Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931420 | XP_003602042.2 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931420 | sp|Q70DU8|AL3H1_ARATH | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076640 | Msa0931420 | 0.802871 | 4.567333e-49 | -8.615850e-47 |
| Msa0129640 | Msa0931420 | 0.809115 | 2.218784e-50 | -8.615850e-47 |
| Msa0374290 | Msa0931420 | 0.918145 | 2.234188e-86 | -8.615850e-47 |
| Msa0469720 | Msa0931420 | 0.990111 | 4.157947e-181 | -8.615850e-47 |
| Msa0332360 | Msa0931420 | 0.802044 | 6.762945e-49 | -8.615850e-47 |
| Msa0515540 | Msa0931420 | 0.955338 | 3.813861e-113 | -8.615850e-47 |
| Msa0515590 | Msa0931420 | 0.952837 | 1.021073e-110 | -8.615850e-47 |
| Msa0863940 | Msa0931420 | 0.802014 | 6.857285e-49 | -8.615850e-47 |
| Msa0931420 | Msa1156490 | 0.804541 | 2.056110e-49 | -8.615850e-47 |
| Msa0931420 | Msa1344330 | 0.811510 | 6.754121e-51 | -8.615850e-47 |
| Msa0931420 | Msa1401110 | 0.805697 | 1.177969e-49 | -8.615850e-47 |
| Msa0931420 | Msa1412410 | 0.804498 | 2.098802e-49 | -8.615850e-47 |
| Msa0931420 | Msa1427860 | 0.802902 | 4.501107e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931420 | MtrunA17_Chr3g0124811 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 984 |
| Msa0931420 | MtrunA17_Chr8g0384741 | 66.122 | 490 | 166 | 0 | 1 | 490 | 52 | 541 | 0.0 | 706 |
| Msa0931420 | MtrunA17_Chr1g0159811 | 78.897 | 417 | 88 | 0 | 8 | 424 | 6 | 422 | 0.0 | 699 |
| Msa0931420 | MtrunA17_Chr8g0372381 | 47.548 | 469 | 246 | 0 | 15 | 483 | 6 | 474 | 8.52e-166 | 477 |
| Msa0931420 | MtrunA17_Chr2g0328781 | 46.764 | 479 | 252 | 1 | 13 | 488 | 15 | 493 | 1.34e-159 | 462 |
| Msa0931420 | MtrunA17_Chr4g0032441 | 50.881 | 454 | 220 | 1 | 22 | 472 | 9 | 462 | 3.30e-146 | 427 |
| Msa0931420 | MtrunA17_Chr3g0129271 | 44.444 | 189 | 102 | 1 | 185 | 370 | 31 | 219 | 6.41e-51 | 174 |
| Msa0931420 | MtrunA17_Chr3g0118121 | 29.954 | 434 | 285 | 9 | 27 | 447 | 58 | 485 | 6.23e-40 | 150 |
| Msa0931420 | MtrunA17_Chr4g0059521 | 29.017 | 417 | 282 | 9 | 40 | 447 | 74 | 485 | 2.61e-39 | 149 |
| Msa0931420 | MtrunA17_Chr2g0294411 | 24.777 | 448 | 307 | 8 | 36 | 467 | 106 | 539 | 4.22e-39 | 149 |
| Msa0931420 | MtrunA17_Chr3g0118081 | 29.263 | 434 | 288 | 10 | 27 | 447 | 88 | 515 | 8.54e-38 | 145 |
| Msa0931420 | MtrunA17_Chr2g0310091 | 27.874 | 348 | 242 | 8 | 114 | 455 | 193 | 537 | 1.09e-32 | 130 |
| Msa0931420 | MtrunA17_Chr8g0365221 | 26.790 | 433 | 299 | 11 | 26 | 448 | 108 | 532 | 5.22e-30 | 123 |
| Msa0931420 | MtrunA17_Chr4g0059221 | 26.991 | 452 | 298 | 13 | 14 | 448 | 99 | 535 | 1.11e-29 | 122 |
| Msa0931420 | MtrunA17_Chr8g0390651 | 28.070 | 342 | 230 | 9 | 117 | 448 | 159 | 494 | 1.64e-27 | 115 |
| Msa0931420 | MtrunA17_Chr3g0117861 | 27.212 | 452 | 297 | 14 | 14 | 448 | 97 | 533 | 4.75e-27 | 114 |
| Msa0931420 | MtrunA17_Chr4g0074171 | 28.743 | 334 | 229 | 7 | 118 | 448 | 158 | 485 | 4.50e-26 | 110 |
| Msa0931420 | MtrunA17_Chr8g0390631 | 29.275 | 345 | 222 | 11 | 117 | 448 | 150 | 485 | 1.17e-25 | 109 |
| Msa0931420 | MtrunA17_Chr6g0485301 | 28.319 | 339 | 233 | 8 | 117 | 448 | 158 | 493 | 4.56e-25 | 108 |
| Msa0931420 | MtrunA17_Chr6g0485311 | 27.515 | 338 | 235 | 8 | 117 | 447 | 156 | 490 | 5.60e-24 | 104 |
| Msa0931420 | MtrunA17_Chr1g0149961 | 25.000 | 460 | 318 | 12 | 5 | 448 | 37 | 485 | 1.78e-23 | 103 |
| Msa0931420 | MtrunA17_Chr4g0009161 | 42.202 | 109 | 59 | 2 | 185 | 289 | 116 | 224 | 3.36e-20 | 89.4 |
| Msa0931420 | MtrunA17_Chr1g0159821 | 52.778 | 72 | 34 | 0 | 10 | 81 | 8 | 79 | 1.72e-19 | 84.3 |
| Msa0931420 | MtrunA17_Chr2g0279751 | 28.710 | 310 | 196 | 10 | 115 | 408 | 147 | 447 | 2.10e-18 | 87.8 |
| Msa0931420 | MtrunA17_Chr4g0049641 | 27.036 | 307 | 205 | 8 | 115 | 408 | 174 | 474 | 2.39e-18 | 87.8 |
| Msa0931420 | MtrunA17_Chr2g0300801 | 25.685 | 292 | 194 | 12 | 118 | 393 | 155 | 439 | 3.55e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931420 | AT1G44170.1 | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Msa0931420 | AT1G44170.2 | 68.058 | 479 | 153 | 0 | 10 | 488 | 4 | 482 | 0.0 | 704 |
| Msa0931420 | AT4G34240.1 | 64.644 | 478 | 169 | 0 | 13 | 490 | 70 | 547 | 0.0 | 647 |
| Msa0931420 | AT4G34240.4 | 64.644 | 478 | 169 | 0 | 13 | 490 | 55 | 532 | 0.0 | 647 |
| Msa0931420 | AT1G44170.3 | 70.560 | 411 | 121 | 0 | 78 | 488 | 9 | 419 | 0.0 | 634 |
| Msa0931420 | AT4G34240.3 | 67.574 | 404 | 131 | 0 | 87 | 490 | 2 | 405 | 0.0 | 569 |
| Msa0931420 | AT4G36250.1 | 47.609 | 460 | 238 | 1 | 16 | 472 | 6 | 465 | 1.23e-162 | 469 |
| Msa0931420 | AT4G34240.2 | 66.667 | 321 | 107 | 0 | 13 | 333 | 70 | 390 | 1.03e-150 | 436 |
| Msa0931420 | AT3G66658.1 | 27.146 | 431 | 296 | 6 | 36 | 452 | 106 | 532 | 8.79e-44 | 162 |
| Msa0931420 | AT3G66658.2 | 27.361 | 413 | 282 | 6 | 36 | 434 | 106 | 514 | 2.61e-43 | 162 |
| Msa0931420 | AT1G74920.1 | 27.571 | 457 | 304 | 12 | 15 | 449 | 37 | 488 | 4.33e-42 | 157 |
| Msa0931420 | AT1G74920.2 | 28.810 | 420 | 284 | 10 | 40 | 449 | 69 | 483 | 9.40e-42 | 156 |
| Msa0931420 | AT3G48170.1 | 27.338 | 417 | 289 | 9 | 40 | 447 | 74 | 485 | 1.27e-36 | 142 |
| Msa0931420 | AT1G79440.1 | 28.824 | 340 | 233 | 8 | 114 | 447 | 184 | 520 | 1.37e-33 | 133 |
| Msa0931420 | AT1G23800.1 | 27.455 | 448 | 301 | 13 | 14 | 448 | 89 | 525 | 1.57e-33 | 133 |
| Msa0931420 | AT3G48000.1 | 26.549 | 452 | 300 | 14 | 14 | 448 | 93 | 529 | 1.22e-28 | 119 |
| Msa0931420 | AT3G24503.1 | 27.729 | 339 | 235 | 7 | 117 | 448 | 157 | 492 | 2.63e-27 | 115 |
| Msa0931420 | AT2G24270.3 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.19e-25 | 107 |
| Msa0931420 | AT2G24270.1 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.19e-25 | 107 |
| Msa0931420 | AT2G24270.4 | 28.144 | 334 | 231 | 7 | 118 | 448 | 158 | 485 | 9.37e-25 | 107 |
| Msa0931420 | AT2G24270.2 | 28.707 | 317 | 217 | 7 | 118 | 431 | 198 | 508 | 1.15e-24 | 107 |
| Msa0931420 | AT2G14170.2 | 27.378 | 347 | 228 | 12 | 117 | 447 | 139 | 477 | 5.21e-18 | 87.0 |
| Msa0931420 | AT2G14170.1 | 27.378 | 347 | 228 | 12 | 117 | 447 | 248 | 586 | 5.52e-18 | 87.4 |
| Msa0931420 | AT1G23800.2 | 30.078 | 256 | 155 | 9 | 14 | 253 | 89 | 336 | 3.90e-17 | 84.0 |
| Msa0931420 | AT2G14170.3 | 27.273 | 308 | 203 | 10 | 115 | 408 | 246 | 546 | 1.10e-16 | 83.2 |
| Msa0931420 | AT1G54100.2 | 21.453 | 289 | 210 | 8 | 118 | 393 | 154 | 438 | 1.58e-13 | 73.2 |
| Msa0931420 | AT1G54100.1 | 21.453 | 289 | 210 | 8 | 118 | 393 | 154 | 438 | 1.58e-13 | 73.2 |
Find 129 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCCAATTCTGTCTTTA+AGG | 0.114075 | 6_2:-80876198 | None:intergenic |
| GCTATGTTACTATTGATTTC+TGG | 0.128525 | 6_2:-80873016 | None:intergenic |
| GGGAAAATTTCATACCAATT+TGG | 0.160031 | 6_2:-80876104 | None:intergenic |
| GTTTCTGGCAAGGTTGTTTA+TGG | 0.170486 | 6_2:+80876317 | Msa0931420:CDS |
| TCACTGCTGGCGAACTTATT+AGG | 0.192129 | 6_2:+80875281 | Msa0931420:CDS |
| GGAAAATTTCATACCAATTT+GGG | 0.208738 | 6_2:-80876103 | None:intergenic |
| ACAGAATTGGAAAGCTTCTT+TGG | 0.227872 | 6_2:+80876206 | Msa0931420:CDS |
| TTGGACGACGAGAAGGTTTC+TGG | 0.237632 | 6_2:+80876302 | Msa0931420:CDS |
| TGGTTCATACTTTGCCATTT+GGG | 0.248058 | 6_2:+80876910 | Msa0931420:CDS |
| GTGGTTCATACTTTGCCATT+TGG | 0.266390 | 6_2:+80876909 | Msa0931420:CDS |
| CTATGTTACTATTGATTTCT+GGG | 0.296959 | 6_2:-80873015 | None:intergenic |
| TTTGTTGTTATAACGTAATC+AGG | 0.304335 | 6_2:-80876070 | None:intergenic |
| CACTGCTGGCGAACTTATTA+GGG | 0.310991 | 6_2:+80875282 | Msa0931420:CDS |
| GATAAATCATTGGATTCTAT+TGG | 0.315485 | 6_2:-80876236 | None:intergenic |
| TGATTTCTGGGATAATAATA+AGG | 0.317495 | 6_2:-80873003 | None:intergenic |
| ACAGCTAGACGGATAATTTC+AGG | 0.342418 | 6_2:+80876010 | Msa0931420:CDS |
| ACACCTTACACCAGTCGTTC+TGG | 0.352826 | 6_2:+80875627 | Msa0931420:CDS |
| CTAGTCGCCGGCGATGTTAC+TGG | 0.358446 | 6_2:+80877086 | Msa0931420:CDS |
| GGATTCAAATGTCAATTTAG+AGG | 0.363970 | 6_2:+80875678 | Msa0931420:CDS |
| TTTATTCTTACCGTGATAAT+GGG | 0.376274 | 6_2:-80876521 | None:intergenic |
| CTGAGGGTGAGCTTTAATTC+TGG | 0.376691 | 6_2:+80873122 | Msa0931420:CDS |
| TTCTAACCACTTTGCTCGCT+TGG | 0.378374 | 6_2:+80876271 | Msa0931420:CDS |
| TGATGCCTTAAAGACAGAAT+TGG | 0.379258 | 6_2:+80876193 | Msa0931420:CDS |
| AACACTACACCAAGTGGTTC+AGG | 0.380052 | 6_2:-80874775 | None:intergenic |
| TCCAGCCTCGTCTTCACTGC+TGG | 0.400434 | 6_2:+80875268 | Msa0931420:CDS |
| TTCTGCTTTGTATCAGTGTA+AGG | 0.401680 | 6_2:-80877050 | None:intergenic |
| GGAGTTGGTGACAGTGGAAT+GGG | 0.406759 | 6_2:+80876933 | Msa0931420:CDS |
| TTGAAAACAAATTAAAGCTT+AGG | 0.408744 | 6_2:-80877135 | None:intergenic |
| TACAATAAAATCAGAACAAA+TGG | 0.409251 | 6_2:-80877185 | None:intergenic |
| GAAGATGGTTGATGAACAAC+AGG | 0.411988 | 6_2:+80873193 | Msa0931420:CDS |
| GGGAGTTGGTGACAGTGGAA+TGG | 0.415308 | 6_2:+80876932 | Msa0931420:CDS |
| CTGTCCCTTGATCCAGTTGT+TGG | 0.425314 | 6_2:+80875197 | Msa0931420:CDS |
| CACAATGCGCGATAAATCAT+TGG | 0.432655 | 6_2:-80876246 | None:intergenic |
| TACAAATGACAACAAGTTCA+AGG | 0.442505 | 6_2:+80876729 | Msa0931420:CDS |
| GCTGCTATAGCTCCAACAAC+TGG | 0.444023 | 6_2:-80875209 | None:intergenic |
| ACACCAGTCGTTCTGGAGCT+TGG | 0.446970 | 6_2:+80875634 | Msa0931420:CDS |
| ATAATGAGTGAGGAGATCTT+TGG | 0.458834 | 6_2:+80876488 | Msa0931420:CDS |
| TGCTCGCTTGGTAAAGATGT+TGG | 0.468945 | 6_2:+80876283 | Msa0931420:CDS |
| TAGCAATAGTATAAAATGTC+GGG | 0.472828 | 6_2:+80873035 | Msa0931420:exon |
| TTTGTGAAGAATGTTTCTGC+TGG | 0.473206 | 6_2:+80876757 | Msa0931420:CDS |
| GGTACTATTTCAGCTGAAGA+AGG | 0.475298 | 6_2:-80874754 | None:intergenic |
| ACAATGGATGGCCCCAGAAA+AGG | 0.476780 | 6_2:+80874596 | Msa0931420:CDS |
| ACATTTGAATCCACAACAGT+TGG | 0.479478 | 6_2:-80875667 | None:intergenic |
| GGTTGTTTATGGAGGTGAAA+AGG | 0.487907 | 6_2:+80876328 | Msa0931420:CDS |
| CTGCATTGTTGCAACAAAAG+TGG | 0.494247 | 6_2:+80875360 | Msa0931420:CDS |
| CTTGGAACAGGTGAACAAGC+TGG | 0.495328 | 6_2:+80876651 | Msa0931420:intron |
| CGGAGAAGCGGCGTCGTCGT+TGG | 0.495817 | 6_2:+80873091 | Msa0931420:CDS |
| TAGCTCCAACAACTGGATCA+AGG | 0.496212 | 6_2:-80875202 | None:intergenic |
| TGGAGCGTCTAATACAATAG+TGG | 0.501825 | 6_2:-80876453 | None:intergenic |
| GGTTCATACTTTGCCATTTG+GGG | 0.508394 | 6_2:+80876911 | Msa0931420:CDS |
| GACGGATAATTTCAGGAAAG+TGG | 0.508972 | 6_2:+80876017 | Msa0931420:CDS |
| CAGAATTAAAGCTCACCCTC+AGG | 0.511369 | 6_2:-80873121 | None:intergenic |
| TTACGGGTGATGCATCGATA+AGG | 0.514070 | 6_2:+80877021 | Msa0931420:CDS |
| GCTCCAGAACGACTGGTGTA+AGG | 0.516414 | 6_2:-80875630 | None:intergenic |
| TGAAGATCAGTCACAGAAGA+AGG | 0.516470 | 6_2:+80873058 | Msa0931420:CDS |
| GTAAATAAATATGCAGCAAG+TGG | 0.517979 | 6_2:-80876709 | None:intergenic |
| GCCAGCAGTGAAGACGAGGC+TGG | 0.518366 | 6_2:-80875269 | None:intergenic |
| AACGTAATCAGGAGAAATGC+AGG | 0.519634 | 6_2:-80876059 | None:intergenic |
| AGGAAAATCTCCAACTGTTG+TGG | 0.520349 | 6_2:+80875657 | Msa0931420:CDS |
| ATCTATAAGAGTTGTGGAGG+GGG | 0.520366 | 6_2:+80875322 | Msa0931420:CDS |
| CAGAAGAAGGTGGTGTTTGA+CGG | 0.522711 | 6_2:+80873071 | Msa0931420:CDS |
| AGCGGCGTCGTCGTTGGTGA+AGG | 0.523107 | 6_2:+80873097 | Msa0931420:CDS |
| CCTCCAAGCTCCAGAACGAC+TGG | 0.525093 | 6_2:-80875637 | None:intergenic |
| TTTGTGAGTAAAAGCGTCAA+AGG | 0.526185 | 6_2:-80876976 | None:intergenic |
| GGAAAGTGGTGCTGTAACAA+TGG | 0.528505 | 6_2:+80876031 | Msa0931420:CDS |
| CTCATCTATAAGAGTTGTGG+AGG | 0.535901 | 6_2:+80875319 | Msa0931420:CDS |
| CCAGTCGTTCTGGAGCTTGG+AGG | 0.536552 | 6_2:+80875637 | Msa0931420:CDS |
| ATAGCAATAGTATAAAATGT+CGG | 0.538437 | 6_2:+80873034 | Msa0931420:exon |
| GTTGTTGGAGCTATAGCAGC+CGG | 0.541671 | 6_2:+80875212 | Msa0931420:CDS |
| TGCTTTGTATCAGTGTAAGG+CGG | 0.541950 | 6_2:-80877047 | None:intergenic |
| GTAAGACACGAAGTTATGAA+TGG | 0.543765 | 6_2:+80873144 | Msa0931420:CDS |
| AGCTCCAACAACTGGATCAA+GGG | 0.544547 | 6_2:-80875201 | None:intergenic |
| TCTGGCAAGGTTGTTTATGG+AGG | 0.544720 | 6_2:+80876320 | Msa0931420:CDS |
| TTATGAATGGAGAGTATCGC+AGG | 0.547189 | 6_2:+80873157 | Msa0931420:CDS |
| TACAAAGCAGAAATTGATGA+AGG | 0.548509 | 6_2:+80877061 | Msa0931420:CDS |
| GTGAAGAATGTTTCTGCTGG+GGG | 0.549524 | 6_2:+80876760 | Msa0931420:CDS |
| TGCATTGTTGCAACAAAAGT+GGG | 0.550398 | 6_2:+80875361 | Msa0931420:CDS |
| TAGTGTTAGTCATCTCTGCT+TGG | 0.552108 | 6_2:+80874791 | Msa0931420:CDS |
| TAACTCATCTATAAGAGTTG+TGG | 0.553446 | 6_2:+80875316 | Msa0931420:CDS |
| CGACGAGAAGGTTTCTGGCA+AGG | 0.555363 | 6_2:+80876307 | Msa0931420:CDS |
| TTTCAAGCGGTGGTTTAGCA+AGG | 0.558890 | 6_2:-80873244 | None:intergenic |
| CTCATTATCAGAGAATCTTG+TGG | 0.559354 | 6_2:-80876473 | None:intergenic |
| TTGTGAAGAATGTTTCTGCT+GGG | 0.560631 | 6_2:+80876758 | Msa0931420:CDS |
| TCCATTGCTTCCCATTATCA+CGG | 0.561243 | 6_2:+80876511 | Msa0931420:CDS |
| TTGATGAAGGCTCTAGTCGC+CGG | 0.564772 | 6_2:+80877074 | Msa0931420:CDS |
| GAGGCTGGAGCAATTTCTGA+TGG | 0.566074 | 6_2:-80875254 | None:intergenic |
| CGTCGTTGGTGAAGGACCTG+AGG | 0.569144 | 6_2:+80873105 | Msa0931420:CDS |
| GAAAATTTCATACCAATTTG+GGG | 0.571184 | 6_2:-80876102 | None:intergenic |
| ACAAATGGTACAGCACTAGC+AGG | 0.573164 | 6_2:-80877170 | None:intergenic |
| CGCTGAAGGAATTGAAACAA+TGG | 0.574396 | 6_2:+80874580 | Msa0931420:CDS |
| GGAGCGTCTAATACAATAGT+GGG | 0.580198 | 6_2:-80876452 | None:intergenic |
| GTGGAATGGGTGCATACCAT+GGG | 0.581183 | 6_2:+80876946 | Msa0931420:CDS |
| GCTTTGTATCAGTGTAAGGC+GGG | 0.584751 | 6_2:-80877046 | None:intergenic |
| GTTCATACTTTGCCATTTGG+GGG | 0.589580 | 6_2:+80876912 | Msa0931420:CDS |
| AAAGATGTTGGACGACGAGA+AGG | 0.593143 | 6_2:+80876295 | Msa0931420:CDS |
| GAAGGAATTGAAACAATGGA+TGG | 0.595708 | 6_2:+80874584 | Msa0931420:CDS |
| ACCGTGATAATGGGAAGCAA+TGG | 0.596325 | 6_2:-80876512 | None:intergenic |
| GGTACAGCACTAGCAGGTAT+CGG | 0.599656 | 6_2:-80877164 | None:intergenic |
| CAGGTAATGGAAAAGTGGGA+CGG | 0.603039 | 6_2:+80875581 | Msa0931420:intron |
| CTCATGTGAAGTCACGCTGA+AGG | 0.604871 | 6_2:+80874566 | Msa0931420:CDS |
| TCATCTATAAGAGTTGTGGA+GGG | 0.608439 | 6_2:+80875320 | Msa0931420:CDS |
| TTTACTAGGTTACAGCTAGA+CGG | 0.610366 | 6_2:+80875999 | Msa0931420:intron |
| AGCTTCGATTTGATCAACGC+AGG | 0.611901 | 6_2:+80876679 | Msa0931420:CDS |
| GGTGGTGTTTGACGGAGAAG+CGG | 0.613325 | 6_2:+80873079 | Msa0931420:CDS |
| TAGACAACAGTTTCAAGCGG+TGG | 0.617970 | 6_2:-80873254 | None:intergenic |
| GTCGTTGGTGAAGGACCTGA+GGG | 0.624859 | 6_2:+80873106 | Msa0931420:CDS |
| GAACTTATTAGGGAGGTACA+TGG | 0.626641 | 6_2:+80875292 | Msa0931420:CDS |
| AAAATTTCATACCAATTTGG+GGG | 0.628857 | 6_2:-80876101 | None:intergenic |
| GTTCGCCAGCAGTGAAGACG+AGG | 0.630975 | 6_2:-80875273 | None:intergenic |
| AACAACACCAGTAACATCGC+CGG | 0.631565 | 6_2:-80877093 | None:intergenic |
| CATCTATAAGAGTTGTGGAG+GGG | 0.632599 | 6_2:+80875321 | Msa0931420:CDS |
| GAAATAGTACCTGAACCACT+TGG | 0.636077 | 6_2:+80874766 | Msa0931420:CDS |
| AGATTCTCTGATAATGAGTG+AGG | 0.639886 | 6_2:+80876478 | Msa0931420:CDS |
| ATGACTAACACTACACCAAG+TGG | 0.646296 | 6_2:-80874781 | None:intergenic |
| GAGATAAACTGAGAGCAAAG+TGG | 0.647026 | 6_2:-80872981 | None:intergenic |
| CAATGCAGTAGTTTCATCAA+CGG | 0.649582 | 6_2:-80875345 | None:intergenic |
| TGTGAAGAATGTTTCTGCTG+GGG | 0.658052 | 6_2:+80876759 | Msa0931420:CDS |
| TGCTGGCGAACTTATTAGGG+AGG | 0.664145 | 6_2:+80875285 | Msa0931420:CDS |
| AAAAGTGGGACGGATAGTGA+TGG | 0.666797 | 6_2:+80875591 | Msa0931420:CDS |
| AGTGGGACGGATAGTGATGG+CGG | 0.669702 | 6_2:+80875594 | Msa0931420:CDS |
| AGTGGAATGGGTGCATACCA+TGG | 0.672625 | 6_2:+80876945 | Msa0931420:CDS |
| TCTTTACCAAGCGAGCAAAG+TGG | 0.678259 | 6_2:-80876277 | None:intergenic |
| GCTTGAAACTGTTGTCTACG+AGG | 0.679853 | 6_2:+80873259 | Msa0931420:CDS |
| TATAGCAGCCGGAAACGCCG+TGG | 0.683688 | 6_2:+80875223 | Msa0931420:CDS |
| TCGTAGACAACAGTTTCAAG+CGG | 0.691579 | 6_2:-80873257 | None:intergenic |
| CGTCAAAGGAGAATTTCCCA+TGG | 0.693948 | 6_2:-80876962 | None:intergenic |
| ATGCATCACCCGTAAAACCA+CGG | 0.701105 | 6_2:-80877013 | None:intergenic |
| AGATCAGTCACAGAAGAAGG+TGG | 0.702169 | 6_2:+80873061 | Msa0931420:CDS |
| CAACGTAACACAGTCAACAG+AGG | 0.713171 | 6_2:+80872851 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATATATATATGATTTTTA+TGG | + | chr6_2:80873308-80873327 | Msa0931420:intron | 10.0% |
| !!! | TTTTATGTTTTCTTTAATAA+AGG | + | chr6_2:80873542-80873561 | Msa0931420:intron | 10.0% |
| !!! | ATTCAACTTAAAATATTTTT+GGG | + | chr6_2:80874310-80874329 | Msa0931420:intron | 10.0% |
| !!! | TAAATCTAAATCAATTTGTT+AGG | + | chr6_2:80873809-80873828 | Msa0931420:intron | 15.0% |
| !!! | GATTCAACTTAAAATATTTT+TGG | + | chr6_2:80874309-80874328 | Msa0931420:intron | 15.0% |
| !! | TAGATTATTAAAGAAACTAA+AGG | - | chr6_2:80875136-80875155 | None:intergenic | 15.0% |
| !!! | TAAAGTTAAATTGTTTTCAA+TGG | - | chr6_2:80875777-80875796 | None:intergenic | 15.0% |
| !!! | TAAATTAATTTGTGTTTACT+AGG | + | chr6_2:80875985-80876004 | Msa0931420:intron | 15.0% |
| !! | ATAGCAATAGTATAAAATGT+CGG | + | chr6_2:80873034-80873053 | Msa0931420:exon | 20.0% |
| !!! | ATAAACATCATAAGTTTTCA+AGG | + | chr6_2:80873419-80873438 | Msa0931420:intron | 20.0% |
| !!! | TATTCTTGAGATTTTTCATT+TGG | + | chr6_2:80873448-80873467 | Msa0931420:intron | 20.0% |
| !!! | TATGTTTTCTTTAATAAAGG+AGG | + | chr6_2:80873545-80873564 | Msa0931420:intron | 20.0% |
| !!! | AAAGCATTTTTCTTTTTGAA+GGG | - | chr6_2:80873591-80873610 | None:intergenic | 20.0% |
| !!! | AAAAGCATTTTTCTTTTTGA+AGG | - | chr6_2:80873592-80873611 | None:intergenic | 20.0% |
| !!! | TTCACCTTCTTTTTTTTTTA+CGG | + | chr6_2:80873610-80873629 | Msa0931420:intron | 20.0% |
| !!! | TTCTGGAAAATATAAGTAAA+AGG | + | chr6_2:80873931-80873950 | Msa0931420:intron | 20.0% |
| !!! | TAAAAGGTGTATGTAAAATA+AGG | + | chr6_2:80873947-80873966 | Msa0931420:intron | 20.0% |
| !!! | AAAAGGTGTATGTAAAATAA+GGG | + | chr6_2:80873948-80873967 | Msa0931420:intron | 20.0% |
| !! | AAAAATAAACTTTGATTGAC+TGG | + | chr6_2:80873982-80874001 | Msa0931420:intron | 20.0% |
| !! | TTTAAAAATTTAGTATCCCT+TGG | + | chr6_2:80874333-80874352 | Msa0931420:intron | 20.0% |
| !!! | TATTTTGAATTTATGGAAAG+CGG | - | chr6_2:80874379-80874398 | None:intergenic | 20.0% |
| !!! | GTTACTCTATTTTGAATTTA+TGG | - | chr6_2:80874386-80874405 | None:intergenic | 20.0% |
| !! | TACAAATGTTACAAAATGTT+CGG | - | chr6_2:80874408-80874427 | None:intergenic | 20.0% |
| !!! | GTAACTAAACAAACATATTT+TGG | + | chr6_2:80874425-80874444 | Msa0931420:intron | 20.0% |
| !! | AGTTCCTTTAATAATATTTC+AGG | + | chr6_2:80874708-80874727 | Msa0931420:intron | 20.0% |
| !! | TTAGCCTGAAATATTATTAA+AGG | - | chr6_2:80874715-80874734 | None:intergenic | 20.0% |
| !! | AAGATATCGTGAAAAATTTA+TGG | - | chr6_2:80874964-80874983 | None:intergenic | 20.0% |
| !!! | TTTACCTTTTGTTATACAAA+TGG | + | chr6_2:80875005-80875024 | Msa0931420:intron | 20.0% |
| !!! | ATGGTTATGAATTGTTATTT+TGG | + | chr6_2:80875437-80875456 | Msa0931420:intron | 20.0% |
| !! | AAAATTCACAATACCAATAA+TGG | - | chr6_2:80875484-80875503 | None:intergenic | 20.0% |
| !!! | TAAGTAATTACTTGATTTTC+AGG | + | chr6_2:80875562-80875581 | Msa0931420:intron | 20.0% |
| !!! | ATTAAATTTTTCATCCAATC+AGG | + | chr6_2:80875876-80875895 | Msa0931420:intron | 20.0% |
| !! | TTAAGTCAATAATGAGTTAA+GGG | - | chr6_2:80875968-80875987 | None:intergenic | 20.0% |
| !! | TTTAAGTCAATAATGAGTTA+AGG | - | chr6_2:80875969-80875988 | None:intergenic | 20.0% |
| !!! | TTGTATCCAATTTAAAACAA+TGG | + | chr6_2:80876600-80876619 | Msa0931420:intron | 20.0% |
| !!! | TGTATCCAATTTAAAACAAT+GGG | + | chr6_2:80876601-80876620 | Msa0931420:intron | 20.0% |
| !! | TTGAAAACAAATTAAAGCTT+AGG | - | chr6_2:80877138-80877157 | None:intergenic | 20.0% |
| !! | TACAATAAAATCAGAACAAA+TGG | - | chr6_2:80877188-80877207 | None:intergenic | 20.0% |
| !!! | TAAAATAAACGTTTTAAGAG+AGG | + | chr6_2:80877246-80877265 | Msa0931420:three_prime_UTR | 20.0% |
| !!! | TGATTTCTGGGATAATAATA+AGG | - | chr6_2:80873006-80873025 | None:intergenic | 25.0% |
| !!! | CTATGTTACTATTGATTTCT+GGG | - | chr6_2:80873018-80873037 | None:intergenic | 25.0% |
| ! | TAGCAATAGTATAAAATGTC+GGG | + | chr6_2:80873035-80873054 | Msa0931420:exon | 25.0% |
| ! | AGCAACTTAAACATGAAATT+AGG | - | chr6_2:80873287-80873306 | None:intergenic | 25.0% |
| ! | AATCAAAGTAATTGTATCGT+CGG | - | chr6_2:80873499-80873518 | None:intergenic | 25.0% |
| ! | TAAAATATTGACGTCATACA+AGG | - | chr6_2:80873527-80873546 | None:intergenic | 25.0% |
| ! | TGTTCCGTAAAAAAAAAAGA+AGG | - | chr6_2:80873617-80873636 | None:intergenic | 25.0% |
| !!! | CATAATAAATTGGTTTGGTT+TGG | + | chr6_2:80873772-80873791 | Msa0931420:intron | 25.0% |
| ! | CACTATATATCGAAAACTAT+TGG | - | chr6_2:80873862-80873881 | None:intergenic | 25.0% |
| !!! | TGTTTTTTACAATGAGTAGT+TGG | + | chr6_2:80874018-80874037 | Msa0931420:intron | 25.0% |
| ! | TATACTATTCTCAACTACAT+TGG | + | chr6_2:80874287-80874306 | Msa0931420:intron | 25.0% |
| !!! | ATGTACTTTTTTTTGCAGAT+TGG | + | chr6_2:80874531-80874550 | Msa0931420:intron | 25.0% |
| ! | TAAGCCATTTGTATAACAAA+AGG | - | chr6_2:80875012-80875031 | None:intergenic | 25.0% |
| !! | ACAAAATTTTGTATACAGGT+TGG | + | chr6_2:80875384-80875403 | Msa0931420:intron | 25.0% |
| !!! | ATTACTTGATTTTCAGGTAA+TGG | + | chr6_2:80875568-80875587 | Msa0931420:intron | 25.0% |
| !!! | CAATTTAGAGGTATTGATTA+AGG | + | chr6_2:80875690-80875709 | Msa0931420:intron | 25.0% |
| ! | TTAATAAGTCAATCCAAACA+TGG | - | chr6_2:80875716-80875735 | None:intergenic | 25.0% |
| ! | TGACTGGAAAATAAAAAAGA+AGG | - | chr6_2:80875915-80875934 | None:intergenic | 25.0% |
| ! | TAAGTCAATAATGAGTTAAG+GGG | - | chr6_2:80875967-80875986 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTATAACGTAATC+AGG | - | chr6_2:80876073-80876092 | None:intergenic | 25.0% |
| ! | AAAATTTCATACCAATTTGG+GGG | - | chr6_2:80876104-80876123 | None:intergenic | 25.0% |
| ! | GAAAATTTCATACCAATTTG+GGG | - | chr6_2:80876105-80876124 | None:intergenic | 25.0% |
| ! | GGAAAATTTCATACCAATTT+GGG | - | chr6_2:80876106-80876125 | None:intergenic | 25.0% |
| ! | GATAAATCATTGGATTCTAT+TGG | - | chr6_2:80876239-80876258 | None:intergenic | 25.0% |
| !! | TTTTATATACTGCAATGCAA+TGG | + | chr6_2:80876396-80876415 | Msa0931420:intron | 25.0% |
| ! | TTTATTCTTACCGTGATAAT+GGG | - | chr6_2:80876524-80876543 | None:intergenic | 25.0% |
| !! | TTTTATTCTTACCGTGATAA+TGG | - | chr6_2:80876525-80876544 | None:intergenic | 25.0% |
| !! | GTATCCAATTTAAAACAATG+GGG | + | chr6_2:80876602-80876621 | Msa0931420:intron | 25.0% |
| ! | ATAATACTTTCTTTCTTGCT+TGG | + | chr6_2:80876633-80876652 | Msa0931420:intron | 25.0% |
| ! | ATAAGTAACATTGCATGATA+AGG | - | chr6_2:80876863-80876882 | None:intergenic | 25.0% |
| !!! | TGTGCTTTTTAAAAGCAAAT+TGG | + | chr6_2:80877271-80877290 | Msa0931420:three_prime_UTR | 25.0% |
| !! | GCTATGTTACTATTGATTTC+TGG | - | chr6_2:80873019-80873038 | None:intergenic | 30.0% |
| ! | ATTTGGAGTCACTATTATGA+TGG | + | chr6_2:80873465-80873484 | Msa0931420:intron | 30.0% |
| AATCACGTAAATACAAGTCA+CGG | + | chr6_2:80873675-80873694 | Msa0931420:intron | 30.0% | |
| ACTTCCTAGGCATAATAAAT+TGG | + | chr6_2:80873762-80873781 | Msa0931420:intron | 30.0% | |
| CAAACCAATTTATTATGCCT+AGG | - | chr6_2:80873769-80873788 | None:intergenic | 30.0% | |
| CTAGGCATAATAAATTGGTT+TGG | + | chr6_2:80873767-80873786 | Msa0931420:intron | 30.0% | |
| AATCCTAATAGCCATAACTT+TGG | + | chr6_2:80874061-80874080 | Msa0931420:intron | 30.0% | |
| TATTGTGTCAACCAAAGTTA+TGG | - | chr6_2:80874075-80874094 | None:intergenic | 30.0% | |
| TTAGTAAAAAGGAAAGAGGT+TGG | - | chr6_2:80874235-80874254 | None:intergenic | 30.0% | |
| CCATTTAGTAAAAAGGAAAG+AGG | - | chr6_2:80874239-80874258 | None:intergenic | 30.0% | |
| ! | CCTCTTTCCTTTTTACTAAA+TGG | + | chr6_2:80874236-80874255 | Msa0931420:intron | 30.0% |
| ATTGAGTGAAATGAAACCAA+GGG | - | chr6_2:80874352-80874371 | None:intergenic | 30.0% | |
| AATACAACTAAGCAATTGAC+AGG | + | chr6_2:80874451-80874470 | Msa0931420:intron | 30.0% | |
| ! | GGTAAAATAAACCTTTTCTG+GGG | - | chr6_2:80874610-80874629 | None:intergenic | 30.0% |
| ! | GGGTAAAATAAACCTTTTCT+GGG | - | chr6_2:80874611-80874630 | None:intergenic | 30.0% |
| TAACTCAAATACAACCAACA+AGG | - | chr6_2:80875103-80875122 | None:intergenic | 30.0% | |
| TAACTCATCTATAAGAGTTG+TGG | + | chr6_2:80875316-80875335 | Msa0931420:CDS | 30.0% | |
| ! | TGGGACAAAATTTTGTATAC+AGG | + | chr6_2:80875380-80875399 | Msa0931420:CDS | 30.0% |
| !!! | ATTTTCAGGTAATGGAAAAG+TGG | + | chr6_2:80875576-80875595 | Msa0931420:intron | 30.0% |
| !!! | TTTTCAGGTAATGGAAAAGT+GGG | + | chr6_2:80875577-80875596 | Msa0931420:intron | 30.0% |
| GGATTCAAATGTCAATTTAG+AGG | + | chr6_2:80875678-80875697 | Msa0931420:CDS | 30.0% | |
| TCATATTGCTTTCATGTGTA+AGG | - | chr6_2:80875823-80875842 | None:intergenic | 30.0% | |
| TGATATAACTAGTTACTGAC+TGG | - | chr6_2:80875931-80875950 | None:intergenic | 30.0% | |
| GGGAAAATTTCATACCAATT+TGG | - | chr6_2:80876107-80876126 | None:intergenic | 30.0% | |
| ! | TTTAGAACTCTTAACAACGA+GGG | - | chr6_2:80876127-80876146 | None:intergenic | 30.0% |
| ! | ATTTAGAACTCTTAACAACG+AGG | - | chr6_2:80876128-80876147 | None:intergenic | 30.0% |
| GTCTTTGTGTATCTAATGTT+TGG | + | chr6_2:80876152-80876171 | Msa0931420:intron | 30.0% | |
| CCTACTAAACTTGAATTAAG+AGG | - | chr6_2:80876376-80876395 | None:intergenic | 30.0% | |
| ! | CCTCTTAATTCAAGTTTAGT+AGG | + | chr6_2:80876373-80876392 | Msa0931420:intron | 30.0% |
| GTAAATAAATATGCAGCAAG+TGG | - | chr6_2:80876712-80876731 | None:intergenic | 30.0% | |
| TACAAATGACAACAAGTTCA+AGG | + | chr6_2:80876729-80876748 | Msa0931420:CDS | 30.0% | |
| GATAAGGATATATGCATTCA+TGG | - | chr6_2:80876847-80876866 | None:intergenic | 30.0% | |
| TACAAAGCAGAAATTGATGA+AGG | + | chr6_2:80877061-80877080 | Msa0931420:CDS | 30.0% | |
| GTAAGACACGAAGTTATGAA+TGG | + | chr6_2:80873144-80873163 | Msa0931420:CDS | 35.0% | |
| AAGTAATTGTATCGTCGGAA+CGG | - | chr6_2:80873494-80873513 | None:intergenic | 35.0% | |
| AGGATGCTTCTTAAAAGACA+GGG | + | chr6_2:80873703-80873722 | Msa0931420:intron | 35.0% | |
| !! | GAAGGCGCTAATTTATTCAA+TGG | + | chr6_2:80873730-80873749 | Msa0931420:intron | 35.0% |
| ATGGAGGAATAAAACTTCCT+AGG | + | chr6_2:80873749-80873768 | Msa0931420:intron | 35.0% | |
| ! | TTGTGAGAACTAAAGTGTTC+TGG | + | chr6_2:80873914-80873933 | Msa0931420:intron | 35.0% |
| CAACCAAAGTTATGGCTATT+AGG | - | chr6_2:80874067-80874086 | None:intergenic | 35.0% | |
| GTAACTTGAAAATGCTATGC+AGG | - | chr6_2:80874147-80874166 | None:intergenic | 35.0% | |
| ! | TAATTTTAAGCACGGTCAAG+AGG | - | chr6_2:80874202-80874221 | None:intergenic | 35.0% |
| ACGGAGTCCATTTAGTAAAA+AGG | - | chr6_2:80874246-80874265 | None:intergenic | 35.0% | |
| CATTGAGTGAAATGAAACCA+AGG | - | chr6_2:80874353-80874372 | None:intergenic | 35.0% | |
| GAAGGAATTGAAACAATGGA+TGG | + | chr6_2:80874584-80874603 | Msa0931420:CDS | 35.0% | |
| ! | GGGGTAAAATAAACCTTTTC+TGG | - | chr6_2:80874612-80874631 | None:intergenic | 35.0% |
| CTGAAGGTCAACTTACAAAA+TGG | - | chr6_2:80874823-80874842 | None:intergenic | 35.0% | |
| CTAAACAGTCTCAAGAATGT+TGG | - | chr6_2:80874884-80874903 | None:intergenic | 35.0% | |
| TTAACAGAACAGAACCTTGT+TGG | + | chr6_2:80875086-80875105 | Msa0931420:intron | 35.0% | |
| !!! | TTCTGATGGTTTTAGAACCA+CGG | - | chr6_2:80875243-80875262 | None:intergenic | 35.0% |
| TCATCTATAAGAGTTGTGGA+GGG | + | chr6_2:80875320-80875339 | Msa0931420:CDS | 35.0% | |
| CAATGCAGTAGTTTCATCAA+CGG | - | chr6_2:80875348-80875367 | None:intergenic | 35.0% | |
| TGCATTGTTGCAACAAAAGT+GGG | + | chr6_2:80875361-80875380 | Msa0931420:CDS | 35.0% | |
| !! | TATCACCAGTCTGTTTTTCT+TGG | + | chr6_2:80875414-80875433 | Msa0931420:intron | 35.0% |
| !!! | TTTTGGTTTTGTCGTGCAAT+TGG | + | chr6_2:80875454-80875473 | Msa0931420:intron | 35.0% |
| TGCAATTGGTATGCCATTAT+TGG | + | chr6_2:80875468-80875487 | Msa0931420:intron | 35.0% | |
| ACATTTGAATCCACAACAGT+TGG | - | chr6_2:80875670-80875689 | None:intergenic | 35.0% | |
| !! | GTATTGATTAAGGCCATGTT+TGG | + | chr6_2:80875700-80875719 | Msa0931420:intron | 35.0% |
| ! | ATTGTTTTCAATGGCTATCC+AGG | - | chr6_2:80875768-80875787 | None:intergenic | 35.0% |
| TCAATAATGAGTTAAGGGGA+AGG | - | chr6_2:80875963-80875982 | None:intergenic | 35.0% | |
| TTTACTAGGTTACAGCTAGA+CGG | + | chr6_2:80875999-80876018 | Msa0931420:intron | 35.0% | |
| TGATGCCTTAAAGACAGAAT+TGG | + | chr6_2:80876193-80876212 | Msa0931420:CDS | 35.0% | |
| GCTTTCCAATTCTGTCTTTA+AGG | - | chr6_2:80876201-80876220 | None:intergenic | 35.0% | |
| ACAGAATTGGAAAGCTTCTT+TGG | + | chr6_2:80876206-80876225 | Msa0931420:CDS | 35.0% | |
| TCTTGACACAAGCAAATTAC+AGG | + | chr6_2:80876420-80876439 | Msa0931420:intron | 35.0% | |
| CTCATTATCAGAGAATCTTG+TGG | - | chr6_2:80876476-80876495 | None:intergenic | 35.0% | |
| ! | AGATTCTCTGATAATGAGTG+AGG | + | chr6_2:80876478-80876497 | Msa0931420:CDS | 35.0% |
| ATAATGAGTGAGGAGATCTT+TGG | + | chr6_2:80876488-80876507 | Msa0931420:CDS | 35.0% | |
| !!! | GATGCCCCATTGTTTTAAAT+TGG | - | chr6_2:80876609-80876628 | None:intergenic | 35.0% |
| ! | TTTGTGAAGAATGTTTCTGC+TGG | + | chr6_2:80876757-80876776 | Msa0931420:CDS | 35.0% |
| ! | TTGTGAAGAATGTTTCTGCT+GGG | + | chr6_2:80876758-80876777 | Msa0931420:CDS | 35.0% |
| GGATATATGCATTCATGGAA+AGG | - | chr6_2:80876842-80876861 | None:intergenic | 35.0% | |
| ! | TGGTTCATACTTTGCCATTT+GGG | + | chr6_2:80876910-80876929 | Msa0931420:CDS | 35.0% |
| !! | TTTGTGAGTAAAAGCGTCAA+AGG | - | chr6_2:80876979-80876998 | None:intergenic | 35.0% |
| ! | TGACGCTTTTACTCACAAAA+AGG | + | chr6_2:80876980-80876999 | Msa0931420:CDS | 35.0% |
| !! | AGTTCTTTACCGTGGTTTTA+CGG | + | chr6_2:80877004-80877023 | Msa0931420:CDS | 35.0% |
| TTCTGCTTTGTATCAGTGTA+AGG | - | chr6_2:80877053-80877072 | None:intergenic | 35.0% | |
| GAGAGCAGAGTGGAAATATT+TGG | - | chr6_2:80872934-80872953 | None:intergenic | 40.0% | |
| GAGATAAACTGAGAGCAAAG+TGG | - | chr6_2:80872984-80873003 | None:intergenic | 40.0% | |
| TGAAGATCAGTCACAGAAGA+AGG | + | chr6_2:80873058-80873077 | Msa0931420:CDS | 40.0% | |
| !! | TTATGAATGGAGAGTATCGC+AGG | + | chr6_2:80873157-80873176 | Msa0931420:CDS | 40.0% |
| !! | GGTGAAAGCTCTTTTGAAGA+TGG | + | chr6_2:80873178-80873197 | Msa0931420:CDS | 40.0% |
| !! | GAAGATGGTTGATGAACAAC+AGG | + | chr6_2:80873193-80873212 | Msa0931420:CDS | 40.0% |
| TCGTAGACAACAGTTTCAAG+CGG | - | chr6_2:80873260-80873279 | None:intergenic | 40.0% | |
| AAATACAAGTCACGGAAACC+AGG | + | chr6_2:80873683-80873702 | Msa0931420:intron | 40.0% | |
| !!! | CTGTCTTTTAAGAAGCATCC+TGG | - | chr6_2:80873704-80873723 | None:intergenic | 40.0% |
| CAGGATGCTTCTTAAAAGAC+AGG | + | chr6_2:80873702-80873721 | Msa0931420:intron | 40.0% | |
| CTTAAAAGACAGGGACAAGA+AGG | + | chr6_2:80873712-80873731 | Msa0931420:intron | 40.0% | |
| GGCGCTAATTTATTCAATGG+AGG | + | chr6_2:80873733-80873752 | Msa0931420:intron | 40.0% | |
| TGAAAATGCTATGCAGGCAT+TGG | - | chr6_2:80874141-80874160 | None:intergenic | 40.0% | |
| ! | TAGGCGGCTAATTTTAAGCA+CGG | - | chr6_2:80874210-80874229 | None:intergenic | 40.0% |
| AAAAGGAAAGAGGTTGGACT+AGG | - | chr6_2:80874229-80874248 | None:intergenic | 40.0% | |
| ! | CGAGTTTTTCTCAACTGCTA+CGG | - | chr6_2:80874265-80874284 | None:intergenic | 40.0% |
| CGTAGCAGTTGAGAAAAACT+CGG | + | chr6_2:80874263-80874282 | Msa0931420:intron | 40.0% | |
| GTACATCAGTGAAGAGTAGA+AGG | - | chr6_2:80874517-80874536 | None:intergenic | 40.0% | |
| CGCTGAAGGAATTGAAACAA+TGG | + | chr6_2:80874580-80874599 | Msa0931420:CDS | 40.0% | |
| CTTCTCAGCTGAAGAAATTG+GGG | - | chr6_2:80874631-80874650 | None:intergenic | 40.0% | |
| CCTTCTCAGCTGAAGAAATT+GGG | - | chr6_2:80874632-80874651 | None:intergenic | 40.0% | |
| TCCTTCTCAGCTGAAGAAAT+TGG | - | chr6_2:80874633-80874652 | None:intergenic | 40.0% | |
| GGTACTATTTCAGCTGAAGA+AGG | - | chr6_2:80874757-80874776 | None:intergenic | 40.0% | |
| GAAATAGTACCTGAACCACT+TGG | + | chr6_2:80874766-80874785 | Msa0931420:CDS | 40.0% | |
| ATGACTAACACTACACCAAG+TGG | - | chr6_2:80874784-80874803 | None:intergenic | 40.0% | |
| TAGTGTTAGTCATCTCTGCT+TGG | + | chr6_2:80874791-80874810 | Msa0931420:CDS | 40.0% | |
| AAGTTGACCTTCAGCATGAT+TGG | + | chr6_2:80874829-80874848 | Msa0931420:intron | 40.0% | |
| AGTCAAACCAATCATGCTGA+AGG | - | chr6_2:80874839-80874858 | None:intergenic | 40.0% | |
| ! | GAACTTATTAGGGAGGTACA+TGG | + | chr6_2:80875292-80875311 | Msa0931420:CDS | 40.0% |
| CTCATCTATAAGAGTTGTGG+AGG | + | chr6_2:80875319-80875338 | Msa0931420:CDS | 40.0% | |
| CATCTATAAGAGTTGTGGAG+GGG | + | chr6_2:80875321-80875340 | Msa0931420:CDS | 40.0% | |
| ATCTATAAGAGTTGTGGAGG+GGG | + | chr6_2:80875322-80875341 | Msa0931420:CDS | 40.0% | |
| CTGCATTGTTGCAACAAAAG+TGG | + | chr6_2:80875360-80875379 | Msa0931420:CDS | 40.0% | |
| !! | ACCAGTCTGTTTTTCTTGGA+TGG | + | chr6_2:80875418-80875437 | Msa0931420:intron | 40.0% |
| ACCATCCAAGAAAAACAGAC+TGG | - | chr6_2:80875422-80875441 | None:intergenic | 40.0% | |
| AGGAAAATCTCCAACTGTTG+TGG | + | chr6_2:80875657-80875676 | Msa0931420:CDS | 40.0% | |
| ! | GTTATTTCCTTCAGTTCTCC+TGG | + | chr6_2:80875747-80875766 | Msa0931420:intron | 40.0% |
| GCTAAGACTTAGAACCTGAT+TGG | - | chr6_2:80875893-80875912 | None:intergenic | 40.0% | |
| ACAGCTAGACGGATAATTTC+AGG | + | chr6_2:80876010-80876029 | Msa0931420:CDS | 40.0% | |
| GACGGATAATTTCAGGAAAG+TGG | + | chr6_2:80876017-80876036 | Msa0931420:CDS | 40.0% | |
| AACGTAATCAGGAGAAATGC+AGG | - | chr6_2:80876062-80876081 | None:intergenic | 40.0% | |
| AAAAGACTTTGCCCCCAAAT+TGG | + | chr6_2:80876090-80876109 | Msa0931420:CDS | 40.0% | |
| CACAATGCGCGATAAATCAT+TGG | - | chr6_2:80876249-80876268 | None:intergenic | 40.0% | |
| !! | GTTTCTGGCAAGGTTGTTTA+TGG | + | chr6_2:80876317-80876336 | Msa0931420:CDS | 40.0% |
| GGTTGTTTATGGAGGTGAAA+AGG | + | chr6_2:80876328-80876347 | Msa0931420:CDS | 40.0% | |
| TGACACAAGCAAATTACAGG+AGG | + | chr6_2:80876423-80876442 | Msa0931420:intron | 40.0% | |
| ! | GGAGCGTCTAATACAATAGT+GGG | - | chr6_2:80876455-80876474 | None:intergenic | 40.0% |
| ! | TGGAGCGTCTAATACAATAG+TGG | - | chr6_2:80876456-80876475 | None:intergenic | 40.0% |
| TCCATTGCTTCCCATTATCA+CGG | + | chr6_2:80876511-80876530 | Msa0931420:CDS | 40.0% | |
| CTTTCTTTCTTGCTTGGAAC+AGG | + | chr6_2:80876639-80876658 | Msa0931420:intron | 40.0% | |
| ! | TGTGAAGAATGTTTCTGCTG+GGG | + | chr6_2:80876759-80876778 | Msa0931420:CDS | 40.0% |
| GTGGTTCATACTTTGCCATT+TGG | + | chr6_2:80876909-80876928 | Msa0931420:CDS | 40.0% | |
| ! | GGTTCATACTTTGCCATTTG+GGG | + | chr6_2:80876911-80876930 | Msa0931420:CDS | 40.0% |
| ! | GTTCATACTTTGCCATTTGG+GGG | + | chr6_2:80876912-80876931 | Msa0931420:CDS | 40.0% |
| AAAAAGGCAGTTCTTTACCG+TGG | + | chr6_2:80876996-80877015 | Msa0931420:CDS | 40.0% | |
| !! | GTTCTTTACCGTGGTTTTAC+GGG | + | chr6_2:80877005-80877024 | Msa0931420:CDS | 40.0% |
| TGCTTTGTATCAGTGTAAGG+CGG | - | chr6_2:80877050-80877069 | None:intergenic | 40.0% | |
| ! | TTGTTCGTGCTCTTTTTGGA+TGG | + | chr6_2:80877111-80877130 | Msa0931420:CDS | 40.0% |
| AGATCAGTCACAGAAGAAGG+TGG | + | chr6_2:80873061-80873080 | Msa0931420:CDS | 45.0% | |
| CAGAAGAAGGTGGTGTTTGA+CGG | + | chr6_2:80873071-80873090 | Msa0931420:CDS | 45.0% | |
| CAGAATTAAAGCTCACCCTC+AGG | - | chr6_2:80873124-80873143 | None:intergenic | 45.0% | |
| ! | CTGAGGGTGAGCTTTAATTC+TGG | + | chr6_2:80873122-80873141 | Msa0931420:CDS | 45.0% |
| TTTCAAGCGGTGGTTTAGCA+AGG | - | chr6_2:80873247-80873266 | None:intergenic | 45.0% | |
| TAGACAACAGTTTCAAGCGG+TGG | - | chr6_2:80873257-80873276 | None:intergenic | 45.0% | |
| GCTTGAAACTGTTGTCTACG+AGG | + | chr6_2:80873259-80873278 | Msa0931420:CDS | 45.0% | |
| TGCGTATTAGTGTGAGACTG+TGG | + | chr6_2:80874111-80874130 | Msa0931420:intron | 45.0% | |
| AGTTACTCGCGAAATTCGCA+TGG | + | chr6_2:80874161-80874180 | Msa0931420:intron | 45.0% | |
| CCCAATTTCTTCAGCTGAGA+AGG | + | chr6_2:80874629-80874648 | Msa0931420:intron | 45.0% | |
| AACACTACACCAAGTGGTTC+AGG | - | chr6_2:80874778-80874797 | None:intergenic | 45.0% | |
| AGCTCCAACAACTGGATCAA+GGG | - | chr6_2:80875204-80875223 | None:intergenic | 45.0% | |
| TAGCTCCAACAACTGGATCA+AGG | - | chr6_2:80875205-80875224 | None:intergenic | 45.0% | |
| !!! | TTTTAGAACCACGGCGTTTC+CGG | - | chr6_2:80875234-80875253 | None:intergenic | 45.0% |
| TCACTGCTGGCGAACTTATT+AGG | + | chr6_2:80875281-80875300 | Msa0931420:CDS | 45.0% | |
| CACTGCTGGCGAACTTATTA+GGG | + | chr6_2:80875282-80875301 | Msa0931420:CDS | 45.0% | |
| !! | CAGGTAATGGAAAAGTGGGA+CGG | + | chr6_2:80875581-80875600 | Msa0931420:intron | 45.0% |
| AAAAGTGGGACGGATAGTGA+TGG | + | chr6_2:80875591-80875610 | Msa0931420:CDS | 45.0% | |
| !! | GGAAAGTGGTGCTGTAACAA+TGG | + | chr6_2:80876031-80876050 | Msa0931420:CDS | 45.0% |
| !! | CTGTCTTTAAGGCATCAACC+TGG | - | chr6_2:80876190-80876209 | None:intergenic | 45.0% |
| TTCTAACCACTTTGCTCGCT+TGG | + | chr6_2:80876271-80876290 | Msa0931420:CDS | 45.0% | |
| TCTTTACCAAGCGAGCAAAG+TGG | - | chr6_2:80876280-80876299 | None:intergenic | 45.0% | |
| TGCTCGCTTGGTAAAGATGT+TGG | + | chr6_2:80876283-80876302 | Msa0931420:CDS | 45.0% | |
| AAAGATGTTGGACGACGAGA+AGG | + | chr6_2:80876295-80876314 | Msa0931420:CDS | 45.0% | |
| TCTGGCAAGGTTGTTTATGG+AGG | + | chr6_2:80876320-80876339 | Msa0931420:CDS | 45.0% | |
| !! | ACCGTGATAATGGGAAGCAA+TGG | - | chr6_2:80876515-80876534 | None:intergenic | 45.0% |
| ! | AGCTTCGATTTGATCAACGC+AGG | + | chr6_2:80876679-80876698 | Msa0931420:CDS | 45.0% |
| ! | GTGAAGAATGTTTCTGCTGG+GGG | + | chr6_2:80876760-80876779 | Msa0931420:CDS | 45.0% |
| TATGAACCACAAGCTGCACA+AGG | - | chr6_2:80876899-80876918 | None:intergenic | 45.0% | |
| CGTCAAAGGAGAATTTCCCA+TGG | - | chr6_2:80876965-80876984 | None:intergenic | 45.0% | |
| ATGCATCACCCGTAAAACCA+CGG | - | chr6_2:80877016-80877035 | None:intergenic | 45.0% | |
| ! | TTACGGGTGATGCATCGATA+AGG | + | chr6_2:80877021-80877040 | Msa0931420:CDS | 45.0% |
| GCTTTGTATCAGTGTAAGGC+GGG | - | chr6_2:80877049-80877068 | None:intergenic | 45.0% | |
| AACAACACCAGTAACATCGC+CGG | - | chr6_2:80877096-80877115 | None:intergenic | 45.0% | |
| !!! | GGTGTTGTTCGTGCTCTTTT+TGG | + | chr6_2:80877107-80877126 | Msa0931420:CDS | 45.0% |
| ACAAATGGTACAGCACTAGC+AGG | - | chr6_2:80877173-80877192 | None:intergenic | 45.0% | |
| !!! | AAATTATAATTCTTTTTTTT+TGG | + | chr6_2:80873342-80873361 | Msa0931420:intron | 5.0% |
| GAAACTAGCTGAGAGCAGAG+TGG | - | chr6_2:80872944-80872963 | None:intergenic | 50.0% | |
| ! | AGGAAAGAGGTTGGACTAGG+CGG | - | chr6_2:80874226-80874245 | None:intergenic | 50.0% |
| CTCATGTGAAGTCACGCTGA+AGG | + | chr6_2:80874566-80874585 | Msa0931420:CDS | 50.0% | |
| ACAATGGATGGCCCCAGAAA+AGG | + | chr6_2:80874596-80874615 | Msa0931420:CDS | 50.0% | |
| CTGTCCCTTGATCCAGTTGT+TGG | + | chr6_2:80875197-80875216 | Msa0931420:CDS | 50.0% | |
| GCTGCTATAGCTCCAACAAC+TGG | - | chr6_2:80875212-80875231 | None:intergenic | 50.0% | |
| GTTGTTGGAGCTATAGCAGC+CGG | + | chr6_2:80875212-80875231 | Msa0931420:CDS | 50.0% | |
| GAGGCTGGAGCAATTTCTGA+TGG | - | chr6_2:80875257-80875276 | None:intergenic | 50.0% | |
| TGCTGGCGAACTTATTAGGG+AGG | + | chr6_2:80875285-80875304 | Msa0931420:CDS | 50.0% | |
| ACACCTTACACCAGTCGTTC+TGG | + | chr6_2:80875627-80875646 | Msa0931420:CDS | 50.0% | |
| TGGCTATCCAGGAGAACTGA+AGG | - | chr6_2:80875757-80875776 | None:intergenic | 50.0% | |
| !! | GTTTGGTGCCTCTCATTTCC+AGG | + | chr6_2:80876169-80876188 | Msa0931420:intron | 50.0% |
| GGCATCAACCTGGAAATGAG+AGG | - | chr6_2:80876180-80876199 | None:intergenic | 50.0% | |
| TTGGACGACGAGAAGGTTTC+TGG | + | chr6_2:80876302-80876321 | Msa0931420:CDS | 50.0% | |
| CTTGGAACAGGTGAACAAGC+TGG | + | chr6_2:80876651-80876670 | Msa0931420:intron | 50.0% | |
| CCACAAGCTGCACAAGGAAA+AGG | - | chr6_2:80876893-80876912 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTTGTGCAGCTTG+TGG | + | chr6_2:80876890-80876909 | Msa0931420:intron | 50.0% |
| ! | ACTTTGCCATTTGGGGGAGT+TGG | + | chr6_2:80876918-80876937 | Msa0931420:CDS | 50.0% |
| !! | GGAGTTGGTGACAGTGGAAT+GGG | + | chr6_2:80876933-80876952 | Msa0931420:CDS | 50.0% |
| AGTGGAATGGGTGCATACCA+TGG | + | chr6_2:80876945-80876964 | Msa0931420:CDS | 50.0% | |
| GTGGAATGGGTGCATACCAT+GGG | + | chr6_2:80876946-80876965 | Msa0931420:CDS | 50.0% | |
| ! | TTGATGAAGGCTCTAGTCGC+CGG | + | chr6_2:80877074-80877093 | Msa0931420:CDS | 50.0% |
| GGTACAGCACTAGCAGGTAT+CGG | - | chr6_2:80877167-80877186 | None:intergenic | 50.0% | |
| GGTGGTGTTTGACGGAGAAG+CGG | + | chr6_2:80873079-80873098 | Msa0931420:CDS | 55.0% | |
| ! | GTCGTTGGTGAAGGACCTGA+GGG | + | chr6_2:80873106-80873125 | Msa0931420:CDS | 55.0% |
| AGTGGGACGGATAGTGATGG+CGG | + | chr6_2:80875594-80875613 | Msa0931420:CDS | 55.0% | |
| GCTCCAGAACGACTGGTGTA+AGG | - | chr6_2:80875633-80875652 | None:intergenic | 55.0% | |
| !! | ACACCAGTCGTTCTGGAGCT+TGG | + | chr6_2:80875634-80875653 | Msa0931420:CDS | 55.0% |
| !! | CGACGAGAAGGTTTCTGGCA+AGG | + | chr6_2:80876307-80876326 | Msa0931420:CDS | 55.0% |
| CTGTCACCAACTCCCCCAAA+TGG | - | chr6_2:80876927-80876946 | None:intergenic | 55.0% | |
| !! | TTTGGGGGAGTTGGTGACAG+TGG | + | chr6_2:80876927-80876946 | Msa0931420:CDS | 55.0% |
| !! | GGGAGTTGGTGACAGTGGAA+TGG | + | chr6_2:80876932-80876951 | Msa0931420:CDS | 55.0% |
| ! | CGTCGTTGGTGAAGGACCTG+AGG | + | chr6_2:80873105-80873124 | Msa0931420:CDS | 60.0% |
| TATAGCAGCCGGAAACGCCG+TGG | + | chr6_2:80875223-80875242 | Msa0931420:CDS | 60.0% | |
| TCCAGCCTCGTCTTCACTGC+TGG | + | chr6_2:80875268-80875287 | Msa0931420:CDS | 60.0% | |
| GTTCGCCAGCAGTGAAGACG+AGG | - | chr6_2:80875276-80875295 | None:intergenic | 60.0% | |
| CCTCCAAGCTCCAGAACGAC+TGG | - | chr6_2:80875640-80875659 | None:intergenic | 60.0% | |
| !! | CCAGTCGTTCTGGAGCTTGG+AGG | + | chr6_2:80875637-80875656 | Msa0931420:CDS | 60.0% |
| CTAGTCGCCGGCGATGTTAC+TGG | + | chr6_2:80877086-80877105 | Msa0931420:CDS | 60.0% | |
| ! | AGCGGCGTCGTCGTTGGTGA+AGG | + | chr6_2:80873097-80873116 | Msa0931420:CDS | 65.0% |
| GCCAGCAGTGAAGACGAGGC+TGG | - | chr6_2:80875272-80875291 | None:intergenic | 65.0% | |
| CGGAGAAGCGGCGTCGTCGT+TGG | + | chr6_2:80873091-80873110 | Msa0931420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 80872857 | 80877323 | 80872857 | ID=Msa0931420;Name=Msa0931420 |
| chr6_2 | mRNA | 80872857 | 80877323 | 80872857 | ID=Msa0931420-mRNA-1;Parent=Msa0931420;Name=Msa0931420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=152|1|1|1|0.9|0.81|11|184|490 |
| chr6_2 | exon | 80872857 | 80872918 | 80872857 | ID=Msa0931420-mRNA-1:exon:14151;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80872960 | 80873280 | 80872960 | ID=Msa0931420-mRNA-1:exon:14152;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80874549 | 80874617 | 80874549 | ID=Msa0931420-mRNA-1:exon:14153;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80874730 | 80874826 | 80874730 | ID=Msa0931420-mRNA-1:exon:14154;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80875195 | 80875401 | 80875195 | ID=Msa0931420-mRNA-1:exon:14155;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80875584 | 80875699 | 80875584 | ID=Msa0931420-mRNA-1:exon:14156;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80876007 | 80876111 | 80876007 | ID=Msa0931420-mRNA-1:exon:14157;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80876191 | 80876363 | 80876191 | ID=Msa0931420-mRNA-1:exon:14158;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80876442 | 80876532 | 80876442 | ID=Msa0931420-mRNA-1:exon:14159;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80876661 | 80876810 | 80876661 | ID=Msa0931420-mRNA-1:exon:14160;Parent=Msa0931420-mRNA-1 |
| chr6_2 | exon | 80876906 | 80877323 | 80876906 | ID=Msa0931420-mRNA-1:exon:14161;Parent=Msa0931420-mRNA-1 |
| chr6_2 | five_prime_UTR | 80872857 | 80872918 | 80872857 | ID=Msa0931420-mRNA-1:five_prime_utr;Parent=Msa0931420-mRNA-1 |
| chr6_2 | five_prime_UTR | 80872960 | 80873049 | 80872960 | ID=Msa0931420-mRNA-1:five_prime_utr;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80873050 | 80873280 | 80873050 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80874549 | 80874617 | 80874549 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80874730 | 80874826 | 80874730 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80875195 | 80875401 | 80875195 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80875584 | 80875699 | 80875584 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80876007 | 80876111 | 80876007 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80876191 | 80876363 | 80876191 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80876442 | 80876532 | 80876442 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80876661 | 80876810 | 80876661 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | CDS | 80876906 | 80877139 | 80876906 | ID=Msa0931420-mRNA-1:cds;Parent=Msa0931420-mRNA-1 |
| chr6_2 | three_prime_UTR | 80877140 | 80877323 | 80877140 | ID=Msa0931420-mRNA-1:three_prime_utr;Parent=Msa0931420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
