Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525370 | XP_003602065.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525370 | sp|Q9XI00|SKI32_ARATH | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525370 | B7FL96 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374360 | Msa0525370 | 0.942144 | 1.207313e-101 | -8.615850e-47 |
| Msa0374440 | Msa0525370 | 0.810780 | 9.722312e-51 | -8.615850e-47 |
| Msa0374530 | Msa0525370 | 0.803352 | 3.631682e-49 | -8.615850e-47 |
| Msa0374570 | Msa0525370 | 0.817367 | 3.420513e-52 | -8.615850e-47 |
| Msa0469920 | Msa0525370 | 0.978777 | 1.535156e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525370 | MtrunA17_Chr3g0124891 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Msa0525370 | MtrunA17_Chr4g0034401 | 98.182 | 55 | 1 | 0 | 20 | 74 | 17 | 71 | 7.13e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525370 | AT1G21760.1 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Msa0525370 | AT1G21760.2 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
Find 109 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGAACCAGGTATTTC+AGG | 0.219347 | 3_4:-78911432 | None:intergenic |
| CAATTCGTAACCCTGTATTT+TGG | 0.228001 | 3_4:+78907950 | Msa0525370:CDS |
| GTGAGACCTGTCGCGCCTTT+TGG | 0.256079 | 3_4:+78907349 | Msa0525370:CDS |
| GAATTTGCCCGTGGAGAAAA+TGG | 0.273613 | 3_4:+78911381 | Msa0525370:CDS |
| CTTTGTCTTTGTTCCATTTG+AGG | 0.303655 | 3_4:+78911101 | Msa0525370:CDS |
| TCACTCATGGCGTCAGGTTC+AGG | 0.314341 | 3_4:+78906638 | Msa0525370:exon |
| TGTGAGACTGCTGGCACATC+GGG | 0.330474 | 3_4:-78911060 | None:intergenic |
| CCTCTTGTGTGTGTCGAAAA+TGG | 0.348503 | 3_4:+78907920 | Msa0525370:CDS |
| AAAATGGATTATTATGTTCC+TGG | 0.362832 | 3_4:+78911397 | Msa0525370:CDS |
| GCCAAAACAGACTCTGTCTT+TGG | 0.364430 | 3_4:+78909836 | Msa0525370:CDS |
| TATAAATATTGAAAGTTATG+AGG | 0.373083 | 3_4:-78911460 | None:intergenic |
| TTCTGCAGGTCTGTTATTAC+CGG | 0.373358 | 3_4:+78909637 | Msa0525370:intron |
| TGAATGCATACCACGTGAAC+TGG | 0.384411 | 3_4:-78908542 | None:intergenic |
| CATGCATTGCGCCAAAATAC+AGG | 0.392919 | 3_4:-78907961 | None:intergenic |
| ACCAGATGAGCTGCTCTTTG+AGG | 0.392938 | 3_4:+78907423 | Msa0525370:CDS |
| AGTTAAACACATGATTTGTA+TGG | 0.399824 | 3_4:-78911686 | None:intergenic |
| ACCAAAGACAGAGTCTGTTT+TGG | 0.404539 | 3_4:-78909837 | None:intergenic |
| TTCCTTTCACTCATGGCGTC+AGG | 0.406079 | 3_4:+78906632 | Msa0525370:exon |
| ACATCTGAAGAGGACATTCT+TGG | 0.408711 | 3_4:+78911000 | Msa0525370:CDS |
| ACCTCAAAGAGCAGCTCATC+TGG | 0.409773 | 3_4:-78907424 | None:intergenic |
| CGGCCAAGGTTGCGATTTGA+CGG | 0.413839 | 3_4:+78908155 | Msa0525370:CDS |
| TAAAACTGTACCTCCTCAAA+TGG | 0.415424 | 3_4:-78911114 | None:intergenic |
| GGCGGAAAATGTGGCTCTTA+CGG | 0.415806 | 3_4:+78908135 | Msa0525370:CDS |
| CCTCAATTTCCTTTCACTCA+TGG | 0.417964 | 3_4:+78906625 | Msa0525370:exon |
| CAACTACAGGGGCTAACAAT+AGG | 0.418268 | 3_4:+78910926 | Msa0525370:CDS |
| AACGTAAGACACCAGAGGTT+TGG | 0.423828 | 3_4:-78906519 | None:intergenic |
| CTGTTAACTACTTTGTTACA+AGG | 0.425322 | 3_4:+78907185 | Msa0525370:CDS |
| ACACCAGAGGTTTGGTTTCG+CGG | 0.432398 | 3_4:-78906511 | None:intergenic |
| GAAGCTGCTGTCCTGTATCC+AGG | 0.445399 | 3_4:+78910022 | Msa0525370:CDS |
| ATCTGGGAAGTTTCTTTACA+AGG | 0.447611 | 3_4:+78909677 | Msa0525370:CDS |
| CAATTGAACCAGGTATTTCA+GGG | 0.451234 | 3_4:-78911431 | None:intergenic |
| TGCCAGCAGTCTCACATAAG+AGG | 0.453131 | 3_4:+78911067 | Msa0525370:CDS |
| CAAGTAGAAATACCTACATC+CGG | 0.465192 | 3_4:+78908489 | Msa0525370:CDS |
| TCCATGTGGTATAGGTTAAG+AGG | 0.465451 | 3_4:+78910901 | Msa0525370:intron |
| AGCGGAACAAAAGATAAATT+CGG | 0.469092 | 3_4:-78911543 | None:intergenic |
| TTGGCGCAATGCATGCTTGA+AGG | 0.473896 | 3_4:+78907969 | Msa0525370:CDS |
| AGGTTAAGAGGAACAACTAC+AGG | 0.479419 | 3_4:+78910913 | Msa0525370:intron |
| GGTCCCTTCTGAGTTGGAAT+CGG | 0.480778 | 3_4:+78907147 | Msa0525370:CDS |
| TTTCTACTTGCACTTCCAAA+AGG | 0.482993 | 3_4:-78907364 | None:intergenic |
| GCACTTCCAAAAGGCGCGAC+AGG | 0.483438 | 3_4:-78907355 | None:intergenic |
| GACATTCTTGGAGTCGTTGA+AGG | 0.484136 | 3_4:+78911012 | Msa0525370:CDS |
| AAAACAGTAGGTCGCATGCC+TGG | 0.485790 | 3_4:-78910040 | None:intergenic |
| ATGTGAGACTGCTGGCACAT+CGG | 0.486579 | 3_4:-78911061 | None:intergenic |
| TAGAACTGACTTCGTCAAAA+CGG | 0.493472 | 3_4:-78906551 | None:intergenic |
| TGCATGCTTGAAGGGTTGGC+AGG | 0.501973 | 3_4:+78907978 | Msa0525370:CDS |
| GGTTGTAATCCGAAAACATT+GGG | 0.515132 | 3_4:-78906457 | None:intergenic |
| TGGAGTCGTTGAAGGATGGC+AGG | 0.521728 | 3_4:+78911020 | Msa0525370:CDS |
| TAGGTCGCATGCCTGGATAC+AGG | 0.528585 | 3_4:-78910033 | None:intergenic |
| GCAATGCATGCTTGAAGGGT+TGG | 0.533926 | 3_4:+78907974 | Msa0525370:CDS |
| TTTAACGGTCCCTTCTGAGT+TGG | 0.534181 | 3_4:+78907141 | Msa0525370:CDS |
| TTGATCTCACTTGTCACTAG+TGG | 0.534671 | 3_4:+78910955 | Msa0525370:CDS |
| TCCACTCTGCAACTCCAACC+CGG | 0.540341 | 3_4:-78908508 | None:intergenic |
| TGGCGCAATGCATGCTTGAA+GGG | 0.540704 | 3_4:+78907970 | Msa0525370:CDS |
| TTCTTGGAGTCGTTGAAGGA+TGG | 0.542284 | 3_4:+78911016 | Msa0525370:CDS |
| CCCCTCTTATGTGAGACTGC+TGG | 0.544075 | 3_4:-78911069 | None:intergenic |
| TGTCTTTGTTCCATTTGAGG+AGG | 0.547210 | 3_4:+78911104 | Msa0525370:CDS |
| ATTCCGCGAAACCAAACCTC+TGG | 0.551803 | 3_4:+78906508 | Msa0525370:five_prime_UTR |
| GCCAGCAGTCTCACATAAGA+GGG | 0.555369 | 3_4:+78911068 | Msa0525370:CDS |
| AAATGTGGCTCTTACGGCCA+AGG | 0.555691 | 3_4:+78908141 | Msa0525370:CDS |
| TCAAATGGAACAAAGACAAA+GGG | 0.558084 | 3_4:-78911099 | None:intergenic |
| AAAACAGACTCTGTCTTTGG+TGG | 0.559204 | 3_4:+78909839 | Msa0525370:CDS |
| AACCTGACGCCATGAGTGAA+AGG | 0.560053 | 3_4:-78906634 | None:intergenic |
| GTTACAAGGAGGCCATGGCT+TGG | 0.560559 | 3_4:+78907199 | Msa0525370:CDS |
| AATCAAAATACGATGGCTCA+TGG | 0.565621 | 3_4:+78908114 | Msa0525370:CDS |
| TTCAGGGGCAGCATTCAACC+AGG | 0.571279 | 3_4:-78911415 | None:intergenic |
| ACTTTGTTACAAGGAGGCCA+TGG | 0.571990 | 3_4:+78907194 | Msa0525370:CDS |
| TTGTAAAGAAACTTCCCAGA+TGG | 0.574995 | 3_4:-78909675 | None:intergenic |
| CCATGAGTGAAAGGAAATTG+AGG | 0.575708 | 3_4:-78906625 | None:intergenic |
| AATGCTGCCCCTGAAATACC+TGG | 0.575749 | 3_4:+78911423 | Msa0525370:exon |
| CTCAAATGGAACAAAGACAA+AGG | 0.580041 | 3_4:-78911100 | None:intergenic |
| TGCAACTCCAACCCGGATGT+AGG | 0.586345 | 3_4:-78908501 | None:intergenic |
| ATGGCTCATGGCGGAAAATG+TGG | 0.589306 | 3_4:+78908126 | Msa0525370:CDS |
| TACAGGGGCTAACAATAGGA+TGG | 0.594300 | 3_4:+78910930 | Msa0525370:CDS |
| TTACCGTCAAATCGCAACCT+TGG | 0.595041 | 3_4:-78908158 | None:intergenic |
| TGAAAGGAAATTGAGGTGAA+AGG | 0.598779 | 3_4:-78906618 | None:intergenic |
| AAACCGATTCCAACTCAGAA+GGG | 0.600214 | 3_4:-78907150 | None:intergenic |
| TCGAATGACTCCATATGACA+TGG | 0.601277 | 3_4:+78907891 | Msa0525370:CDS |
| AATTTGCGTACTTGCATGTG+TGG | 0.602551 | 3_4:+78911488 | Msa0525370:three_prime_UTR |
| AGAAATACCTACATCCGGGT+TGG | 0.606217 | 3_4:+78908494 | Msa0525370:CDS |
| GGTTAAGAGGAACAACTACA+GGG | 0.606446 | 3_4:+78910914 | Msa0525370:intron |
| TTCTCAAAAGATCAAAGATG+TGG | 0.608842 | 3_4:+78909790 | Msa0525370:CDS |
| CTACACATTGACAGATGACA+AGG | 0.608992 | 3_4:+78909865 | Msa0525370:CDS |
| TGAGGCAAGTACATCTGAAG+AGG | 0.609172 | 3_4:+78910990 | Msa0525370:CDS |
| AAAACCGATTCCAACTCAGA+AGG | 0.609545 | 3_4:-78907151 | None:intergenic |
| TAGTGGTGTGGACACTAATG+AGG | 0.610301 | 3_4:+78910972 | Msa0525370:CDS |
| ATGCGTATCCTCAAAACAGT+AGG | 0.614318 | 3_4:-78910052 | None:intergenic |
| ATGCATTGCGCCAAAATACA+GGG | 0.615006 | 3_4:-78907960 | None:intergenic |
| GAGGTATTTACAATTGAACC+AGG | 0.615601 | 3_4:-78911441 | None:intergenic |
| CTCACTTGTCACTAGTGGTG+TGG | 0.615722 | 3_4:+78910960 | Msa0525370:CDS |
| CGGTTGTAATCCGAAAACAT+TGG | 0.624551 | 3_4:-78906458 | None:intergenic |
| TTTGGTTAAAGATCTTTATG+GGG | 0.625965 | 3_4:+78907321 | Msa0525370:intron |
| AAGTAGAAATACCTACATCC+GGG | 0.640220 | 3_4:+78908490 | Msa0525370:CDS |
| CGAATGACTCCATATGACAT+GGG | 0.647091 | 3_4:+78907892 | Msa0525370:CDS |
| ATACTTCAATCAAAATACGA+TGG | 0.652918 | 3_4:+78908107 | Msa0525370:CDS |
| GCGTTGTACATACCAAGCCA+TGG | 0.657436 | 3_4:-78907211 | None:intergenic |
| TTAACTACTTTGTTACAAGG+AGG | 0.664306 | 3_4:+78907188 | Msa0525370:CDS |
| AAAAGAGAAGAATCAACATG+AGG | 0.664765 | 3_4:-78907388 | None:intergenic |
| AATTGAACCAGGTATTTCAG+GGG | 0.670026 | 3_4:-78911430 | None:intergenic |
| TCTGACATGCACATGCCACA+CGG | 0.673940 | 3_4:-78906478 | None:intergenic |
| TCCGGGTTGGAGTTGCAGAG+TGG | 0.680422 | 3_4:+78908507 | Msa0525370:CDS |
| AATCACTAATCCAGTTCACG+TGG | 0.691915 | 3_4:+78908532 | Msa0525370:CDS |
| CCAGCAGTCTCACATAAGAG+GGG | 0.706035 | 3_4:+78911069 | Msa0525370:CDS |
| CATGAAATGATTCAGAACCA+CGG | 0.728651 | 3_4:-78906595 | None:intergenic |
| CAAAATACGATGGCTCATGG+CGG | 0.731935 | 3_4:+78908117 | Msa0525370:CDS |
| GTTAAGAGGAACAACTACAG+GGG | 0.746465 | 3_4:+78910915 | Msa0525370:CDS |
| GTATCAACGTAAGACACCAG+AGG | 0.750941 | 3_4:-78906524 | None:intergenic |
| GTGAGACTGCTGGCACATCG+GGG | 0.755204 | 3_4:-78911059 | None:intergenic |
| CTTGTGTGTGTCGAAAATGG+CGG | 0.757415 | 3_4:+78907923 | Msa0525370:CDS |
| AGTTACATAGGAGCACAAAG+CGG | 0.795708 | 3_4:-78911561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAAATCAGA+TGG | + | chr3_4:78907065-78907084 | Msa0525370:intron | 10.0% |
| !!! | ATTCAAATCTTTAAAATCTT+TGG | + | chr3_4:78906750-78906769 | Msa0525370:intron | 15.0% |
| !!! | AATTTTCAACAATTTTAACA+TGG | + | chr3_4:78906793-78906812 | Msa0525370:intron | 15.0% |
| !!! | ATTTTCAACAATTTTAACAT+GGG | + | chr3_4:78906794-78906813 | Msa0525370:intron | 15.0% |
| !!! | TAAATTAATAATTTTGAGAC+CGG | + | chr3_4:78906833-78906852 | Msa0525370:intron | 15.0% |
| !! | TATTATTAATTAAGATGACA+CGG | - | chr3_4:78907052-78907071 | None:intergenic | 15.0% |
| !! | AACACAATAATAAATAAACA+TGG | - | chr3_4:78907242-78907261 | None:intergenic | 15.0% |
| !!! | TAAAAATAATATTCTGAAAG+TGG | + | chr3_4:78908354-78908373 | Msa0525370:intron | 15.0% |
| !! | GATATTAAATTGATAAATAG+TGG | - | chr3_4:78908678-78908697 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAAAA+AGG | + | chr3_4:78908783-78908802 | Msa0525370:intron | 15.0% |
| !!! | ATTTTAAAGCCTTTTTTTTT+AGG | - | chr3_4:78908795-78908814 | None:intergenic | 15.0% |
| !! | GCATTATTTAAATCTATATA+CGG | + | chr3_4:78909960-78909979 | Msa0525370:intron | 15.0% |
| !! | AATTTACATGTGATATTATT+TGG | - | chr3_4:78910417-78910436 | None:intergenic | 15.0% |
| !! | TATAAATATTGAAAGTTATG+AGG | - | chr3_4:78911463-78911482 | None:intergenic | 15.0% |
| !!! | AATCATATATCCTTTATTTT+TGG | + | chr3_4:78911725-78911744 | Msa0525370:three_prime_UTR | 15.0% |
| !!! | TTTTCAAATTCCAAAAATAA+AGG | - | chr3_4:78911738-78911757 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAACAATGAAGA+AGG | - | chr3_4:78906699-78906718 | None:intergenic | 20.0% |
| !! | GCATATTACATAAATGAAAT+TGG | + | chr3_4:78906933-78906952 | Msa0525370:intron | 20.0% |
| !!! | CTTATTGTTTTTATGTGTTT+TGG | + | chr3_4:78907303-78907322 | Msa0525370:intron | 20.0% |
| !!! | TTTTGGTTAAAGATCTTTAT+GGG | + | chr3_4:78907320-78907339 | Msa0525370:intron | 20.0% |
| !!! | ATTTATTGAATACATTTTGC+AGG | + | chr3_4:78907861-78907880 | Msa0525370:intron | 20.0% |
| !! | AATAAAAAACTTAACCATCA+CGG | - | chr3_4:78908241-78908260 | None:intergenic | 20.0% |
| !! | TGGAAATTTATCGTATTTAA+AGG | + | chr3_4:78908282-78908301 | Msa0525370:intron | 20.0% |
| !! | AGACTAACAGAATTTAAAAA+AGG | - | chr3_4:78908603-78908622 | None:intergenic | 20.0% |
| !! | AATTGTAGTATTTGAATAGA+GGG | + | chr3_4:78909129-78909148 | Msa0525370:intron | 20.0% |
| !! | AACAATTATAATGGTTAACA+AGG | - | chr3_4:78909160-78909179 | None:intergenic | 20.0% |
| !! | TTAACCATTATAATTGTTGA+GGG | + | chr3_4:78909162-78909181 | Msa0525370:intron | 20.0% |
| !! | TTATTCATATGCTTAAAGAT+TGG | - | chr3_4:78909528-78909547 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGGTTATAATT+TGG | + | chr3_4:78909688-78909707 | Msa0525370:intron | 20.0% |
| !! | TCATTATTTGTATATCTACT+AGG | + | chr3_4:78909911-78909930 | Msa0525370:intron | 20.0% |
| !! | AGAATTATGTATTATTAGTG+AGG | + | chr3_4:78910248-78910267 | Msa0525370:intron | 20.0% |
| !! | TCACTTAATATAAGTTAGAA+TGG | + | chr3_4:78910497-78910516 | Msa0525370:intron | 20.0% |
| !!! | ATTTTTTTAGCTTACAGAAA+AGG | - | chr3_4:78910775-78910794 | None:intergenic | 20.0% |
| !! | AACAAATTGAGACAATATTT+AGG | - | chr3_4:78911189-78911208 | None:intergenic | 20.0% |
| !!! | CTATAGTATTTTTCTATTTG+AGG | + | chr3_4:78911238-78911257 | Msa0525370:intron | 20.0% |
| !!! | AACATGGGTTTTAAATTTGT+TGG | + | chr3_4:78906809-78906828 | Msa0525370:intron | 25.0% |
| !!! | ACATGGGTTTTAAATTTGTT+GGG | + | chr3_4:78906810-78906829 | Msa0525370:intron | 25.0% |
| !! | GTTTGTAGATTTTGCTTTAA+CGG | + | chr3_4:78907126-78907145 | Msa0525370:intron | 25.0% |
| !!! | GTTTTGGTTAAAGATCTTTA+TGG | + | chr3_4:78907319-78907338 | Msa0525370:intron | 25.0% |
| ! | TTTGGTTAAAGATCTTTATG+GGG | + | chr3_4:78907321-78907340 | Msa0525370:intron | 25.0% |
| ! | ATGTATGTAACTACACTATT+TGG | + | chr3_4:78907462-78907481 | Msa0525370:intron | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | + | chr3_4:78907650-78907669 | Msa0525370:intron | 25.0% |
| ! | CTGTTCTTAAAATAAGAATC+AGG | + | chr3_4:78907783-78907802 | Msa0525370:intron | 25.0% |
| ! | ATAAGAATCAGGAAAGTTTA+TGG | + | chr3_4:78907794-78907813 | Msa0525370:intron | 25.0% |
| ! | CAAGTCTAATTTCTGATTAT+GGG | + | chr3_4:78908043-78908062 | Msa0525370:intron | 25.0% |
| ! | AAGTCTAATTTCTGATTATG+GGG | + | chr3_4:78908044-78908063 | Msa0525370:intron | 25.0% |
| ! | ATACTTCAATCAAAATACGA+TGG | + | chr3_4:78908107-78908126 | Msa0525370:CDS | 25.0% |
| ! | ATAAAAAACTTAACCATCAC+GGG | - | chr3_4:78908240-78908259 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAGAACAGAAA+AGG | - | chr3_4:78908423-78908442 | None:intergenic | 25.0% |
| !!! | TATGCCAATTAGTCTTATTA+TGG | + | chr3_4:78908444-78908463 | Msa0525370:intron | 25.0% |
| ! | TGAAAACCTCATGAATTAAA+AGG | + | chr3_4:78908864-78908883 | Msa0525370:intron | 25.0% |
| ! | TCATGCTGAAAATGAATTTA+AGG | + | chr3_4:78908903-78908922 | Msa0525370:intron | 25.0% |
| ! | GAATTGTAGTATTTGAATAG+AGG | + | chr3_4:78909128-78909147 | Msa0525370:intron | 25.0% |
| ! | GTTAACCATTATAATTGTTG+AGG | + | chr3_4:78909161-78909180 | Msa0525370:intron | 25.0% |
| ! | TAACCATTATAATTGTTGAG+GGG | + | chr3_4:78909163-78909182 | Msa0525370:intron | 25.0% |
| ! | TGTAAATTTATGTTTACCGA+TGG | - | chr3_4:78909403-78909422 | None:intergenic | 25.0% |
| ! | TCGGTAAACATAAATTTACA+AGG | + | chr3_4:78909403-78909422 | Msa0525370:intron | 25.0% |
| !! | TGTTAACTTAACCTTTTAAC+AGG | - | chr3_4:78910111-78910130 | None:intergenic | 25.0% |
| ! | AAACTAATATTTAGCACAAG+TGG | + | chr3_4:78910799-78910818 | Msa0525370:intron | 25.0% |
| ! | ATATATAAGCATAGTGCAAA+AGG | - | chr3_4:78910878-78910897 | None:intergenic | 25.0% |
| ! | ACAAAAAGGCAAAAATGTAA+GGG | - | chr3_4:78911340-78911359 | None:intergenic | 25.0% |
| ! | TACAAAAAGGCAAAAATGTA+AGG | - | chr3_4:78911341-78911360 | None:intergenic | 25.0% |
| !! | ACATTTTTGCCTTTTTGTAT+AGG | + | chr3_4:78911342-78911361 | Msa0525370:intron | 25.0% |
| !! | ATAATAATCCATTTTCTCCA+CGG | - | chr3_4:78911392-78911411 | None:intergenic | 25.0% |
| !!! | AAAATGGATTATTATGTTCC+TGG | + | chr3_4:78911397-78911416 | Msa0525370:CDS | 25.0% |
| ! | CTCCTATGTAACTATAAAAA+CGG | + | chr3_4:78911571-78911590 | Msa0525370:three_prime_UTR | 25.0% |
| !!! | AACCGTTTTTATAGTTACAT+AGG | - | chr3_4:78911576-78911595 | None:intergenic | 25.0% |
| ! | ATAAAAACGGTTTGTACATA+AGG | + | chr3_4:78911584-78911603 | Msa0525370:three_prime_UTR | 25.0% |
| ! | TAAAAACGGTTTGTACATAA+GGG | + | chr3_4:78911585-78911604 | Msa0525370:three_prime_UTR | 25.0% |
| !! | AGTTAAACACATGATTTGTA+TGG | - | chr3_4:78911689-78911708 | None:intergenic | 25.0% |
| ! | TCAATTTTCAATAGATACCG+TGG | + | chr3_4:78906578-78906597 | Msa0525370:five_prime_UTR | 30.0% |
| ACAATTAGCGCAATAATAGA+TGG | - | chr3_4:78906729-78906748 | None:intergenic | 30.0% | |
| TTCAGCTGAATATTCATTTG+AGG | + | chr3_4:78906860-78906879 | Msa0525370:intron | 30.0% | |
| ATTGGAAAGATTATGTCCAT+AGG | + | chr3_4:78906951-78906970 | Msa0525370:intron | 30.0% | |
| AGAATTTGAACTATGTCACA+AGG | - | chr3_4:78907003-78907022 | None:intergenic | 30.0% | |
| CTGTTAACTACTTTGTTACA+AGG | + | chr3_4:78907185-78907204 | Msa0525370:CDS | 30.0% | |
| TTAACTACTTTGTTACAAGG+AGG | + | chr3_4:78907188-78907207 | Msa0525370:CDS | 30.0% | |
| AAAAGAGAAGAATCAACATG+AGG | - | chr3_4:78907391-78907410 | None:intergenic | 30.0% | |
| !!! | TGGTCATGACTTTTTTGATA+TGG | + | chr3_4:78907482-78907501 | Msa0525370:intron | 30.0% |
| !!! | ATGACTTTTTTGATATGGTG+TGG | + | chr3_4:78907487-78907506 | Msa0525370:intron | 30.0% |
| !!! | TGACTTTTTTGATATGGTGT+GGG | + | chr3_4:78907488-78907507 | Msa0525370:intron | 30.0% |
| TCATGTACGATATTTGATGT+GGG | + | chr3_4:78907573-78907592 | Msa0525370:intron | 30.0% | |
| ATATTTGATGTGGGTATGTT+TGG | + | chr3_4:78907582-78907601 | Msa0525370:intron | 30.0% | |
| ! | TTAAGTTTCAAGTGTACGAA+GGG | - | chr3_4:78907646-78907665 | None:intergenic | 30.0% |
| ! | TTTAAGTTTCAAGTGTACGA+AGG | - | chr3_4:78907647-78907666 | None:intergenic | 30.0% |
| CACAACTTATTGACAGTATT+TGG | + | chr3_4:78907722-78907741 | Msa0525370:intron | 30.0% | |
| GCAAGTCTAATTTCTGATTA+TGG | + | chr3_4:78908042-78908061 | Msa0525370:intron | 30.0% | |
| TAGTTGAAACAAATGCTGTA+TGG | + | chr3_4:78908262-78908281 | Msa0525370:intron | 30.0% | |
| !!! | TTATTTTTAGTCTTGTGCAG+TGG | - | chr3_4:78908343-78908362 | None:intergenic | 30.0% |
| AGGACCATAATAAGACTAAT+TGG | - | chr3_4:78908451-78908470 | None:intergenic | 30.0% | |
| AAGGATATCTATTTCGTAGT+AGG | - | chr3_4:78908584-78908603 | None:intergenic | 30.0% | |
| TTCATTGTTAGATCTGCATT+CGG | + | chr3_4:78908626-78908645 | Msa0525370:intron | 30.0% | |
| !!! | GATCAGAAACTAGTTTTATG+AGG | + | chr3_4:78908735-78908754 | Msa0525370:intron | 30.0% |
| ! | ATTGTTTTCATGCAAACACT+AGG | + | chr3_4:78908813-78908832 | Msa0525370:intron | 30.0% |
| ! | TTGTTTTCATGCAAACACTA+GGG | + | chr3_4:78908814-78908833 | Msa0525370:intron | 30.0% |
| !! | TCAGATCCTTTTAATTCATG+AGG | - | chr3_4:78908873-78908892 | None:intergenic | 30.0% |
| ! | TTATTTTCCTATACTCTGCA+GGG | - | chr3_4:78909000-78909019 | None:intergenic | 30.0% |
| TTGTATTGTCCTTGATATAG+CGG | + | chr3_4:78909200-78909219 | Msa0525370:intron | 30.0% | |
| GAGGAATTCCATGTAAAAAT+TGG | + | chr3_4:78909266-78909285 | Msa0525370:intron | 30.0% | |
| ! | CTGGAAAACCAATTTTTACA+TGG | - | chr3_4:78909277-78909296 | None:intergenic | 30.0% |
| ! | TTCATCTAAGCATTGCATTT+AGG | + | chr3_4:78909448-78909467 | Msa0525370:intron | 30.0% |
| TACTTCACAAGATTTACTCA+TGG | - | chr3_4:78909569-78909588 | None:intergenic | 30.0% | |
| TTCTCAAAAGATCAAAGATG+TGG | + | chr3_4:78909790-78909809 | Msa0525370:CDS | 30.0% | |
| AAATCTATATACGGATCTTG+AGG | + | chr3_4:78909969-78909988 | Msa0525370:intron | 30.0% | |
| TTTAACAGGATATGCTATCA+AGG | - | chr3_4:78910097-78910116 | None:intergenic | 30.0% | |
| TGATAGCATATCCTGTTAAA+AGG | + | chr3_4:78910097-78910116 | Msa0525370:intron | 30.0% | |
| ! | GGAATACAAAGTTTCTTTTC+TGG | - | chr3_4:78910141-78910160 | None:intergenic | 30.0% |
| ! | AGGAACAATTACCATTTTGT+TGG | + | chr3_4:78910290-78910309 | Msa0525370:intron | 30.0% |
| ! | ACAATTACCATTTTGTTGGT+TGG | + | chr3_4:78910294-78910313 | Msa0525370:intron | 30.0% |
| !!! | ATTTTGTAGACTTGTTAAGG+TGG | - | chr3_4:78910478-78910497 | None:intergenic | 30.0% |
| !!! | GTGATTTTGTAGACTTGTTA+AGG | - | chr3_4:78910481-78910500 | None:intergenic | 30.0% |
| AAGTGATGTAAGATAGAGAA+GGG | - | chr3_4:78910556-78910575 | None:intergenic | 30.0% | |
| TAAGTGATGTAAGATAGAGA+AGG | - | chr3_4:78910557-78910576 | None:intergenic | 30.0% | |
| !!! | ACGCAATCAAAACTTTTTCA+CGG | - | chr3_4:78910597-78910616 | None:intergenic | 30.0% |
| AACAGTTGTGTACTTAAGAA+TGG | + | chr3_4:78910624-78910643 | Msa0525370:intron | 30.0% | |
| ATGTAGGTAGAATTTGAACA+AGG | + | chr3_4:78910688-78910707 | Msa0525370:intron | 30.0% | |
| ! | AAGGAAAGTATGCAGTTTAT+TGG | + | chr3_4:78910707-78910726 | Msa0525370:intron | 30.0% |
| TGATTCTCTGGTCTAATATT+TGG | - | chr3_4:78910827-78910846 | None:intergenic | 30.0% | |
| TGCTTATATATATCTCCATG+TGG | + | chr3_4:78910887-78910906 | Msa0525370:intron | 30.0% | |
| TATATATCTCCATGTGGTAT+AGG | + | chr3_4:78910893-78910912 | Msa0525370:intron | 30.0% | |
| TCAAATGGAACAAAGACAAA+GGG | - | chr3_4:78911102-78911121 | None:intergenic | 30.0% | |
| CAAAAAGGCAAAAATGTAAG+GGG | - | chr3_4:78911339-78911358 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTTTTGTATAGG+TGG | + | chr3_4:78911345-78911364 | Msa0525370:intron | 30.0% |
| ! | TAATAATCCATTTTCTCCAC+GGG | - | chr3_4:78911391-78911410 | None:intergenic | 30.0% |
| AGCGGAACAAAAGATAAATT+CGG | - | chr3_4:78911546-78911565 | None:intergenic | 30.0% | |
| GGTTGTAATCCGAAAACATT+GGG | - | chr3_4:78906460-78906479 | None:intergenic | 35.0% | |
| ! | TAGAACTGACTTCGTCAAAA+CGG | - | chr3_4:78906554-78906573 | None:intergenic | 35.0% |
| CATGAAATGATTCAGAACCA+CGG | - | chr3_4:78906598-78906617 | None:intergenic | 35.0% | |
| TGAAAGGAAATTGAGGTGAA+AGG | - | chr3_4:78906621-78906640 | None:intergenic | 35.0% | |
| CTAAAACAATGAAGAAGGTG+CGG | - | chr3_4:78906694-78906713 | None:intergenic | 35.0% | |
| AGTTCAAATTCTCTCCTAGA+CGG | + | chr3_4:78907011-78907030 | Msa0525370:intron | 35.0% | |
| ! | TCATCATTTTACAACCGTCT+AGG | - | chr3_4:78907028-78907047 | None:intergenic | 35.0% |
| TTTCTACTTGCACTTCCAAA+AGG | - | chr3_4:78907367-78907386 | None:intergenic | 35.0% | |
| CTCATGTACGATATTTGATG+TGG | + | chr3_4:78907572-78907591 | Msa0525370:intron | 35.0% | |
| ! | CAATTCGTAACCCTGTATTT+TGG | + | chr3_4:78907950-78907969 | Msa0525370:CDS | 35.0% |
| AATCAAAATACGATGGCTCA+TGG | + | chr3_4:78908114-78908133 | Msa0525370:CDS | 35.0% | |
| AATATGAGGGGCAAGAAATA+AGG | - | chr3_4:78908208-78908227 | None:intergenic | 35.0% | |
| ! | TAAAGGTGTGATTCTCTTCT+AGG | + | chr3_4:78908299-78908318 | Msa0525370:intron | 35.0% |
| TTATTATGGTCCTGCATCAT+AGG | + | chr3_4:78908458-78908477 | Msa0525370:intron | 35.0% | |
| CAAGTAGAAATACCTACATC+CGG | + | chr3_4:78908489-78908508 | Msa0525370:CDS | 35.0% | |
| AAGTAGAAATACCTACATCC+GGG | + | chr3_4:78908490-78908509 | Msa0525370:CDS | 35.0% | |
| ! | TCCATGAAACTCTAGAGAAA+TGG | + | chr3_4:78908946-78908965 | Msa0525370:intron | 35.0% |
| !! | TCCATTTCTCTAGAGTTTCA+TGG | - | chr3_4:78908950-78908969 | None:intergenic | 35.0% |
| !! | CTTATTTTCCTATACTCTGC+AGG | - | chr3_4:78909001-78909020 | None:intergenic | 35.0% |
| ! | TTGGGCATGTCAAAGAATTT+TGG | + | chr3_4:78909063-78909082 | Msa0525370:intron | 35.0% |
| TGTGACTGACTAATTAAGCA+GGG | - | chr3_4:78909106-78909125 | None:intergenic | 35.0% | |
| !! | AAAAGCATTCCGCTATATCA+AGG | - | chr3_4:78909212-78909231 | None:intergenic | 35.0% |
| ! | GTGTTTTTCATCCTCATAGA+TGG | + | chr3_4:78909244-78909263 | Msa0525370:intron | 35.0% |
| ! | TTTTTCATCCTCATAGATGG+AGG | + | chr3_4:78909247-78909266 | Msa0525370:intron | 35.0% |
| TAAAACACACCTTCTGATGA+AGG | - | chr3_4:78909306-78909325 | None:intergenic | 35.0% | |
| CATATGGTATATCCACTATC+CGG | - | chr3_4:78909362-78909381 | None:intergenic | 35.0% | |
| TGGATATACCATATGCTATC+TGG | + | chr3_4:78909367-78909386 | Msa0525370:intron | 35.0% | |
| ! | ATCTAAGCATTGCATTTAGG+AGG | + | chr3_4:78909451-78909470 | Msa0525370:intron | 35.0% |
| ATAACAGACCTGCAGAATAT+GGG | - | chr3_4:78909634-78909653 | None:intergenic | 35.0% | |
| AATAACAGACCTGCAGAATA+TGG | - | chr3_4:78909635-78909654 | None:intergenic | 35.0% | |
| ATGGAAAAAATCTCAGGTAC+CGG | - | chr3_4:78909659-78909678 | None:intergenic | 35.0% | |
| !!! | TACCTGAGATTTTTTCCATC+TGG | + | chr3_4:78909660-78909679 | Msa0525370:CDS | 35.0% |
| !!! | ACCTGAGATTTTTTCCATCT+GGG | + | chr3_4:78909661-78909680 | Msa0525370:CDS | 35.0% |
| TTGTAAAGAAACTTCCCAGA+TGG | - | chr3_4:78909678-78909697 | None:intergenic | 35.0% | |
| ATCTGGGAAGTTTCTTTACA+AGG | + | chr3_4:78909677-78909696 | Msa0525370:CDS | 35.0% | |
| GTTCTCATACAATCACATAC+AGG | - | chr3_4:78909749-78909768 | None:intergenic | 35.0% | |
| GCTATTGATATCATCATTGC+AGG | + | chr3_4:78909997-78910016 | Msa0525370:intron | 35.0% | |
| GAAACTTTGTATTCCCTATC+TGG | + | chr3_4:78910146-78910165 | Msa0525370:intron | 35.0% | |
| TTTGTATTCCCTATCTGGTT+AGG | + | chr3_4:78910151-78910170 | Msa0525370:intron | 35.0% | |
| AAATCCAACCTAACCAGATA+GGG | - | chr3_4:78910162-78910181 | None:intergenic | 35.0% | |
| TTGATCTATTCTCTTAGCAG+AGG | - | chr3_4:78910200-78910219 | None:intergenic | 35.0% | |
| GCTTCTTCTAATGCTTTAAC+AGG | + | chr3_4:78910270-78910289 | Msa0525370:intron | 35.0% | |
| ATGAATGCCAACCAACAAAA+TGG | - | chr3_4:78910304-78910323 | None:intergenic | 35.0% | |
| GTTGGTTGGCATTCATTAAT+TGG | + | chr3_4:78910308-78910327 | Msa0525370:intron | 35.0% | |
| TTCATTAATCCTCATCTACC+AGG | + | chr3_4:78910435-78910454 | Msa0525370:intron | 35.0% | |
| TCATTAATCCTCATCTACCA+GGG | + | chr3_4:78910436-78910455 | Msa0525370:intron | 35.0% | |
| ! | GGTCGATCACAATTACATTT+TGG | - | chr3_4:78910535-78910554 | None:intergenic | 35.0% |
| CTATCTTACATCACTTACAC+TGG | + | chr3_4:78910560-78910579 | Msa0525370:intron | 35.0% | |
| ! | GTTTATTAGCCTCTGAATGT+AGG | + | chr3_4:78910672-78910691 | Msa0525370:intron | 35.0% |
| CAAATTCTACCTACATTCAG+AGG | - | chr3_4:78910684-78910703 | None:intergenic | 35.0% | |
| CAAACGTGTCAAAAAAGAGT+TGG | + | chr3_4:78910847-78910866 | Msa0525370:intron | 35.0% | |
| CTCAAATGGAACAAAGACAA+AGG | - | chr3_4:78911103-78911122 | None:intergenic | 35.0% | |
| CTTTGTCTTTGTTCCATTTG+AGG | + | chr3_4:78911101-78911120 | Msa0525370:CDS | 35.0% | |
| TAAAACTGTACCTCCTCAAA+TGG | - | chr3_4:78911117-78911136 | None:intergenic | 35.0% | |
| ATGTCTCCACCTATACAAAA+AGG | - | chr3_4:78911354-78911373 | None:intergenic | 35.0% | |
| AATTGAACCAGGTATTTCAG+GGG | - | chr3_4:78911433-78911452 | None:intergenic | 35.0% | |
| CAATTGAACCAGGTATTTCA+GGG | - | chr3_4:78911434-78911453 | None:intergenic | 35.0% | |
| ACAATTGAACCAGGTATTTC+AGG | - | chr3_4:78911435-78911454 | None:intergenic | 35.0% | |
| ! | GAGGTATTTACAATTGAACC+AGG | - | chr3_4:78911444-78911463 | None:intergenic | 35.0% |
| ! | AGTACGGTACCCAATGTTTT+CGG | + | chr3_4:78906448-78906467 | Msa0525370:five_prime_UTR | 40.0% |
| CGGTTGTAATCCGAAAACAT+TGG | - | chr3_4:78906461-78906480 | None:intergenic | 40.0% | |
| CCATGAGTGAAAGGAAATTG+AGG | - | chr3_4:78906628-78906647 | None:intergenic | 40.0% | |
| CCTCAATTTCCTTTCACTCA+TGG | + | chr3_4:78906625-78906644 | Msa0525370:exon | 40.0% | |
| ! | GAATATTCAGCTGAAAGCAC+CGG | - | chr3_4:78906855-78906874 | None:intergenic | 40.0% |
| AACAATGAGCTGAAAGCCTA+TGG | - | chr3_4:78906970-78906989 | None:intergenic | 40.0% | |
| ! | AAACCGATTCCAACTCAGAA+GGG | - | chr3_4:78907153-78907172 | None:intergenic | 40.0% |
| ! | AAAACCGATTCCAACTCAGA+AGG | - | chr3_4:78907154-78907173 | None:intergenic | 40.0% |
| ! | GTACATGAGCTATCTGAAGT+AGG | - | chr3_4:78907561-78907580 | None:intergenic | 40.0% |
| CTCAAATCCGTTAGAACCAA+CGG | - | chr3_4:78907755-78907774 | None:intergenic | 40.0% | |
| TCGAATGACTCCATATGACA+TGG | + | chr3_4:78907891-78907910 | Msa0525370:CDS | 40.0% | |
| CGAATGACTCCATATGACAT+GGG | + | chr3_4:78907892-78907911 | Msa0525370:CDS | 40.0% | |
| ATGCATTGCGCCAAAATACA+GGG | - | chr3_4:78907963-78907982 | None:intergenic | 40.0% | |
| !!! | GGCTTTTTTATGAAGCTCTC+TGG | + | chr3_4:78908065-78908084 | Msa0525370:intron | 40.0% |
| !! | TTTTATGAAGCTCTCTGGAG+CGG | + | chr3_4:78908070-78908089 | Msa0525370:intron | 40.0% |
| TTCTTGCCCCTCATATTGAT+TGG | + | chr3_4:78908211-78908230 | Msa0525370:intron | 40.0% | |
| TGCATAAAGACCTATGATGC+AGG | - | chr3_4:78908471-78908490 | None:intergenic | 40.0% | |
| AATCACTAATCCAGTTCACG+TGG | + | chr3_4:78908532-78908551 | Msa0525370:CDS | 40.0% | |
| ! | GGGTGTTACACACTTTATAG+AGG | - | chr3_4:78909035-78909054 | None:intergenic | 40.0% |
| !! | TGTAACACCCAAGAGTGTTT+GGG | + | chr3_4:78909045-78909064 | Msa0525370:intron | 40.0% |
| CTGTGACTGACTAATTAAGC+AGG | - | chr3_4:78909107-78909126 | None:intergenic | 40.0% | |
| GTGCCCCTCAACAATTATAA+TGG | - | chr3_4:78909169-78909188 | None:intergenic | 40.0% | |
| ! | TTATAATTGTTGAGGGGCAC+TGG | + | chr3_4:78909169-78909188 | Msa0525370:intron | 40.0% |
| ATGGAATTCCTCCATCTATG+AGG | - | chr3_4:78909258-78909277 | None:intergenic | 40.0% | |
| ACTCATCTATTCCTTGTGTG+TGG | + | chr3_4:78909325-78909344 | Msa0525370:intron | 40.0% | |
| AAGAGGAACCAGATAGCATA+TGG | - | chr3_4:78909378-78909397 | None:intergenic | 40.0% | |
| TATGTTTACCGATGGCAAAG+AGG | - | chr3_4:78909395-78909414 | None:intergenic | 40.0% | |
| TAACAGACCTGCAGAATATG+GGG | - | chr3_4:78909633-78909652 | None:intergenic | 40.0% | |
| TTCTGCAGGTCTGTTATTAC+CGG | + | chr3_4:78909637-78909656 | Msa0525370:intron | 40.0% | |
| TCCCAGATGGAAAAAATCTC+AGG | - | chr3_4:78909665-78909684 | None:intergenic | 40.0% | |
| ! | ACCAAAGACAGAGTCTGTTT+TGG | - | chr3_4:78909840-78909859 | None:intergenic | 40.0% |
| AAAACAGACTCTGTCTTTGG+TGG | + | chr3_4:78909839-78909858 | Msa0525370:CDS | 40.0% | |
| CTACACATTGACAGATGACA+AGG | + | chr3_4:78909865-78909884 | Msa0525370:CDS | 40.0% | |
| ATGCGTATCCTCAAAACAGT+AGG | - | chr3_4:78910055-78910074 | None:intergenic | 40.0% | |
| TATTCCCTATCTGGTTAGGT+TGG | + | chr3_4:78910155-78910174 | Msa0525370:intron | 40.0% | |
| CAAATCCAACCTAACCAGAT+AGG | - | chr3_4:78910163-78910182 | None:intergenic | 40.0% | |
| GTTGTGATATAACATAGCCC+TGG | - | chr3_4:78910456-78910475 | None:intergenic | 40.0% | |
| TTGACACGTTTGTGATTCTC+TGG | - | chr3_4:78910839-78910858 | None:intergenic | 40.0% | |
| TCCATGTGGTATAGGTTAAG+AGG | + | chr3_4:78910901-78910920 | Msa0525370:intron | 40.0% | |
| TCCTCTTAACCTATACCACA+TGG | - | chr3_4:78910905-78910924 | None:intergenic | 40.0% | |
| AGGTTAAGAGGAACAACTAC+AGG | + | chr3_4:78910913-78910932 | Msa0525370:intron | 40.0% | |
| GGTTAAGAGGAACAACTACA+GGG | + | chr3_4:78910914-78910933 | Msa0525370:intron | 40.0% | |
| GTTAAGAGGAACAACTACAG+GGG | + | chr3_4:78910915-78910934 | Msa0525370:CDS | 40.0% | |
| TTGATCTCACTTGTCACTAG+TGG | + | chr3_4:78910955-78910974 | Msa0525370:CDS | 40.0% | |
| ACATCTGAAGAGGACATTCT+TGG | + | chr3_4:78911000-78911019 | Msa0525370:CDS | 40.0% | |
| TGTCTTTGTTCCATTTGAGG+AGG | + | chr3_4:78911104-78911123 | Msa0525370:CDS | 40.0% | |
| ! | ATCTCTTTTGAATTTGCCCG+TGG | + | chr3_4:78911372-78911391 | Msa0525370:CDS | 40.0% |
| AATTTGCGTACTTGCATGTG+TGG | + | chr3_4:78911488-78911507 | Msa0525370:three_prime_UTR | 40.0% | |
| ! | AGTTACATAGGAGCACAAAG+CGG | - | chr3_4:78911564-78911583 | None:intergenic | 40.0% |
| ! | GTTTTCGGATTACAACCGTG+TGG | + | chr3_4:78906463-78906482 | Msa0525370:five_prime_UTR | 45.0% |
| AACGTAAGACACCAGAGGTT+TGG | - | chr3_4:78906522-78906541 | None:intergenic | 45.0% | |
| GTATCAACGTAAGACACCAG+AGG | - | chr3_4:78906527-78906546 | None:intergenic | 45.0% | |
| GACACACTTCGACATCAAAC+AGG | - | chr3_4:78907095-78907114 | None:intergenic | 45.0% | |
| TTTAACGGTCCCTTCTGAGT+TGG | + | chr3_4:78907141-78907160 | Msa0525370:CDS | 45.0% | |
| !! | CTGAGTTGGAATCGGTTTTG+AGG | + | chr3_4:78907155-78907174 | Msa0525370:CDS | 45.0% |
| ACTTTGTTACAAGGAGGCCA+TGG | + | chr3_4:78907194-78907213 | Msa0525370:CDS | 45.0% | |
| !! | GTGGGACTAGTTACAATGTG+CGG | + | chr3_4:78907506-78907525 | Msa0525370:intron | 45.0% |
| !! | TGGGACTAGTTACAATGTGC+GGG | + | chr3_4:78907507-78907526 | Msa0525370:intron | 45.0% |
| !! | AGTATTTGGTGCATCACCGT+TGG | + | chr3_4:78907736-78907755 | Msa0525370:intron | 45.0% |
| !! | TGCATCACCGTTGGTTCTAA+CGG | + | chr3_4:78907745-78907764 | Msa0525370:intron | 45.0% |
| ! | GAGGCTTTTCCCATGTCATA+TGG | - | chr3_4:78907904-78907923 | None:intergenic | 45.0% |
| ! | CCATTTTCGACACACACAAG+AGG | - | chr3_4:78907923-78907942 | None:intergenic | 45.0% |
| CCTCTTGTGTGTGTCGAAAA+TGG | + | chr3_4:78907920-78907939 | Msa0525370:CDS | 45.0% | |
| CTTGTGTGTGTCGAAAATGG+CGG | + | chr3_4:78907923-78907942 | Msa0525370:CDS | 45.0% | |
| CATGCATTGCGCCAAAATAC+AGG | - | chr3_4:78907964-78907983 | None:intergenic | 45.0% | |
| CAAAATACGATGGCTCATGG+CGG | + | chr3_4:78908117-78908136 | Msa0525370:CDS | 45.0% | |
| TTACCGTCAAATCGCAACCT+TGG | - | chr3_4:78908161-78908180 | None:intergenic | 45.0% | |
| GGGTCACCAATCAATATGAG+GGG | - | chr3_4:78908220-78908239 | None:intergenic | 45.0% | |
| CGGGTCACCAATCAATATGA+GGG | - | chr3_4:78908221-78908240 | None:intergenic | 45.0% | |
| ACGGGTCACCAATCAATATG+AGG | - | chr3_4:78908222-78908241 | None:intergenic | 45.0% | |
| ! | TATTGATTGGTGACCCGTGA+TGG | + | chr3_4:78908224-78908243 | Msa0525370:intron | 45.0% |
| !! | TTAGTCTTGTGCAGTGGAGA+GGG | - | chr3_4:78908337-78908356 | None:intergenic | 45.0% |
| !! | TTTAGTCTTGTGCAGTGGAG+AGG | - | chr3_4:78908338-78908357 | None:intergenic | 45.0% |
| AGAAATACCTACATCCGGGT+TGG | + | chr3_4:78908494-78908513 | Msa0525370:CDS | 45.0% | |
| TGAATGCATACCACGTGAAC+TGG | - | chr3_4:78908545-78908564 | None:intergenic | 45.0% | |
| !! | GTGTAACACCCAAGAGTGTT+TGG | + | chr3_4:78909044-78909063 | Msa0525370:intron | 45.0% |
| TGACATGCCCAAACACTCTT+GGG | - | chr3_4:78909055-78909074 | None:intergenic | 45.0% | |
| TTGACATGCCCAAACACTCT+TGG | - | chr3_4:78909056-78909075 | None:intergenic | 45.0% | |
| CTATTCCTTGTGTGTGGTGT+TGG | + | chr3_4:78909331-78909350 | Msa0525370:intron | 45.0% | |
| ATCAACCAACACCACACACA+AGG | - | chr3_4:78909339-78909358 | None:intergenic | 45.0% | |
| ! | ATCTGGTTCCTCTTTGCCAT+CGG | + | chr3_4:78909384-78909403 | Msa0525370:intron | 45.0% |
| AATTTCCCCCCATATTCTGC+AGG | + | chr3_4:78909623-78909642 | Msa0525370:intron | 45.0% | |
| AACAGACCTGCAGAATATGG+GGG | - | chr3_4:78909632-78909651 | None:intergenic | 45.0% | |
| GCCAAAACAGACTCTGTCTT+TGG | + | chr3_4:78909836-78909855 | Msa0525370:CDS | 45.0% | |
| !!! | CTGTTTTGAGGATACGCATG+AGG | + | chr3_4:78910056-78910075 | Msa0525370:CDS | 45.0% |
| TGAGGATACGCATGAGGTAA+TGG | + | chr3_4:78910062-78910081 | Msa0525370:intron | 45.0% | |
| TCTCTTAGCAGAGGACATAC+TGG | - | chr3_4:78910191-78910210 | None:intergenic | 45.0% | |
| TAACATAGCCCTGGTAGATG+AGG | - | chr3_4:78910447-78910466 | None:intergenic | 45.0% | |
| CAACTACAGGGGCTAACAAT+AGG | + | chr3_4:78910926-78910945 | Msa0525370:CDS | 45.0% | |
| TACAGGGGCTAACAATAGGA+TGG | + | chr3_4:78910930-78910949 | Msa0525370:CDS | 45.0% | |
| TAGTGGTGTGGACACTAATG+AGG | + | chr3_4:78910972-78910991 | Msa0525370:CDS | 45.0% | |
| TGAGGCAAGTACATCTGAAG+AGG | + | chr3_4:78910990-78911009 | Msa0525370:CDS | 45.0% | |
| GACATTCTTGGAGTCGTTGA+AGG | + | chr3_4:78911012-78911031 | Msa0525370:CDS | 45.0% | |
| TTCTTGGAGTCGTTGAAGGA+TGG | + | chr3_4:78911016-78911035 | Msa0525370:CDS | 45.0% | |
| GAATTTGCCCGTGGAGAAAA+TGG | + | chr3_4:78911381-78911400 | Msa0525370:CDS | 45.0% | |
| !!! | ATTCATATATAATTTTAAAT+AGG | - | chr3_4:78909487-78909506 | None:intergenic | 5.0% |
| TCTGACATGCACATGCCACA+CGG | - | chr3_4:78906481-78906500 | None:intergenic | 50.0% | |
| ATTCCGCGAAACCAAACCTC+TGG | + | chr3_4:78906508-78906527 | Msa0525370:five_prime_UTR | 50.0% | |
| ! | ACACCAGAGGTTTGGTTTCG+CGG | - | chr3_4:78906514-78906533 | None:intergenic | 50.0% |
| TTCCTTTCACTCATGGCGTC+AGG | + | chr3_4:78906632-78906651 | Msa0525370:exon | 50.0% | |
| AACCTGACGCCATGAGTGAA+AGG | - | chr3_4:78906637-78906656 | None:intergenic | 50.0% | |
| ! | GGTCCCTTCTGAGTTGGAAT+CGG | + | chr3_4:78907147-78907166 | Msa0525370:CDS | 50.0% |
| GCGTTGTACATACCAAGCCA+TGG | - | chr3_4:78907214-78907233 | None:intergenic | 50.0% | |
| ACCAGATGAGCTGCTCTTTG+AGG | + | chr3_4:78907423-78907442 | Msa0525370:CDS | 50.0% | |
| ACCTCAAAGAGCAGCTCATC+TGG | - | chr3_4:78907427-78907446 | None:intergenic | 50.0% | |
| TTGGCGCAATGCATGCTTGA+AGG | + | chr3_4:78907969-78907988 | Msa0525370:CDS | 50.0% | |
| TGGCGCAATGCATGCTTGAA+GGG | + | chr3_4:78907970-78907989 | Msa0525370:CDS | 50.0% | |
| GCAATGCATGCTTGAAGGGT+TGG | + | chr3_4:78907974-78907993 | Msa0525370:CDS | 50.0% | |
| TTGGCAGGTAAGGTCAATGG+AGG | + | chr3_4:78907993-78908012 | Msa0525370:intron | 50.0% | |
| ! | ATGGCTCATGGCGGAAAATG+TGG | + | chr3_4:78908126-78908145 | Msa0525370:CDS | 50.0% |
| GGCGGAAAATGTGGCTCTTA+CGG | + | chr3_4:78908135-78908154 | Msa0525370:CDS | 50.0% | |
| AAATGTGGCTCTTACGGCCA+AGG | + | chr3_4:78908141-78908160 | Msa0525370:CDS | 50.0% | |
| TGCTCTTCCCTGCAGAGTAT+AGG | + | chr3_4:78908990-78909009 | Msa0525370:intron | 50.0% | |
| ! | ACACCTTCTGATGAAGGTGC+TGG | - | chr3_4:78909300-78909319 | None:intergenic | 50.0% |
| !! | GTGTGTGGTGTTGGTTGATC+CGG | + | chr3_4:78909340-78909359 | Msa0525370:intron | 50.0% |
| !! | GTGTTGGTTGATCCGGATAG+TGG | + | chr3_4:78909347-78909366 | Msa0525370:intron | 50.0% |
| ACAGACCTGCAGAATATGGG+GGG | - | chr3_4:78909631-78909650 | None:intergenic | 50.0% | |
| AAAACAGTAGGTCGCATGCC+TGG | - | chr3_4:78910043-78910062 | None:intergenic | 50.0% | |
| ! | GCATGCGACCTACTGTTTTG+AGG | + | chr3_4:78910044-78910063 | Msa0525370:CDS | 50.0% |
| CTCACTTGTCACTAGTGGTG+TGG | + | chr3_4:78910960-78910979 | Msa0525370:CDS | 50.0% | |
| ATGTGAGACTGCTGGCACAT+CGG | - | chr3_4:78911064-78911083 | None:intergenic | 50.0% | |
| TGCCAGCAGTCTCACATAAG+AGG | + | chr3_4:78911067-78911086 | Msa0525370:CDS | 50.0% | |
| GCCAGCAGTCTCACATAAGA+GGG | + | chr3_4:78911068-78911087 | Msa0525370:CDS | 50.0% | |
| CCAGCAGTCTCACATAAGAG+GGG | + | chr3_4:78911069-78911088 | Msa0525370:CDS | 50.0% | |
| AATGCTGCCCCTGAAATACC+TGG | + | chr3_4:78911423-78911442 | Msa0525370:exon | 50.0% | |
| TCACTCATGGCGTCAGGTTC+AGG | + | chr3_4:78906638-78906657 | Msa0525370:exon | 55.0% | |
| ! | GAAGAAGGTGCGGATCGAAG+TGG | - | chr3_4:78906684-78906703 | None:intergenic | 55.0% |
| GTTACAAGGAGGCCATGGCT+TGG | + | chr3_4:78907199-78907218 | Msa0525370:CDS | 55.0% | |
| ! | TGCATGCTTGAAGGGTTGGC+AGG | + | chr3_4:78907978-78907997 | Msa0525370:CDS | 55.0% |
| ! | GCTTGAAGGGTTGGCAGGTA+AGG | + | chr3_4:78907983-78908002 | Msa0525370:intron | 55.0% |
| ! | GGGTTGGCAGGTAAGGTCAA+TGG | + | chr3_4:78907990-78908009 | Msa0525370:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | + | chr3_4:78908155-78908174 | Msa0525370:CDS | 55.0% | |
| TGCAACTCCAACCCGGATGT+AGG | - | chr3_4:78908504-78908523 | None:intergenic | 55.0% | |
| TCCACTCTGCAACTCCAACC+CGG | - | chr3_4:78908511-78908530 | None:intergenic | 55.0% | |
| !! | CTTCTGATGAAGGTGCTGGC+TGG | - | chr3_4:78909296-78909315 | None:intergenic | 55.0% |
| CAGCCAGCACCTTCATCAGA+AGG | + | chr3_4:78909294-78909313 | Msa0525370:intron | 55.0% | |
| GAAGCTGCTGTCCTGTATCC+AGG | + | chr3_4:78910022-78910041 | Msa0525370:CDS | 55.0% | |
| TAGGTCGCATGCCTGGATAC+AGG | - | chr3_4:78910036-78910055 | None:intergenic | 55.0% | |
| TGGAGTCGTTGAAGGATGGC+AGG | + | chr3_4:78911020-78911039 | Msa0525370:CDS | 55.0% | |
| TGTGAGACTGCTGGCACATC+GGG | - | chr3_4:78911063-78911082 | None:intergenic | 55.0% | |
| CCCCTCTTATGTGAGACTGC+TGG | - | chr3_4:78911072-78911091 | None:intergenic | 55.0% | |
| TTCAGGGGCAGCATTCAACC+AGG | - | chr3_4:78911418-78911437 | None:intergenic | 55.0% | |
| GTGCGGATCGAAGTGGTGAG+AGG | - | chr3_4:78906677-78906696 | None:intergenic | 60.0% | |
| ! | GTGAGACCTGTCGCGCCTTT+TGG | + | chr3_4:78907349-78907368 | Msa0525370:CDS | 60.0% |
| ! | GCACTTCCAAAAGGCGCGAC+AGG | - | chr3_4:78907358-78907377 | None:intergenic | 60.0% |
| ! | TCCGGGTTGGAGTTGCAGAG+TGG | + | chr3_4:78908507-78908526 | Msa0525370:CDS | 60.0% |
| GTGAGACTGCTGGCACATCG+GGG | - | chr3_4:78911062-78911081 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78906443 | 78911766 | 78906443 | ID=Msa0525370;Name=Msa0525370 |
| chr3_4 | mRNA | 78906443 | 78911766 | 78906443 | ID=Msa0525370-mRNA-1;Parent=Msa0525370;Name=Msa0525370-mRNA-1;_AED=0.22;_eAED=0.22;_QI=201|1|1|1|1|1|11|343|329 |
| chr3_4 | exon | 78906443 | 78906659 | 78906443 | ID=Msa0525370-mRNA-1:exon:23542;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78907134 | 78907220 | 78907134 | ID=Msa0525370-mRNA-1:exon:23543;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78907332 | 78907444 | 78907332 | ID=Msa0525370-mRNA-1:exon:23544;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78907883 | 78907999 | 78907883 | ID=Msa0525370-mRNA-1:exon:23545;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78908080 | 78908176 | 78908080 | ID=Msa0525370-mRNA-1:exon:23546;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78908480 | 78908553 | 78908480 | ID=Msa0525370-mRNA-1:exon:23547;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78909645 | 78909698 | 78909645 | ID=Msa0525370-mRNA-1:exon:23548;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78909785 | 78909886 | 78909785 | ID=Msa0525370-mRNA-1:exon:23549;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78910019 | 78910077 | 78910019 | ID=Msa0525370-mRNA-1:exon:23550;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78910915 | 78911125 | 78910915 | ID=Msa0525370-mRNA-1:exon:23551;Parent=Msa0525370-mRNA-1 |
| chr3_4 | exon | 78911364 | 78911766 | 78911364 | ID=Msa0525370-mRNA-1:exon:23552;Parent=Msa0525370-mRNA-1 |
| chr3_4 | five_prime_UTR | 78906443 | 78906643 | 78906443 | ID=Msa0525370-mRNA-1:five_prime_utr;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78906644 | 78906659 | 78906644 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78907134 | 78907220 | 78907134 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78907332 | 78907444 | 78907332 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78907883 | 78907999 | 78907883 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78908080 | 78908176 | 78908080 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78908480 | 78908553 | 78908480 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78909645 | 78909698 | 78909645 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78909785 | 78909886 | 78909785 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78910019 | 78910077 | 78910019 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78910915 | 78911125 | 78910915 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | CDS | 78911364 | 78911423 | 78911364 | ID=Msa0525370-mRNA-1:cds;Parent=Msa0525370-mRNA-1 |
| chr3_4 | three_prime_UTR | 78911424 | 78911766 | 78911424 | ID=Msa0525370-mRNA-1:three_prime_utr;Parent=Msa0525370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
