Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469920 | XP_003602065.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469920 | sp|Q9XI00|SKI32_ARATH | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469920 | B7FL96 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374360 | Msa0469920 | 0.919708 | 3.209054e-87 | -8.615850e-47 |
| Msa0374440 | Msa0469920 | 0.810123 | 1.347677e-50 | -8.615850e-47 |
| Msa0374530 | Msa0469920 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0374570 | Msa0469920 | 0.818700 | 1.709573e-52 | -8.615850e-47 |
| Msa0469920 | Msa0525370 | 0.978777 | 1.535156e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469920 | MtrunA17_Chr3g0124891 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Msa0469920 | MtrunA17_Chr4g0034401 | 98.182 | 55 | 1 | 0 | 20 | 74 | 17 | 71 | 7.13e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469920 | AT1G21760.1 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Msa0469920 | AT1G21760.2 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
Find 109 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGAACCAGGTATTTC+AGG | 0.219347 | 3_3:-71970720 | None:intergenic |
| CAATTCGTAACCCTGTATTT+TGG | 0.228001 | 3_3:+71967237 | Msa0469920:CDS |
| GTGAGACCTGTCGCGCCTTT+TGG | 0.256079 | 3_3:+71966636 | Msa0469920:CDS |
| GAATTTGCCCGTGGAGAAAA+TGG | 0.273613 | 3_3:+71970669 | Msa0469920:CDS |
| CTTTGTCTTTGTTCCATTTG+AGG | 0.303655 | 3_3:+71970389 | Msa0469920:CDS |
| TCACTCATGGCGTCAGGTTC+AGG | 0.314341 | 3_3:+71965925 | Msa0469920:exon |
| TGTGAGACTGCTGGCACATC+GGG | 0.330474 | 3_3:-71970348 | None:intergenic |
| CCTCTTGTGTGTGTCGAAAA+TGG | 0.348503 | 3_3:+71967207 | Msa0469920:CDS |
| AAAATGGATTATTATGTTCC+TGG | 0.362832 | 3_3:+71970685 | Msa0469920:CDS |
| GCCAAAACAGACTCTGTCTT+TGG | 0.364430 | 3_3:+71969124 | Msa0469920:CDS |
| TATAAATATTGAAAGTTATG+AGG | 0.373083 | 3_3:-71970748 | None:intergenic |
| TTCTGCAGGTCTGTTATTAC+CGG | 0.373358 | 3_3:+71968925 | Msa0469920:intron |
| TGAATGCATACCACGTGAAC+TGG | 0.384411 | 3_3:-71967829 | None:intergenic |
| CATGCATTGCGCCAAAATAC+AGG | 0.392919 | 3_3:-71967248 | None:intergenic |
| ACCAGATGAGCTGCTCTTTG+AGG | 0.392938 | 3_3:+71966710 | Msa0469920:CDS |
| AGTTAAACACATGATTTGTA+TGG | 0.399824 | 3_3:-71970974 | None:intergenic |
| ACCAAAGACAGAGTCTGTTT+TGG | 0.404539 | 3_3:-71969125 | None:intergenic |
| TTCCTTTCACTCATGGCGTC+AGG | 0.406079 | 3_3:+71965919 | Msa0469920:exon |
| ACATCTGAAGAGGACATTCT+TGG | 0.408711 | 3_3:+71970288 | Msa0469920:CDS |
| ACCTCAAAGAGCAGCTCATC+TGG | 0.409773 | 3_3:-71966711 | None:intergenic |
| CGGCCAAGGTTGCGATTTGA+CGG | 0.413839 | 3_3:+71967442 | Msa0469920:CDS |
| TAAAACTGTACCTCCTCAAA+TGG | 0.415424 | 3_3:-71970402 | None:intergenic |
| GGCGGAAAATGTGGCTCTTA+CGG | 0.415806 | 3_3:+71967422 | Msa0469920:CDS |
| CCTCAATTTCCTTTCACTCA+TGG | 0.417964 | 3_3:+71965912 | Msa0469920:exon |
| CAACTACAGGGGCTAACAAT+AGG | 0.418268 | 3_3:+71970214 | Msa0469920:CDS |
| AACGTAAGACACCAGAGGTT+TGG | 0.423828 | 3_3:-71965806 | None:intergenic |
| CTGTTAACTACTTTGTTACA+AGG | 0.425322 | 3_3:+71966472 | Msa0469920:CDS |
| ACACCAGAGGTTTGGTTTCG+CGG | 0.432398 | 3_3:-71965798 | None:intergenic |
| GAAGCTGCTGTCCTGTATCC+AGG | 0.445399 | 3_3:+71969310 | Msa0469920:CDS |
| ATCTGGGAAGTTTCTTTACA+AGG | 0.447611 | 3_3:+71968965 | Msa0469920:CDS |
| CAATTGAACCAGGTATTTCA+GGG | 0.451234 | 3_3:-71970719 | None:intergenic |
| TGCCAGCAGTCTCACATAAG+AGG | 0.453131 | 3_3:+71970355 | Msa0469920:CDS |
| CAAGTAGAAATACCTACATC+CGG | 0.465192 | 3_3:+71967776 | Msa0469920:CDS |
| TCCATGTGGTATAGGTTAAG+AGG | 0.465451 | 3_3:+71970189 | Msa0469920:intron |
| AGCGGAACAAAAGATAAATT+CGG | 0.469092 | 3_3:-71970831 | None:intergenic |
| TTGGCGCAATGCATGCTTGA+AGG | 0.473896 | 3_3:+71967256 | Msa0469920:CDS |
| AGGTTAAGAGGAACAACTAC+AGG | 0.479419 | 3_3:+71970201 | Msa0469920:intron |
| GGTCCCTTCTGAGTTGGAAT+CGG | 0.480778 | 3_3:+71966434 | Msa0469920:CDS |
| TTTCTACTTGCACTTCCAAA+AGG | 0.482993 | 3_3:-71966651 | None:intergenic |
| GCACTTCCAAAAGGCGCGAC+AGG | 0.483438 | 3_3:-71966642 | None:intergenic |
| GACATTCTTGGAGTCGTTGA+AGG | 0.484136 | 3_3:+71970300 | Msa0469920:CDS |
| AAAACAGTAGGTCGCATGCC+TGG | 0.485790 | 3_3:-71969328 | None:intergenic |
| ATGTGAGACTGCTGGCACAT+CGG | 0.486579 | 3_3:-71970349 | None:intergenic |
| TAGAACTGACTTCGTCAAAA+CGG | 0.493472 | 3_3:-71965838 | None:intergenic |
| TGCATGCTTGAAGGGTTGGC+AGG | 0.501973 | 3_3:+71967265 | Msa0469920:CDS |
| GGTTGTAATCCGAAAACATT+GGG | 0.515132 | 3_3:-71965744 | None:intergenic |
| TGGAGTCGTTGAAGGATGGC+AGG | 0.521728 | 3_3:+71970308 | Msa0469920:CDS |
| TAGGTCGCATGCCTGGATAC+AGG | 0.528585 | 3_3:-71969321 | None:intergenic |
| GCAATGCATGCTTGAAGGGT+TGG | 0.533926 | 3_3:+71967261 | Msa0469920:CDS |
| TTTAACGGTCCCTTCTGAGT+TGG | 0.534181 | 3_3:+71966428 | Msa0469920:CDS |
| TTGATCTCACTTGTCACTAG+TGG | 0.534671 | 3_3:+71970243 | Msa0469920:CDS |
| TCCACTCTGCAACTCCAACC+CGG | 0.540341 | 3_3:-71967795 | None:intergenic |
| TGGCGCAATGCATGCTTGAA+GGG | 0.540704 | 3_3:+71967257 | Msa0469920:CDS |
| TTCTTGGAGTCGTTGAAGGA+TGG | 0.542284 | 3_3:+71970304 | Msa0469920:CDS |
| CCCCTCTTATGTGAGACTGC+TGG | 0.544075 | 3_3:-71970357 | None:intergenic |
| TGTCTTTGTTCCATTTGAGG+AGG | 0.547210 | 3_3:+71970392 | Msa0469920:CDS |
| ATTCCGCGAAACCAAACCTC+TGG | 0.551803 | 3_3:+71965795 | Msa0469920:five_prime_UTR |
| GCCAGCAGTCTCACATAAGA+GGG | 0.555369 | 3_3:+71970356 | Msa0469920:CDS |
| AAATGTGGCTCTTACGGCCA+AGG | 0.555691 | 3_3:+71967428 | Msa0469920:CDS |
| TCAAATGGAACAAAGACAAA+GGG | 0.558084 | 3_3:-71970387 | None:intergenic |
| AAAACAGACTCTGTCTTTGG+TGG | 0.559204 | 3_3:+71969127 | Msa0469920:CDS |
| AACCTGACGCCATGAGTGAA+AGG | 0.560053 | 3_3:-71965921 | None:intergenic |
| GTTACAAGGAGGCCATGGCT+TGG | 0.560559 | 3_3:+71966486 | Msa0469920:CDS |
| AATCAAAATACGATGGCTCA+TGG | 0.565621 | 3_3:+71967401 | Msa0469920:CDS |
| TTCAGGGGCAGCATTCAACC+AGG | 0.571279 | 3_3:-71970703 | None:intergenic |
| ACTTTGTTACAAGGAGGCCA+TGG | 0.571990 | 3_3:+71966481 | Msa0469920:CDS |
| TTGTAAAGAAACTTCCCAGA+TGG | 0.574995 | 3_3:-71968963 | None:intergenic |
| CCATGAGTGAAAGGAAATTG+AGG | 0.575708 | 3_3:-71965912 | None:intergenic |
| AATGCTGCCCCTGAAATACC+TGG | 0.575749 | 3_3:+71970711 | Msa0469920:exon |
| CTCAAATGGAACAAAGACAA+AGG | 0.580041 | 3_3:-71970388 | None:intergenic |
| TGCAACTCCAACCCGGATGT+AGG | 0.586345 | 3_3:-71967788 | None:intergenic |
| ATGGCTCATGGCGGAAAATG+TGG | 0.589306 | 3_3:+71967413 | Msa0469920:CDS |
| TACAGGGGCTAACAATAGGA+TGG | 0.594300 | 3_3:+71970218 | Msa0469920:CDS |
| TTACCGTCAAATCGCAACCT+TGG | 0.595041 | 3_3:-71967445 | None:intergenic |
| TGAAAGGAAATTGAGGTGAA+AGG | 0.598779 | 3_3:-71965905 | None:intergenic |
| AAACCGATTCCAACTCAGAA+GGG | 0.600214 | 3_3:-71966437 | None:intergenic |
| TCGAATGACTCCATATGACA+TGG | 0.601277 | 3_3:+71967178 | Msa0469920:CDS |
| AATTTGCGTACTTGCATGTG+TGG | 0.602551 | 3_3:+71970776 | Msa0469920:three_prime_UTR |
| AGAAATACCTACATCCGGGT+TGG | 0.606217 | 3_3:+71967781 | Msa0469920:CDS |
| GGTTAAGAGGAACAACTACA+GGG | 0.606446 | 3_3:+71970202 | Msa0469920:intron |
| TTCTCAAAAGATCAAAGATG+TGG | 0.608842 | 3_3:+71969078 | Msa0469920:CDS |
| CTACACATTGACAGATGACA+AGG | 0.608992 | 3_3:+71969153 | Msa0469920:CDS |
| TGAGGCAAGTACATCTGAAG+AGG | 0.609172 | 3_3:+71970278 | Msa0469920:CDS |
| AAAACCGATTCCAACTCAGA+AGG | 0.609545 | 3_3:-71966438 | None:intergenic |
| TAGTGGTGTGGACACTAATG+AGG | 0.610301 | 3_3:+71970260 | Msa0469920:CDS |
| ATGCGTATCCTCAAAACAGT+AGG | 0.614318 | 3_3:-71969340 | None:intergenic |
| ATGCATTGCGCCAAAATACA+GGG | 0.615006 | 3_3:-71967247 | None:intergenic |
| GAGGTATTTACAATTGAACC+AGG | 0.615601 | 3_3:-71970729 | None:intergenic |
| CTCACTTGTCACTAGTGGTG+TGG | 0.615722 | 3_3:+71970248 | Msa0469920:CDS |
| CGGTTGTAATCCGAAAACAT+TGG | 0.624551 | 3_3:-71965745 | None:intergenic |
| TTTGGTTAAAGATCTTTATG+GGG | 0.625965 | 3_3:+71966608 | Msa0469920:intron |
| AAGTAGAAATACCTACATCC+GGG | 0.640220 | 3_3:+71967777 | Msa0469920:CDS |
| CGAATGACTCCATATGACAT+GGG | 0.647091 | 3_3:+71967179 | Msa0469920:CDS |
| ATACTTCAATCAAAATACGA+TGG | 0.652918 | 3_3:+71967394 | Msa0469920:CDS |
| GCGTTGTACATACCAAGCCA+TGG | 0.657436 | 3_3:-71966498 | None:intergenic |
| TTAACTACTTTGTTACAAGG+AGG | 0.664306 | 3_3:+71966475 | Msa0469920:CDS |
| AAAAGAGAAGAATCAACATG+AGG | 0.664765 | 3_3:-71966675 | None:intergenic |
| AATTGAACCAGGTATTTCAG+GGG | 0.670026 | 3_3:-71970718 | None:intergenic |
| TCTGACATGCACATGCCACA+CGG | 0.673940 | 3_3:-71965765 | None:intergenic |
| TCCGGGTTGGAGTTGCAGAG+TGG | 0.680422 | 3_3:+71967794 | Msa0469920:CDS |
| AATCACTAATCCAGTTCACG+TGG | 0.691915 | 3_3:+71967819 | Msa0469920:CDS |
| CCAGCAGTCTCACATAAGAG+GGG | 0.706035 | 3_3:+71970357 | Msa0469920:CDS |
| CATGAAATGATTCAGAACCA+CGG | 0.728651 | 3_3:-71965882 | None:intergenic |
| CAAAATACGATGGCTCATGG+CGG | 0.731935 | 3_3:+71967404 | Msa0469920:CDS |
| GTTAAGAGGAACAACTACAG+GGG | 0.746465 | 3_3:+71970203 | Msa0469920:CDS |
| GTATCAACGTAAGACACCAG+AGG | 0.750941 | 3_3:-71965811 | None:intergenic |
| GTGAGACTGCTGGCACATCG+GGG | 0.755204 | 3_3:-71970347 | None:intergenic |
| CTTGTGTGTGTCGAAAATGG+CGG | 0.757415 | 3_3:+71967210 | Msa0469920:CDS |
| AGTTACATAGGAGCACAAAG+CGG | 0.795708 | 3_3:-71970849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAAATCAGA+TGG | + | chr3_3:71966352-71966371 | Msa0469920:intron | 10.0% |
| !!! | ATTCAAATCTTTAAAATCTT+TGG | + | chr3_3:71966037-71966056 | Msa0469920:intron | 15.0% |
| !!! | AATTTTCAACAATTTTAACA+TGG | + | chr3_3:71966080-71966099 | Msa0469920:intron | 15.0% |
| !!! | ATTTTCAACAATTTTAACAT+GGG | + | chr3_3:71966081-71966100 | Msa0469920:intron | 15.0% |
| !!! | TAAATTAATAATTTTGAGAC+CGG | + | chr3_3:71966120-71966139 | Msa0469920:intron | 15.0% |
| !! | TATTATTAATTAAGATGACA+CGG | - | chr3_3:71966339-71966358 | None:intergenic | 15.0% |
| !! | AACACAATAATAAATAAACA+TGG | - | chr3_3:71966529-71966548 | None:intergenic | 15.0% |
| !!! | TAAAAATAATATTCTGAAAG+TGG | + | chr3_3:71967641-71967660 | Msa0469920:intron | 15.0% |
| !! | GATATTAAATTGATAAATAG+TGG | - | chr3_3:71967965-71967984 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAAAA+AGG | + | chr3_3:71968070-71968089 | Msa0469920:intron | 15.0% |
| !!! | ATTTTAAAGCCTTTTTTTTT+AGG | - | chr3_3:71968082-71968101 | None:intergenic | 15.0% |
| !! | GCATTATTTAAATCTATATA+CGG | + | chr3_3:71969248-71969267 | Msa0469920:intron | 15.0% |
| !! | AATTTACATGTGATATTATT+TGG | - | chr3_3:71969705-71969724 | None:intergenic | 15.0% |
| !! | TATAAATATTGAAAGTTATG+AGG | - | chr3_3:71970751-71970770 | None:intergenic | 15.0% |
| !!! | AATCATATATCCTTTATTTT+TGG | + | chr3_3:71971013-71971032 | Msa0469920:three_prime_UTR | 15.0% |
| !!! | TTTTCAAATTCCAAAAATAA+AGG | - | chr3_3:71971026-71971045 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAACAATGAAGA+AGG | - | chr3_3:71965986-71966005 | None:intergenic | 20.0% |
| !! | GCATATTACATAAATGAAAT+TGG | + | chr3_3:71966220-71966239 | Msa0469920:intron | 20.0% |
| !!! | CTTATTGTTTTTATGTGTTT+TGG | + | chr3_3:71966590-71966609 | Msa0469920:intron | 20.0% |
| !!! | TTTTGGTTAAAGATCTTTAT+GGG | + | chr3_3:71966607-71966626 | Msa0469920:intron | 20.0% |
| !!! | ATTTATTGAATACATTTTGC+AGG | + | chr3_3:71967148-71967167 | Msa0469920:intron | 20.0% |
| !! | AATAAAAAACTTAACCATCA+CGG | - | chr3_3:71967528-71967547 | None:intergenic | 20.0% |
| !! | TGGAAATTTATCGTATTTAA+AGG | + | chr3_3:71967569-71967588 | Msa0469920:intron | 20.0% |
| !! | AGACTAACAGAATTTAAAAA+AGG | - | chr3_3:71967890-71967909 | None:intergenic | 20.0% |
| !! | AATTGTAGTATTTGAATAGA+GGG | + | chr3_3:71968416-71968435 | Msa0469920:intron | 20.0% |
| !! | AACAATTATAATGGTTAACA+AGG | - | chr3_3:71968447-71968466 | None:intergenic | 20.0% |
| !! | TTAACCATTATAATTGTTGA+GGG | + | chr3_3:71968449-71968468 | Msa0469920:intron | 20.0% |
| !! | TTATTCATATGCTTAAAGAT+TGG | - | chr3_3:71968816-71968835 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGGTTATAATT+TGG | + | chr3_3:71968976-71968995 | Msa0469920:intron | 20.0% |
| !! | TCATTATTTGTATATCTACT+AGG | + | chr3_3:71969199-71969218 | Msa0469920:intron | 20.0% |
| !! | AGAATTATGTATTATTAGTG+AGG | + | chr3_3:71969536-71969555 | Msa0469920:intron | 20.0% |
| !! | TCACTTAATATAAGTTAGAA+TGG | + | chr3_3:71969785-71969804 | Msa0469920:intron | 20.0% |
| !!! | ATTTTTTTAGCTTACAGAAA+AGG | - | chr3_3:71970063-71970082 | None:intergenic | 20.0% |
| !! | AACAAATTGAGACAATATTT+AGG | - | chr3_3:71970477-71970496 | None:intergenic | 20.0% |
| !!! | CTATAGTATTTTTCTATTTG+AGG | + | chr3_3:71970526-71970545 | Msa0469920:intron | 20.0% |
| !!! | AACATGGGTTTTAAATTTGT+TGG | + | chr3_3:71966096-71966115 | Msa0469920:intron | 25.0% |
| !!! | ACATGGGTTTTAAATTTGTT+GGG | + | chr3_3:71966097-71966116 | Msa0469920:intron | 25.0% |
| !! | GTTTGTAGATTTTGCTTTAA+CGG | + | chr3_3:71966413-71966432 | Msa0469920:intron | 25.0% |
| !!! | GTTTTGGTTAAAGATCTTTA+TGG | + | chr3_3:71966606-71966625 | Msa0469920:intron | 25.0% |
| ! | TTTGGTTAAAGATCTTTATG+GGG | + | chr3_3:71966608-71966627 | Msa0469920:intron | 25.0% |
| ! | ATGTATGTAACTACACTATT+TGG | + | chr3_3:71966749-71966768 | Msa0469920:intron | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | + | chr3_3:71966937-71966956 | Msa0469920:intron | 25.0% |
| ! | CTGTTCTTAAAATAAGAATC+AGG | + | chr3_3:71967070-71967089 | Msa0469920:intron | 25.0% |
| ! | ATAAGAATCAGGAAAGTTTA+TGG | + | chr3_3:71967081-71967100 | Msa0469920:intron | 25.0% |
| ! | CAAGTCTAATTTCTGATTAT+GGG | + | chr3_3:71967330-71967349 | Msa0469920:intron | 25.0% |
| ! | AAGTCTAATTTCTGATTATG+GGG | + | chr3_3:71967331-71967350 | Msa0469920:intron | 25.0% |
| ! | ATACTTCAATCAAAATACGA+TGG | + | chr3_3:71967394-71967413 | Msa0469920:CDS | 25.0% |
| ! | ATAAAAAACTTAACCATCAC+GGG | - | chr3_3:71967527-71967546 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAGAACAGAAA+AGG | - | chr3_3:71967710-71967729 | None:intergenic | 25.0% |
| !!! | TATGCCAATTAGTCTTATTA+TGG | + | chr3_3:71967731-71967750 | Msa0469920:intron | 25.0% |
| ! | TGAAAACCTCATGAATTAAA+AGG | + | chr3_3:71968151-71968170 | Msa0469920:intron | 25.0% |
| ! | TCATGCTGAAAATGAATTTA+AGG | + | chr3_3:71968190-71968209 | Msa0469920:intron | 25.0% |
| ! | GAATTGTAGTATTTGAATAG+AGG | + | chr3_3:71968415-71968434 | Msa0469920:intron | 25.0% |
| ! | GTTAACCATTATAATTGTTG+AGG | + | chr3_3:71968448-71968467 | Msa0469920:intron | 25.0% |
| ! | TAACCATTATAATTGTTGAG+GGG | + | chr3_3:71968450-71968469 | Msa0469920:intron | 25.0% |
| ! | TGTAAATTTATGTTTACCGA+TGG | - | chr3_3:71968690-71968709 | None:intergenic | 25.0% |
| ! | TCGGTAAACATAAATTTACA+AGG | + | chr3_3:71968690-71968709 | Msa0469920:intron | 25.0% |
| !! | TGTTAACTTAACCTTTTAAC+AGG | - | chr3_3:71969399-71969418 | None:intergenic | 25.0% |
| ! | AAACTAATATTTAGCACAAG+TGG | + | chr3_3:71970087-71970106 | Msa0469920:intron | 25.0% |
| ! | ATATATAAGCATAGTGCAAA+AGG | - | chr3_3:71970166-71970185 | None:intergenic | 25.0% |
| ! | ACAAAAAGGCAAAAATGTAA+GGG | - | chr3_3:71970628-71970647 | None:intergenic | 25.0% |
| ! | TACAAAAAGGCAAAAATGTA+AGG | - | chr3_3:71970629-71970648 | None:intergenic | 25.0% |
| !! | ACATTTTTGCCTTTTTGTAT+AGG | + | chr3_3:71970630-71970649 | Msa0469920:intron | 25.0% |
| !! | ATAATAATCCATTTTCTCCA+CGG | - | chr3_3:71970680-71970699 | None:intergenic | 25.0% |
| !!! | AAAATGGATTATTATGTTCC+TGG | + | chr3_3:71970685-71970704 | Msa0469920:CDS | 25.0% |
| ! | CTCCTATGTAACTATAAAAA+CGG | + | chr3_3:71970859-71970878 | Msa0469920:three_prime_UTR | 25.0% |
| !!! | AACCGTTTTTATAGTTACAT+AGG | - | chr3_3:71970864-71970883 | None:intergenic | 25.0% |
| ! | ATAAAAACGGTTTGTACATA+AGG | + | chr3_3:71970872-71970891 | Msa0469920:three_prime_UTR | 25.0% |
| ! | TAAAAACGGTTTGTACATAA+GGG | + | chr3_3:71970873-71970892 | Msa0469920:three_prime_UTR | 25.0% |
| !! | AGTTAAACACATGATTTGTA+TGG | - | chr3_3:71970977-71970996 | None:intergenic | 25.0% |
| ! | TCAATTTTCAATAGATACCG+TGG | + | chr3_3:71965865-71965884 | Msa0469920:five_prime_UTR | 30.0% |
| ACAATTAGCGCAATAATAGA+TGG | - | chr3_3:71966016-71966035 | None:intergenic | 30.0% | |
| TTCAGCTGAATATTCATTTG+AGG | + | chr3_3:71966147-71966166 | Msa0469920:intron | 30.0% | |
| ATTGGAAAGATTATGTCCAT+AGG | + | chr3_3:71966238-71966257 | Msa0469920:intron | 30.0% | |
| AGAATTTGAACTATGTCACA+AGG | - | chr3_3:71966290-71966309 | None:intergenic | 30.0% | |
| CTGTTAACTACTTTGTTACA+AGG | + | chr3_3:71966472-71966491 | Msa0469920:CDS | 30.0% | |
| TTAACTACTTTGTTACAAGG+AGG | + | chr3_3:71966475-71966494 | Msa0469920:CDS | 30.0% | |
| AAAAGAGAAGAATCAACATG+AGG | - | chr3_3:71966678-71966697 | None:intergenic | 30.0% | |
| !!! | TGGTCATGACTTTTTTGATA+TGG | + | chr3_3:71966769-71966788 | Msa0469920:intron | 30.0% |
| !!! | ATGACTTTTTTGATATGGTG+TGG | + | chr3_3:71966774-71966793 | Msa0469920:intron | 30.0% |
| !!! | TGACTTTTTTGATATGGTGT+GGG | + | chr3_3:71966775-71966794 | Msa0469920:intron | 30.0% |
| TCATGTACGATATTTGATGT+GGG | + | chr3_3:71966860-71966879 | Msa0469920:intron | 30.0% | |
| ATATTTGATGTGGGTATGTT+TGG | + | chr3_3:71966869-71966888 | Msa0469920:intron | 30.0% | |
| ! | TTAAGTTTCAAGTGTACGAA+GGG | - | chr3_3:71966933-71966952 | None:intergenic | 30.0% |
| ! | TTTAAGTTTCAAGTGTACGA+AGG | - | chr3_3:71966934-71966953 | None:intergenic | 30.0% |
| CACAACTTATTGACAGTATT+TGG | + | chr3_3:71967009-71967028 | Msa0469920:intron | 30.0% | |
| GCAAGTCTAATTTCTGATTA+TGG | + | chr3_3:71967329-71967348 | Msa0469920:intron | 30.0% | |
| TAGTTGAAACAAATGCTGTA+TGG | + | chr3_3:71967549-71967568 | Msa0469920:intron | 30.0% | |
| !!! | TTATTTTTAGTCTTGTGCAG+TGG | - | chr3_3:71967630-71967649 | None:intergenic | 30.0% |
| AGGACCATAATAAGACTAAT+TGG | - | chr3_3:71967738-71967757 | None:intergenic | 30.0% | |
| AAGGATATCTATTTCGTAGT+AGG | - | chr3_3:71967871-71967890 | None:intergenic | 30.0% | |
| TTCATTGTTAGATCTGCATT+CGG | + | chr3_3:71967913-71967932 | Msa0469920:intron | 30.0% | |
| !!! | GATCAGAAACTAGTTTTATG+AGG | + | chr3_3:71968022-71968041 | Msa0469920:intron | 30.0% |
| ! | ATTGTTTTCATGCAAACACT+AGG | + | chr3_3:71968100-71968119 | Msa0469920:intron | 30.0% |
| ! | TTGTTTTCATGCAAACACTA+GGG | + | chr3_3:71968101-71968120 | Msa0469920:intron | 30.0% |
| !! | TCAGATCCTTTTAATTCATG+AGG | - | chr3_3:71968160-71968179 | None:intergenic | 30.0% |
| ! | TTATTTTCCTATACTCTGCA+GGG | - | chr3_3:71968287-71968306 | None:intergenic | 30.0% |
| TTGTATTGTCCTTGATATAG+CGG | + | chr3_3:71968487-71968506 | Msa0469920:intron | 30.0% | |
| GAGGAATTCCATGTAAAAAT+TGG | + | chr3_3:71968553-71968572 | Msa0469920:intron | 30.0% | |
| ! | CTGGAAAACCAATTTTTACA+TGG | - | chr3_3:71968564-71968583 | None:intergenic | 30.0% |
| ! | TTCATCTAAGCATTGCATTT+AGG | + | chr3_3:71968736-71968755 | Msa0469920:intron | 30.0% |
| TACTTCACAAGATTTACTCA+TGG | - | chr3_3:71968857-71968876 | None:intergenic | 30.0% | |
| TTCTCAAAAGATCAAAGATG+TGG | + | chr3_3:71969078-71969097 | Msa0469920:CDS | 30.0% | |
| AAATCTATATACGGATCTTG+AGG | + | chr3_3:71969257-71969276 | Msa0469920:intron | 30.0% | |
| TTTAACAGGATATGCTATCA+AGG | - | chr3_3:71969385-71969404 | None:intergenic | 30.0% | |
| TGATAGCATATCCTGTTAAA+AGG | + | chr3_3:71969385-71969404 | Msa0469920:intron | 30.0% | |
| ! | GGAATACAAAGTTTCTTTTC+TGG | - | chr3_3:71969429-71969448 | None:intergenic | 30.0% |
| ! | AGGAACAATTACCATTTTGT+TGG | + | chr3_3:71969578-71969597 | Msa0469920:intron | 30.0% |
| ! | ACAATTACCATTTTGTTGGT+TGG | + | chr3_3:71969582-71969601 | Msa0469920:intron | 30.0% |
| !!! | ATTTTGTAGACTTGTTAAGG+TGG | - | chr3_3:71969766-71969785 | None:intergenic | 30.0% |
| !!! | GTGATTTTGTAGACTTGTTA+AGG | - | chr3_3:71969769-71969788 | None:intergenic | 30.0% |
| AAGTGATGTAAGATAGAGAA+GGG | - | chr3_3:71969844-71969863 | None:intergenic | 30.0% | |
| TAAGTGATGTAAGATAGAGA+AGG | - | chr3_3:71969845-71969864 | None:intergenic | 30.0% | |
| !!! | ACGCAATCAAAACTTTTTCA+CGG | - | chr3_3:71969885-71969904 | None:intergenic | 30.0% |
| AACAGTTGTGTACTTAAGAA+TGG | + | chr3_3:71969912-71969931 | Msa0469920:intron | 30.0% | |
| ATGTAGGTAGAATTTGAACA+AGG | + | chr3_3:71969976-71969995 | Msa0469920:intron | 30.0% | |
| ! | AAGGAAAGTATGCAGTTTAT+TGG | + | chr3_3:71969995-71970014 | Msa0469920:intron | 30.0% |
| TGATTCTCTGGTCTAATATT+TGG | - | chr3_3:71970115-71970134 | None:intergenic | 30.0% | |
| TGCTTATATATATCTCCATG+TGG | + | chr3_3:71970175-71970194 | Msa0469920:intron | 30.0% | |
| TATATATCTCCATGTGGTAT+AGG | + | chr3_3:71970181-71970200 | Msa0469920:intron | 30.0% | |
| TCAAATGGAACAAAGACAAA+GGG | - | chr3_3:71970390-71970409 | None:intergenic | 30.0% | |
| CAAAAAGGCAAAAATGTAAG+GGG | - | chr3_3:71970627-71970646 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTTTTGTATAGG+TGG | + | chr3_3:71970633-71970652 | Msa0469920:intron | 30.0% |
| ! | TAATAATCCATTTTCTCCAC+GGG | - | chr3_3:71970679-71970698 | None:intergenic | 30.0% |
| AGCGGAACAAAAGATAAATT+CGG | - | chr3_3:71970834-71970853 | None:intergenic | 30.0% | |
| GGTTGTAATCCGAAAACATT+GGG | - | chr3_3:71965747-71965766 | None:intergenic | 35.0% | |
| ! | TAGAACTGACTTCGTCAAAA+CGG | - | chr3_3:71965841-71965860 | None:intergenic | 35.0% |
| CATGAAATGATTCAGAACCA+CGG | - | chr3_3:71965885-71965904 | None:intergenic | 35.0% | |
| TGAAAGGAAATTGAGGTGAA+AGG | - | chr3_3:71965908-71965927 | None:intergenic | 35.0% | |
| CTAAAACAATGAAGAAGGTG+CGG | - | chr3_3:71965981-71966000 | None:intergenic | 35.0% | |
| AGTTCAAATTCTCTCCTAGA+CGG | + | chr3_3:71966298-71966317 | Msa0469920:intron | 35.0% | |
| ! | TCATCATTTTACAACCGTCT+AGG | - | chr3_3:71966315-71966334 | None:intergenic | 35.0% |
| TTTCTACTTGCACTTCCAAA+AGG | - | chr3_3:71966654-71966673 | None:intergenic | 35.0% | |
| CTCATGTACGATATTTGATG+TGG | + | chr3_3:71966859-71966878 | Msa0469920:intron | 35.0% | |
| ! | CAATTCGTAACCCTGTATTT+TGG | + | chr3_3:71967237-71967256 | Msa0469920:CDS | 35.0% |
| AATCAAAATACGATGGCTCA+TGG | + | chr3_3:71967401-71967420 | Msa0469920:CDS | 35.0% | |
| AATATGAGGGGCAAGAAATA+AGG | - | chr3_3:71967495-71967514 | None:intergenic | 35.0% | |
| ! | TAAAGGTGTGATTCTCTTCT+AGG | + | chr3_3:71967586-71967605 | Msa0469920:intron | 35.0% |
| TTATTATGGTCCTGCATCAT+AGG | + | chr3_3:71967745-71967764 | Msa0469920:intron | 35.0% | |
| CAAGTAGAAATACCTACATC+CGG | + | chr3_3:71967776-71967795 | Msa0469920:CDS | 35.0% | |
| AAGTAGAAATACCTACATCC+GGG | + | chr3_3:71967777-71967796 | Msa0469920:CDS | 35.0% | |
| ! | TCCATGAAACTCTAGAGAAA+TGG | + | chr3_3:71968233-71968252 | Msa0469920:intron | 35.0% |
| !! | TCCATTTCTCTAGAGTTTCA+TGG | - | chr3_3:71968237-71968256 | None:intergenic | 35.0% |
| !! | CTTATTTTCCTATACTCTGC+AGG | - | chr3_3:71968288-71968307 | None:intergenic | 35.0% |
| ! | TTGGGCATGTCAAAGAATTT+TGG | + | chr3_3:71968350-71968369 | Msa0469920:intron | 35.0% |
| TGTGACTGACTAATTAAGCA+GGG | - | chr3_3:71968393-71968412 | None:intergenic | 35.0% | |
| !! | AAAAGCATTCCGCTATATCA+AGG | - | chr3_3:71968499-71968518 | None:intergenic | 35.0% |
| ! | GTGTTTTTCATCCTCATAGA+TGG | + | chr3_3:71968531-71968550 | Msa0469920:intron | 35.0% |
| ! | TTTTTCATCCTCATAGATGG+AGG | + | chr3_3:71968534-71968553 | Msa0469920:intron | 35.0% |
| TAAAACACACCTTCTGATGA+AGG | - | chr3_3:71968593-71968612 | None:intergenic | 35.0% | |
| CATATGGTATATCCACTATC+CGG | - | chr3_3:71968649-71968668 | None:intergenic | 35.0% | |
| TGGATATACCATATGCTATC+TGG | + | chr3_3:71968654-71968673 | Msa0469920:intron | 35.0% | |
| ! | ATCTAAGCATTGCATTTAGG+AGG | + | chr3_3:71968739-71968758 | Msa0469920:intron | 35.0% |
| ATAACAGACCTGCAGAATAT+GGG | - | chr3_3:71968922-71968941 | None:intergenic | 35.0% | |
| AATAACAGACCTGCAGAATA+TGG | - | chr3_3:71968923-71968942 | None:intergenic | 35.0% | |
| ATGGAAAAAATCTCAGGTAC+CGG | - | chr3_3:71968947-71968966 | None:intergenic | 35.0% | |
| !!! | TACCTGAGATTTTTTCCATC+TGG | + | chr3_3:71968948-71968967 | Msa0469920:CDS | 35.0% |
| !!! | ACCTGAGATTTTTTCCATCT+GGG | + | chr3_3:71968949-71968968 | Msa0469920:CDS | 35.0% |
| TTGTAAAGAAACTTCCCAGA+TGG | - | chr3_3:71968966-71968985 | None:intergenic | 35.0% | |
| ATCTGGGAAGTTTCTTTACA+AGG | + | chr3_3:71968965-71968984 | Msa0469920:CDS | 35.0% | |
| GTTCTCATACAATCACATAC+AGG | - | chr3_3:71969037-71969056 | None:intergenic | 35.0% | |
| GCTATTGATATCATCATTGC+AGG | + | chr3_3:71969285-71969304 | Msa0469920:intron | 35.0% | |
| GAAACTTTGTATTCCCTATC+TGG | + | chr3_3:71969434-71969453 | Msa0469920:intron | 35.0% | |
| TTTGTATTCCCTATCTGGTT+AGG | + | chr3_3:71969439-71969458 | Msa0469920:intron | 35.0% | |
| AAATCCAACCTAACCAGATA+GGG | - | chr3_3:71969450-71969469 | None:intergenic | 35.0% | |
| TTGATCTATTCTCTTAGCAG+AGG | - | chr3_3:71969488-71969507 | None:intergenic | 35.0% | |
| GCTTCTTCTAATGCTTTAAC+AGG | + | chr3_3:71969558-71969577 | Msa0469920:intron | 35.0% | |
| ATGAATGCCAACCAACAAAA+TGG | - | chr3_3:71969592-71969611 | None:intergenic | 35.0% | |
| GTTGGTTGGCATTCATTAAT+TGG | + | chr3_3:71969596-71969615 | Msa0469920:intron | 35.0% | |
| TTCATTAATCCTCATCTACC+AGG | + | chr3_3:71969723-71969742 | Msa0469920:intron | 35.0% | |
| TCATTAATCCTCATCTACCA+GGG | + | chr3_3:71969724-71969743 | Msa0469920:intron | 35.0% | |
| ! | GGTCGATCACAATTACATTT+TGG | - | chr3_3:71969823-71969842 | None:intergenic | 35.0% |
| CTATCTTACATCACTTACAC+TGG | + | chr3_3:71969848-71969867 | Msa0469920:intron | 35.0% | |
| ! | GTTTATTAGCCTCTGAATGT+AGG | + | chr3_3:71969960-71969979 | Msa0469920:intron | 35.0% |
| CAAATTCTACCTACATTCAG+AGG | - | chr3_3:71969972-71969991 | None:intergenic | 35.0% | |
| CAAACGTGTCAAAAAAGAGT+TGG | + | chr3_3:71970135-71970154 | Msa0469920:intron | 35.0% | |
| CTCAAATGGAACAAAGACAA+AGG | - | chr3_3:71970391-71970410 | None:intergenic | 35.0% | |
| CTTTGTCTTTGTTCCATTTG+AGG | + | chr3_3:71970389-71970408 | Msa0469920:CDS | 35.0% | |
| TAAAACTGTACCTCCTCAAA+TGG | - | chr3_3:71970405-71970424 | None:intergenic | 35.0% | |
| ATGTCTCCACCTATACAAAA+AGG | - | chr3_3:71970642-71970661 | None:intergenic | 35.0% | |
| AATTGAACCAGGTATTTCAG+GGG | - | chr3_3:71970721-71970740 | None:intergenic | 35.0% | |
| CAATTGAACCAGGTATTTCA+GGG | - | chr3_3:71970722-71970741 | None:intergenic | 35.0% | |
| ACAATTGAACCAGGTATTTC+AGG | - | chr3_3:71970723-71970742 | None:intergenic | 35.0% | |
| ! | GAGGTATTTACAATTGAACC+AGG | - | chr3_3:71970732-71970751 | None:intergenic | 35.0% |
| ! | AGTACGGTACCCAATGTTTT+CGG | + | chr3_3:71965735-71965754 | Msa0469920:five_prime_UTR | 40.0% |
| CGGTTGTAATCCGAAAACAT+TGG | - | chr3_3:71965748-71965767 | None:intergenic | 40.0% | |
| CCATGAGTGAAAGGAAATTG+AGG | - | chr3_3:71965915-71965934 | None:intergenic | 40.0% | |
| CCTCAATTTCCTTTCACTCA+TGG | + | chr3_3:71965912-71965931 | Msa0469920:exon | 40.0% | |
| ! | GAATATTCAGCTGAAAGCAC+CGG | - | chr3_3:71966142-71966161 | None:intergenic | 40.0% |
| AACAATGAGCTGAAAGCCTA+TGG | - | chr3_3:71966257-71966276 | None:intergenic | 40.0% | |
| ! | AAACCGATTCCAACTCAGAA+GGG | - | chr3_3:71966440-71966459 | None:intergenic | 40.0% |
| ! | AAAACCGATTCCAACTCAGA+AGG | - | chr3_3:71966441-71966460 | None:intergenic | 40.0% |
| ! | GTACATGAGCTATCTGAAGT+AGG | - | chr3_3:71966848-71966867 | None:intergenic | 40.0% |
| CTCAAATCCGTTAGAACCAA+CGG | - | chr3_3:71967042-71967061 | None:intergenic | 40.0% | |
| TCGAATGACTCCATATGACA+TGG | + | chr3_3:71967178-71967197 | Msa0469920:CDS | 40.0% | |
| CGAATGACTCCATATGACAT+GGG | + | chr3_3:71967179-71967198 | Msa0469920:CDS | 40.0% | |
| ATGCATTGCGCCAAAATACA+GGG | - | chr3_3:71967250-71967269 | None:intergenic | 40.0% | |
| !!! | GGCTTTTTTATGAAGCTCTC+TGG | + | chr3_3:71967352-71967371 | Msa0469920:intron | 40.0% |
| !! | TTTTATGAAGCTCTCTGGAG+CGG | + | chr3_3:71967357-71967376 | Msa0469920:intron | 40.0% |
| TTCTTGCCCCTCATATTGAT+TGG | + | chr3_3:71967498-71967517 | Msa0469920:intron | 40.0% | |
| TGCATAAAGACCTATGATGC+AGG | - | chr3_3:71967758-71967777 | None:intergenic | 40.0% | |
| AATCACTAATCCAGTTCACG+TGG | + | chr3_3:71967819-71967838 | Msa0469920:CDS | 40.0% | |
| ! | GGGTGTTACACACTTTATAG+AGG | - | chr3_3:71968322-71968341 | None:intergenic | 40.0% |
| !! | TGTAACACCCAAGAGTGTTT+GGG | + | chr3_3:71968332-71968351 | Msa0469920:intron | 40.0% |
| CTGTGACTGACTAATTAAGC+AGG | - | chr3_3:71968394-71968413 | None:intergenic | 40.0% | |
| GTGCCCCTCAACAATTATAA+TGG | - | chr3_3:71968456-71968475 | None:intergenic | 40.0% | |
| ! | TTATAATTGTTGAGGGGCAC+TGG | + | chr3_3:71968456-71968475 | Msa0469920:intron | 40.0% |
| ATGGAATTCCTCCATCTATG+AGG | - | chr3_3:71968545-71968564 | None:intergenic | 40.0% | |
| ACTCATCTATTCCTTGTGTG+TGG | + | chr3_3:71968612-71968631 | Msa0469920:intron | 40.0% | |
| AAGAGGAACCAGATAGCATA+TGG | - | chr3_3:71968665-71968684 | None:intergenic | 40.0% | |
| TATGTTTACCGATGGCAAAG+AGG | - | chr3_3:71968682-71968701 | None:intergenic | 40.0% | |
| TAACAGACCTGCAGAATATG+GGG | - | chr3_3:71968921-71968940 | None:intergenic | 40.0% | |
| TTCTGCAGGTCTGTTATTAC+CGG | + | chr3_3:71968925-71968944 | Msa0469920:intron | 40.0% | |
| TCCCAGATGGAAAAAATCTC+AGG | - | chr3_3:71968953-71968972 | None:intergenic | 40.0% | |
| ! | ACCAAAGACAGAGTCTGTTT+TGG | - | chr3_3:71969128-71969147 | None:intergenic | 40.0% |
| AAAACAGACTCTGTCTTTGG+TGG | + | chr3_3:71969127-71969146 | Msa0469920:CDS | 40.0% | |
| CTACACATTGACAGATGACA+AGG | + | chr3_3:71969153-71969172 | Msa0469920:CDS | 40.0% | |
| ATGCGTATCCTCAAAACAGT+AGG | - | chr3_3:71969343-71969362 | None:intergenic | 40.0% | |
| TATTCCCTATCTGGTTAGGT+TGG | + | chr3_3:71969443-71969462 | Msa0469920:intron | 40.0% | |
| CAAATCCAACCTAACCAGAT+AGG | - | chr3_3:71969451-71969470 | None:intergenic | 40.0% | |
| GTTGTGATATAACATAGCCC+TGG | - | chr3_3:71969744-71969763 | None:intergenic | 40.0% | |
| TTGACACGTTTGTGATTCTC+TGG | - | chr3_3:71970127-71970146 | None:intergenic | 40.0% | |
| TCCATGTGGTATAGGTTAAG+AGG | + | chr3_3:71970189-71970208 | Msa0469920:intron | 40.0% | |
| TCCTCTTAACCTATACCACA+TGG | - | chr3_3:71970193-71970212 | None:intergenic | 40.0% | |
| AGGTTAAGAGGAACAACTAC+AGG | + | chr3_3:71970201-71970220 | Msa0469920:intron | 40.0% | |
| GGTTAAGAGGAACAACTACA+GGG | + | chr3_3:71970202-71970221 | Msa0469920:intron | 40.0% | |
| GTTAAGAGGAACAACTACAG+GGG | + | chr3_3:71970203-71970222 | Msa0469920:CDS | 40.0% | |
| TTGATCTCACTTGTCACTAG+TGG | + | chr3_3:71970243-71970262 | Msa0469920:CDS | 40.0% | |
| ACATCTGAAGAGGACATTCT+TGG | + | chr3_3:71970288-71970307 | Msa0469920:CDS | 40.0% | |
| TGTCTTTGTTCCATTTGAGG+AGG | + | chr3_3:71970392-71970411 | Msa0469920:CDS | 40.0% | |
| ! | ATCTCTTTTGAATTTGCCCG+TGG | + | chr3_3:71970660-71970679 | Msa0469920:CDS | 40.0% |
| AATTTGCGTACTTGCATGTG+TGG | + | chr3_3:71970776-71970795 | Msa0469920:three_prime_UTR | 40.0% | |
| ! | AGTTACATAGGAGCACAAAG+CGG | - | chr3_3:71970852-71970871 | None:intergenic | 40.0% |
| ! | GTTTTCGGATTACAACCGTG+TGG | + | chr3_3:71965750-71965769 | Msa0469920:five_prime_UTR | 45.0% |
| AACGTAAGACACCAGAGGTT+TGG | - | chr3_3:71965809-71965828 | None:intergenic | 45.0% | |
| GTATCAACGTAAGACACCAG+AGG | - | chr3_3:71965814-71965833 | None:intergenic | 45.0% | |
| GACACACTTCGACATCAAAC+AGG | - | chr3_3:71966382-71966401 | None:intergenic | 45.0% | |
| TTTAACGGTCCCTTCTGAGT+TGG | + | chr3_3:71966428-71966447 | Msa0469920:CDS | 45.0% | |
| !! | CTGAGTTGGAATCGGTTTTG+AGG | + | chr3_3:71966442-71966461 | Msa0469920:CDS | 45.0% |
| ACTTTGTTACAAGGAGGCCA+TGG | + | chr3_3:71966481-71966500 | Msa0469920:CDS | 45.0% | |
| !! | GTGGGACTAGTTACAATGTG+CGG | + | chr3_3:71966793-71966812 | Msa0469920:intron | 45.0% |
| !! | TGGGACTAGTTACAATGTGC+GGG | + | chr3_3:71966794-71966813 | Msa0469920:intron | 45.0% |
| !! | AGTATTTGGTGCATCACCGT+TGG | + | chr3_3:71967023-71967042 | Msa0469920:intron | 45.0% |
| !! | TGCATCACCGTTGGTTCTAA+CGG | + | chr3_3:71967032-71967051 | Msa0469920:intron | 45.0% |
| ! | GAGGCTTTTCCCATGTCATA+TGG | - | chr3_3:71967191-71967210 | None:intergenic | 45.0% |
| ! | CCATTTTCGACACACACAAG+AGG | - | chr3_3:71967210-71967229 | None:intergenic | 45.0% |
| CCTCTTGTGTGTGTCGAAAA+TGG | + | chr3_3:71967207-71967226 | Msa0469920:CDS | 45.0% | |
| CTTGTGTGTGTCGAAAATGG+CGG | + | chr3_3:71967210-71967229 | Msa0469920:CDS | 45.0% | |
| CATGCATTGCGCCAAAATAC+AGG | - | chr3_3:71967251-71967270 | None:intergenic | 45.0% | |
| CAAAATACGATGGCTCATGG+CGG | + | chr3_3:71967404-71967423 | Msa0469920:CDS | 45.0% | |
| TTACCGTCAAATCGCAACCT+TGG | - | chr3_3:71967448-71967467 | None:intergenic | 45.0% | |
| GGGTCACCAATCAATATGAG+GGG | - | chr3_3:71967507-71967526 | None:intergenic | 45.0% | |
| CGGGTCACCAATCAATATGA+GGG | - | chr3_3:71967508-71967527 | None:intergenic | 45.0% | |
| ACGGGTCACCAATCAATATG+AGG | - | chr3_3:71967509-71967528 | None:intergenic | 45.0% | |
| ! | TATTGATTGGTGACCCGTGA+TGG | + | chr3_3:71967511-71967530 | Msa0469920:intron | 45.0% |
| !! | TTAGTCTTGTGCAGTGGAGA+GGG | - | chr3_3:71967624-71967643 | None:intergenic | 45.0% |
| !! | TTTAGTCTTGTGCAGTGGAG+AGG | - | chr3_3:71967625-71967644 | None:intergenic | 45.0% |
| AGAAATACCTACATCCGGGT+TGG | + | chr3_3:71967781-71967800 | Msa0469920:CDS | 45.0% | |
| TGAATGCATACCACGTGAAC+TGG | - | chr3_3:71967832-71967851 | None:intergenic | 45.0% | |
| !! | GTGTAACACCCAAGAGTGTT+TGG | + | chr3_3:71968331-71968350 | Msa0469920:intron | 45.0% |
| TGACATGCCCAAACACTCTT+GGG | - | chr3_3:71968342-71968361 | None:intergenic | 45.0% | |
| TTGACATGCCCAAACACTCT+TGG | - | chr3_3:71968343-71968362 | None:intergenic | 45.0% | |
| CTATTCCTTGTGTGTGGTGT+TGG | + | chr3_3:71968618-71968637 | Msa0469920:intron | 45.0% | |
| ATCAACCAACACCACACACA+AGG | - | chr3_3:71968626-71968645 | None:intergenic | 45.0% | |
| ! | ATCTGGTTCCTCTTTGCCAT+CGG | + | chr3_3:71968671-71968690 | Msa0469920:intron | 45.0% |
| AATTTCCCCCCATATTCTGC+AGG | + | chr3_3:71968911-71968930 | Msa0469920:intron | 45.0% | |
| AACAGACCTGCAGAATATGG+GGG | - | chr3_3:71968920-71968939 | None:intergenic | 45.0% | |
| GCCAAAACAGACTCTGTCTT+TGG | + | chr3_3:71969124-71969143 | Msa0469920:CDS | 45.0% | |
| !!! | CTGTTTTGAGGATACGCATG+AGG | + | chr3_3:71969344-71969363 | Msa0469920:CDS | 45.0% |
| TGAGGATACGCATGAGGTAA+TGG | + | chr3_3:71969350-71969369 | Msa0469920:intron | 45.0% | |
| TCTCTTAGCAGAGGACATAC+TGG | - | chr3_3:71969479-71969498 | None:intergenic | 45.0% | |
| TAACATAGCCCTGGTAGATG+AGG | - | chr3_3:71969735-71969754 | None:intergenic | 45.0% | |
| CAACTACAGGGGCTAACAAT+AGG | + | chr3_3:71970214-71970233 | Msa0469920:CDS | 45.0% | |
| TACAGGGGCTAACAATAGGA+TGG | + | chr3_3:71970218-71970237 | Msa0469920:CDS | 45.0% | |
| TAGTGGTGTGGACACTAATG+AGG | + | chr3_3:71970260-71970279 | Msa0469920:CDS | 45.0% | |
| TGAGGCAAGTACATCTGAAG+AGG | + | chr3_3:71970278-71970297 | Msa0469920:CDS | 45.0% | |
| GACATTCTTGGAGTCGTTGA+AGG | + | chr3_3:71970300-71970319 | Msa0469920:CDS | 45.0% | |
| TTCTTGGAGTCGTTGAAGGA+TGG | + | chr3_3:71970304-71970323 | Msa0469920:CDS | 45.0% | |
| GAATTTGCCCGTGGAGAAAA+TGG | + | chr3_3:71970669-71970688 | Msa0469920:CDS | 45.0% | |
| !!! | ATTCATATATAATTTTAAAT+AGG | - | chr3_3:71968775-71968794 | None:intergenic | 5.0% |
| TCTGACATGCACATGCCACA+CGG | - | chr3_3:71965768-71965787 | None:intergenic | 50.0% | |
| ATTCCGCGAAACCAAACCTC+TGG | + | chr3_3:71965795-71965814 | Msa0469920:five_prime_UTR | 50.0% | |
| ! | ACACCAGAGGTTTGGTTTCG+CGG | - | chr3_3:71965801-71965820 | None:intergenic | 50.0% |
| TTCCTTTCACTCATGGCGTC+AGG | + | chr3_3:71965919-71965938 | Msa0469920:exon | 50.0% | |
| AACCTGACGCCATGAGTGAA+AGG | - | chr3_3:71965924-71965943 | None:intergenic | 50.0% | |
| ! | GGTCCCTTCTGAGTTGGAAT+CGG | + | chr3_3:71966434-71966453 | Msa0469920:CDS | 50.0% |
| GCGTTGTACATACCAAGCCA+TGG | - | chr3_3:71966501-71966520 | None:intergenic | 50.0% | |
| ACCAGATGAGCTGCTCTTTG+AGG | + | chr3_3:71966710-71966729 | Msa0469920:CDS | 50.0% | |
| ACCTCAAAGAGCAGCTCATC+TGG | - | chr3_3:71966714-71966733 | None:intergenic | 50.0% | |
| TTGGCGCAATGCATGCTTGA+AGG | + | chr3_3:71967256-71967275 | Msa0469920:CDS | 50.0% | |
| TGGCGCAATGCATGCTTGAA+GGG | + | chr3_3:71967257-71967276 | Msa0469920:CDS | 50.0% | |
| GCAATGCATGCTTGAAGGGT+TGG | + | chr3_3:71967261-71967280 | Msa0469920:CDS | 50.0% | |
| TTGGCAGGTAAGGTCAATGG+AGG | + | chr3_3:71967280-71967299 | Msa0469920:intron | 50.0% | |
| ! | ATGGCTCATGGCGGAAAATG+TGG | + | chr3_3:71967413-71967432 | Msa0469920:CDS | 50.0% |
| GGCGGAAAATGTGGCTCTTA+CGG | + | chr3_3:71967422-71967441 | Msa0469920:CDS | 50.0% | |
| AAATGTGGCTCTTACGGCCA+AGG | + | chr3_3:71967428-71967447 | Msa0469920:CDS | 50.0% | |
| TGCTCTTCCCTGCAGAGTAT+AGG | + | chr3_3:71968277-71968296 | Msa0469920:intron | 50.0% | |
| ! | ACACCTTCTGATGAAGGTGC+TGG | - | chr3_3:71968587-71968606 | None:intergenic | 50.0% |
| !! | GTGTGTGGTGTTGGTTGATC+CGG | + | chr3_3:71968627-71968646 | Msa0469920:intron | 50.0% |
| !! | GTGTTGGTTGATCCGGATAG+TGG | + | chr3_3:71968634-71968653 | Msa0469920:intron | 50.0% |
| ACAGACCTGCAGAATATGGG+GGG | - | chr3_3:71968919-71968938 | None:intergenic | 50.0% | |
| AAAACAGTAGGTCGCATGCC+TGG | - | chr3_3:71969331-71969350 | None:intergenic | 50.0% | |
| ! | GCATGCGACCTACTGTTTTG+AGG | + | chr3_3:71969332-71969351 | Msa0469920:CDS | 50.0% |
| CTCACTTGTCACTAGTGGTG+TGG | + | chr3_3:71970248-71970267 | Msa0469920:CDS | 50.0% | |
| ATGTGAGACTGCTGGCACAT+CGG | - | chr3_3:71970352-71970371 | None:intergenic | 50.0% | |
| TGCCAGCAGTCTCACATAAG+AGG | + | chr3_3:71970355-71970374 | Msa0469920:CDS | 50.0% | |
| GCCAGCAGTCTCACATAAGA+GGG | + | chr3_3:71970356-71970375 | Msa0469920:CDS | 50.0% | |
| CCAGCAGTCTCACATAAGAG+GGG | + | chr3_3:71970357-71970376 | Msa0469920:CDS | 50.0% | |
| AATGCTGCCCCTGAAATACC+TGG | + | chr3_3:71970711-71970730 | Msa0469920:exon | 50.0% | |
| TCACTCATGGCGTCAGGTTC+AGG | + | chr3_3:71965925-71965944 | Msa0469920:exon | 55.0% | |
| ! | GAAGAAGGTGCGGATCGAAG+TGG | - | chr3_3:71965971-71965990 | None:intergenic | 55.0% |
| GTTACAAGGAGGCCATGGCT+TGG | + | chr3_3:71966486-71966505 | Msa0469920:CDS | 55.0% | |
| ! | TGCATGCTTGAAGGGTTGGC+AGG | + | chr3_3:71967265-71967284 | Msa0469920:CDS | 55.0% |
| ! | GCTTGAAGGGTTGGCAGGTA+AGG | + | chr3_3:71967270-71967289 | Msa0469920:intron | 55.0% |
| ! | GGGTTGGCAGGTAAGGTCAA+TGG | + | chr3_3:71967277-71967296 | Msa0469920:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | + | chr3_3:71967442-71967461 | Msa0469920:CDS | 55.0% | |
| TGCAACTCCAACCCGGATGT+AGG | - | chr3_3:71967791-71967810 | None:intergenic | 55.0% | |
| TCCACTCTGCAACTCCAACC+CGG | - | chr3_3:71967798-71967817 | None:intergenic | 55.0% | |
| !! | CTTCTGATGAAGGTGCTGGC+TGG | - | chr3_3:71968583-71968602 | None:intergenic | 55.0% |
| CAGCCAGCACCTTCATCAGA+AGG | + | chr3_3:71968581-71968600 | Msa0469920:intron | 55.0% | |
| GAAGCTGCTGTCCTGTATCC+AGG | + | chr3_3:71969310-71969329 | Msa0469920:CDS | 55.0% | |
| TAGGTCGCATGCCTGGATAC+AGG | - | chr3_3:71969324-71969343 | None:intergenic | 55.0% | |
| TGGAGTCGTTGAAGGATGGC+AGG | + | chr3_3:71970308-71970327 | Msa0469920:CDS | 55.0% | |
| TGTGAGACTGCTGGCACATC+GGG | - | chr3_3:71970351-71970370 | None:intergenic | 55.0% | |
| CCCCTCTTATGTGAGACTGC+TGG | - | chr3_3:71970360-71970379 | None:intergenic | 55.0% | |
| TTCAGGGGCAGCATTCAACC+AGG | - | chr3_3:71970706-71970725 | None:intergenic | 55.0% | |
| GTGCGGATCGAAGTGGTGAG+AGG | - | chr3_3:71965964-71965983 | None:intergenic | 60.0% | |
| ! | GTGAGACCTGTCGCGCCTTT+TGG | + | chr3_3:71966636-71966655 | Msa0469920:CDS | 60.0% |
| ! | GCACTTCCAAAAGGCGCGAC+AGG | - | chr3_3:71966645-71966664 | None:intergenic | 60.0% |
| ! | TCCGGGTTGGAGTTGCAGAG+TGG | + | chr3_3:71967794-71967813 | Msa0469920:CDS | 60.0% |
| GTGAGACTGCTGGCACATCG+GGG | - | chr3_3:71970350-71970369 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71965730 | 71971054 | 71965730 | ID=Msa0469920;Name=Msa0469920 |
| chr3_3 | mRNA | 71965730 | 71971054 | 71965730 | ID=Msa0469920-mRNA-1;Parent=Msa0469920;Name=Msa0469920-mRNA-1;_AED=0.22;_eAED=0.22;_QI=201|1|1|1|1|1|11|343|329 |
| chr3_3 | exon | 71965730 | 71965946 | 71965730 | ID=Msa0469920-mRNA-1:exon:17734;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71966421 | 71966507 | 71966421 | ID=Msa0469920-mRNA-1:exon:17735;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71966619 | 71966731 | 71966619 | ID=Msa0469920-mRNA-1:exon:17736;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71967170 | 71967286 | 71967170 | ID=Msa0469920-mRNA-1:exon:17737;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71967367 | 71967463 | 71967367 | ID=Msa0469920-mRNA-1:exon:17738;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71967767 | 71967840 | 71967767 | ID=Msa0469920-mRNA-1:exon:17739;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71968933 | 71968986 | 71968933 | ID=Msa0469920-mRNA-1:exon:17740;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71969073 | 71969174 | 71969073 | ID=Msa0469920-mRNA-1:exon:17741;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71969307 | 71969365 | 71969307 | ID=Msa0469920-mRNA-1:exon:17742;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71970203 | 71970413 | 71970203 | ID=Msa0469920-mRNA-1:exon:17743;Parent=Msa0469920-mRNA-1 |
| chr3_3 | exon | 71970652 | 71971054 | 71970652 | ID=Msa0469920-mRNA-1:exon:17744;Parent=Msa0469920-mRNA-1 |
| chr3_3 | five_prime_UTR | 71965730 | 71965930 | 71965730 | ID=Msa0469920-mRNA-1:five_prime_utr;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71965931 | 71965946 | 71965931 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71966421 | 71966507 | 71966421 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71966619 | 71966731 | 71966619 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71967170 | 71967286 | 71967170 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71967367 | 71967463 | 71967367 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71967767 | 71967840 | 71967767 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71968933 | 71968986 | 71968933 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71969073 | 71969174 | 71969073 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71969307 | 71969365 | 71969307 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71970203 | 71970413 | 71970203 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | CDS | 71970652 | 71970711 | 71970652 | ID=Msa0469920-mRNA-1:cds;Parent=Msa0469920-mRNA-1 |
| chr3_3 | three_prime_UTR | 71970712 | 71971054 | 71970712 | ID=Msa0469920-mRNA-1:three_prime_utr;Parent=Msa0469920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
