Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374530 | XP_003602065.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374530 | sp|Q9XI00|SKI32_ARATH | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374530 | B7FL96 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0237320 | Msa0374530 | 0.809481 | 1.852662e-50 | -8.615850e-47 |
| Msa0374360 | Msa0374530 | 0.864894 | 8.751848e-65 | -8.615850e-47 |
| Msa0374440 | Msa0374530 | 0.992093 | 2.883583e-191 | -8.615850e-47 |
| Msa0374530 | Msa0374570 | 0.989541 | 1.439861e-178 | -8.615850e-47 |
| Msa0374530 | Msa0439980 | 0.828055 | 1.111877e-54 | -8.615850e-47 |
| Msa0374530 | Msa0469920 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0374530 | Msa0525370 | 0.803352 | 3.631682e-49 | -8.615850e-47 |
| Msa0374530 | Msa0527740 | 0.807241 | 5.563778e-50 | -8.615850e-47 |
| Msa0274740 | Msa0374530 | 0.809195 | 2.133635e-50 | -8.615850e-47 |
| Msa0315540 | Msa0374530 | 0.808657 | 2.780955e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374530 | MtrunA17_Chr3g0124891 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Msa0374530 | MtrunA17_Chr4g0034401 | 98.182 | 55 | 1 | 0 | 20 | 74 | 17 | 71 | 7.13e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374530 | AT1G21760.1 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Msa0374530 | AT1G21760.2 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
Find 108 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGAACCAGGTATTTC+AGG | 0.219347 | 3_1:-73999100 | None:intergenic |
| CAATTCGTAACCCTGTATTT+TGG | 0.228001 | 3_1:+73995617 | Msa0374530:CDS |
| GTGAGACCTGTCGCGCCTTT+TGG | 0.256079 | 3_1:+73995016 | Msa0374530:CDS |
| GAATTTGCCCGTGGAGAAAA+TGG | 0.273613 | 3_1:+73999049 | Msa0374530:CDS |
| CTTTGTCTTTGTTCCATTTG+AGG | 0.303655 | 3_1:+73998769 | Msa0374530:CDS |
| TCACTCATGGCGTCAGGTTC+AGG | 0.314341 | 3_1:+73994302 | Msa0374530:exon |
| TGTGAGACTGCTGGCACATC+GGG | 0.330474 | 3_1:-73998728 | None:intergenic |
| CCTCTTGTGTGTGTCGAAAA+TGG | 0.348503 | 3_1:+73995587 | Msa0374530:CDS |
| AAAATGGATTATTATGTTCC+TGG | 0.362832 | 3_1:+73999065 | Msa0374530:CDS |
| GCCAAAACAGACTCTGTCTT+TGG | 0.364430 | 3_1:+73997504 | Msa0374530:CDS |
| TTCTGCAGGTCTGTTATTAC+CGG | 0.373358 | 3_1:+73997305 | Msa0374530:intron |
| TGAATGCATACCACGTGAAC+TGG | 0.384411 | 3_1:-73996209 | None:intergenic |
| CATGCATTGCGCCAAAATAC+AGG | 0.392919 | 3_1:-73995628 | None:intergenic |
| ACCAGATGAGCTGCTCTTTG+AGG | 0.392938 | 3_1:+73995090 | Msa0374530:CDS |
| AGTTAAACACATGATTTGTA+TGG | 0.399824 | 3_1:-73999354 | None:intergenic |
| TATAAATATCGAAAGTTATG+AGG | 0.402100 | 3_1:-73999128 | None:intergenic |
| ACCAAAGACAGAGTCTGTTT+TGG | 0.404539 | 3_1:-73997505 | None:intergenic |
| TTCCTTTCACTCATGGCGTC+AGG | 0.406079 | 3_1:+73994296 | Msa0374530:exon |
| ACATCTGAAGAGGACATTCT+TGG | 0.408711 | 3_1:+73998668 | Msa0374530:CDS |
| ACCTCAAAGAGCAGCTCATC+TGG | 0.409773 | 3_1:-73995091 | None:intergenic |
| CGGCCAAGGTTGCGATTTGA+CGG | 0.413839 | 3_1:+73995822 | Msa0374530:CDS |
| AACGTTAGACACCAGAGGTT+TGG | 0.415161 | 3_1:-73994183 | None:intergenic |
| TAAAACTGTACCTCCTCAAA+TGG | 0.415424 | 3_1:-73998782 | None:intergenic |
| GGCGGAAAATGTGGCTCTTA+CGG | 0.415806 | 3_1:+73995802 | Msa0374530:CDS |
| CCTCAATTTCCTTTCACTCA+TGG | 0.417964 | 3_1:+73994289 | Msa0374530:exon |
| CAACTACAGGGGCTAACAAT+AGG | 0.418268 | 3_1:+73998594 | Msa0374530:CDS |
| CTGTTAACTACTTTGTTACA+AGG | 0.425322 | 3_1:+73994852 | Msa0374530:CDS |
| ACACCAGAGGTTTGGTTTCG+CGG | 0.432398 | 3_1:-73994175 | None:intergenic |
| GAAGCTGCTGTCCTGTATCC+AGG | 0.445399 | 3_1:+73997690 | Msa0374530:CDS |
| ATCTGGGAAGTTTCTTTACA+AGG | 0.447611 | 3_1:+73997345 | Msa0374530:CDS |
| AGCAGAACAAAAGATAAATT+CGG | 0.448603 | 3_1:-73999211 | None:intergenic |
| CAATTGAACCAGGTATTTCA+GGG | 0.451234 | 3_1:-73999099 | None:intergenic |
| TGCCAGCAGTCTCACATAAG+AGG | 0.453131 | 3_1:+73998735 | Msa0374530:CDS |
| CAAGTAGAAATACCTACATC+CGG | 0.465192 | 3_1:+73996156 | Msa0374530:CDS |
| TCCATGTGGTATAGGTTAAG+AGG | 0.465451 | 3_1:+73998569 | Msa0374530:intron |
| TTGGCGCAATGCATGCTTGA+AGG | 0.473896 | 3_1:+73995636 | Msa0374530:CDS |
| AGGTTAAGAGGAACAACTAC+AGG | 0.479419 | 3_1:+73998581 | Msa0374530:intron |
| GGTCCCTTCTGAGTTGGAAT+CGG | 0.480778 | 3_1:+73994814 | Msa0374530:CDS |
| TTTCTACTTGCACTTCCAAA+AGG | 0.482993 | 3_1:-73995031 | None:intergenic |
| GCACTTCCAAAAGGCGCGAC+AGG | 0.483438 | 3_1:-73995022 | None:intergenic |
| GACATTCTTGGAGTCGTTGA+AGG | 0.484136 | 3_1:+73998680 | Msa0374530:CDS |
| AAAACAGTAGGTCGCATGCC+TGG | 0.485790 | 3_1:-73997708 | None:intergenic |
| ATGTGAGACTGCTGGCACAT+CGG | 0.486579 | 3_1:-73998729 | None:intergenic |
| TGCATGCTTGAAGGGTTGGC+AGG | 0.501973 | 3_1:+73995645 | Msa0374530:CDS |
| GGTTGTAATCCGAAAACATT+GGG | 0.515132 | 3_1:-73994121 | None:intergenic |
| TGGAGTCGTTGAAGGATGGC+AGG | 0.521728 | 3_1:+73998688 | Msa0374530:CDS |
| TAGGTCGCATGCCTGGATAC+AGG | 0.528585 | 3_1:-73997701 | None:intergenic |
| GCAATGCATGCTTGAAGGGT+TGG | 0.533926 | 3_1:+73995641 | Msa0374530:CDS |
| TTTAACGGTCCCTTCTGAGT+TGG | 0.534181 | 3_1:+73994808 | Msa0374530:CDS |
| TTGATCTCACTTGTCACTAG+TGG | 0.534671 | 3_1:+73998623 | Msa0374530:CDS |
| TCCACTCTGCAACTCCAACC+CGG | 0.540341 | 3_1:-73996175 | None:intergenic |
| TGGCGCAATGCATGCTTGAA+GGG | 0.540704 | 3_1:+73995637 | Msa0374530:CDS |
| TTCTTGGAGTCGTTGAAGGA+TGG | 0.542284 | 3_1:+73998684 | Msa0374530:CDS |
| CCCCTCTTATGTGAGACTGC+TGG | 0.544075 | 3_1:-73998737 | None:intergenic |
| TGTCTTTGTTCCATTTGAGG+AGG | 0.547210 | 3_1:+73998772 | Msa0374530:CDS |
| ATTCCGCGAAACCAAACCTC+TGG | 0.551803 | 3_1:+73994172 | Msa0374530:five_prime_UTR |
| GCCAGCAGTCTCACATAAGA+GGG | 0.555369 | 3_1:+73998736 | Msa0374530:CDS |
| AAATGTGGCTCTTACGGCCA+AGG | 0.555691 | 3_1:+73995808 | Msa0374530:CDS |
| TCAAATGGAACAAAGACAAA+GGG | 0.558084 | 3_1:-73998767 | None:intergenic |
| AAAACAGACTCTGTCTTTGG+TGG | 0.559204 | 3_1:+73997507 | Msa0374530:CDS |
| AACCTGACGCCATGAGTGAA+AGG | 0.560053 | 3_1:-73994298 | None:intergenic |
| GTTACAAGGAGGCCATGGCT+TGG | 0.560559 | 3_1:+73994866 | Msa0374530:CDS |
| AATCAAAATACGATGGCTCA+TGG | 0.565621 | 3_1:+73995781 | Msa0374530:CDS |
| AATTTGCGTACTTGCATGCG+TGG | 0.567773 | 3_1:+73999156 | Msa0374530:three_prime_UTR |
| TGAAAGGAAATTGAGGTGAA+AGG | 0.571755 | 3_1:-73994282 | None:intergenic |
| ACTTTGTTACAAGGAGGCCA+TGG | 0.571990 | 3_1:+73994861 | Msa0374530:CDS |
| TTGTAAAGAAACTTCCCAGA+TGG | 0.574995 | 3_1:-73997343 | None:intergenic |
| CCATGAGTGAAAGGAAATTG+AGG | 0.575708 | 3_1:-73994289 | None:intergenic |
| CTCAAATGGAACAAAGACAA+AGG | 0.580041 | 3_1:-73998768 | None:intergenic |
| TGCAACTCCAACCCGGATGT+AGG | 0.586345 | 3_1:-73996168 | None:intergenic |
| ATGGCTCATGGCGGAAAATG+TGG | 0.589306 | 3_1:+73995793 | Msa0374530:CDS |
| TACAGGGGCTAACAATAGGA+TGG | 0.594300 | 3_1:+73998598 | Msa0374530:CDS |
| TTACCGTCAAATCGCAACCT+TGG | 0.595041 | 3_1:-73995825 | None:intergenic |
| TAATTAAAGGTACTGTAGTA+CGG | 0.597623 | 3_1:+73994096 | None:intergenic |
| AAACCGATTCCAACTCAGAA+GGG | 0.600214 | 3_1:-73994817 | None:intergenic |
| TCGAATGACTCCATATGACA+TGG | 0.601277 | 3_1:+73995558 | Msa0374530:CDS |
| AATGAAATGATTCAGAATCA+CGG | 0.603878 | 3_1:-73994259 | None:intergenic |
| AGAAATACCTACATCCGGGT+TGG | 0.606217 | 3_1:+73996161 | Msa0374530:CDS |
| GGTTAAGAGGAACAACTACA+GGG | 0.606446 | 3_1:+73998582 | Msa0374530:intron |
| TTCAGGGGCATCATTCAACC+AGG | 0.608305 | 3_1:-73999083 | None:intergenic |
| TTCTCAAAAGATCAAAGATG+TGG | 0.608842 | 3_1:+73997458 | Msa0374530:CDS |
| CTACACATTGACAGATGACA+AGG | 0.608992 | 3_1:+73997533 | Msa0374530:CDS |
| TGAGGCAAGTACATCTGAAG+AGG | 0.609172 | 3_1:+73998658 | Msa0374530:CDS |
| AAAACCGATTCCAACTCAGA+AGG | 0.609545 | 3_1:-73994818 | None:intergenic |
| TAGTGGTGTGGACACTAATG+AGG | 0.610301 | 3_1:+73998640 | Msa0374530:CDS |
| ATGCGTATCCTCAAAACAGT+AGG | 0.614318 | 3_1:-73997720 | None:intergenic |
| ATGCATTGCGCCAAAATACA+GGG | 0.615006 | 3_1:-73995627 | None:intergenic |
| GAGGTATTTACAATTGAACC+AGG | 0.615601 | 3_1:-73999109 | None:intergenic |
| CTCACTTGTCACTAGTGGTG+TGG | 0.615722 | 3_1:+73998628 | Msa0374530:CDS |
| CGGTTGTAATCCGAAAACAT+TGG | 0.624551 | 3_1:-73994122 | None:intergenic |
| TTTGGTTAAAGATCTTTATG+GGG | 0.625965 | 3_1:+73994988 | Msa0374530:intron |
| AATGATGCCCCTGAAATACC+TGG | 0.630188 | 3_1:+73999091 | Msa0374530:exon |
| AAGTAGAAATACCTACATCC+GGG | 0.640220 | 3_1:+73996157 | Msa0374530:CDS |
| AATTGAACCAGGTATTTCAG+GGG | 0.642992 | 3_1:-73999098 | None:intergenic |
| CGAATGACTCCATATGACAT+GGG | 0.647091 | 3_1:+73995559 | Msa0374530:CDS |
| ATACTTCAATCAAAATACGA+TGG | 0.652918 | 3_1:+73995774 | Msa0374530:CDS |
| GCGTTGTACATACCAAGCCA+TGG | 0.657436 | 3_1:-73994878 | None:intergenic |
| TTAACTACTTTGTTACAAGG+AGG | 0.664306 | 3_1:+73994855 | Msa0374530:CDS |
| AAAAGAGAAGAATCAACATG+AGG | 0.664765 | 3_1:-73995055 | None:intergenic |
| TCTGACATGCACATGCCACA+CGG | 0.673940 | 3_1:-73994142 | None:intergenic |
| TCCGGGTTGGAGTTGCAGAG+TGG | 0.680422 | 3_1:+73996174 | Msa0374530:CDS |
| AATCACTAATCCAGTTCACG+TGG | 0.691915 | 3_1:+73996199 | Msa0374530:CDS |
| GTATCAACGTTAGACACCAG+AGG | 0.695810 | 3_1:-73994188 | None:intergenic |
| CCAGCAGTCTCACATAAGAG+GGG | 0.706035 | 3_1:+73998737 | Msa0374530:CDS |
| CAAAATACGATGGCTCATGG+CGG | 0.731935 | 3_1:+73995784 | Msa0374530:CDS |
| GTTAAGAGGAACAACTACAG+GGG | 0.746465 | 3_1:+73998583 | Msa0374530:CDS |
| GTGAGACTGCTGGCACATCG+GGG | 0.755204 | 3_1:-73998727 | None:intergenic |
| CTTGTGTGTGTCGAAAATGG+CGG | 0.757415 | 3_1:+73995590 | Msa0374530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAAATCAGA+TGG | + | chr3_1:73994732-73994751 | Msa0374530:intron | 10.0% |
| !!! | ATTCAAATCTTTAAAATCTT+TGG | + | chr3_1:73994414-73994433 | Msa0374530:intron | 15.0% |
| !!! | AATTTTCAACAATTTTAACA+TGG | + | chr3_1:73994457-73994476 | Msa0374530:intron | 15.0% |
| !!! | ATTTTCAACAATTTTAACAT+GGG | + | chr3_1:73994458-73994477 | Msa0374530:intron | 15.0% |
| !!! | TAAATTAATAATTTTGAGAC+CGG | + | chr3_1:73994497-73994516 | Msa0374530:intron | 15.0% |
| !! | TATTATTAATTAAGATGACA+CGG | - | chr3_1:73994716-73994735 | None:intergenic | 15.0% |
| !! | AACACAATAATAAATAAACA+TGG | - | chr3_1:73994909-73994928 | None:intergenic | 15.0% |
| !!! | TAAAAATAATATTCTGAAAG+TGG | + | chr3_1:73996021-73996040 | Msa0374530:intron | 15.0% |
| !! | GATATTAAATTGATAAATAG+TGG | - | chr3_1:73996345-73996364 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAAAA+AGG | + | chr3_1:73996450-73996469 | Msa0374530:intron | 15.0% |
| !!! | ATTTTAAAGCCTTTTTTTTT+AGG | - | chr3_1:73996462-73996481 | None:intergenic | 15.0% |
| !!! | TTCTTTCTAGAAAAAAATAT+TGG | + | chr3_1:73997605-73997624 | Msa0374530:intron | 15.0% |
| !!! | TCTTTCTAGAAAAAAATATT+GGG | + | chr3_1:73997606-73997625 | Msa0374530:intron | 15.0% |
| !! | GCATTATTTAAATCTATATA+CGG | + | chr3_1:73997628-73997647 | Msa0374530:intron | 15.0% |
| !! | AATTTACATGTGATATTATT+TGG | - | chr3_1:73998085-73998104 | None:intergenic | 15.0% |
| !!! | AATCATATATCCTTTATTTT+TGG | + | chr3_1:73999393-73999412 | Msa0374530:three_prime_UTR | 15.0% |
| !!! | TTTTCAAATTCCAAAAATAA+AGG | - | chr3_1:73999406-73999425 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAACAATGAAGA+AGG | - | chr3_1:73994363-73994382 | None:intergenic | 20.0% |
| !! | GCATATTACATAAATGAAAT+TGG | + | chr3_1:73994597-73994616 | Msa0374530:intron | 20.0% |
| !!! | CTTATTGTTTTTATGTGTTT+TGG | + | chr3_1:73994970-73994989 | Msa0374530:intron | 20.0% |
| !!! | TTTTGGTTAAAGATCTTTAT+GGG | + | chr3_1:73994987-73995006 | Msa0374530:intron | 20.0% |
| !!! | ATTTATTGAATACATTTTGC+AGG | + | chr3_1:73995528-73995547 | Msa0374530:intron | 20.0% |
| !! | AATAAAAAACTTAACCATCA+CGG | - | chr3_1:73995908-73995927 | None:intergenic | 20.0% |
| !! | TGGAAATTTATCGTATTTAA+AGG | + | chr3_1:73995949-73995968 | Msa0374530:intron | 20.0% |
| !! | AGACTAACAGAATTTAAAAA+AGG | - | chr3_1:73996270-73996289 | None:intergenic | 20.0% |
| !! | AATTGTAGTATTTGAATAGA+GGG | + | chr3_1:73996797-73996816 | Msa0374530:intron | 20.0% |
| !! | AACAATTATAATGGTTAACA+AGG | - | chr3_1:73996828-73996847 | None:intergenic | 20.0% |
| !! | TTAACCATTATAATTGTTGA+GGG | + | chr3_1:73996830-73996849 | Msa0374530:intron | 20.0% |
| !! | TTATTCATATGCTTAAAGAT+TGG | - | chr3_1:73997196-73997215 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGGTTATAATT+TGG | + | chr3_1:73997356-73997375 | Msa0374530:intron | 20.0% |
| !! | TCATTATTTGTATATCTACT+AGG | + | chr3_1:73997579-73997598 | Msa0374530:intron | 20.0% |
| !! | AGAATTATGTATTATTAGTG+AGG | + | chr3_1:73997916-73997935 | Msa0374530:intron | 20.0% |
| !! | TCACTTAATATAAGTTAGAA+TGG | + | chr3_1:73998165-73998184 | Msa0374530:intron | 20.0% |
| !!! | ATTTTTTTAGCTTACAGAAA+AGG | - | chr3_1:73998443-73998462 | None:intergenic | 20.0% |
| !! | AACAAATTGAGACAATATTT+AGG | - | chr3_1:73998857-73998876 | None:intergenic | 20.0% |
| !!! | CTATAGTATTTTTCTATTTG+AGG | + | chr3_1:73998906-73998925 | Msa0374530:intron | 20.0% |
| !! | TATAAATATCGAAAGTTATG+AGG | - | chr3_1:73999131-73999150 | None:intergenic | 20.0% |
| ! | AATGAAATGATTCAGAATCA+CGG | - | chr3_1:73994262-73994281 | None:intergenic | 25.0% |
| !!! | AACATGGGTTTTAAATTTGT+TGG | + | chr3_1:73994473-73994492 | Msa0374530:intron | 25.0% |
| !!! | ACATGGGTTTTAAATTTGTT+GGG | + | chr3_1:73994474-73994493 | Msa0374530:intron | 25.0% |
| !! | GTTTGTAGATTTTGCTTTAA+CGG | + | chr3_1:73994793-73994812 | Msa0374530:intron | 25.0% |
| !!! | GTTTTGGTTAAAGATCTTTA+TGG | + | chr3_1:73994986-73995005 | Msa0374530:intron | 25.0% |
| ! | TTTGGTTAAAGATCTTTATG+GGG | + | chr3_1:73994988-73995007 | Msa0374530:intron | 25.0% |
| ! | ATGTATGTAACTACACTATT+TGG | + | chr3_1:73995129-73995148 | Msa0374530:intron | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | + | chr3_1:73995317-73995336 | Msa0374530:intron | 25.0% |
| ! | CTGTTCTTAAAATAAGAATC+AGG | + | chr3_1:73995450-73995469 | Msa0374530:intron | 25.0% |
| ! | ATAAGAATCAGGAAAGTTTA+TGG | + | chr3_1:73995461-73995480 | Msa0374530:intron | 25.0% |
| ! | CAAGTCTAATTTCTGATTAT+GGG | + | chr3_1:73995710-73995729 | Msa0374530:intron | 25.0% |
| ! | AAGTCTAATTTCTGATTATG+GGG | + | chr3_1:73995711-73995730 | Msa0374530:intron | 25.0% |
| ! | ATACTTCAATCAAAATACGA+TGG | + | chr3_1:73995774-73995793 | Msa0374530:CDS | 25.0% |
| ! | ATAAAAAACTTAACCATCAC+GGG | - | chr3_1:73995907-73995926 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAGAACAGAAA+AGG | - | chr3_1:73996090-73996109 | None:intergenic | 25.0% |
| !!! | TATGCCAATTAGTCTTATTA+TGG | + | chr3_1:73996111-73996130 | Msa0374530:intron | 25.0% |
| ! | GAAAACCTCATGAATTAAAA+AGG | + | chr3_1:73996532-73996551 | Msa0374530:intron | 25.0% |
| ! | TCATGCTGAAAATGAATTTA+AGG | + | chr3_1:73996571-73996590 | Msa0374530:intron | 25.0% |
| ! | GAATTGTAGTATTTGAATAG+AGG | + | chr3_1:73996796-73996815 | Msa0374530:intron | 25.0% |
| ! | GTTAACCATTATAATTGTTG+AGG | + | chr3_1:73996829-73996848 | Msa0374530:intron | 25.0% |
| ! | TAACCATTATAATTGTTGAG+GGG | + | chr3_1:73996831-73996850 | Msa0374530:intron | 25.0% |
| ! | TGTAAATTTATGTTTACCGA+TGG | - | chr3_1:73997071-73997090 | None:intergenic | 25.0% |
| ! | TCGGTAAACATAAATTTACA+AGG | + | chr3_1:73997071-73997090 | Msa0374530:intron | 25.0% |
| !! | TGTTAACTTAACCTTTTAAC+AGG | - | chr3_1:73997779-73997798 | None:intergenic | 25.0% |
| ! | AAACTAATATTTAGCACAAG+TGG | + | chr3_1:73998467-73998486 | Msa0374530:intron | 25.0% |
| ! | ATATATAAGCATAGTGCAAA+AGG | - | chr3_1:73998546-73998565 | None:intergenic | 25.0% |
| ! | ACAAAAAGGCAAAAATGTAA+GGG | - | chr3_1:73999008-73999027 | None:intergenic | 25.0% |
| ! | TACAAAAAGGCAAAAATGTA+AGG | - | chr3_1:73999009-73999028 | None:intergenic | 25.0% |
| !! | ACATTTTTGCCTTTTTGTAT+AGG | + | chr3_1:73999010-73999029 | Msa0374530:intron | 25.0% |
| !! | ATAATAATCCATTTTCTCCA+CGG | - | chr3_1:73999060-73999079 | None:intergenic | 25.0% |
| !!! | AAAATGGATTATTATGTTCC+TGG | + | chr3_1:73999065-73999084 | Msa0374530:CDS | 25.0% |
| ! | AGCAGAACAAAAGATAAATT+CGG | - | chr3_1:73999214-73999233 | None:intergenic | 25.0% |
| ! | CTCCTATGTAACTATAAAAA+CGG | + | chr3_1:73999239-73999258 | Msa0374530:three_prime_UTR | 25.0% |
| !!! | AACCGTTTTTATAGTTACAT+AGG | - | chr3_1:73999244-73999263 | None:intergenic | 25.0% |
| ! | ATAAAAACGGTTTGTACATA+AGG | + | chr3_1:73999252-73999271 | Msa0374530:three_prime_UTR | 25.0% |
| ! | TAAAAACGGTTTGTACATAA+GGG | + | chr3_1:73999253-73999272 | Msa0374530:three_prime_UTR | 25.0% |
| !! | AGTTAAACACATGATTTGTA+TGG | - | chr3_1:73999357-73999376 | None:intergenic | 25.0% |
| ACAATTAGCGCAATAATAGA+TGG | - | chr3_1:73994393-73994412 | None:intergenic | 30.0% | |
| TTCAGCTGAATATTCATTTG+AGG | + | chr3_1:73994524-73994543 | Msa0374530:intron | 30.0% | |
| ATTGGAAAGATTATGTCCAT+AGG | + | chr3_1:73994615-73994634 | Msa0374530:intron | 30.0% | |
| AGAATTTGAACTATGTCACA+AGG | - | chr3_1:73994667-73994686 | None:intergenic | 30.0% | |
| CTGTTAACTACTTTGTTACA+AGG | + | chr3_1:73994852-73994871 | Msa0374530:CDS | 30.0% | |
| TTAACTACTTTGTTACAAGG+AGG | + | chr3_1:73994855-73994874 | Msa0374530:CDS | 30.0% | |
| AAAAGAGAAGAATCAACATG+AGG | - | chr3_1:73995058-73995077 | None:intergenic | 30.0% | |
| !!! | TGGTCATGACTTTTTTGATA+TGG | + | chr3_1:73995149-73995168 | Msa0374530:intron | 30.0% |
| !!! | ATGACTTTTTTGATATGGTG+TGG | + | chr3_1:73995154-73995173 | Msa0374530:intron | 30.0% |
| !!! | TGACTTTTTTGATATGGTGT+GGG | + | chr3_1:73995155-73995174 | Msa0374530:intron | 30.0% |
| TCATGTACGATATTTGATGT+GGG | + | chr3_1:73995240-73995259 | Msa0374530:intron | 30.0% | |
| ATATTTGATGTGGGTATGTT+TGG | + | chr3_1:73995249-73995268 | Msa0374530:intron | 30.0% | |
| ! | TTAAGTTTCAAGTGTACGAA+GGG | - | chr3_1:73995313-73995332 | None:intergenic | 30.0% |
| ! | TTTAAGTTTCAAGTGTACGA+AGG | - | chr3_1:73995314-73995333 | None:intergenic | 30.0% |
| CACAACTTATTGACAGTATT+TGG | + | chr3_1:73995389-73995408 | Msa0374530:intron | 30.0% | |
| GCAAGTCTAATTTCTGATTA+TGG | + | chr3_1:73995709-73995728 | Msa0374530:intron | 30.0% | |
| TAGTTGAAACAAATGCTGTA+TGG | + | chr3_1:73995929-73995948 | Msa0374530:intron | 30.0% | |
| !!! | TTATTTTTAGTCTTGTGCAG+TGG | - | chr3_1:73996010-73996029 | None:intergenic | 30.0% |
| AGGACCATAATAAGACTAAT+TGG | - | chr3_1:73996118-73996137 | None:intergenic | 30.0% | |
| AAGGATATCTATTTCGTAGT+AGG | - | chr3_1:73996251-73996270 | None:intergenic | 30.0% | |
| TTCATTGTTAGATCTGCATT+CGG | + | chr3_1:73996293-73996312 | Msa0374530:intron | 30.0% | |
| !!! | GATCAGAAACTAGTTTTATG+AGG | + | chr3_1:73996402-73996421 | Msa0374530:intron | 30.0% |
| ! | ATTGTTTTCATGCAAACACT+AGG | + | chr3_1:73996480-73996499 | Msa0374530:intron | 30.0% |
| ! | TTGTTTTCATGCAAACACTA+GGG | + | chr3_1:73996481-73996500 | Msa0374530:intron | 30.0% |
| !! | CAGATCCTTTTTAATTCATG+AGG | - | chr3_1:73996540-73996559 | None:intergenic | 30.0% |
| ! | TTATTTTCCTATACTCTGCA+GGG | - | chr3_1:73996668-73996687 | None:intergenic | 30.0% |
| TTGTATTGTCCTTGATATAG+CGG | + | chr3_1:73996868-73996887 | Msa0374530:intron | 30.0% | |
| GAGGAATTCCATGTAAAAAT+TGG | + | chr3_1:73996934-73996953 | Msa0374530:intron | 30.0% | |
| ! | CTGGAAAACCAATTTTTACA+TGG | - | chr3_1:73996945-73996964 | None:intergenic | 30.0% |
| ! | TTCATCTAAGCATTGCATTT+AGG | + | chr3_1:73997116-73997135 | Msa0374530:intron | 30.0% |
| TACTTCACAAGATTTACTCA+TGG | - | chr3_1:73997237-73997256 | None:intergenic | 30.0% | |
| TTCTCAAAAGATCAAAGATG+TGG | + | chr3_1:73997458-73997477 | Msa0374530:CDS | 30.0% | |
| AAATCTATATACGGATCTTG+AGG | + | chr3_1:73997637-73997656 | Msa0374530:intron | 30.0% | |
| TTTAACAGGATATGCTATCA+AGG | - | chr3_1:73997765-73997784 | None:intergenic | 30.0% | |
| TGATAGCATATCCTGTTAAA+AGG | + | chr3_1:73997765-73997784 | Msa0374530:intron | 30.0% | |
| ! | GGAATACAAAGTTTCTTTTC+TGG | - | chr3_1:73997809-73997828 | None:intergenic | 30.0% |
| ! | AGGAACAATTACCATTTTGT+TGG | + | chr3_1:73997958-73997977 | Msa0374530:intron | 30.0% |
| ! | ACAATTACCATTTTGTTGGT+TGG | + | chr3_1:73997962-73997981 | Msa0374530:intron | 30.0% |
| !!! | ATTTTGTAGACTTGTTAAGG+TGG | - | chr3_1:73998146-73998165 | None:intergenic | 30.0% |
| !!! | GTGATTTTGTAGACTTGTTA+AGG | - | chr3_1:73998149-73998168 | None:intergenic | 30.0% |
| AAGTGATGTAAGATAGAGAA+GGG | - | chr3_1:73998224-73998243 | None:intergenic | 30.0% | |
| TAAGTGATGTAAGATAGAGA+AGG | - | chr3_1:73998225-73998244 | None:intergenic | 30.0% | |
| !!! | ACGCAATCAAAACTTTTTCA+CGG | - | chr3_1:73998265-73998284 | None:intergenic | 30.0% |
| AACAGTTGTGTACTTAAGAA+TGG | + | chr3_1:73998292-73998311 | Msa0374530:intron | 30.0% | |
| ATGTAGGTAGAATTTGAACA+AGG | + | chr3_1:73998356-73998375 | Msa0374530:intron | 30.0% | |
| ! | AAGGAAAGTATGCAGTTTAT+TGG | + | chr3_1:73998375-73998394 | Msa0374530:intron | 30.0% |
| TGATTCTCTGGTCTAATATT+TGG | - | chr3_1:73998495-73998514 | None:intergenic | 30.0% | |
| CAAACGTGTCAAAAAAGAAT+TGG | + | chr3_1:73998515-73998534 | Msa0374530:intron | 30.0% | |
| TGCTTATATATATCTCCATG+TGG | + | chr3_1:73998555-73998574 | Msa0374530:intron | 30.0% | |
| TATATATCTCCATGTGGTAT+AGG | + | chr3_1:73998561-73998580 | Msa0374530:intron | 30.0% | |
| TCAAATGGAACAAAGACAAA+GGG | - | chr3_1:73998770-73998789 | None:intergenic | 30.0% | |
| CAAAAAGGCAAAAATGTAAG+GGG | - | chr3_1:73999007-73999026 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTTTTGTATAGG+TGG | + | chr3_1:73999013-73999032 | Msa0374530:intron | 30.0% |
| ! | TAATAATCCATTTTCTCCAC+GGG | - | chr3_1:73999059-73999078 | None:intergenic | 30.0% |
| GGTTGTAATCCGAAAACATT+GGG | - | chr3_1:73994124-73994143 | None:intergenic | 35.0% | |
| TGAAAGGAAATTGAGGTGAA+AGG | - | chr3_1:73994285-73994304 | None:intergenic | 35.0% | |
| CTAAAACAATGAAGAAGGTG+CGG | - | chr3_1:73994358-73994377 | None:intergenic | 35.0% | |
| AGTTCAAATTCTCTCCTAGA+CGG | + | chr3_1:73994675-73994694 | Msa0374530:intron | 35.0% | |
| ! | TCATCATTTTACAACCGTCT+AGG | - | chr3_1:73994692-73994711 | None:intergenic | 35.0% |
| TTTCTACTTGCACTTCCAAA+AGG | - | chr3_1:73995034-73995053 | None:intergenic | 35.0% | |
| CTCATGTACGATATTTGATG+TGG | + | chr3_1:73995239-73995258 | Msa0374530:intron | 35.0% | |
| ! | CAATTCGTAACCCTGTATTT+TGG | + | chr3_1:73995617-73995636 | Msa0374530:CDS | 35.0% |
| AATCAAAATACGATGGCTCA+TGG | + | chr3_1:73995781-73995800 | Msa0374530:CDS | 35.0% | |
| AATATGAGGGGCAAGAAATA+AGG | - | chr3_1:73995875-73995894 | None:intergenic | 35.0% | |
| ! | TAAAGGTGTGATTCTCTTCT+AGG | + | chr3_1:73995966-73995985 | Msa0374530:intron | 35.0% |
| TTATTATGGTCCTGCATCAT+AGG | + | chr3_1:73996125-73996144 | Msa0374530:intron | 35.0% | |
| CAAGTAGAAATACCTACATC+CGG | + | chr3_1:73996156-73996175 | Msa0374530:CDS | 35.0% | |
| AAGTAGAAATACCTACATCC+GGG | + | chr3_1:73996157-73996176 | Msa0374530:CDS | 35.0% | |
| ! | TCCATGAAACTCTAGAGAAA+TGG | + | chr3_1:73996614-73996633 | Msa0374530:intron | 35.0% |
| !! | TCCATTTCTCTAGAGTTTCA+TGG | - | chr3_1:73996618-73996637 | None:intergenic | 35.0% |
| !! | CTTATTTTCCTATACTCTGC+AGG | - | chr3_1:73996669-73996688 | None:intergenic | 35.0% |
| ! | TTGGGCATGTCAAAGAATTT+TGG | + | chr3_1:73996731-73996750 | Msa0374530:intron | 35.0% |
| TGTGACTGACTAATTAAGCA+GGG | - | chr3_1:73996774-73996793 | None:intergenic | 35.0% | |
| !! | AAAAGCATTCCGCTATATCA+AGG | - | chr3_1:73996880-73996899 | None:intergenic | 35.0% |
| ! | GTGTTTTTCATCCTCATAGA+TGG | + | chr3_1:73996912-73996931 | Msa0374530:intron | 35.0% |
| ! | TTTTTCATCCTCATAGATGG+AGG | + | chr3_1:73996915-73996934 | Msa0374530:intron | 35.0% |
| TAAAACACACCTTCTGATGA+AGG | - | chr3_1:73996974-73996993 | None:intergenic | 35.0% | |
| CATATGGTATATCCACTATC+CGG | - | chr3_1:73997030-73997049 | None:intergenic | 35.0% | |
| TGGATATACCATATGCTATC+TGG | + | chr3_1:73997035-73997054 | Msa0374530:intron | 35.0% | |
| ! | ATCTAAGCATTGCATTTAGG+AGG | + | chr3_1:73997119-73997138 | Msa0374530:intron | 35.0% |
| ATAACAGACCTGCAGAATAT+GGG | - | chr3_1:73997302-73997321 | None:intergenic | 35.0% | |
| AATAACAGACCTGCAGAATA+TGG | - | chr3_1:73997303-73997322 | None:intergenic | 35.0% | |
| ATGGAAAAAATCTCAGGTAC+CGG | - | chr3_1:73997327-73997346 | None:intergenic | 35.0% | |
| !!! | TACCTGAGATTTTTTCCATC+TGG | + | chr3_1:73997328-73997347 | Msa0374530:CDS | 35.0% |
| !!! | ACCTGAGATTTTTTCCATCT+GGG | + | chr3_1:73997329-73997348 | Msa0374530:CDS | 35.0% |
| TTGTAAAGAAACTTCCCAGA+TGG | - | chr3_1:73997346-73997365 | None:intergenic | 35.0% | |
| ATCTGGGAAGTTTCTTTACA+AGG | + | chr3_1:73997345-73997364 | Msa0374530:CDS | 35.0% | |
| GTTCTCATACAATCACATAC+AGG | - | chr3_1:73997417-73997436 | None:intergenic | 35.0% | |
| GCTATTGATATCATCATTGC+AGG | + | chr3_1:73997665-73997684 | Msa0374530:intron | 35.0% | |
| GAAACTTTGTATTCCCTATC+TGG | + | chr3_1:73997814-73997833 | Msa0374530:intron | 35.0% | |
| TTTGTATTCCCTATCTGGTT+AGG | + | chr3_1:73997819-73997838 | Msa0374530:intron | 35.0% | |
| AAATCCAACCTAACCAGATA+GGG | - | chr3_1:73997830-73997849 | None:intergenic | 35.0% | |
| TTGATCTATTCTCTTAGCAG+AGG | - | chr3_1:73997868-73997887 | None:intergenic | 35.0% | |
| GCTTCTTCTAATGCTTTAAC+AGG | + | chr3_1:73997938-73997957 | Msa0374530:intron | 35.0% | |
| ATGAATGCCAACCAACAAAA+TGG | - | chr3_1:73997972-73997991 | None:intergenic | 35.0% | |
| GTTGGTTGGCATTCATTAAT+TGG | + | chr3_1:73997976-73997995 | Msa0374530:intron | 35.0% | |
| TTCATTAATCCTCATCTACC+AGG | + | chr3_1:73998103-73998122 | Msa0374530:intron | 35.0% | |
| TCATTAATCCTCATCTACCA+GGG | + | chr3_1:73998104-73998123 | Msa0374530:intron | 35.0% | |
| ! | GGTCGATCACAATTACATTT+TGG | - | chr3_1:73998203-73998222 | None:intergenic | 35.0% |
| CTATCTTACATCACTTACAC+TGG | + | chr3_1:73998228-73998247 | Msa0374530:intron | 35.0% | |
| ! | GTTTATTAGCCTCTGAATGT+AGG | + | chr3_1:73998340-73998359 | Msa0374530:intron | 35.0% |
| CAAATTCTACCTACATTCAG+AGG | - | chr3_1:73998352-73998371 | None:intergenic | 35.0% | |
| CTCAAATGGAACAAAGACAA+AGG | - | chr3_1:73998771-73998790 | None:intergenic | 35.0% | |
| CTTTGTCTTTGTTCCATTTG+AGG | + | chr3_1:73998769-73998788 | Msa0374530:CDS | 35.0% | |
| TAAAACTGTACCTCCTCAAA+TGG | - | chr3_1:73998785-73998804 | None:intergenic | 35.0% | |
| ATGTCTCCACCTATACAAAA+AGG | - | chr3_1:73999022-73999041 | None:intergenic | 35.0% | |
| AATTGAACCAGGTATTTCAG+GGG | - | chr3_1:73999101-73999120 | None:intergenic | 35.0% | |
| CAATTGAACCAGGTATTTCA+GGG | - | chr3_1:73999102-73999121 | None:intergenic | 35.0% | |
| ACAATTGAACCAGGTATTTC+AGG | - | chr3_1:73999103-73999122 | None:intergenic | 35.0% | |
| ! | GAGGTATTTACAATTGAACC+AGG | - | chr3_1:73999112-73999131 | None:intergenic | 35.0% |
| ! | AGTACGGTACCCAATGTTTT+CGG | + | chr3_1:73994112-73994131 | Msa0374530:five_prime_UTR | 40.0% |
| CGGTTGTAATCCGAAAACAT+TGG | - | chr3_1:73994125-73994144 | None:intergenic | 40.0% | |
| CCATGAGTGAAAGGAAATTG+AGG | - | chr3_1:73994292-73994311 | None:intergenic | 40.0% | |
| CCTCAATTTCCTTTCACTCA+TGG | + | chr3_1:73994289-73994308 | Msa0374530:exon | 40.0% | |
| ! | GAATATTCAGCTGAAAGCAC+CGG | - | chr3_1:73994519-73994538 | None:intergenic | 40.0% |
| AACAATGAGCTGAAAGCCTA+TGG | - | chr3_1:73994634-73994653 | None:intergenic | 40.0% | |
| ! | AAACCGATTCCAACTCAGAA+GGG | - | chr3_1:73994820-73994839 | None:intergenic | 40.0% |
| ! | AAAACCGATTCCAACTCAGA+AGG | - | chr3_1:73994821-73994840 | None:intergenic | 40.0% |
| ! | GTACATGAGCTATCTGAAGT+AGG | - | chr3_1:73995228-73995247 | None:intergenic | 40.0% |
| CTCAAATCCGTTAGAACCAA+CGG | - | chr3_1:73995422-73995441 | None:intergenic | 40.0% | |
| TCGAATGACTCCATATGACA+TGG | + | chr3_1:73995558-73995577 | Msa0374530:CDS | 40.0% | |
| CGAATGACTCCATATGACAT+GGG | + | chr3_1:73995559-73995578 | Msa0374530:CDS | 40.0% | |
| ATGCATTGCGCCAAAATACA+GGG | - | chr3_1:73995630-73995649 | None:intergenic | 40.0% | |
| !!! | GGCTTTTTTATGAAGCTCTC+TGG | + | chr3_1:73995732-73995751 | Msa0374530:intron | 40.0% |
| !! | TTTTATGAAGCTCTCTGGAG+CGG | + | chr3_1:73995737-73995756 | Msa0374530:intron | 40.0% |
| TTCTTGCCCCTCATATTGAT+TGG | + | chr3_1:73995878-73995897 | Msa0374530:intron | 40.0% | |
| TGCATAAAGACCTATGATGC+AGG | - | chr3_1:73996138-73996157 | None:intergenic | 40.0% | |
| AATCACTAATCCAGTTCACG+TGG | + | chr3_1:73996199-73996218 | Msa0374530:CDS | 40.0% | |
| ! | GGGTGTTACACACTTTATAG+AGG | - | chr3_1:73996703-73996722 | None:intergenic | 40.0% |
| !! | TGTAACACCCAAGAGTGTTT+GGG | + | chr3_1:73996713-73996732 | Msa0374530:intron | 40.0% |
| CTGTGACTGACTAATTAAGC+AGG | - | chr3_1:73996775-73996794 | None:intergenic | 40.0% | |
| GTGCCCCTCAACAATTATAA+TGG | - | chr3_1:73996837-73996856 | None:intergenic | 40.0% | |
| ! | TTATAATTGTTGAGGGGCAC+TGG | + | chr3_1:73996837-73996856 | Msa0374530:intron | 40.0% |
| ATGGAATTCCTCCATCTATG+AGG | - | chr3_1:73996926-73996945 | None:intergenic | 40.0% | |
| ACTCATCTATTCCTTGTGTG+TGG | + | chr3_1:73996993-73997012 | Msa0374530:intron | 40.0% | |
| AAGAGGAACCAGATAGCATA+TGG | - | chr3_1:73997046-73997065 | None:intergenic | 40.0% | |
| TATGTTTACCGATGGCAAAG+AGG | - | chr3_1:73997063-73997082 | None:intergenic | 40.0% | |
| TAACAGACCTGCAGAATATG+GGG | - | chr3_1:73997301-73997320 | None:intergenic | 40.0% | |
| TTCTGCAGGTCTGTTATTAC+CGG | + | chr3_1:73997305-73997324 | Msa0374530:intron | 40.0% | |
| TCCCAGATGGAAAAAATCTC+AGG | - | chr3_1:73997333-73997352 | None:intergenic | 40.0% | |
| ! | ACCAAAGACAGAGTCTGTTT+TGG | - | chr3_1:73997508-73997527 | None:intergenic | 40.0% |
| AAAACAGACTCTGTCTTTGG+TGG | + | chr3_1:73997507-73997526 | Msa0374530:CDS | 40.0% | |
| CTACACATTGACAGATGACA+AGG | + | chr3_1:73997533-73997552 | Msa0374530:CDS | 40.0% | |
| ATGCGTATCCTCAAAACAGT+AGG | - | chr3_1:73997723-73997742 | None:intergenic | 40.0% | |
| TATTCCCTATCTGGTTAGGT+TGG | + | chr3_1:73997823-73997842 | Msa0374530:intron | 40.0% | |
| CAAATCCAACCTAACCAGAT+AGG | - | chr3_1:73997831-73997850 | None:intergenic | 40.0% | |
| GTTGTGATATAACATAGCCC+TGG | - | chr3_1:73998124-73998143 | None:intergenic | 40.0% | |
| TTGACACGTTTGTGATTCTC+TGG | - | chr3_1:73998507-73998526 | None:intergenic | 40.0% | |
| TCCATGTGGTATAGGTTAAG+AGG | + | chr3_1:73998569-73998588 | Msa0374530:intron | 40.0% | |
| TCCTCTTAACCTATACCACA+TGG | - | chr3_1:73998573-73998592 | None:intergenic | 40.0% | |
| AGGTTAAGAGGAACAACTAC+AGG | + | chr3_1:73998581-73998600 | Msa0374530:intron | 40.0% | |
| GGTTAAGAGGAACAACTACA+GGG | + | chr3_1:73998582-73998601 | Msa0374530:intron | 40.0% | |
| GTTAAGAGGAACAACTACAG+GGG | + | chr3_1:73998583-73998602 | Msa0374530:CDS | 40.0% | |
| TTGATCTCACTTGTCACTAG+TGG | + | chr3_1:73998623-73998642 | Msa0374530:CDS | 40.0% | |
| ACATCTGAAGAGGACATTCT+TGG | + | chr3_1:73998668-73998687 | Msa0374530:CDS | 40.0% | |
| TGTCTTTGTTCCATTTGAGG+AGG | + | chr3_1:73998772-73998791 | Msa0374530:CDS | 40.0% | |
| ! | ATCTCTTTTGAATTTGCCCG+TGG | + | chr3_1:73999040-73999059 | Msa0374530:CDS | 40.0% |
| ! | GTTTTCGGATTACAACCGTG+TGG | + | chr3_1:73994127-73994146 | Msa0374530:five_prime_UTR | 45.0% |
| AACGTTAGACACCAGAGGTT+TGG | - | chr3_1:73994186-73994205 | None:intergenic | 45.0% | |
| GTATCAACGTTAGACACCAG+AGG | - | chr3_1:73994191-73994210 | None:intergenic | 45.0% | |
| GACACACTTCGACATCAAAC+AGG | - | chr3_1:73994762-73994781 | None:intergenic | 45.0% | |
| TTTAACGGTCCCTTCTGAGT+TGG | + | chr3_1:73994808-73994827 | Msa0374530:CDS | 45.0% | |
| !! | CTGAGTTGGAATCGGTTTTG+AGG | + | chr3_1:73994822-73994841 | Msa0374530:CDS | 45.0% |
| ACTTTGTTACAAGGAGGCCA+TGG | + | chr3_1:73994861-73994880 | Msa0374530:CDS | 45.0% | |
| !! | GTGGGACTAGTTACAATGTG+CGG | + | chr3_1:73995173-73995192 | Msa0374530:intron | 45.0% |
| !! | TGGGACTAGTTACAATGTGC+GGG | + | chr3_1:73995174-73995193 | Msa0374530:intron | 45.0% |
| !! | AGTATTTGGTGCATCACCGT+TGG | + | chr3_1:73995403-73995422 | Msa0374530:intron | 45.0% |
| !! | TGCATCACCGTTGGTTCTAA+CGG | + | chr3_1:73995412-73995431 | Msa0374530:intron | 45.0% |
| ! | GAGGCTTTTCCCATGTCATA+TGG | - | chr3_1:73995571-73995590 | None:intergenic | 45.0% |
| ! | CCATTTTCGACACACACAAG+AGG | - | chr3_1:73995590-73995609 | None:intergenic | 45.0% |
| CCTCTTGTGTGTGTCGAAAA+TGG | + | chr3_1:73995587-73995606 | Msa0374530:CDS | 45.0% | |
| CTTGTGTGTGTCGAAAATGG+CGG | + | chr3_1:73995590-73995609 | Msa0374530:CDS | 45.0% | |
| CATGCATTGCGCCAAAATAC+AGG | - | chr3_1:73995631-73995650 | None:intergenic | 45.0% | |
| CAAAATACGATGGCTCATGG+CGG | + | chr3_1:73995784-73995803 | Msa0374530:CDS | 45.0% | |
| TTACCGTCAAATCGCAACCT+TGG | - | chr3_1:73995828-73995847 | None:intergenic | 45.0% | |
| GGGTCACCAATCAATATGAG+GGG | - | chr3_1:73995887-73995906 | None:intergenic | 45.0% | |
| CGGGTCACCAATCAATATGA+GGG | - | chr3_1:73995888-73995907 | None:intergenic | 45.0% | |
| ACGGGTCACCAATCAATATG+AGG | - | chr3_1:73995889-73995908 | None:intergenic | 45.0% | |
| ! | TATTGATTGGTGACCCGTGA+TGG | + | chr3_1:73995891-73995910 | Msa0374530:intron | 45.0% |
| !! | TTAGTCTTGTGCAGTGGAGA+GGG | - | chr3_1:73996004-73996023 | None:intergenic | 45.0% |
| !! | TTTAGTCTTGTGCAGTGGAG+AGG | - | chr3_1:73996005-73996024 | None:intergenic | 45.0% |
| AGAAATACCTACATCCGGGT+TGG | + | chr3_1:73996161-73996180 | Msa0374530:CDS | 45.0% | |
| TGAATGCATACCACGTGAAC+TGG | - | chr3_1:73996212-73996231 | None:intergenic | 45.0% | |
| !! | GTGTAACACCCAAGAGTGTT+TGG | + | chr3_1:73996712-73996731 | Msa0374530:intron | 45.0% |
| TGACATGCCCAAACACTCTT+GGG | - | chr3_1:73996723-73996742 | None:intergenic | 45.0% | |
| TTGACATGCCCAAACACTCT+TGG | - | chr3_1:73996724-73996743 | None:intergenic | 45.0% | |
| CTATTCCTTGTGTGTGGTGT+TGG | + | chr3_1:73996999-73997018 | Msa0374530:intron | 45.0% | |
| ATCAACCAACACCACACACA+AGG | - | chr3_1:73997007-73997026 | None:intergenic | 45.0% | |
| ! | ATCTGGTTCCTCTTTGCCAT+CGG | + | chr3_1:73997052-73997071 | Msa0374530:intron | 45.0% |
| AATTTCCCCCCATATTCTGC+AGG | + | chr3_1:73997291-73997310 | Msa0374530:intron | 45.0% | |
| AACAGACCTGCAGAATATGG+GGG | - | chr3_1:73997300-73997319 | None:intergenic | 45.0% | |
| GCCAAAACAGACTCTGTCTT+TGG | + | chr3_1:73997504-73997523 | Msa0374530:CDS | 45.0% | |
| !!! | CTGTTTTGAGGATACGCATG+AGG | + | chr3_1:73997724-73997743 | Msa0374530:CDS | 45.0% |
| TGAGGATACGCATGAGGTAA+TGG | + | chr3_1:73997730-73997749 | Msa0374530:intron | 45.0% | |
| TCTCTTAGCAGAGGACATAC+TGG | - | chr3_1:73997859-73997878 | None:intergenic | 45.0% | |
| TAACATAGCCCTGGTAGATG+AGG | - | chr3_1:73998115-73998134 | None:intergenic | 45.0% | |
| CAACTACAGGGGCTAACAAT+AGG | + | chr3_1:73998594-73998613 | Msa0374530:CDS | 45.0% | |
| TACAGGGGCTAACAATAGGA+TGG | + | chr3_1:73998598-73998617 | Msa0374530:CDS | 45.0% | |
| TAGTGGTGTGGACACTAATG+AGG | + | chr3_1:73998640-73998659 | Msa0374530:CDS | 45.0% | |
| TGAGGCAAGTACATCTGAAG+AGG | + | chr3_1:73998658-73998677 | Msa0374530:CDS | 45.0% | |
| GACATTCTTGGAGTCGTTGA+AGG | + | chr3_1:73998680-73998699 | Msa0374530:CDS | 45.0% | |
| TTCTTGGAGTCGTTGAAGGA+TGG | + | chr3_1:73998684-73998703 | Msa0374530:CDS | 45.0% | |
| GAATTTGCCCGTGGAGAAAA+TGG | + | chr3_1:73999049-73999068 | Msa0374530:CDS | 45.0% | |
| AATGATGCCCCTGAAATACC+TGG | + | chr3_1:73999091-73999110 | Msa0374530:exon | 45.0% | |
| AATTTGCGTACTTGCATGCG+TGG | + | chr3_1:73999156-73999175 | Msa0374530:three_prime_UTR | 45.0% | |
| !!! | ATTCATATATAATTTTAAAT+AGG | - | chr3_1:73997155-73997174 | None:intergenic | 5.0% |
| TCTGACATGCACATGCCACA+CGG | - | chr3_1:73994145-73994164 | None:intergenic | 50.0% | |
| ATTCCGCGAAACCAAACCTC+TGG | + | chr3_1:73994172-73994191 | Msa0374530:five_prime_UTR | 50.0% | |
| ! | ACACCAGAGGTTTGGTTTCG+CGG | - | chr3_1:73994178-73994197 | None:intergenic | 50.0% |
| TTCCTTTCACTCATGGCGTC+AGG | + | chr3_1:73994296-73994315 | Msa0374530:exon | 50.0% | |
| AACCTGACGCCATGAGTGAA+AGG | - | chr3_1:73994301-73994320 | None:intergenic | 50.0% | |
| ! | GGTCCCTTCTGAGTTGGAAT+CGG | + | chr3_1:73994814-73994833 | Msa0374530:CDS | 50.0% |
| GCGTTGTACATACCAAGCCA+TGG | - | chr3_1:73994881-73994900 | None:intergenic | 50.0% | |
| ACCAGATGAGCTGCTCTTTG+AGG | + | chr3_1:73995090-73995109 | Msa0374530:CDS | 50.0% | |
| ACCTCAAAGAGCAGCTCATC+TGG | - | chr3_1:73995094-73995113 | None:intergenic | 50.0% | |
| TTGGCGCAATGCATGCTTGA+AGG | + | chr3_1:73995636-73995655 | Msa0374530:CDS | 50.0% | |
| TGGCGCAATGCATGCTTGAA+GGG | + | chr3_1:73995637-73995656 | Msa0374530:CDS | 50.0% | |
| GCAATGCATGCTTGAAGGGT+TGG | + | chr3_1:73995641-73995660 | Msa0374530:CDS | 50.0% | |
| TTGGCAGGTAAGGTCAATGG+AGG | + | chr3_1:73995660-73995679 | Msa0374530:intron | 50.0% | |
| ! | ATGGCTCATGGCGGAAAATG+TGG | + | chr3_1:73995793-73995812 | Msa0374530:CDS | 50.0% |
| GGCGGAAAATGTGGCTCTTA+CGG | + | chr3_1:73995802-73995821 | Msa0374530:CDS | 50.0% | |
| AAATGTGGCTCTTACGGCCA+AGG | + | chr3_1:73995808-73995827 | Msa0374530:CDS | 50.0% | |
| TGCTCTTCCCTGCAGAGTAT+AGG | + | chr3_1:73996658-73996677 | Msa0374530:intron | 50.0% | |
| ! | ACACCTTCTGATGAAGGTGC+TGG | - | chr3_1:73996968-73996987 | None:intergenic | 50.0% |
| !! | GTGTGTGGTGTTGGTTGATC+CGG | + | chr3_1:73997008-73997027 | Msa0374530:intron | 50.0% |
| !! | GTGTTGGTTGATCCGGATAG+TGG | + | chr3_1:73997015-73997034 | Msa0374530:intron | 50.0% |
| ACAGACCTGCAGAATATGGG+GGG | - | chr3_1:73997299-73997318 | None:intergenic | 50.0% | |
| AAAACAGTAGGTCGCATGCC+TGG | - | chr3_1:73997711-73997730 | None:intergenic | 50.0% | |
| ! | GCATGCGACCTACTGTTTTG+AGG | + | chr3_1:73997712-73997731 | Msa0374530:CDS | 50.0% |
| CTCACTTGTCACTAGTGGTG+TGG | + | chr3_1:73998628-73998647 | Msa0374530:CDS | 50.0% | |
| ATGTGAGACTGCTGGCACAT+CGG | - | chr3_1:73998732-73998751 | None:intergenic | 50.0% | |
| TGCCAGCAGTCTCACATAAG+AGG | + | chr3_1:73998735-73998754 | Msa0374530:CDS | 50.0% | |
| GCCAGCAGTCTCACATAAGA+GGG | + | chr3_1:73998736-73998755 | Msa0374530:CDS | 50.0% | |
| CCAGCAGTCTCACATAAGAG+GGG | + | chr3_1:73998737-73998756 | Msa0374530:CDS | 50.0% | |
| !! | TTCAGGGGCATCATTCAACC+AGG | - | chr3_1:73999086-73999105 | None:intergenic | 50.0% |
| TCACTCATGGCGTCAGGTTC+AGG | + | chr3_1:73994302-73994321 | Msa0374530:exon | 55.0% | |
| ! | GAAGAAGGTGCGGATCGAAG+TGG | - | chr3_1:73994348-73994367 | None:intergenic | 55.0% |
| GTTACAAGGAGGCCATGGCT+TGG | + | chr3_1:73994866-73994885 | Msa0374530:CDS | 55.0% | |
| ! | TGCATGCTTGAAGGGTTGGC+AGG | + | chr3_1:73995645-73995664 | Msa0374530:CDS | 55.0% |
| ! | GCTTGAAGGGTTGGCAGGTA+AGG | + | chr3_1:73995650-73995669 | Msa0374530:intron | 55.0% |
| ! | GGGTTGGCAGGTAAGGTCAA+TGG | + | chr3_1:73995657-73995676 | Msa0374530:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | + | chr3_1:73995822-73995841 | Msa0374530:CDS | 55.0% | |
| TGCAACTCCAACCCGGATGT+AGG | - | chr3_1:73996171-73996190 | None:intergenic | 55.0% | |
| TCCACTCTGCAACTCCAACC+CGG | - | chr3_1:73996178-73996197 | None:intergenic | 55.0% | |
| !! | CTTCTGATGAAGGTGCTGGC+TGG | - | chr3_1:73996964-73996983 | None:intergenic | 55.0% |
| CAGCCAGCACCTTCATCAGA+AGG | + | chr3_1:73996962-73996981 | Msa0374530:intron | 55.0% | |
| GAAGCTGCTGTCCTGTATCC+AGG | + | chr3_1:73997690-73997709 | Msa0374530:CDS | 55.0% | |
| TAGGTCGCATGCCTGGATAC+AGG | - | chr3_1:73997704-73997723 | None:intergenic | 55.0% | |
| TGGAGTCGTTGAAGGATGGC+AGG | + | chr3_1:73998688-73998707 | Msa0374530:CDS | 55.0% | |
| TGTGAGACTGCTGGCACATC+GGG | - | chr3_1:73998731-73998750 | None:intergenic | 55.0% | |
| CCCCTCTTATGTGAGACTGC+TGG | - | chr3_1:73998740-73998759 | None:intergenic | 55.0% | |
| ! | GTGAGACCTGTCGCGCCTTT+TGG | + | chr3_1:73995016-73995035 | Msa0374530:CDS | 60.0% |
| ! | GCACTTCCAAAAGGCGCGAC+AGG | - | chr3_1:73995025-73995044 | None:intergenic | 60.0% |
| ! | TCCGGGTTGGAGTTGCAGAG+TGG | + | chr3_1:73996174-73996193 | Msa0374530:CDS | 60.0% |
| GTGAGACTGCTGGCACATCG+GGG | - | chr3_1:73998730-73998749 | None:intergenic | 60.0% | |
| GTGCGGATCGAAGTGGCGAG+AGG | - | chr3_1:73994341-73994360 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73994104 | 73999434 | 73994104 | ID=Msa0374530;Name=Msa0374530 |
| chr3_1 | mRNA | 73994104 | 73999434 | 73994104 | ID=Msa0374530-mRNA-1;Parent=Msa0374530;Name=Msa0374530-mRNA-1;_AED=0.22;_eAED=0.22;_QI=204|1|1|1|1|1|11|343|329 |
| chr3_1 | exon | 73994104 | 73994323 | 73994104 | ID=Msa0374530-mRNA-1:exon:17034;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73994801 | 73994887 | 73994801 | ID=Msa0374530-mRNA-1:exon:17035;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73994999 | 73995111 | 73994999 | ID=Msa0374530-mRNA-1:exon:17036;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73995550 | 73995666 | 73995550 | ID=Msa0374530-mRNA-1:exon:17037;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73995747 | 73995843 | 73995747 | ID=Msa0374530-mRNA-1:exon:17038;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73996147 | 73996220 | 73996147 | ID=Msa0374530-mRNA-1:exon:17039;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73997313 | 73997366 | 73997313 | ID=Msa0374530-mRNA-1:exon:17040;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73997453 | 73997554 | 73997453 | ID=Msa0374530-mRNA-1:exon:17041;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73997687 | 73997745 | 73997687 | ID=Msa0374530-mRNA-1:exon:17042;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73998583 | 73998793 | 73998583 | ID=Msa0374530-mRNA-1:exon:17043;Parent=Msa0374530-mRNA-1 |
| chr3_1 | exon | 73999032 | 73999434 | 73999032 | ID=Msa0374530-mRNA-1:exon:17044;Parent=Msa0374530-mRNA-1 |
| chr3_1 | five_prime_UTR | 73994104 | 73994307 | 73994104 | ID=Msa0374530-mRNA-1:five_prime_utr;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73994308 | 73994323 | 73994308 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73994801 | 73994887 | 73994801 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73994999 | 73995111 | 73994999 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73995550 | 73995666 | 73995550 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73995747 | 73995843 | 73995747 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73996147 | 73996220 | 73996147 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73997313 | 73997366 | 73997313 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73997453 | 73997554 | 73997453 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73997687 | 73997745 | 73997687 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73998583 | 73998793 | 73998583 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | CDS | 73999032 | 73999091 | 73999032 | ID=Msa0374530-mRNA-1:cds;Parent=Msa0374530-mRNA-1 |
| chr3_1 | three_prime_UTR | 73999092 | 73999434 | 73999092 | ID=Msa0374530-mRNA-1:three_prime_utr;Parent=Msa0374530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
