.0%
! TTTTAGCATGTAAAGGTCTT+TGG - chr1_2:52822598-52822617 Msa0076640:intron 30.0%
! TATTTGGAATTGGAGAAACA+AGG + chr1_2:52822643-52822662 None:intergenic 30.0%
TGTCTATTGGAATCATAATG+TGG + chr1_2:52822700-52822719 None:intergenic 30.0%
TTGAAGGTGATTTATCTACT+TGG + chr1_2:52822746-52822765 None:intergenic 30.0%
!! GTCTGAAATTCATGTTTTGA+GGG + chr1_2:52822832-52822851 None:intergenic 30.0%
!! AGTCTGAAATTCATGTTTTG+AGG + chr1_2:52822833-52822852 None:intergenic 30.0%
! AATTTGAGGAAGCATAAGAT+GGG + chr1_2:52822897-52822916 None:intergenic 30.0%
! AAATTTGAGGAAGCATAAGA+TGG + chr1_2:52822898-52822917 None:intergenic 30.0%
CGGAATATCAATTTCTAACT+CGG - chr1_2:52823238-52823257 Msa0076640:intron 30.0%
!!! CGAAATATTTTTTGGTCGAT+AGG + chr1_2:52823323-52823342 None:intergenic 30.0%
!!! CGTTAGAGCGAAATATTTTT+TGG + chr1_2:52823331-52823350 None:intergenic 30.0%
GTTATTTATTGCAAAACCGT+CGG + chr1_2:52823393-52823412 None:intergenic 30.0%
TTTGCAATAAATAACTCAGC+AGG - chr1_2:52823398-52823417 Msa0076640:intron 30.0%
TTAGTCATCATGGGATATAT+TGG - chr1_2:52823680-52823699 Msa0076640:intron 30.0%
!!! AGATTTTTTGTGACATGTCT+GGG + chr1_2:52823973-52823992 None:intergenic 30.0%
!!! AAGATTTTTTGTGACATGTC+TGG + chr1_2:52823974-52823993 None:intergenic 30.0%
TATACATGAGAATATCGTTG+TGG + chr1_2:52824446-52824465 None:intergenic 30.0%
! CGAAATTGATTCACAAATTC+CGG - chr1_2:52824586-52824605 Msa0076640:intron 30.0%
CAACAATCTTGGGATATTAT+AGG + chr1_2:52824712-52824731 None:intergenic 30.0%
!! AGCTGAAATTTTAAAAACGG+AGG + chr1_2:52825106-52825125 None:intergenic 30.0%
!!! TACGTTTTTTACGAGAAAGA+AGG - chr1_2:52825220-52825239 Msa0076640:intron 30.0%
AAATTCATACAACGATATGC+TGG + chr1_2:52825337-52825356 None:intergenic 30.0%
GGATAATAGAACGATTCTTT+GGG + chr1_2:52825763-52825782 None:intergenic 30.0%
AGGATAATAGAACGATTCTT+TGG + chr1_2:52825764-52825783 None:intergenic 30.0%
ATCGTTCTATTATCCTCATT+AGG - chr1_2:52825768-52825787 Msa0076640:CDS 30.0%
TCTAAAAATGAGGTTTGAGA+AGG + chr1_2:52825829-52825848 None:intergenic 30.0%
!!! TTTTTTGGTGATAAGTTAGG+TGG - chr1_2:52825863-52825882 Msa0076640:CDS 30.0%
!!! TATAGTTTTGACAATTTGCC+AGG - chr1_2:52826022-52826041 Msa0076640:CDS 30.0%
!!! ATAGTTTTGACAATTTGCCA+GGG - chr1_2:52826023-52826042 Msa0076640:CDS 30.0%
TGTAAAACAAGCTCAATTGT+AGG + chr1_2:52826070-52826089 None:intergenic 30.0%
! TTGAGATGGAAGAGCAATTT+TGG + chr1_2:52816710-52816729 None:intergenic 35.0%
! TAAAACAACTCCCTTTGAAG+AGG + chr1_2:52816779-52816798 None:intergenic 35.0%
!! CAAAGGGAGTTGTTTTATTC+GGG - chr1_2:52816782-52816801 Msa0076640:CDS 35.0%
!! AAAGGGAGTTGTTTTATTCG+GGG - chr1_2:52816783-52816802 Msa0076640:CDS 35.0%
ATGTTGGGAAGAAAACCATA+AGG + chr1_2:52816814-52816833 None:intergenic 35.0%
GTCTGAATCAAGAACAATGT+TGG + chr1_2:52816830-52816849 None:intergenic 35.0%
CTAACAGGATTGATCAAAAG+CGG + chr1_2:52816868-52816887 None:intergenic 35.0%
TGGTGGAACAAAGATTAGTA+CGG - chr1_2:52817014-52817033 Msa0076640:CDS 35.0%
TGCTGCAAGAAACATAAAGA+GGG - chr1_2:52817104-52817123 Msa0076640:CDS 35.0%
! AAACATAAAGAGGGTGGATT+CGG - chr1_2:52817113-52817132 Msa0076640:CDS 35.0%
TGCAAAAAGAGCTCAATAGT+AGG + chr1_2:52817198-52817217 None:intergenic 35.0%
! AATGTGGTTTGGAGGATATT+TGG - chr1_2:52817225-52817244 Msa0076640:intron 35.0%
!! AATGATGAGGTTTTGTGTCT+TGG - chr1_2:52817270-52817289 Msa0076640:intron 35.0%
TTGTGTCTTGGATTTGTGAA+TGG - chr1_2:52817282-52817301 Msa0076640:intron 35.0%
TGAATGGTGGTAAGAATACA+AGG - chr1_2:52817298-52817317 Msa0076640:intron 35.0%
ACAAGGACTTCAATTGTGAT+TGG - chr1_2:52817315-52817334 Msa0076640:intron 35.0%
TGATATGGCTGCTTCTAAAT+TGG - chr1_2:52817371-52817390 Msa0076640:intron 35.0%
GATATGGCTGCTTCTAAATT+GGG - chr1_2:52817372-52817391 Msa0076640:intron 35.0%
CACTATTTGCCACAATTCAA+GGG - chr1_2:52817563-52817582 Msa0076640:intron 35.0%
ACTATTTGCCACAATTCAAG+GGG - chr1_2:52817564-52817583 Msa0076640:intron 35.0%
! CCCCTTTTTATACAAATGGT+TGG - chr1_2:52817819-52817838 Msa0076640:intron 35.0%
GATCAAGCCAAAATTGGATT+TGG - chr1_2:52818287-52818306 Msa0076640:intron 35.0%
! TGTCACTCCAAATCCAATTT+TGG + chr1_2:52818297-52818316 None:intergenic 35.0%
AAGAAACTAATCCCTTAAGC+TGG + chr1_2:52818465-52818484 None:intergenic 35.0%
! TTTGAAGTTCGAAGATCTCA+AGG - chr1_2:52818556-52818575 Msa0076640:intron 35.0%
TTGTGAATCGGTGATGAAAT+CGG + chr1_2:52818873-52818892 None:intergenic 35.0%
! GATGATGGTTGTTTGTGAAT+CGG + chr1_2:52818885-52818904 None:intergenic 35.0%
!! TAGTGATGATTTGGTCAAGA+AGG + chr1_2:52818968-52818987 None:intergenic 35.0%
! GAATTAGTTCCTCTTGCTTT+TGG - chr1_2:52819472-52819491 Msa0076640:intron 35.0%
!! ACAGTAGTCTTTTTCACCTA+TGG - chr1_2:52819520-52819539 Msa0076640:intron 35.0%
!! CAGTAGTCTTTTTCACCTAT+GGG - chr1_2:52819521-52819540 Msa0076640:intron 35.0%
ATGGAAGAGCTAAACGAATT+TGG + chr1_2:52820068-52820087 None:intergenic 35.0%
GTTGAAAGGTTGAAGTTCAA+AGG - chr1_2:52820095-52820114 Msa0076640:intron 35.0%
ATCTTAACGTGATACACAAG+TGG + chr1_2:52820140-52820159 None:intergenic 35.0%
CTTGCTCCACTAACTATAAT+TGG + chr1_2:52820235-52820254 None:intergenic 35.0%
GTAACTTAGACTTTGTTGGT+TGG - chr1_2:52820412-52820431 Msa0076640:intron 35.0%
GTAACATGTCGAGATATTGT+AGG - chr1_2:52820608-52820627 Msa0076640:intron 35.0%
GAGGCAACTCTATTTATACT+TGG + chr1_2:52820991-52821010 None:intergenic 35.0%
TCCATATATATCTCTAGCCA+TGG - chr1_2:52821046-52821065 Msa0076640:intron 35.0%
! GAAACAACTACATTTTGTCC+TGG + chr1_2:52821509-52821528 None:intergenic 35.0%
AGTCCTCGTAATAATGAAGT+CGG + chr1_2:52821554-52821573 None:intergenic 35.0%
TTGTCAGCAAGAAAACTGTA+AGG + chr1_2:52821719-52821738 None:intergenic 35.0%
! TCCATAGATAACAAAGGTGT+TGG - chr1_2:52821917-52821936 Msa0076640:CDS 35.0%
! ACCAACACCTTTGTTATCTA+TGG + chr1_2:52821921-52821940 None:intergenic 35.0%
!! ATAGATAACAAAGGTGTTGG+TGG - chr1_2:52821920-52821939 Msa0076640:CDS 35.0%
TTGATCAGCAGCTAACAAAT+GGG - chr1_2:52822035-52822054 Msa0076640:intron 35.0%
GTTGTGAACATTATTACGAG+TGG + chr1_2:52822246-52822265 None:intergenic 35.0%
! CGGGGTTCTCTAAATTTTTA+GGG + chr1_2:52822374-52822393 None:intergenic 35.0%
ATTGGAATCATAATGTGGAG+TGG + chr1_2:52822695-52822714 None:intergenic 35.0%
GCAAGAACAAGTTTCTTTGA+AGG + chr1_2:52822762-52822781 None:intergenic 35.0%
! ATTTGAGGAAGCATAAGATG+GGG + chr1_2:52822896-52822915 None:intergenic 35.0%
TTTATGTGGATGCTTTACCA+TGG + chr1_2:52822933-52822952 None:intergenic 35.0%
! ATGAGACTTGGTTAAAGTTG+TGG + chr1_2:52822986-52823005 None:intergenic 35.0%
AAATGACAAGCAAATGTGGT+CGG + chr1_2:52823081-52823100 None:intergenic 35.0%
ATGGAAATGACAAGCAAATG+TGG + chr1_2:52823085-52823104 None:intergenic 35.0%
TCATTTCCATCATTCTCATC+CGG - chr1_2:52823095-52823114 Msa0076640:intron 35.0%
ATCCTCTGAACAACATCATA+AGG - chr1_2:52823134-52823153 Msa0076640:intron 35.0%
!! GCAGATCTGGTTGATTTTAA+TGG + chr1_2:52823194-52823213 None:intergenic 35.0%
TTCATCTCTTTACACTGTTG+CGG - chr1_2:52823218-52823237 Msa0076640:intron 35.0%
AAAATATTTCGCTCTAACGC+AGG - chr1_2:52823332-52823351 Msa0076640:intron 35.0%
TTCTGGATCAACTTCTCTTT+GGG + chr1_2:52823462-52823481 None:intergenic 35.0%
TTTCTGGATCAACTTCTCTT+TGG + chr1_2:52823463-52823482 None:intergenic 35.0%
GAGACTCGATGTAATGAATA+AGG + chr1_2:52823516-52823535 None:intergenic 35.0%
AATCCAACGACAGTTCATAT+GGG + chr1_2:52823624-52823643 None:intergenic 35.0%
AAATCCAACGACAGTTCATA+TGG + chr1_2:52823625-52823644 None:intergenic 35.0%
! TACTGAAAATCTGCTCGTTT+TGG - chr1_2:52823803-52823822 Msa0076640:intron 35.0%
TTCAAGGAAACAAGTGCTTT+AGG + chr1_2:52823863-52823882 None:intergenic 35.0%
! TTTTCCAAAAATGTGCATCG+AGG + chr1_2:52823917-52823936 None:intergenic 35.0%
! GCGGATGATCTTTTACTATA+TGG + chr1_2:52824040-52824059 None:intergenic 35.0%
ATCATCCGCAAACATTAGAT+GGG - chr1_2:52824051-52824070 Msa0076640:intron 35.0%
GATATCCCATCTAATGTTTG+CGG + chr1_2:52824059-52824078 None:intergenic 35.0%
AACATTAGATGGGATATCAC+CGG - chr1_2:52824061-52824080 Msa0076640:intron 35.0%
ATGAAGTTAACCAAGGTAGT+TGG + chr1_2:52824114-52824133 None:intergenic 35.0%
ATCACTCATGAAGTTAACCA+AGG + chr1_2:52824121-52824140 None:intergenic 35.0%
! TTAACTGGGACTTTATTTGG+AGG + chr1_2:52824333-52824352 None:intergenic 35.0%
TGCTTAACTGGGACTTTATT+TGG + chr1_2:52824336-52824355 None:intergenic 35.0%
ATAGTGAGTAAGGTTGTTGT+TGG + chr1_2:52824535-52824554 None:intergenic 35.0%
ATAGTGTTGCAAAGCGATAT+CGG - chr1_2:52824562-52824581 Msa0076640:intron 35.0%
AATTCCGGTTGATTGATCTT+CGG - chr1_2:52824601-52824620 Msa0076640:intron 35.0%
AATTCCGAAGATCAATCAAC+CGG + chr1_2:52824608-52824627 None:intergenic 35.0%
!! TTAACCATGCTTAGTTTGTC+AGG - chr1_2:52824646-52824665 Msa0076640:intron 35.0%
! GTGATTTTGTTAGAGATGTG+TGG + chr1_2:52824678-52824697 None:intergenic 35.0%
TGGCTTCTTTCAACAATCTT+GGG + chr1_2:52824722-52824741 None:intergenic 35.0%
TCAAATTGATGTTGCTGCTA+TGG + chr1_2:52824839-52824858 None:intergenic 35.0%
ATAGCAGCAACATCAATTTG+AGG - chr1_2:52824838-52824857 Msa0076640:intron 35.0%
ATAATAATACAGGAGGTCGA+TGG + chr1_2:52824885-52824904 None:intergenic 35.0%
ACCAATCTTTGCAGAATAGT+CGG - chr1_2:52824934-52824953 Msa0076640:intron 35.0%
TTATGCTTCGAAACAGTGAA+GGG + chr1_2:52824975-52824994 None:intergenic 35.0%
! AGTGATAATAGCGAGTATTG+CGG - chr1_2:52825031-52825050 Msa0076640:intron 35.0%
TTCAAAGAGAAGTTAAGGAG+TGG + chr1_2:52825266-52825285 None:intergenic 35.0%
! AGTTTAGGTTTGAAAGTGCA+TGG + chr1_2:52825368-52825387 None:intergenic 35.0%
ACTTTCAAACCTAAACTGTC+TGG - chr1_2:52825371-52825390 Msa0076640:intron 35.0%
CTTTCAAACCTAAACTGTCT+GGG - chr1_2:52825372-52825391 Msa0076640:intron 35.0%
CATATTGAATATCACCCTTC+AGG - chr1_2:52825400-52825419 Msa0076640:intron 35.0%
TTGTCGTATCTTTGAACGTT+TGG + chr1_2:52825529-52825548 None:intergenic 35.0%
!! TTGTTAGACATTGGTTCTGT+TGG + chr1_2:52825588-52825607 None:intergenic 35.0%
GCATGTCAATTGTTAGACAT+TGG + chr1_2:52825597-52825616 None:intergenic 35.0%
CAGATAATATGAATCAACCG+TGG + chr1_2:52825722-52825741 None:intergenic 35.0%
TAATAGAACGATTCTTTGGG+AGG + chr1_2:52825760-52825779 None:intergenic 35.0%
AATGAGGTTTGAGAAGGAAA+GGG + chr1_2:52825823-52825842 None:intergenic 35.0%
AAATGAGGTTTGAGAAGGAA+AGG + chr1_2:52825824-52825843 None:intergenic 35.0%
AGGTGGAACAAAGATTAGTA+CGG - chr1_2:52825880-52825899 Msa0076640:CDS 35.0%
TGTTGCAAGAAACATAACGA+CGG - chr1_2:52825970-52825989 Msa0076640:intron 35.0%
! AATGTGATTTGGAGCATGTT+TGG - chr1_2:52826094-52826113 Msa0076640:intron 35.0%
!! CATGTTTGGTGCAAATTCAA+TGG - chr1_2:52826108-52826127 Msa0076640:intron 35.0%
!! TTGTGCCTTGGATTTGTTAA+CGG - chr1_2:52826151-52826170 Msa0076640:intron 35.0%
! TCTTCCATCTCAACTAGCTT+CGG - chr1_2:52816717-52816736 Msa0076640:CDS 40.0%
TTTCACGCCGATGAAATACT+CGG + chr1_2:52816926-52816945 None:intergenic 40.0%
!! GAAGCTTCTAAAACGGTGTA+AGG + chr1_2:52817045-52817064 None:intergenic 40.0%
CTGCTGCAAGAAACATAAAG+AGG - chr1_2:52817103-52817122 Msa0076640:CDS 40.0%
TGCAAGAAACATAAAGAGGG+TGG - chr1_2:52817107-52817126 Msa0076640:CDS 40.0%
TGTCTTGGATTTGTGAATGG+TGG - chr1_2:52817285-52817304 Msa0076640:intron 40.0%
AGGACTTCAATTGTGATTGG+AGG - chr1_2:52817318-52817337 Msa0076640:intron 40.0%
GGACTTCAATTGTGATTGGA+GGG - chr1_2:52817319-52817338 Msa0076640:intron 40.0%
!! GATTTGGGAAAAAGGCATCT+AGG + chr1_2:52817460-52817479 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr1_2:52817554-52817573 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr1_2:52817562-52817581 Msa0076640:intron 40.0%
CTATTTGCCACAATTCAAGG+GGG - chr1_2:52817565-52817584 Msa0076640:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr1_2:52817588-52817607 Msa0076640:intron 40.0%
TTATGGCCATATCCAGCTTA+AGG - chr1_2:52818450-52818469 Msa0076640:intron 40.0%
TATGGCCATATCCAGCTTAA+GGG - chr1_2:52818451-52818470 Msa0076640:intron 40.0%
CTAATCCCTTAAGCTGGATA+TGG + chr1_2:52818459-52818478 None:intergenic 40.0%
!! TCGGTTCGATTTGGATTACT+CGG + chr1_2:52818642-52818661 None:intergenic 40.0%
TGACTATCTTCCACATATGC+AGG - chr1_2:52818670-52818689 Msa0076640:intron 40.0%
! AAAATTTGAGGCCCATCCTT+GGG + chr1_2:52818741-52818760 None:intergenic 40.0%
! AAAAATTTGAGGCCCATCCT+TGG + chr1_2:52818742-52818761 None:intergenic 40.0%
GATTCACATCATCACTCATC+AGG - chr1_2:52818925-52818944 Msa0076640:intron 40.0%
GTCAAGAAGGAAGAAGAAGA+AGG + chr1_2:52818955-52818974 None:intergenic 40.0%
CAACAAAAATCCCACAAAGC+TGG + chr1_2:52819341-52819360 None:intergenic 40.0%
! TTGTTGTTGTTGTGACTGCT+TGG - chr1_2:52819355-52819374 Msa0076640:intron 40.0%
! GGTTTCATTTTCTGTCCTCT+TGG - chr1_2:52819428-52819447 Msa0076640:intron 40.0%
!! TCCTCTTGGTTTAGCCTTTT+AGG - chr1_2:52819442-52819461 Msa0076640:intron 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG - chr1_2:52819479-52819498 Msa0076640:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - chr1_2:52819483-52819502 Msa0076640:intron 40.0%
TATATATGCGGTACACCCAT+AGG + chr1_2:52819539-52819558 None:intergenic 40.0%
ATGGGTGTACCGCATATATA+CGG - chr1_2:52819539-52819558 Msa0076640:intron 40.0%
!! TACAAGGTGCCGTATATATG+CGG + chr1_2:52819551-52819570 None:intergenic 40.0%
TGACACCTCATAATGGTGAT+TGG + chr1_2:52819774-52819793 None:intergenic 40.0%
TTAACGTGATACACAAGTGG+TGG + chr1_2:52820137-52820156 None:intergenic 40.0%
GGTTGGATATCAGTATCTCT+AGG - chr1_2:52820429-52820448 Msa0076640:intron 40.0%
CATTAATGAGAGTGGCACTA+AGG + chr1_2:52820937-52820956 None:intergenic 40.0%
!! AGATAGATGTTGAGTTGGAG+AGG + chr1_2:52821022-52821041 None:intergenic 40.0%
GCCATGGCTAGAGATATATA+TGG + chr1_2:52821050-52821069 None:intergenic 40.0%
!! TTGGAAGTTGGTATTAGCCA+TGG + chr1_2:52821066-52821085 None:intergenic 40.0%
!! GGAAATGAAGTGTTGGAAGT+TGG + chr1_2:52821078-52821097 None:intergenic 40.0%
! TTGCGCTATCTTTTGTGACA+GGG + chr1_2:52821169-52821188 None:intergenic 40.0%
CGCAACAACACTACAATACT+TGG - chr1_2:52821184-52821203 Msa0076640:CDS 40.0%
TGTTTCTCATCACCAAAACC+CGG - chr1_2:52821374-52821393 Msa0076640:intron 40.0%
GAAACCGTTAGTTGATTGGA+TGG + chr1_2:52821483-52821502 None:intergenic 40.0%
GGTTGAAACCGTTAGTTGAT+TGG + chr1_2:52821487-52821506 None:intergenic 40.0%
TCATTATTACGAGGACTTGC+AGG - chr1_2:52821557-52821576 Msa0076640:CDS 40.0%
!!! GATTTTGGTTCTTCCAAGAC+CGG + chr1_2:52821600-52821619 None:intergenic 40.0%
! TTGAGATGGAAGAGCGATTT+TGG + chr1_2:52821615-52821634 None:intergenic 40.0%
AAAGCAGAAGCTAGTTGAGA+TGG + chr1_2:52821629-52821648 None:intergenic 40.0%
!! TCAGATGGTGTCATCATCTT+CGG - chr1_2:52821686-52821705 Msa0076640:CDS 40.0%
ACAGCTTCAGCTTTCTTACA+GGG - chr1_2:52821812-52821831 Msa0076640:CDS 40.0%
CCTTCAGTCGAGTATTTCAT+CGG - chr1_2:52821839-52821858 Msa0076640:CDS 40.0%
TTTGTTAGCTGCTGATCAAG+CGG + chr1_2:52822034-52822053 None:intergenic 40.0%
CTTGATCAGCAGCTAACAAA+TGG - chr1_2:52822034-52822053 Msa0076640:intron 40.0%
GCTGATGCGTTAGCTAATAT+TGG + chr1_2:52822114-52822133 None:intergenic 40.0%
ACTCGTATCGTGAAGCAAAT+AGG + chr1_2:52822140-52822159 None:intergenic 40.0%
TCAAATGGAATGGGAAGTGA+AGG + chr1_2:52822169-52822188 None:intergenic 40.0%
GAACATTATTACGAGTGGGA+AGG + chr1_2:52822241-52822260 None:intergenic 40.0%
! TGCTTTTACTGCAGAGCTTT+GGG + chr1_2:52822343-52822362 None:intergenic 40.0%
! ATGCTTTTACTGCAGAGCTT+TGG + chr1_2:52822344-52822363 None:intergenic 40.0%
! GCGGGGTTCTCTAAATTTTT+AGG + chr1_2:52822375-52822394 None:intergenic 40.0%
TGGAGGACTTATTAGAGGTT+CGG + chr1_2:52822412-52822431 None:intergenic 40.0%
TTGTAAGGATGGTAGTATCG+CGG + chr1_2:52822439-52822458 None:intergenic 40.0%
TGGGTCAAGATCAATACTGA+CGG + chr1_2:52822465-52822484 None:intergenic 40.0%
! CTTGTCACGCTATTTGGAAT+TGG + chr1_2:52822653-52822672 None:intergenic 40.0%
GAATCATAATGTGGAGTGGA+GGG + chr1_2:52822691-52822710 None:intergenic 40.0%
TCATGACAGAACCTACACAT+AGG - chr1_2:52822861-52822880 Msa0076640:intron 40.0%
GGATAGGTAATCCTATGTGT+AGG + chr1_2:52822875-52822894 None:intergenic 40.0%
! TGTGGTCGGTTTCTTCTAAT+GGG + chr1_2:52823067-52823086 None:intergenic 40.0%
! ATGTGGTCGGTTTCTTCTAA+TGG + chr1_2:52823068-52823087 None:intergenic 40.0%
TGCCTTATGATGTTGTTCAG+AGG + chr1_2:52823139-52823158 None:intergenic 40.0%
GCAACAGTGTAAAGAGATGA+AGG + chr1_2:52823219-52823238 None:intergenic 40.0%
! AGTCAAATGTGGATTGAGGA+GGG + chr1_2:52823275-52823294 None:intergenic 40.0%
! ATAGGCGATGGAAAAAGTGT+TGG + chr1_2:52823305-52823324 None:intergenic 40.0%
!!! ATTTTTTGGTCGATAGGCGA+TGG + chr1_2:52823317-52823336 None:intergenic 40.0%
! GGAAGGCTTTAGTAAAGCTA+TGG + chr1_2:52823358-52823377 None:intergenic 40.0%
!! CTGGGTTGGAGTATATTTTC+TGG + chr1_2:52823479-52823498 None:intergenic 40.0%
AAGGCGTGCATAATGAAACT+GGG + chr1_2:52823497-52823516 None:intergenic 40.0%
TAAGGCGTGCATAATGAAAC+TGG + chr1_2:52823498-52823517 None:intergenic 40.0%
TCAAAACCAAAAGTCGTTGG+TGG + chr1_2:52823551-52823570 None:intergenic 40.0%
GTGTCAAAACCAAAAGTCGT+TGG + chr1_2:52823554-52823573 None:intergenic 40.0%
GAGATACCATGCTGTTAGTT+GGG + chr1_2:52823582-52823601 None:intergenic 40.0%
AGAGATACCATGCTGTTAGT+TGG + chr1_2:52823583-52823602 None:intergenic 40.0%
ATCCAACGACAGTTCATATG+GGG + chr1_2:52823623-52823642 None:intergenic 40.0%
! TACTCCTCGATGCACATTTT+TGG - chr1_2:52823910-52823929 Msa0076640:intron 40.0%
GATCATCCGCAAACATTAGA+TGG - chr1_2:52824050-52824069 Msa0076640:intron 40.0%
!! GAAGTGTTTTCCAACTACCT+TGG - chr1_2:52824101-52824120 Msa0076640:intron 40.0%
ATGTTAAATGGAATGGAGCG+AGG + chr1_2:52824237-52824256 None:intergenic 40.0%
TGGAAAACCAATCTCCTTCA+AGG - chr1_2:52824306-52824325 Msa0076640:intron 40.0%
! CTTTATTTGGAGGACCTTGA+AGG + chr1_2:52824323-52824342 None:intergenic 40.0%
AGCATACGACATGCTTAACT+GGG + chr1_2:52824347-52824366 None:intergenic 40.0%
AAGCATACGACATGCTTAAC+TGG + chr1_2:52824348-52824367 None:intergenic 40.0%
TTCTCATGTATACTACGTCC+CGG - chr1_2:52824454-52824473 Msa0076640:intron 40.0%
!!! CATCAGACTGGTTTTATTCC+GGG + chr1_2:52824475-52824494 None:intergenic 40.0%
!!! GCATCAGACTGGTTTTATTC+CGG + chr1_2:52824476-52824495 None:intergenic 40.0%
GGAATAAAACCAGTCTGATG+CGG - chr1_2:52824475-52824494 Msa0076640:intron 40.0%
! TGAGTAAGGTTGTTGTTGGT+AGG + chr1_2:52824531-52824550 None:intergenic 40.0%
CTGGCTTCTTTCAACAATCT+TGG + chr1_2:52824723-52824742 None:intergenic 40.0%
! TTTTAGCATGAACCCTTGGA+AGG + chr1_2:52824770-52824789 None:intergenic 40.0%
TCCGACTATTCTGCAAAGAT+TGG + chr1_2:52824938-52824957 None:intergenic 40.0%
TATGCTTCGAAACAGTGAAG+GGG + chr1_2:52824974-52824993 None:intergenic 40.0%
GTTATGCTTCGAAACAGTGA+AGG + chr1_2:52824976-52824995 None:intergenic 40.0%
TTCAACGTTCAAGAGCGAAA+TGG + chr1_2:52825071-52825090 None:intergenic 40.0%
!! TTCAGAAGAGGTTGGTATCA+GGG + chr1_2:52825179-52825198 None:intergenic 40.0%
!! ATTCAGAAGAGGTTGGTATC+AGG + chr1_2:52825180-52825199 None:intergenic 40.0%
! CGTATTATGATGCGGATTGA+GGG + chr1_2:52825204-52825223 None:intergenic 40.0%
! ACGTATTATGATGCGGATTG+AGG + chr1_2:52825205-52825224 None:intergenic 40.0%
GAGAAGTTAAGGAGTGGAAA+TGG + chr1_2:52825260-52825279 None:intergenic 40.0%
! GTTTGAAAGTGCATGGTTGT+TGG + chr1_2:52825361-52825380 None:intergenic 40.0%
CCGTTGCTTATTTACCTGAA+GGG + chr1_2:52825417-52825436 None:intergenic 40.0%
CCCTTCAGGTAAATAAGCAA+CGG - chr1_2:52825414-52825433 Msa0076640:intron 40.0%
CCTTCAGGTAAATAAGCAAC+GGG - chr1_2:52825415-52825434 Msa0076640:intron 40.0%
ATACGACAACCTCGATAGAT+AGG - chr1_2:52825540-52825559 Msa0076640:intron 40.0%
!! ACATTGGTTCTGTTGGTTCT+CGG + chr1_2:52825581-52825600 None:intergenic 40.0%
ACAAGTGGCCATGAAAAGAA+AGG + chr1_2:52825672-52825691 None:intergenic 40.0%
TGTCTATGCTAGTCCTAATG+AGG + chr1_2:52825784-52825803 None:intergenic 40.0%
! TCATTAGGACTAGCATAGAC+AGG - chr1_2:52825783-52825802 Msa0076640:CDS 40.0%
! CATTAGGACTAGCATAGACA+GGG - chr1_2:52825784-52825803 Msa0076640:CDS 40.0%
! ATTAGGACTAGCATAGACAG+GGG - chr1_2:52825785-52825804 Msa0076640:CDS 40.0%
TAGTACGGTTGATCCTTACA+CGG - chr1_2:52817029-52817048 Msa0076640:CDS 40.0%
!! GAAGCTTCTAAAACCGTGTA+AGG + chr1_2:52825911-52825930 None:intergenic 40.0%
!! AATGATGAGGTTTTGTGCCT+TGG - chr1_2:52826139-52826158 Msa0076640:intron 40.0%
GCAAGGACTTCTATTGTGAT+TGG - chr1_2:52826184-52826203 Msa0076640:intron 40.0%
AGGACTTCTATTGTGATTGG+AGG - chr1_2:52826187-52826206 Msa0076640:intron 40.0%
GGACTTCTATTGTGATTGGA+GGG - chr1_2:52826188-52826207 Msa0076640:intron 40.0%
!! TGTGATTGGAGGGTATCAAT+TGG - chr1_2:52826198-52826217 Msa0076640:intron 40.0%
AAAGCCGAAGCTAGTTGAGA+TGG + chr1_2:52816724-52816743 None:intergenic 45.0%
!! GGAGTTGTTTTATTCGGGGA+TGG - chr1_2:52816787-52816806 Msa0076640:CDS 45.0%
TTATTCGGGGATGGACCTTA+TGG - chr1_2:52816796-52816815 Msa0076640:CDS 45.0%
AAAGCAGAAGCTGTGCTAAC+AGG + chr1_2:52816883-52816902 None:intergenic 45.0%
ACAGCTTCTGCTTTCTCACA+AGG - chr1_2:52816889-52816908 Msa0076640:CDS 45.0%
CCTTCAGCCGAGTATTTCAT+CGG - chr1_2:52816916-52816935 Msa0076640:CDS 45.0%
TCTATAGACAACAACGGCGT+TGG - chr1_2:52816994-52817013 Msa0076640:CDS 45.0%
TAATGTGACTGGGACACGAT+TGG - chr1_2:52817161-52817180 Msa0076640:intron 45.0%
AATGTGACTGGGACACGATT+GGG - chr1_2:52817162-52817181 Msa0076640:intron 45.0%
!! TGTGATTGGAGGGTATCAGT+TGG - chr1_2:52817329-52817348 Msa0076640:intron 45.0%
! GGATTTAGCTCCTTGCTCTT+TGG - chr1_2:52817393-52817412 Msa0076640:intron 45.0%
AGTTTGTCGTCCAAAGAGCA+AGG + chr1_2:52817406-52817425 None:intergenic 45.0%
GTTTCTTCAGCTTCACACAG+AGG - chr1_2:52818478-52818497 Msa0076640:intron 45.0%
GAAGATAGTCACACGTGACT+CGG + chr1_2:52818661-52818680 None:intergenic 45.0%
! AAATTTGAGGCCCATCCTTG+GGG + chr1_2:52818740-52818759 None:intergenic 45.0%
GCCTAAAAGGCTAAACCAAG+AGG + chr1_2:52819446-52819465 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG + chr1_2:52819484-52819503 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG - chr1_2:52819482-52819501 Msa0076640:intron 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG - chr1_2:52819484-52819503 Msa0076640:intron 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG - chr1_2:52819485-52819504 Msa0076640:intron 45.0%
TCGACTCAGGGAATGAAAAG+AGG + chr1_2:52819643-52819662 None:intergenic 45.0%
CATAATGGTGATTGGCAACG+TGG + chr1_2:52819766-52819785 None:intergenic 45.0%
CGTTGCCAATCACCATTATG+AGG - chr1_2:52819766-52819785 Msa0076640:intron 45.0%
GGGGTTGTACACCATAGAAT+TGG - chr1_2:52820838-52820857 Msa0076640:intron 45.0%
TGAGAGTGGCACTAAGGAAT+TGG + chr1_2:52820931-52820950 None:intergenic 45.0%
!! AGATGTTGAGTTGGAGAGGA+TGG + chr1_2:52821018-52821037 None:intergenic 45.0%
ACAGGGAGAACAAGTGCTTT+GGG + chr1_2:52821152-52821171 None:intergenic 45.0%
! GTTGCGCTATCTTTTGTGAC+AGG + chr1_2:52821170-52821189 None:intergenic 45.0%
! AAGGTTTAGTGGGACTAGTG+GGG + chr1_2:52821228-52821247 None:intergenic 45.0%
! CAAGGTTTAGTGGGACTAGT+GGG + chr1_2:52821229-52821248 None:intergenic 45.0%
ACAAGGTTTAGTGGGACTAG+TGG + chr1_2:52821230-52821249 None:intergenic 45.0%
GATCGACGACAAGGTTTAGT+GGG + chr1_2:52821238-52821257 None:intergenic 45.0%
AGATCGACGACAAGGTTTAG+TGG + chr1_2:52821239-52821258 None:intergenic 45.0%
CTAAACCTTGTCGTCGATCT+TGG - chr1_2:52821239-52821258 Msa0076640:CDS 45.0%
ATCTTGGCGGCAAATTTCTC+TGG - chr1_2:52821255-52821274 Msa0076640:CDS 45.0%
TCTTGGCGGCAAATTTCTCT+GGG - chr1_2:52821256-52821275 Msa0076640:CDS 45.0%
! GGTATGTAGAGGAAGTGTAG+TGG + chr1_2:52821295-52821314 None:intergenic 45.0%
AGATTTGGCGAGGGAACATT+GGG + chr1_2:52821339-52821358 None:intergenic 45.0%
ATCACCGCAGCTATCAGATT+TGG + chr1_2:52821354-52821373 None:intergenic 45.0%
TCAACTAACGGTTTCAACCC+AGG - chr1_2:52821488-52821507 Msa0076640:CDS 45.0%
!! GCACCGACTTCATTATTACG+AGG - chr1_2:52821548-52821567 Msa0076640:CDS 45.0%
TTATTACGAGGACTTGCAGG+TGG - chr1_2:52821560-52821579 Msa0076640:CDS 45.0%
AAAGCTGAAGCTGTGCTAAC+AGG + chr1_2:52821806-52821825 None:intergenic 45.0%
CACAGCTTCAGCTTTCTTAC+AGG - chr1_2:52821811-52821830 Msa0076640:CDS 45.0%
CCGATGAAATACTCGACTGA+AGG + chr1_2:52821842-52821861 None:intergenic 45.0%
! GCTTTTACTGCAGAGCTTTG+GGG + chr1_2:52822342-52822361 None:intergenic 45.0%
GGACTTATTAGAGGTTCGGA+AGG + chr1_2:52822408-52822427 None:intergenic 45.0%
TGTAAGGATGGTAGTATCGC+GGG + chr1_2:52822438-52822457 None:intergenic 45.0%
CAATACTGACGGTGCTTGTA+AGG + chr1_2:52822454-52822473 None:intergenic 45.0%
TTGATCTTGACCCACCCAAT+CGG - chr1_2:52822471-52822490 Msa0076640:intron 45.0%
! GATGGAAGAAACCACCGATT+GGG + chr1_2:52822488-52822507 None:intergenic 45.0%
GGAATCATAATGTGGAGTGG+AGG + chr1_2:52822692-52822711 None:intergenic 45.0%
! AGGAAGCATAAGATGGGGAT+AGG + chr1_2:52822891-52822910 None:intergenic 45.0%
ATGCTGCACAAGATGAGACT+TGG + chr1_2:52822998-52823017 None:intergenic 45.0%
TCAGAGGATCATGACCATTG+CGG + chr1_2:52823123-52823142 None:intergenic 45.0%
AGAGATGAAGGTTGCAGATC+TGG + chr1_2:52823207-52823226 None:intergenic 45.0%
! GTCAAATGTGGATTGAGGAG+GGG + chr1_2:52823274-52823293 None:intergenic 45.0%
! GAGTCAAATGTGGATTGAGG+AGG + chr1_2:52823276-52823295 None:intergenic 45.0%
! CTGGAGTCAAATGTGGATTG+AGG + chr1_2:52823279-52823298 None:intergenic 45.0%
CTCAATCCACATTTGACTCC+AGG - chr1_2:52823277-52823296 Msa0076640:intron 45.0%
!! ATGGAAAAAGTGTTGGAGCC+TGG + chr1_2:52823298-52823317 None:intergenic 45.0%
GCTTTACTAAAGCCTTCCAG+AGG - chr1_2:52823360-52823379 Msa0076640:intron 45.0%
TCTTTGGGCTGAGGTTATGA+GGG + chr1_2:52823447-52823466 None:intergenic 45.0%
ATCAACTTCTCTTTGGGCTG+AGG + chr1_2:52823456-52823475 None:intergenic 45.0%
CGTGCATAATGAAACTGGGT+TGG + chr1_2:52823493-52823512 None:intergenic 45.0%
CAGTTTCCCAACTAACAGCA+TGG - chr1_2:52823573-52823592 Msa0076640:intron 45.0%
ATTTCGTCAATACACGCCCT+AGG - chr1_2:52823650-52823669 Msa0076640:intron 45.0%
CTAACCAACTCTCGTTTGCT+GGG + chr1_2:52823742-52823761 None:intergenic 45.0%
ACTAACCAACTCTCGTTTGC+TGG + chr1_2:52823743-52823762 None:intergenic 45.0%
AACACTTCGAGCTGGAAGAA+GGG + chr1_2:52824089-52824108 None:intergenic 45.0%
AAACACTTCGAGCTGGAAGA+AGG + chr1_2:52824090-52824109 None:intergenic 45.0%
AGTTGGAAAACACTTCGAGC+TGG + chr1_2:52824097-52824116 None:intergenic 45.0%
! TCAACGAGGCATTAGACAAG+GGG + chr1_2:52824197-52824216 None:intergenic 45.0%
! CTCAACGAGGCATTAGACAA+GGG + chr1_2:52824198-52824217 None:intergenic 45.0%
GAGTATTTCAGACCTCAACG+AGG + chr1_2:52824211-52824230 None:intergenic 45.0%
TAAATGGAATGGAGCGAGGA+CGG + chr1_2:52824233-52824252 None:intergenic 45.0%
AATCGGATGAGAGGAAGAAC+AGG + chr1_2:52824400-52824419 None:intergenic 45.0%
CATAGCATGAATCGGATGAG+AGG + chr1_2:52824409-52824428 None:intergenic 45.0%
AGTTGGCGCATAGCATGAAT+CGG + chr1_2:52824417-52824436 None:intergenic 45.0%
TATCGTTGTGGCTCAAGAGT+TGG + chr1_2:52824434-52824453 None:intergenic 45.0%
AGAGCCTGACAAACTAAGCA+TGG + chr1_2:52824653-52824672 None:intergenic 45.0%
GATTGTTGAAAGAAGCCAGC+TGG - chr1_2:52824724-52824743 Msa0076640:intron 45.0%
!! CGCTTTTTAGCATGAACCCT+TGG + chr1_2:52824774-52824793 None:intergenic 45.0%
TTGACTTCCTCGTCACCAAT+TGG - chr1_2:52824799-52824818 Msa0076640:intron 45.0%
GAGAAACTTGTGCTGCCAAT+TGG + chr1_2:52824817-52824836 None:intergenic 45.0%
AGGAGGTCGATGGTTTCAAA+CGG + chr1_2:52824875-52824894 None:intergenic 45.0%
TTCGAAACAGTGAAGGGGAA+TGG + chr1_2:52824969-52824988 None:intergenic 45.0%
! AGCGAAATGGTTAGCTGATG+GGG + chr1_2:52825058-52825077 None:intergenic 45.0%
! GAGCGAAATGGTTAGCTGAT+GGG + chr1_2:52825059-52825078 None:intergenic 45.0%
! AGAGCGAAATGGTTAGCTGA+TGG + chr1_2:52825060-52825079 None:intergenic 45.0%
TAAAAACGGAGGAGCTGATG+TGG + chr1_2:52825095-52825114 None:intergenic 45.0%
GTATCAGGGGCTTACAATCA+TGG + chr1_2:52825165-52825184 None:intergenic 45.0%
!! TCAGAAGAGGTTGGTATCAG+GGG + chr1_2:52825178-52825197 None:intergenic 45.0%
!! TGAGGGTATTCAGAAGAGGT+TGG + chr1_2:52825187-52825206 None:intergenic 45.0%
!! GGATTGAGGGTATTCAGAAG+AGG + chr1_2:52825191-52825210 None:intergenic 45.0%
TCATACAACGATATGCTGGC+TGG + chr1_2:52825333-52825352 None:intergenic 45.0%
ATGTTGCTCCCAGACAGTTT+AGG + chr1_2:52825383-52825402 None:intergenic 45.0%
CCCGTTGCTTATTTACCTGA+AGG + chr1_2:52825418-52825437 None:intergenic 45.0%
TCAGGTAAATAAGCAACGGG+TGG - chr1_2:52825418-52825437 Msa0076640:intron 45.0%
CCATTGGAGGTTTCAGTTTC+CGG + chr1_2:52825487-52825506 None:intergenic 45.0%
! CTGCACCTCCTTTCTTTTCA+TGG - chr1_2:52825661-52825680 Msa0076640:intron 45.0%
AGTGGCCATGAAAAGAAAGG+AGG + chr1_2:52825669-52825688 None:intergenic 45.0%
AATCAACCGTGGTTGTTAGC+GGG + chr1_2:52825711-52825730 None:intergenic 45.0%
GAATCAACCGTGGTTGTTAG+CGG + chr1_2:52825712-52825731 None:intergenic 45.0%
GGTTTGAGAAGGAAAGGGAA+TGG + chr1_2:52825818-52825837 None:intergenic 45.0%
TGCAAGAAACATAACGACGG+AGG - chr1_2:52825973-52825992 Msa0076640:intron 45.0%
!! TGCCTTGGATTTGTTAACGG+TGG - chr1_2:52826154-52826173 Msa0076640:intron 45.0%
CACCACCGTTAACAAATCCA+AGG + chr1_2:52826159-52826178 None:intergenic 45.0%
TTAACGGTGGTGAGAATGCA+AGG - chr1_2:52826167-52826186 Msa0076640:intron 45.0%
! TGATTTGGCTGCGTCTAGAT+TGG - chr1_2:52826240-52826259 Msa0076640:CDS 45.0%
GATTTGGCTGCGTCTAGATT+GGG - chr1_2:52826241-52826260 Msa0076640:CDS 45.0%
!!! TAACATTAATTTTTTTTTTT+AGG + chr1_2:52818021-52818040 None:intergenic 5.0%
!! AAAAATAAATAAAATGAATT+AGG + chr1_2:52818331-52818350 None:intergenic 5.0%
!!! AATCTATTTATTATTATTTT+TGG + chr1_2:52818538-52818557 None:intergenic 5.0%
!! TAAAAATAAAAAAAAATTTG+AGG + chr1_2:52818753-52818772 None:intergenic 5.0%
CCGATGAAATACTCGGCTGA+AGG + chr1_2:52816919-52816938 None:intergenic 50.0%
! ATAGACAACAACGGCGTTGG+TGG - chr1_2:52816997-52817016 Msa0076640:CDS 50.0%
!! GATTGGAGGGTATCAGTTGG+AGG - chr1_2:52817332-52817351 Msa0076640:intron 50.0%
!! AAAAGGCATCTAGGCAGTGG+AGG + chr1_2:52817451-52817470 None:intergenic 50.0%
!! GGAAAAAGGCATCTAGGCAG+TGG + chr1_2:52817454-52817473 None:intergenic 50.0%
! AGGGGGTGTGGCTGAAAAAT+AGG - chr1_2:52817582-52817601 Msa0076640:intron 50.0%
!! ACACGTGACTCGGTTCGATT+TGG + chr1_2:52818651-52818670 None:intergenic 50.0%
TGCAAACAGCTCAAACGAGC+TGG - chr1_2:52818709-52818728 Msa0076640:intron 50.0%
GCAAACAGCTCAAACGAGCT+GGG - chr1_2:52818710-52818729 Msa0076640:intron 50.0%
! AATTTGAGGCCCATCCTTGG+GGG + chr1_2:52818739-52818758 None:intergenic 50.0%
! TTCTGTGCTGCCAGCTTTGT+GGG - chr1_2:52819328-52819347 Msa0076640:intron 50.0%
!!! GGCTTTTGGTGGTTTTGTGC+AGG - chr1_2:52819407-52819426 Msa0076640:intron 50.0%
AGTTGGAGAGGATGGATCAG+AGG + chr1_2:52821010-52821029 None:intergenic 50.0%
GACAGGGAGAACAAGTGCTT+TGG + chr1_2:52821153-52821172 None:intergenic 50.0%
AACCTTGTCGTCGATCTTGG+CGG - chr1_2:52821242-52821261 Msa0076640:CDS 50.0%
CAGATTTGGCGAGGGAACAT+TGG + chr1_2:52821340-52821359 None:intergenic 50.0%
GCAGCTATCAGATTTGGCGA+GGG + chr1_2:52821348-52821367 None:intergenic 50.0%
CTCGCCAAATCTGATAGCTG+CGG - chr1_2:52821347-52821366 Msa0076640:intron 50.0%
CAACACTTGTGGCCTCATTC+CGG - chr1_2:52821403-52821422 Msa0076640:intron 50.0%
!! TGATGGTGTTGTCCGGAATG+AGG + chr1_2:52821418-52821437 None:intergenic 50.0%
!! CTGTGTGTGATGGTGTTGTC+CGG + chr1_2:52821425-52821444 None:intergenic 50.0%
!! TGCAGGTGGTGTTTCTGGTA+TGG - chr1_2:52821574-52821593 Msa0076640:CDS 50.0%
! GGTGTCATCATCTTCGGTGA+TGG - chr1_2:52821692-52821711 Msa0076640:CDS 50.0%
AGGAAAGCAATGCGAGTGGT+AGG + chr1_2:52822221-52822240 None:intergenic 50.0%
ACCCCATACGTTTCGCACAT+CGG - chr1_2:52822301-52822320 Msa0076640:intron 50.0%
TCCGATGTGCGAAACGTATG+GGG + chr1_2:52822305-52822324 None:intergenic 50.0%
CTCCGATGTGCGAAACGTAT+GGG + chr1_2:52822306-52822325 None:intergenic 50.0%
TCTCCGATGTGCGAAACGTA+TGG + chr1_2:52822307-52822326 None:intergenic 50.0%
!!! GAGCTTTGGGGAGTTTTGGA+AGG + chr1_2:52822330-52822349 None:intergenic 50.0%
!!! TGCAGAGCTTTGGGGAGTTT+TGG + chr1_2:52822334-52822353 None:intergenic 50.0%
GGGTGTGGAGGACTTATTAG+AGG + chr1_2:52822417-52822436 None:intergenic 50.0%
GTAAGGATGGTAGTATCGCG+GGG + chr1_2:52822437-52822456 None:intergenic 50.0%
ACTGACGGTGCTTGTAAGGA+TGG + chr1_2:52822450-52822469 None:intergenic 50.0%
! GAAGAAACCACCGATTGGGT+GGG + chr1_2:52822484-52822503 None:intergenic 50.0%
GGATGGAAGAAACCACCGAT+TGG + chr1_2:52822489-52822508 None:intergenic 50.0%
GACATTTGGAGGAAGTGGGA+TGG + chr1_2:52822506-52822525 None:intergenic 50.0%
CCGAGACATTTGGAGGAAGT+GGG + chr1_2:52822510-52822529 None:intergenic 50.0%
CCCACTTCCTCCAAATGTCT+CGG - chr1_2:52822507-52822526 Msa0076640:intron 50.0%
ATCTCAGCCGAGACATTTGG+AGG + chr1_2:52822517-52822536 None:intergenic 50.0%
GACATCTCAGCCGAGACATT+TGG + chr1_2:52822520-52822539 None:intergenic 50.0%
CCACTGCTTGTCACGCTATT+TGG + chr1_2:52822659-52822678 None:intergenic 50.0%
CCAAATAGCGTGACAAGCAG+TGG - chr1_2:52822656-52822675 Msa0076640:intron 50.0%
GGCACTTTGGTTGTGTGTAG+TGG + chr1_2:52822793-52822812 None:intergenic 50.0%
!! TACACACAACCAAAGTGCCG+TGG - chr1_2:52822794-52822813 Msa0076640:intron 50.0%
!!! AACCAAAGTGCCGTGGCTTT+TGG - chr1_2:52822801-52822820 Msa0076640:intron 50.0%
TTGGAGCCTGGAGTCAAATG+TGG + chr1_2:52823286-52823305 None:intergenic 50.0%
TTCCAGAGGCTTGAATCCGA+CGG - chr1_2:52823374-52823393 Msa0076640:intron 50.0%
CTTTGGGCTGAGGTTATGAG+GGG + chr1_2:52823446-52823465 None:intergenic 50.0%
CTCTTTGGGCTGAGGTTATG+AGG + chr1_2:52823448-52823467 None:intergenic 50.0%
!! TCGTTGGTGGTCTAGGCTTA+AGG + chr1_2:52823538-52823557 None:intergenic 50.0%
!! CCAAAAGTCGTTGGTGGTCT+AGG + chr1_2:52823545-52823564 None:intergenic 50.0%
! CCTAGACCACCAACGACTTT+TGG - chr1_2:52823542-52823561 Msa0076640:intron 50.0%
CACCCCATATGAACTGTCGT+TGG - chr1_2:52823618-52823637 Msa0076640:intron 50.0%
!! TGAATGGTAAGCTTGCTGCG+TGG + chr1_2:52823769-52823788 None:intergenic 50.0%
TTTGGCGCTCTTCCAAGCAA+CGG - chr1_2:52823821-52823840 Msa0076640:intron 50.0%
! TATTTGGGTGTGCCGTTGCT+TGG + chr1_2:52823836-52823855 None:intergenic 50.0%
GCTGCACTTATGTGGCTTCA+AGG + chr1_2:52823879-52823898 None:intergenic 50.0%
ACACTTCGAGCTGGAAGAAG+GGG + chr1_2:52824088-52824107 None:intergenic 50.0%
! CCTCAACGAGGCATTAGACA+AGG + chr1_2:52824199-52824218 None:intergenic 50.0%
CCTTGTCTAATGCCTCGTTG+AGG - chr1_2:52824196-52824215 Msa0076640:intron 50.0%
TGGAGGACCTTGAAGGAGAT+TGG + chr1_2:52824316-52824335 None:intergenic 50.0%
ATTGTGTCACCGCATCAGAC+TGG + chr1_2:52824487-52824506 None:intergenic 50.0%
GAAGCCAGCTGGAAAACCAT+CGG - chr1_2:52824735-52824754 Msa0076640:intron 50.0%
AAGCCAGCTGGAAAACCATC+GGG - chr1_2:52824736-52824755 Msa0076640:intron 50.0%
! ACGATATGCTGGCTGGTTGT+TGG + chr1_2:52825326-52825345 None:intergenic 50.0%
GGTAAATAAGCAACGGGTGG+TGG - chr1_2:52825421-52825440 Msa0076640:intron 50.0%
TTGGAGGTTTCAGTTTCCGG+AGG + chr1_2:52825484-52825503 None:intergenic 50.0%
CCGGAAACTGAAACCTCCAA+TGG - chr1_2:52825484-52825503 Msa0076640:intron 50.0%
CCTTGTGCAATGACCATTGG+AGG + chr1_2:52825500-52825519 None:intergenic 50.0%
CCTCCAATGGTCATTGCACA+AGG - chr1_2:52825497-52825516 Msa0076640:intron 50.0%
! GAGCCTTGTGCAATGACCAT+TGG + chr1_2:52825503-52825522 None:intergenic 50.0%
! TTGGTTCTCGGTTCACTTGG+CGG + chr1_2:52825569-52825588 None:intergenic 50.0%
!! CTGTTGGTTCTCGGTTCACT+TGG + chr1_2:52825572-52825591 None:intergenic 50.0%
AAATCCCCCGCTAACAACCA+CGG - chr1_2:52825702-52825721 Msa0076640:intron 50.0%
ATCAACCGTGGTTGTTAGCG+GGG + chr1_2:52825710-52825729 None:intergenic 50.0%
! GATTCTTTGGGAGGAGCTGA+AGG + chr1_2:52825751-52825770 None:intergenic 50.0%
AATTTGCCAGGGACGCCATT+GGG - chr1_2:52826034-52826053 Msa0076640:CDS 50.0%
TGCCACAATTCAAGGGGGTG+TGG - chr1_2:52817570-52817589 Msa0076640:intron 55.0%
AGCCACACCCCCTTGAATTG+TGG + chr1_2:52817575-52817594 None:intergenic 55.0%
ATATGCAGGCCCGACTCTGA+GGG - chr1_2:52818684-52818703 Msa0076640:intron 55.0%
TGTTTGCACCCCCTCAGAGT+CGG + chr1_2:52818697-52818716 None:intergenic 55.0%
CTTCTGTGCTGCCAGCTTTG+TGG - chr1_2:52819327-52819346 Msa0076640:intron 55.0%
! CTTTGTGCGCGCATGGCTTT+TGG - chr1_2:52819393-52819412 Msa0076640:intron 55.0%
GAATTCGGAGGCTCGACTCA+GGG + chr1_2:52819655-52819674 None:intergenic 55.0%
AGAATTCGGAGGCTCGACTC+AGG + chr1_2:52819656-52819675 None:intergenic 55.0%
AGTCGAGCCTCCGAATTCTC+AGG - chr1_2:52819657-52819676 Msa0076640:intron 55.0%
GTCGAGCCTCCGAATTCTCA+GGG - chr1_2:52819658-52819677 Msa0076640:intron 55.0%
AGCCTCCGAATTCTCAGGGA+CGG - chr1_2:52819662-52819681 Msa0076640:intron 55.0%
! GTGGGACTAGTGGGGTTCTT+TGG + chr1_2:52821220-52821239 None:intergenic 55.0%
CCTCTACATACCACCCTGCA+CGG - chr1_2:52821303-52821322 Msa0076640:CDS 55.0%
TTTGGCGAGGGAACATTGGG+CGG + chr1_2:52821336-52821355 None:intergenic 55.0%
CGCAGCTATCAGATTTGGCG+AGG + chr1_2:52821349-52821368 None:intergenic 55.0%
!! GTGTTGTTGCAGCCGGGTTT+TGG + chr1_2:52821389-52821408 None:intergenic 55.0%
! CCACAAGTGTTGTTGCAGCC+GGG + chr1_2:52821395-52821414 None:intergenic 55.0%
! GCCACAAGTGTTGTTGCAGC+CGG + chr1_2:52821396-52821415 None:intergenic 55.0%
ACGAGTAGCGCTGTGTGTGA+TGG + chr1_2:52821435-52821454 None:intergenic 55.0%
ATCACACACAGCGCTACTCG+TGG - chr1_2:52821434-52821453 Msa0076640:CDS 55.0%
GGACTTGCAGGTGGTGTTTC+TGG - chr1_2:52821569-52821588 Msa0076640:CDS 55.0%
!! GGTGGTGTTTCTGGTATGGC+CGG - chr1_2:52821578-52821597 Msa0076640:CDS 55.0%
!! GTTTCTGGTATGGCCGGTCT+TGG - chr1_2:52821584-52821603 Msa0076640:CDS 55.0%
GTTAGCTGCTGATCAAGCGG+AGG + chr1_2:52822031-52822050 None:intergenic 55.0%
GGGAAGGAAAGCAATGCGAG+TGG + chr1_2:52822225-52822244 None:intergenic 55.0%
TTCGGAAGGCGAGTGGTTAG+CGG + chr1_2:52822394-52822413 None:intergenic 55.0%
TTAGAGGTTCGGAAGGCGAG+TGG + chr1_2:52822401-52822420 None:intergenic 55.0%
ATCTTGACCCACCCAATCGG+TGG - chr1_2:52822474-52822493 Msa0076640:intron 55.0%
! GGAAGAAACCACCGATTGGG+TGG + chr1_2:52822485-52822504 None:intergenic 55.0%
GCCGAGACATTTGGAGGAAG+TGG + chr1_2:52822511-52822530 None:intergenic 55.0%
TGTGGAGTGGAGGGACTTCT+GGG + chr1_2:52822682-52822701 None:intergenic 55.0%
ATGTGGAGTGGAGGGACTTC+TGG + chr1_2:52822683-52822702 None:intergenic 55.0%
GTCCAAAAGCCACGGCACTT+TGG + chr1_2:52822806-52822825 None:intergenic 55.0%
GAGGGACTGTCCAAAAGCCA+CGG + chr1_2:52822814-52822833 None:intergenic 55.0%
ATTCTCATCCGGCACCGCAA+TGG - chr1_2:52823106-52823125 Msa0076640:intron 55.0%
GATCATGACCATTGCGGTGC+CGG + chr1_2:52823117-52823136 None:intergenic 55.0%
GTCGGATTCAAGCCTCTGGA+AGG + chr1_2:52823375-52823394 None:intergenic 55.0%
AACCGTCGGATTCAAGCCTC+TGG + chr1_2:52823379-52823398 None:intergenic 55.0%
CTCTCCCAGCAAACGAGAGT+TGG - chr1_2:52823735-52823754 Msa0076640:intron 55.0%
CAGCAGCTGCTGCACTTATG+TGG + chr1_2:52823887-52823906 None:intergenic 55.0%
AGCCAGCTGGAAAACCATCG+GGG - chr1_2:52824737-52824756 Msa0076640:intron 55.0%
!! ATGAACCCTTGGAAGGCACC+TGG + chr1_2:52824763-52824782 None:intergenic 55.0%
!! TGTGCTGCCAATTGGTGACG+AGG + chr1_2:52824809-52824828 None:intergenic 55.0%
GGAGTGGAAATGGAACACGC+TGG + chr1_2:52825250-52825269 None:intergenic 55.0%
TGTGCGCGTTCTCGGTAGAT+TGG + chr1_2:52825457-52825476 None:intergenic 55.0%
TGGTTCTCGGTTCACTTGGC+GGG + chr1_2:52825568-52825587 None:intergenic 55.0%
TCAACCGTGGTTGTTAGCGG+GGG + chr1_2:52825709-52825728 None:intergenic 55.0%
CAATTTGCCAGGGACGCCAT+TGG - chr1_2:52826033-52826052 Msa0076640:CDS 55.0%
CAGAGTCGGGCCTGCATATG+TGG + chr1_2:52818683-52818702 None:intergenic 60.0%
CATATGCAGGCCCGACTCTG+AGG - chr1_2:52818683-52818702 Msa0076640:intron 60.0%
TATGCAGGCCCGACTCTGAG+GGG - chr1_2:52818685-52818704 Msa0076640:intron 60.0%
GTTTGCACCCCCTCAGAGTC+GGG + chr1_2:52818696-52818715 None:intergenic 60.0%
! CTGTCAGCTTTGTGCGCGCA+TGG - chr1_2:52819386-52819405 Msa0076640:intron 60.0%
! TGTGCGCGCATGGCTTTTGG+TGG - chr1_2:52819396-52819415 Msa0076640:intron 60.0%
CAGGGCCGTCCCTGAGAATT+CGG + chr1_2:52819670-52819689 None:intergenic 60.0%
TGCCGCCAAGATCGACGACA+AGG + chr1_2:52821247-52821266 None:intergenic 60.0%
CCGTGCAGGGTGGTATGTAG+AGG + chr1_2:52821306-52821325 None:intergenic 60.0%
CCCGGCTGCAACAACACTTG+TGG - chr1_2:52821392-52821411 Msa0076640:intron 60.0%
TCGGAAGGCGAGTGGTTAGC+GGG + chr1_2:52822393-52822412 None:intergenic 60.0%
GATGGTAGTATCGCGGGGTG+TGG + chr1_2:52822432-52822451 None:intergenic 60.0%
! GCGGTGCCGGATGAGAATGA+TGG + chr1_2:52823104-52823123 None:intergenic 60.0%
TCGAGCTGGAAGAAGGGGTC+CGG + chr1_2:52824083-52824102 None:intergenic 60.0%
GAGGCGTATGTGCGCGTTCT+CGG + chr1_2:52825465-52825484 None:intergenic 60.0%
AGAACGCGCACATACGCCTC+CGG - chr1_2:52825465-52825484 Msa0076640:intron 60.0%
TGGCGGGGACCTATCTATCG+AGG + chr1_2:52825552-52825571 None:intergenic 60.0%
GGTTCTCGGTTCACTTGGCG+GGG + chr1_2:52825567-52825586 None:intergenic 60.0%
! ATGCAGGCCCGACTCTGAGG+GGG - chr1_2:52818686-52818705 Msa0076640:intron 65.0%
TTGAGGCCCATCCTTGGGGG+AGG + chr1_2:52818736-52818755 None:intergenic 65.0%
GGCCGTCCCTGAGAATTCGG+AGG + chr1_2:52819667-52819686 None:intergenic 65.0%
CGAGGGAACATTGGGCGGAG+GGG + chr1_2:52821331-52821350 None:intergenic 65.0%
GCGAGGGAACATTGGGCGGA+GGG + chr1_2:52821332-52821351 None:intergenic 65.0%
TGAAAGGGAGGGGCGAAGCC+CGG - chr1_2:52821967-52821986 Msa0076640:intron 65.0%
CGGAAGGCGAGTGGTTAGCG+GGG + chr1_2:52822392-52822411 None:intergenic 65.0%
GGTAGTATCGCGGGGTGTGG+AGG + chr1_2:52822429-52822448 None:intergenic 65.0%
! GGCCCCGATGGTTTTCCAGC+TGG + chr1_2:52824742-52824761 None:intergenic 65.0%
GCTGGAAAACCATCGGGGCC+AGG - chr1_2:52824742-52824761 Msa0076640:intron 65.0%
GTAGGCACAGCCGCACCCAA+TGG + chr1_2:52826052-52826071 None:intergenic 65.0%
AACGAGCTGGGCCTCCCCCA+AGG - chr1_2:52818722-52818741 Msa0076640:intron 70.0%
AGCTGGGCCTCCCCCAAGGA+TGG - chr1_2:52818726-52818745 Msa0076640:intron 70.0%
GCTGGGCCTCCCCCAAGGAT+GGG - chr1_2:52818727-52818746 Msa0076640:intron 70.0%
GGCGAGGGAACATTGGGCGG+AGG + chr1_2:52821333-52821352 None:intergenic 70.0%
!! TGGAAGGCACCTGGCCCCGA+TGG + chr1_2:52824754-52824773 None:intergenic 70.0%
TCGGGGCCAGGTGCCTTCCA+AGG - chr1_2:52824754-52824773 Msa0076640:intron 70.0%
CGGGGCCAGGTGCCTTCCAA+GGG - chr1_2:52824755-52824774 Msa0076640:intron 70.0%
GCCAGGGACGCCATTGGGTG+CGG - chr1_2:52826039-52826058 Msa0076640:CDS 70.0%
GCCGCACCCAATGGCGTCCC+TGG + chr1_2:52826043-52826062 None:intergenic 75.0%
!!! CGGAGGGGCACCGTGCAGGG+TGG + chr1_2:52821316-52821335 None:intergenic 80.0%
!!! GGGCGGAGGGGCACCGTGCA+GGG + chr1_2:52821319-52821338 None:intergenic 80.0%
!!! TGGGCGGAGGGGCACCGTGC+AGG + chr1_2:52821320-52821339 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52816688 52826330 52816688 ID=Msa0076640;Name=Msa0076640
chr1_2 mRNA 52816688 52826330 52816688 ID=Msa0076640-mRNA-1;Parent=Msa0076640;Name=Msa0076640-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0|0|1|0|0|6|0|553
chr1_2 exon 52826201 52826330 52826201 ID=Msa0076640-mRNA-1:exon:16347;Parent=Msa0076640-mRNA-1
chr1_2 exon 52825988 52826107 52825988 ID=Msa0076640-mRNA-1:exon:16346;Parent=Msa0076640-mRNA-1
chr1_2 exon 52825712 52825939 52825712 ID=Msa0076640-mRNA-1:exon:16345;Parent=Msa0076640-mRNA-1
chr1_2 exon 52821428 52821955 52821428 ID=Msa0076640-mRNA-1:exon:16344;Parent=Msa0076640-mRNA-1
chr1_2 exon 52821126 52821328 52821126 ID=Msa0076640-mRNA-1:exon:16343;Parent=Msa0076640-mRNA-1
chr1_2 exon 52816688 52817140 52816688 ID=Msa0076640-mRNA-1:exon:16342;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52826201 52826330 52826201 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52825988 52826107 52825988 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52825712 52825939 52825712 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52821428 52821955 52821428 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52821126 52821328 52821126 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
chr1_2 CDS 52816688 52817140 52816688 ID=Msa0076640-mRNA-1:cds;Parent=Msa0076640-mRNA-1
Gene Sequence

>Msa0076640

ATGGCTGGTCTTGGAAGAACCAAAATTGCTCTTCCATCTCAACTAGCTTCGGCTTTTAGCTTCGATAGAAAATTCGCTATTTGTCTTTCCTCTTCAAAGGGAGTTGTTTTATTCGGGGATGGACCTTATGGTCAGCCTTCAGCCGAGTATTTCATCGGCGTGAAAACAATAAAAATCGATGAAAAAGTTGTTTCACTTAACTCAAGTTTGTTTTCTATAGACAACAACGGCGTTGGTGGAACAAAGATTATTACAGACGCTTTCGTGAAAGCGTCTGCTGCAAGAAACATAAAGAGGGTGGATTCGGTTGCGCCTTTTGAATTTTGTTACACTAATGTGACTGGGACACGATTGGGTGCAGCTGTGCCTACTATTGAGCTCTTTTTGCAAAATGAAAATGTGGTTTGGAGGATATTTGGTGCAAATTCAATGGTGAATATAAATGATGAGGTTTTGTGTCTTGGATTTGTGAATGGTGCCATGGCTAATACCAACTTCCAACACTTCATTTCCATTCTTTTATTGCTCTTCATTACACCAACTTTCTCTCAACAATCATTCAGACCCAAAGCACTTGTTCTCCCTGTCACAAAAGATAGCGCAACAACACTACAATACTTGGCTCAAATTAACCAAAGAACCCCACTAGTCCCACTAAACCTTGTCGTCGATCTTGGCGGCAAATTTCTCTGGGTCGACTGTGAAAACCACTACACTTCCTCTACATACCACCCTGCACGGTGCCCCTCCGCCCAATGTTCCCTCGCCAAATCTGATAGCTGCGGTGATTGTTTCTCATCACCAAAACCCGGCTGCAACAACACTTGTGGCCTCATTCCGGACAACACCATCACACACAGCGCTACTCGTGGCGAACTAGCTGAAGACGTTTTATCCATCCAATCAACTAACGGTTTCAACCCAGGACAAAATGTAGTTGTTTCACGCTTTCTATTTTCATGTGCACCGACTTCATTATTACGAGGACTTGCAGGTGGTGTTTCTGATGGTGTCATCATCTTCGGTGATGGTCCTTACAGTTTTCTTGCTGACAACGCTTCTCTCCCTAACGTTGTATTTGATTCAAAATCACTCACATACACGCCACTTTTAATCAATCCTGTTAGCACAGCTTCAGCTTTCTTACAGGGAGAGCCTTCAGTCGAGTATTTCATCGGAGTGAAAACAATAAAAATTGATGGAAAAGTGTTAGGTGGAACAAAGATTAGTACGGTTGATCCTTACACGGTTTTAGAAGCTTCTATTTATAAAGCAGTCACAGACGCTTTTGTGAAAGCGTCTGTTGCAAGAAACATAACGACGGAGGATTCATCTCCGCCTTTTGAATTTTGTTATAGTTTTGACAATTTGCCAGGGACGCCATTGGGTGCGGCTGTGCCTACAATTGAGCTTGTTTTACAGAACAATGTGATTTGGAGCATGTTTGGTGCAAATTCAATGGTGAATATAAATGATGAGGTTTTGTGCCTTGGATTTGTTAACGGTGGTGAGAATGCAAGGACTTCTATTGTGATTGGAGGGTATCAATTGGAGAATAATGTTCTGCAATTTGATTTGGCTGCGTCTAGATTGGGTTTTAGCAACACGATCTTTGCACGTCAAACTGATTGTTTTAGATTCAACTTCACCTCCACTGCCTAG
Protein sequence

>Msa0076640

MAGLGRTKIALPSQLASAFSFDRKFAICLSSSKGVVLFGDGPYGQPSAEYFIGVKTIKIDEKVVSLNSSLFSIDNNGVGGTKIITDAFVKASAARNIKRVDSVAPFEFCYTNVTGTRLGAAVPTIELFLQNENVVWRIFGANSMVNINDEVLCLGFVNGAMANTNFQHFISILLLLFITPTFSQQSFRPKALVLPVTKDSATTLQYLAQINQRTPLVPLNLVVDLGGKFLWVDCENHYTSSTYHPARCPSAQCSLAKSDSCGDCFSSPKPGCNNTCGLIPDNTITHSATRGELAEDVLSIQSTNGFNPGQNVVVSRFLFSCAPTSLLRGLAGGVSDGVIIFGDGPYSFLADNASLPNVVFDSKSLTYTPLLINPVSTASAFLQGEPSVEYFIGVKTIKIDGKVLGGTKISTVDPYTVLEASIYKAVTDAFVKASVARNITTEDSSPPFEFCYSFDNLPGTPLGAAVPTIELVLQNNVIWSMFGANSMVNINDEVLCLGFVNGGENARTSIVIGGYQLENNVLQFDLAASRLGFSNTIFARQTDCFRFNFTSTA*