Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374440 | XP_003602065.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374440 | sp|Q9XI00|SKI32_ARATH | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374440 | B7FL96 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0237320 | Msa0374440 | 0.813357 | 2.666762e-51 | -8.615850e-47 |
| Msa0374360 | Msa0374440 | 0.876286 | 1.575113e-68 | -8.615850e-47 |
| Msa0374440 | Msa0374530 | 0.992093 | 2.883583e-191 | -8.615850e-47 |
| Msa0374440 | Msa0374570 | 0.991840 | 7.850704e-190 | -8.615850e-47 |
| Msa0374440 | Msa0439980 | 0.830250 | 3.264381e-55 | -8.615850e-47 |
| Msa0374440 | Msa0469920 | 0.810123 | 1.347677e-50 | -8.615850e-47 |
| Msa0374440 | Msa0525370 | 0.810780 | 9.722312e-51 | -8.615850e-47 |
| Msa0274740 | Msa0374440 | 0.813171 | 2.929377e-51 | -8.615850e-47 |
| Msa0315540 | Msa0374440 | 0.808894 | 2.474683e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374440 | MtrunA17_Chr3g0124891 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Msa0374440 | MtrunA17_Chr4g0034401 | 98.182 | 55 | 1 | 0 | 20 | 74 | 17 | 71 | 7.13e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374440 | AT1G21760.1 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Msa0374440 | AT1G21760.2 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
Find 108 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGAACCAGGTATTTC+AGG | 0.219347 | 3_1:-73919919 | None:intergenic |
| CAATTCGTAACCCTGTATTT+TGG | 0.228001 | 3_1:+73916436 | Msa0374440:CDS |
| GTGAGACCTGTCGCGCCTTT+TGG | 0.256079 | 3_1:+73915835 | Msa0374440:CDS |
| GAATTTGCCCGTGGAGAAAA+TGG | 0.273613 | 3_1:+73919868 | Msa0374440:CDS |
| CTTTGTCTTTGTTCCATTTG+AGG | 0.303655 | 3_1:+73919588 | Msa0374440:CDS |
| TCACTCATGGCGTCAGGTTC+AGG | 0.314341 | 3_1:+73915121 | Msa0374440:exon |
| TGTGAGACTGCTGGCACATC+GGG | 0.330474 | 3_1:-73919547 | None:intergenic |
| CCTCTTGTGTGTGTCGAAAA+TGG | 0.348503 | 3_1:+73916406 | Msa0374440:CDS |
| AAAATGGATTATTATGTTCC+TGG | 0.362832 | 3_1:+73919884 | Msa0374440:CDS |
| GCCAAAACAGACTCTGTCTT+TGG | 0.364430 | 3_1:+73918323 | Msa0374440:CDS |
| TTCTGCAGGTCTGTTATTAC+CGG | 0.373358 | 3_1:+73918124 | Msa0374440:intron |
| TGAATGCATACCACGTGAAC+TGG | 0.384411 | 3_1:-73917028 | None:intergenic |
| CATGCATTGCGCCAAAATAC+AGG | 0.392919 | 3_1:-73916447 | None:intergenic |
| ACCAGATGAGCTGCTCTTTG+AGG | 0.392938 | 3_1:+73915909 | Msa0374440:CDS |
| AGTTAAACACATGATTTGTA+TGG | 0.399824 | 3_1:-73920173 | None:intergenic |
| TATAAATATCGAAAGTTATG+AGG | 0.402100 | 3_1:-73919947 | None:intergenic |
| ACCAAAGACAGAGTCTGTTT+TGG | 0.404539 | 3_1:-73918324 | None:intergenic |
| TTCCTTTCACTCATGGCGTC+AGG | 0.406079 | 3_1:+73915115 | Msa0374440:exon |
| ACATCTGAAGAGGACATTCT+TGG | 0.408711 | 3_1:+73919487 | Msa0374440:CDS |
| ACCTCAAAGAGCAGCTCATC+TGG | 0.409773 | 3_1:-73915910 | None:intergenic |
| CGGCCAAGGTTGCGATTTGA+CGG | 0.413839 | 3_1:+73916641 | Msa0374440:CDS |
| AACGTTAGACACCAGAGGTT+TGG | 0.415161 | 3_1:-73915002 | None:intergenic |
| TAAAACTGTACCTCCTCAAA+TGG | 0.415424 | 3_1:-73919601 | None:intergenic |
| GGCGGAAAATGTGGCTCTTA+CGG | 0.415806 | 3_1:+73916621 | Msa0374440:CDS |
| CCTCAATTTCCTTTCACTCA+TGG | 0.417964 | 3_1:+73915108 | Msa0374440:exon |
| CAACTACAGGGGCTAACAAT+AGG | 0.418268 | 3_1:+73919413 | Msa0374440:CDS |
| CTGTTAACTACTTTGTTACA+AGG | 0.425322 | 3_1:+73915671 | Msa0374440:CDS |
| ACACCAGAGGTTTGGTTTCG+CGG | 0.432398 | 3_1:-73914994 | None:intergenic |
| GAAGCTGCTGTCCTGTATCC+AGG | 0.445399 | 3_1:+73918509 | Msa0374440:CDS |
| ATCTGGGAAGTTTCTTTACA+AGG | 0.447611 | 3_1:+73918164 | Msa0374440:CDS |
| AGCAGAACAAAAGATAAATT+CGG | 0.448603 | 3_1:-73920030 | None:intergenic |
| CAATTGAACCAGGTATTTCA+GGG | 0.451234 | 3_1:-73919918 | None:intergenic |
| TGCCAGCAGTCTCACATAAG+AGG | 0.453131 | 3_1:+73919554 | Msa0374440:CDS |
| CAAGTAGAAATACCTACATC+CGG | 0.465192 | 3_1:+73916975 | Msa0374440:CDS |
| TCCATGTGGTATAGGTTAAG+AGG | 0.465451 | 3_1:+73919388 | Msa0374440:intron |
| TTGGCGCAATGCATGCTTGA+AGG | 0.473896 | 3_1:+73916455 | Msa0374440:CDS |
| AGGTTAAGAGGAACAACTAC+AGG | 0.479419 | 3_1:+73919400 | Msa0374440:intron |
| GGTCCCTTCTGAGTTGGAAT+CGG | 0.480778 | 3_1:+73915633 | Msa0374440:CDS |
| TTTCTACTTGCACTTCCAAA+AGG | 0.482993 | 3_1:-73915850 | None:intergenic |
| GCACTTCCAAAAGGCGCGAC+AGG | 0.483438 | 3_1:-73915841 | None:intergenic |
| GACATTCTTGGAGTCGTTGA+AGG | 0.484136 | 3_1:+73919499 | Msa0374440:CDS |
| AAAACAGTAGGTCGCATGCC+TGG | 0.485790 | 3_1:-73918527 | None:intergenic |
| ATGTGAGACTGCTGGCACAT+CGG | 0.486579 | 3_1:-73919548 | None:intergenic |
| TGCATGCTTGAAGGGTTGGC+AGG | 0.501973 | 3_1:+73916464 | Msa0374440:CDS |
| GGTTGTAATCCGAAAACATT+GGG | 0.515132 | 3_1:-73914940 | None:intergenic |
| TGGAGTCGTTGAAGGATGGC+AGG | 0.521728 | 3_1:+73919507 | Msa0374440:CDS |
| TAGGTCGCATGCCTGGATAC+AGG | 0.528585 | 3_1:-73918520 | None:intergenic |
| GCAATGCATGCTTGAAGGGT+TGG | 0.533926 | 3_1:+73916460 | Msa0374440:CDS |
| TTTAACGGTCCCTTCTGAGT+TGG | 0.534181 | 3_1:+73915627 | Msa0374440:CDS |
| TTGATCTCACTTGTCACTAG+TGG | 0.534671 | 3_1:+73919442 | Msa0374440:CDS |
| TCCACTCTGCAACTCCAACC+CGG | 0.540341 | 3_1:-73916994 | None:intergenic |
| TGGCGCAATGCATGCTTGAA+GGG | 0.540704 | 3_1:+73916456 | Msa0374440:CDS |
| TTCTTGGAGTCGTTGAAGGA+TGG | 0.542284 | 3_1:+73919503 | Msa0374440:CDS |
| CCCCTCTTATGTGAGACTGC+TGG | 0.544075 | 3_1:-73919556 | None:intergenic |
| TGTCTTTGTTCCATTTGAGG+AGG | 0.547210 | 3_1:+73919591 | Msa0374440:CDS |
| ATTCCGCGAAACCAAACCTC+TGG | 0.551803 | 3_1:+73914991 | Msa0374440:five_prime_UTR |
| GCCAGCAGTCTCACATAAGA+GGG | 0.555369 | 3_1:+73919555 | Msa0374440:CDS |
| AAATGTGGCTCTTACGGCCA+AGG | 0.555691 | 3_1:+73916627 | Msa0374440:CDS |
| TCAAATGGAACAAAGACAAA+GGG | 0.558084 | 3_1:-73919586 | None:intergenic |
| AAAACAGACTCTGTCTTTGG+TGG | 0.559204 | 3_1:+73918326 | Msa0374440:CDS |
| AACCTGACGCCATGAGTGAA+AGG | 0.560053 | 3_1:-73915117 | None:intergenic |
| GTTACAAGGAGGCCATGGCT+TGG | 0.560559 | 3_1:+73915685 | Msa0374440:CDS |
| AATCAAAATACGATGGCTCA+TGG | 0.565621 | 3_1:+73916600 | Msa0374440:CDS |
| AATTTGCGTACTTGCATGCG+TGG | 0.567773 | 3_1:+73919975 | Msa0374440:three_prime_UTR |
| TGAAAGGAAATTGAGGTGAA+AGG | 0.571755 | 3_1:-73915101 | None:intergenic |
| ACTTTGTTACAAGGAGGCCA+TGG | 0.571990 | 3_1:+73915680 | Msa0374440:CDS |
| TTGTAAAGAAACTTCCCAGA+TGG | 0.574995 | 3_1:-73918162 | None:intergenic |
| CCATGAGTGAAAGGAAATTG+AGG | 0.575708 | 3_1:-73915108 | None:intergenic |
| CTCAAATGGAACAAAGACAA+AGG | 0.580041 | 3_1:-73919587 | None:intergenic |
| TGCAACTCCAACCCGGATGT+AGG | 0.586345 | 3_1:-73916987 | None:intergenic |
| ATGGCTCATGGCGGAAAATG+TGG | 0.589306 | 3_1:+73916612 | Msa0374440:CDS |
| TACAGGGGCTAACAATAGGA+TGG | 0.594300 | 3_1:+73919417 | Msa0374440:CDS |
| TTACCGTCAAATCGCAACCT+TGG | 0.595041 | 3_1:-73916644 | None:intergenic |
| TAATTAAAGGTACTGTAGTA+CGG | 0.597623 | 3_1:+73914915 | None:intergenic |
| AAACCGATTCCAACTCAGAA+GGG | 0.600214 | 3_1:-73915636 | None:intergenic |
| TCGAATGACTCCATATGACA+TGG | 0.601277 | 3_1:+73916377 | Msa0374440:CDS |
| AATGAAATGATTCAGAATCA+CGG | 0.603878 | 3_1:-73915078 | None:intergenic |
| AGAAATACCTACATCCGGGT+TGG | 0.606217 | 3_1:+73916980 | Msa0374440:CDS |
| GGTTAAGAGGAACAACTACA+GGG | 0.606446 | 3_1:+73919401 | Msa0374440:intron |
| TTCAGGGGCATCATTCAACC+AGG | 0.608305 | 3_1:-73919902 | None:intergenic |
| TTCTCAAAAGATCAAAGATG+TGG | 0.608842 | 3_1:+73918277 | Msa0374440:CDS |
| CTACACATTGACAGATGACA+AGG | 0.608992 | 3_1:+73918352 | Msa0374440:CDS |
| TGAGGCAAGTACATCTGAAG+AGG | 0.609172 | 3_1:+73919477 | Msa0374440:CDS |
| AAAACCGATTCCAACTCAGA+AGG | 0.609545 | 3_1:-73915637 | None:intergenic |
| TAGTGGTGTGGACACTAATG+AGG | 0.610301 | 3_1:+73919459 | Msa0374440:CDS |
| ATGCGTATCCTCAAAACAGT+AGG | 0.614318 | 3_1:-73918539 | None:intergenic |
| ATGCATTGCGCCAAAATACA+GGG | 0.615006 | 3_1:-73916446 | None:intergenic |
| GAGGTATTTACAATTGAACC+AGG | 0.615601 | 3_1:-73919928 | None:intergenic |
| CTCACTTGTCACTAGTGGTG+TGG | 0.615722 | 3_1:+73919447 | Msa0374440:CDS |
| CGGTTGTAATCCGAAAACAT+TGG | 0.624551 | 3_1:-73914941 | None:intergenic |
| TTTGGTTAAAGATCTTTATG+GGG | 0.625965 | 3_1:+73915807 | Msa0374440:intron |
| AATGATGCCCCTGAAATACC+TGG | 0.630188 | 3_1:+73919910 | Msa0374440:exon |
| AAGTAGAAATACCTACATCC+GGG | 0.640220 | 3_1:+73916976 | Msa0374440:CDS |
| AATTGAACCAGGTATTTCAG+GGG | 0.642992 | 3_1:-73919917 | None:intergenic |
| CGAATGACTCCATATGACAT+GGG | 0.647091 | 3_1:+73916378 | Msa0374440:CDS |
| ATACTTCAATCAAAATACGA+TGG | 0.652918 | 3_1:+73916593 | Msa0374440:CDS |
| GCGTTGTACATACCAAGCCA+TGG | 0.657436 | 3_1:-73915697 | None:intergenic |
| TTAACTACTTTGTTACAAGG+AGG | 0.664306 | 3_1:+73915674 | Msa0374440:CDS |
| AAAAGAGAAGAATCAACATG+AGG | 0.664765 | 3_1:-73915874 | None:intergenic |
| TCTGACATGCACATGCCACA+CGG | 0.673940 | 3_1:-73914961 | None:intergenic |
| TCCGGGTTGGAGTTGCAGAG+TGG | 0.680422 | 3_1:+73916993 | Msa0374440:CDS |
| AATCACTAATCCAGTTCACG+TGG | 0.691915 | 3_1:+73917018 | Msa0374440:CDS |
| GTATCAACGTTAGACACCAG+AGG | 0.695810 | 3_1:-73915007 | None:intergenic |
| CCAGCAGTCTCACATAAGAG+GGG | 0.706035 | 3_1:+73919556 | Msa0374440:CDS |
| CAAAATACGATGGCTCATGG+CGG | 0.731935 | 3_1:+73916603 | Msa0374440:CDS |
| GTTAAGAGGAACAACTACAG+GGG | 0.746465 | 3_1:+73919402 | Msa0374440:CDS |
| GTGAGACTGCTGGCACATCG+GGG | 0.755204 | 3_1:-73919546 | None:intergenic |
| CTTGTGTGTGTCGAAAATGG+CGG | 0.757415 | 3_1:+73916409 | Msa0374440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAAATCAGA+TGG | + | chr3_1:73915551-73915570 | Msa0374440:intron | 10.0% |
| !!! | ATTCAAATCTTTAAAATCTT+TGG | + | chr3_1:73915233-73915252 | Msa0374440:intron | 15.0% |
| !!! | AATTTTCAACAATTTTAACA+TGG | + | chr3_1:73915276-73915295 | Msa0374440:intron | 15.0% |
| !!! | ATTTTCAACAATTTTAACAT+GGG | + | chr3_1:73915277-73915296 | Msa0374440:intron | 15.0% |
| !!! | TAAATTAATAATTTTGAGAC+CGG | + | chr3_1:73915316-73915335 | Msa0374440:intron | 15.0% |
| !! | TATTATTAATTAAGATGACA+CGG | - | chr3_1:73915535-73915554 | None:intergenic | 15.0% |
| !! | AACACAATAATAAATAAACA+TGG | - | chr3_1:73915728-73915747 | None:intergenic | 15.0% |
| !!! | TAAAAATAATATTCTGAAAG+TGG | + | chr3_1:73916840-73916859 | Msa0374440:intron | 15.0% |
| !! | GATATTAAATTGATAAATAG+TGG | - | chr3_1:73917164-73917183 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAAAA+AGG | + | chr3_1:73917269-73917288 | Msa0374440:intron | 15.0% |
| !!! | ATTTTAAAGCCTTTTTTTTT+AGG | - | chr3_1:73917281-73917300 | None:intergenic | 15.0% |
| !!! | TTCTTTCTAGAAAAAAATAT+TGG | + | chr3_1:73918424-73918443 | Msa0374440:intron | 15.0% |
| !!! | TCTTTCTAGAAAAAAATATT+GGG | + | chr3_1:73918425-73918444 | Msa0374440:intron | 15.0% |
| !! | GCATTATTTAAATCTATATA+CGG | + | chr3_1:73918447-73918466 | Msa0374440:intron | 15.0% |
| !! | AATTTACATGTGATATTATT+TGG | - | chr3_1:73918904-73918923 | None:intergenic | 15.0% |
| !!! | AATCATATATCCTTTATTTT+TGG | + | chr3_1:73920212-73920231 | Msa0374440:three_prime_UTR | 15.0% |
| !!! | TTTTCAAATTCCAAAAATAA+AGG | - | chr3_1:73920225-73920244 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAACAATGAAGA+AGG | - | chr3_1:73915182-73915201 | None:intergenic | 20.0% |
| !! | GCATATTACATAAATGAAAT+TGG | + | chr3_1:73915416-73915435 | Msa0374440:intron | 20.0% |
| !!! | CTTATTGTTTTTATGTGTTT+TGG | + | chr3_1:73915789-73915808 | Msa0374440:intron | 20.0% |
| !!! | TTTTGGTTAAAGATCTTTAT+GGG | + | chr3_1:73915806-73915825 | Msa0374440:intron | 20.0% |
| !!! | ATTTATTGAATACATTTTGC+AGG | + | chr3_1:73916347-73916366 | Msa0374440:intron | 20.0% |
| !! | AATAAAAAACTTAACCATCA+CGG | - | chr3_1:73916727-73916746 | None:intergenic | 20.0% |
| !! | TGGAAATTTATCGTATTTAA+AGG | + | chr3_1:73916768-73916787 | Msa0374440:intron | 20.0% |
| !! | AGACTAACAGAATTTAAAAA+AGG | - | chr3_1:73917089-73917108 | None:intergenic | 20.0% |
| !! | AATTGTAGTATTTGAATAGA+GGG | + | chr3_1:73917616-73917635 | Msa0374440:intron | 20.0% |
| !! | AACAATTATAATGGTTAACA+AGG | - | chr3_1:73917647-73917666 | None:intergenic | 20.0% |
| !! | TTAACCATTATAATTGTTGA+GGG | + | chr3_1:73917649-73917668 | Msa0374440:intron | 20.0% |
| !! | TTATTCATATGCTTAAAGAT+TGG | - | chr3_1:73918015-73918034 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGGTTATAATT+TGG | + | chr3_1:73918175-73918194 | Msa0374440:intron | 20.0% |
| !! | TCATTATTTGTATATCTACT+AGG | + | chr3_1:73918398-73918417 | Msa0374440:intron | 20.0% |
| !! | AGAATTATGTATTATTAGTG+AGG | + | chr3_1:73918735-73918754 | Msa0374440:intron | 20.0% |
| !! | TCACTTAATATAAGTTAGAA+TGG | + | chr3_1:73918984-73919003 | Msa0374440:intron | 20.0% |
| !!! | ATTTTTTTAGCTTACAGAAA+AGG | - | chr3_1:73919262-73919281 | None:intergenic | 20.0% |
| !! | AACAAATTGAGACAATATTT+AGG | - | chr3_1:73919676-73919695 | None:intergenic | 20.0% |
| !!! | CTATAGTATTTTTCTATTTG+AGG | + | chr3_1:73919725-73919744 | Msa0374440:intron | 20.0% |
| !! | TATAAATATCGAAAGTTATG+AGG | - | chr3_1:73919950-73919969 | None:intergenic | 20.0% |
| ! | AATGAAATGATTCAGAATCA+CGG | - | chr3_1:73915081-73915100 | None:intergenic | 25.0% |
| !!! | AACATGGGTTTTAAATTTGT+TGG | + | chr3_1:73915292-73915311 | Msa0374440:intron | 25.0% |
| !!! | ACATGGGTTTTAAATTTGTT+GGG | + | chr3_1:73915293-73915312 | Msa0374440:intron | 25.0% |
| !! | GTTTGTAGATTTTGCTTTAA+CGG | + | chr3_1:73915612-73915631 | Msa0374440:intron | 25.0% |
| !!! | GTTTTGGTTAAAGATCTTTA+TGG | + | chr3_1:73915805-73915824 | Msa0374440:intron | 25.0% |
| ! | TTTGGTTAAAGATCTTTATG+GGG | + | chr3_1:73915807-73915826 | Msa0374440:intron | 25.0% |
| ! | ATGTATGTAACTACACTATT+TGG | + | chr3_1:73915948-73915967 | Msa0374440:intron | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | + | chr3_1:73916136-73916155 | Msa0374440:intron | 25.0% |
| ! | CTGTTCTTAAAATAAGAATC+AGG | + | chr3_1:73916269-73916288 | Msa0374440:intron | 25.0% |
| ! | ATAAGAATCAGGAAAGTTTA+TGG | + | chr3_1:73916280-73916299 | Msa0374440:intron | 25.0% |
| ! | CAAGTCTAATTTCTGATTAT+GGG | + | chr3_1:73916529-73916548 | Msa0374440:intron | 25.0% |
| ! | AAGTCTAATTTCTGATTATG+GGG | + | chr3_1:73916530-73916549 | Msa0374440:intron | 25.0% |
| ! | ATACTTCAATCAAAATACGA+TGG | + | chr3_1:73916593-73916612 | Msa0374440:CDS | 25.0% |
| ! | ATAAAAAACTTAACCATCAC+GGG | - | chr3_1:73916726-73916745 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAGAACAGAAA+AGG | - | chr3_1:73916909-73916928 | None:intergenic | 25.0% |
| !!! | TATGCCAATTAGTCTTATTA+TGG | + | chr3_1:73916930-73916949 | Msa0374440:intron | 25.0% |
| ! | GAAAACCTCATGAATTAAAA+AGG | + | chr3_1:73917351-73917370 | Msa0374440:intron | 25.0% |
| ! | TCATGCTGAAAATGAATTTA+AGG | + | chr3_1:73917390-73917409 | Msa0374440:intron | 25.0% |
| ! | GAATTGTAGTATTTGAATAG+AGG | + | chr3_1:73917615-73917634 | Msa0374440:intron | 25.0% |
| ! | GTTAACCATTATAATTGTTG+AGG | + | chr3_1:73917648-73917667 | Msa0374440:intron | 25.0% |
| ! | TAACCATTATAATTGTTGAG+GGG | + | chr3_1:73917650-73917669 | Msa0374440:intron | 25.0% |
| ! | TGTAAATTTATGTTTACCGA+TGG | - | chr3_1:73917890-73917909 | None:intergenic | 25.0% |
| ! | TCGGTAAACATAAATTTACA+AGG | + | chr3_1:73917890-73917909 | Msa0374440:intron | 25.0% |
| !! | TGTTAACTTAACCTTTTAAC+AGG | - | chr3_1:73918598-73918617 | None:intergenic | 25.0% |
| ! | AAACTAATATTTAGCACAAG+TGG | + | chr3_1:73919286-73919305 | Msa0374440:intron | 25.0% |
| ! | ATATATAAGCATAGTGCAAA+AGG | - | chr3_1:73919365-73919384 | None:intergenic | 25.0% |
| ! | ACAAAAAGGCAAAAATGTAA+GGG | - | chr3_1:73919827-73919846 | None:intergenic | 25.0% |
| ! | TACAAAAAGGCAAAAATGTA+AGG | - | chr3_1:73919828-73919847 | None:intergenic | 25.0% |
| !! | ACATTTTTGCCTTTTTGTAT+AGG | + | chr3_1:73919829-73919848 | Msa0374440:intron | 25.0% |
| !! | ATAATAATCCATTTTCTCCA+CGG | - | chr3_1:73919879-73919898 | None:intergenic | 25.0% |
| !!! | AAAATGGATTATTATGTTCC+TGG | + | chr3_1:73919884-73919903 | Msa0374440:CDS | 25.0% |
| ! | AGCAGAACAAAAGATAAATT+CGG | - | chr3_1:73920033-73920052 | None:intergenic | 25.0% |
| ! | CTCCTATGTAACTATAAAAA+CGG | + | chr3_1:73920058-73920077 | Msa0374440:three_prime_UTR | 25.0% |
| !!! | AACCGTTTTTATAGTTACAT+AGG | - | chr3_1:73920063-73920082 | None:intergenic | 25.0% |
| ! | ATAAAAACGGTTTGTACATA+AGG | + | chr3_1:73920071-73920090 | Msa0374440:three_prime_UTR | 25.0% |
| ! | TAAAAACGGTTTGTACATAA+GGG | + | chr3_1:73920072-73920091 | Msa0374440:three_prime_UTR | 25.0% |
| !! | AGTTAAACACATGATTTGTA+TGG | - | chr3_1:73920176-73920195 | None:intergenic | 25.0% |
| ACAATTAGCGCAATAATAGA+TGG | - | chr3_1:73915212-73915231 | None:intergenic | 30.0% | |
| TTCAGCTGAATATTCATTTG+AGG | + | chr3_1:73915343-73915362 | Msa0374440:intron | 30.0% | |
| ATTGGAAAGATTATGTCCAT+AGG | + | chr3_1:73915434-73915453 | Msa0374440:intron | 30.0% | |
| AGAATTTGAACTATGTCACA+AGG | - | chr3_1:73915486-73915505 | None:intergenic | 30.0% | |
| CTGTTAACTACTTTGTTACA+AGG | + | chr3_1:73915671-73915690 | Msa0374440:CDS | 30.0% | |
| TTAACTACTTTGTTACAAGG+AGG | + | chr3_1:73915674-73915693 | Msa0374440:CDS | 30.0% | |
| AAAAGAGAAGAATCAACATG+AGG | - | chr3_1:73915877-73915896 | None:intergenic | 30.0% | |
| !!! | TGGTCATGACTTTTTTGATA+TGG | + | chr3_1:73915968-73915987 | Msa0374440:intron | 30.0% |
| !!! | ATGACTTTTTTGATATGGTG+TGG | + | chr3_1:73915973-73915992 | Msa0374440:intron | 30.0% |
| !!! | TGACTTTTTTGATATGGTGT+GGG | + | chr3_1:73915974-73915993 | Msa0374440:intron | 30.0% |
| TCATGTACGATATTTGATGT+GGG | + | chr3_1:73916059-73916078 | Msa0374440:intron | 30.0% | |
| ATATTTGATGTGGGTATGTT+TGG | + | chr3_1:73916068-73916087 | Msa0374440:intron | 30.0% | |
| ! | TTAAGTTTCAAGTGTACGAA+GGG | - | chr3_1:73916132-73916151 | None:intergenic | 30.0% |
| ! | TTTAAGTTTCAAGTGTACGA+AGG | - | chr3_1:73916133-73916152 | None:intergenic | 30.0% |
| CACAACTTATTGACAGTATT+TGG | + | chr3_1:73916208-73916227 | Msa0374440:intron | 30.0% | |
| GCAAGTCTAATTTCTGATTA+TGG | + | chr3_1:73916528-73916547 | Msa0374440:intron | 30.0% | |
| TAGTTGAAACAAATGCTGTA+TGG | + | chr3_1:73916748-73916767 | Msa0374440:intron | 30.0% | |
| !!! | TTATTTTTAGTCTTGTGCAG+TGG | - | chr3_1:73916829-73916848 | None:intergenic | 30.0% |
| AGGACCATAATAAGACTAAT+TGG | - | chr3_1:73916937-73916956 | None:intergenic | 30.0% | |
| AAGGATATCTATTTCGTAGT+AGG | - | chr3_1:73917070-73917089 | None:intergenic | 30.0% | |
| TTCATTGTTAGATCTGCATT+CGG | + | chr3_1:73917112-73917131 | Msa0374440:intron | 30.0% | |
| !!! | GATCAGAAACTAGTTTTATG+AGG | + | chr3_1:73917221-73917240 | Msa0374440:intron | 30.0% |
| ! | ATTGTTTTCATGCAAACACT+AGG | + | chr3_1:73917299-73917318 | Msa0374440:intron | 30.0% |
| ! | TTGTTTTCATGCAAACACTA+GGG | + | chr3_1:73917300-73917319 | Msa0374440:intron | 30.0% |
| !! | CAGATCCTTTTTAATTCATG+AGG | - | chr3_1:73917359-73917378 | None:intergenic | 30.0% |
| ! | TTATTTTCCTATACTCTGCA+GGG | - | chr3_1:73917487-73917506 | None:intergenic | 30.0% |
| TTGTATTGTCCTTGATATAG+CGG | + | chr3_1:73917687-73917706 | Msa0374440:intron | 30.0% | |
| GAGGAATTCCATGTAAAAAT+TGG | + | chr3_1:73917753-73917772 | Msa0374440:intron | 30.0% | |
| ! | CTGGAAAACCAATTTTTACA+TGG | - | chr3_1:73917764-73917783 | None:intergenic | 30.0% |
| ! | TTCATCTAAGCATTGCATTT+AGG | + | chr3_1:73917935-73917954 | Msa0374440:intron | 30.0% |
| TACTTCACAAGATTTACTCA+TGG | - | chr3_1:73918056-73918075 | None:intergenic | 30.0% | |
| TTCTCAAAAGATCAAAGATG+TGG | + | chr3_1:73918277-73918296 | Msa0374440:CDS | 30.0% | |
| AAATCTATATACGGATCTTG+AGG | + | chr3_1:73918456-73918475 | Msa0374440:intron | 30.0% | |
| TTTAACAGGATATGCTATCA+AGG | - | chr3_1:73918584-73918603 | None:intergenic | 30.0% | |
| TGATAGCATATCCTGTTAAA+AGG | + | chr3_1:73918584-73918603 | Msa0374440:intron | 30.0% | |
| ! | GGAATACAAAGTTTCTTTTC+TGG | - | chr3_1:73918628-73918647 | None:intergenic | 30.0% |
| ! | AGGAACAATTACCATTTTGT+TGG | + | chr3_1:73918777-73918796 | Msa0374440:intron | 30.0% |
| ! | ACAATTACCATTTTGTTGGT+TGG | + | chr3_1:73918781-73918800 | Msa0374440:intron | 30.0% |
| !!! | ATTTTGTAGACTTGTTAAGG+TGG | - | chr3_1:73918965-73918984 | None:intergenic | 30.0% |
| !!! | GTGATTTTGTAGACTTGTTA+AGG | - | chr3_1:73918968-73918987 | None:intergenic | 30.0% |
| AAGTGATGTAAGATAGAGAA+GGG | - | chr3_1:73919043-73919062 | None:intergenic | 30.0% | |
| TAAGTGATGTAAGATAGAGA+AGG | - | chr3_1:73919044-73919063 | None:intergenic | 30.0% | |
| !!! | ACGCAATCAAAACTTTTTCA+CGG | - | chr3_1:73919084-73919103 | None:intergenic | 30.0% |
| AACAGTTGTGTACTTAAGAA+TGG | + | chr3_1:73919111-73919130 | Msa0374440:intron | 30.0% | |
| ATGTAGGTAGAATTTGAACA+AGG | + | chr3_1:73919175-73919194 | Msa0374440:intron | 30.0% | |
| ! | AAGGAAAGTATGCAGTTTAT+TGG | + | chr3_1:73919194-73919213 | Msa0374440:intron | 30.0% |
| TGATTCTCTGGTCTAATATT+TGG | - | chr3_1:73919314-73919333 | None:intergenic | 30.0% | |
| CAAACGTGTCAAAAAAGAAT+TGG | + | chr3_1:73919334-73919353 | Msa0374440:intron | 30.0% | |
| TGCTTATATATATCTCCATG+TGG | + | chr3_1:73919374-73919393 | Msa0374440:intron | 30.0% | |
| TATATATCTCCATGTGGTAT+AGG | + | chr3_1:73919380-73919399 | Msa0374440:intron | 30.0% | |
| TCAAATGGAACAAAGACAAA+GGG | - | chr3_1:73919589-73919608 | None:intergenic | 30.0% | |
| CAAAAAGGCAAAAATGTAAG+GGG | - | chr3_1:73919826-73919845 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTTTTGTATAGG+TGG | + | chr3_1:73919832-73919851 | Msa0374440:intron | 30.0% |
| ! | TAATAATCCATTTTCTCCAC+GGG | - | chr3_1:73919878-73919897 | None:intergenic | 30.0% |
| GGTTGTAATCCGAAAACATT+GGG | - | chr3_1:73914943-73914962 | None:intergenic | 35.0% | |
| TGAAAGGAAATTGAGGTGAA+AGG | - | chr3_1:73915104-73915123 | None:intergenic | 35.0% | |
| CTAAAACAATGAAGAAGGTG+CGG | - | chr3_1:73915177-73915196 | None:intergenic | 35.0% | |
| AGTTCAAATTCTCTCCTAGA+CGG | + | chr3_1:73915494-73915513 | Msa0374440:intron | 35.0% | |
| ! | TCATCATTTTACAACCGTCT+AGG | - | chr3_1:73915511-73915530 | None:intergenic | 35.0% |
| TTTCTACTTGCACTTCCAAA+AGG | - | chr3_1:73915853-73915872 | None:intergenic | 35.0% | |
| CTCATGTACGATATTTGATG+TGG | + | chr3_1:73916058-73916077 | Msa0374440:intron | 35.0% | |
| ! | CAATTCGTAACCCTGTATTT+TGG | + | chr3_1:73916436-73916455 | Msa0374440:CDS | 35.0% |
| AATCAAAATACGATGGCTCA+TGG | + | chr3_1:73916600-73916619 | Msa0374440:CDS | 35.0% | |
| AATATGAGGGGCAAGAAATA+AGG | - | chr3_1:73916694-73916713 | None:intergenic | 35.0% | |
| ! | TAAAGGTGTGATTCTCTTCT+AGG | + | chr3_1:73916785-73916804 | Msa0374440:intron | 35.0% |
| TTATTATGGTCCTGCATCAT+AGG | + | chr3_1:73916944-73916963 | Msa0374440:intron | 35.0% | |
| CAAGTAGAAATACCTACATC+CGG | + | chr3_1:73916975-73916994 | Msa0374440:CDS | 35.0% | |
| AAGTAGAAATACCTACATCC+GGG | + | chr3_1:73916976-73916995 | Msa0374440:CDS | 35.0% | |
| ! | TCCATGAAACTCTAGAGAAA+TGG | + | chr3_1:73917433-73917452 | Msa0374440:intron | 35.0% |
| !! | TCCATTTCTCTAGAGTTTCA+TGG | - | chr3_1:73917437-73917456 | None:intergenic | 35.0% |
| !! | CTTATTTTCCTATACTCTGC+AGG | - | chr3_1:73917488-73917507 | None:intergenic | 35.0% |
| ! | TTGGGCATGTCAAAGAATTT+TGG | + | chr3_1:73917550-73917569 | Msa0374440:intron | 35.0% |
| TGTGACTGACTAATTAAGCA+GGG | - | chr3_1:73917593-73917612 | None:intergenic | 35.0% | |
| !! | AAAAGCATTCCGCTATATCA+AGG | - | chr3_1:73917699-73917718 | None:intergenic | 35.0% |
| ! | GTGTTTTTCATCCTCATAGA+TGG | + | chr3_1:73917731-73917750 | Msa0374440:intron | 35.0% |
| ! | TTTTTCATCCTCATAGATGG+AGG | + | chr3_1:73917734-73917753 | Msa0374440:intron | 35.0% |
| TAAAACACACCTTCTGATGA+AGG | - | chr3_1:73917793-73917812 | None:intergenic | 35.0% | |
| CATATGGTATATCCACTATC+CGG | - | chr3_1:73917849-73917868 | None:intergenic | 35.0% | |
| TGGATATACCATATGCTATC+TGG | + | chr3_1:73917854-73917873 | Msa0374440:intron | 35.0% | |
| ! | ATCTAAGCATTGCATTTAGG+AGG | + | chr3_1:73917938-73917957 | Msa0374440:intron | 35.0% |
| ATAACAGACCTGCAGAATAT+GGG | - | chr3_1:73918121-73918140 | None:intergenic | 35.0% | |
| AATAACAGACCTGCAGAATA+TGG | - | chr3_1:73918122-73918141 | None:intergenic | 35.0% | |
| ATGGAAAAAATCTCAGGTAC+CGG | - | chr3_1:73918146-73918165 | None:intergenic | 35.0% | |
| !!! | TACCTGAGATTTTTTCCATC+TGG | + | chr3_1:73918147-73918166 | Msa0374440:CDS | 35.0% |
| !!! | ACCTGAGATTTTTTCCATCT+GGG | + | chr3_1:73918148-73918167 | Msa0374440:CDS | 35.0% |
| TTGTAAAGAAACTTCCCAGA+TGG | - | chr3_1:73918165-73918184 | None:intergenic | 35.0% | |
| ATCTGGGAAGTTTCTTTACA+AGG | + | chr3_1:73918164-73918183 | Msa0374440:CDS | 35.0% | |
| GTTCTCATACAATCACATAC+AGG | - | chr3_1:73918236-73918255 | None:intergenic | 35.0% | |
| GCTATTGATATCATCATTGC+AGG | + | chr3_1:73918484-73918503 | Msa0374440:intron | 35.0% | |
| GAAACTTTGTATTCCCTATC+TGG | + | chr3_1:73918633-73918652 | Msa0374440:intron | 35.0% | |
| TTTGTATTCCCTATCTGGTT+AGG | + | chr3_1:73918638-73918657 | Msa0374440:intron | 35.0% | |
| AAATCCAACCTAACCAGATA+GGG | - | chr3_1:73918649-73918668 | None:intergenic | 35.0% | |
| TTGATCTATTCTCTTAGCAG+AGG | - | chr3_1:73918687-73918706 | None:intergenic | 35.0% | |
| GCTTCTTCTAATGCTTTAAC+AGG | + | chr3_1:73918757-73918776 | Msa0374440:intron | 35.0% | |
| ATGAATGCCAACCAACAAAA+TGG | - | chr3_1:73918791-73918810 | None:intergenic | 35.0% | |
| GTTGGTTGGCATTCATTAAT+TGG | + | chr3_1:73918795-73918814 | Msa0374440:intron | 35.0% | |
| TTCATTAATCCTCATCTACC+AGG | + | chr3_1:73918922-73918941 | Msa0374440:intron | 35.0% | |
| TCATTAATCCTCATCTACCA+GGG | + | chr3_1:73918923-73918942 | Msa0374440:intron | 35.0% | |
| ! | GGTCGATCACAATTACATTT+TGG | - | chr3_1:73919022-73919041 | None:intergenic | 35.0% |
| CTATCTTACATCACTTACAC+TGG | + | chr3_1:73919047-73919066 | Msa0374440:intron | 35.0% | |
| ! | GTTTATTAGCCTCTGAATGT+AGG | + | chr3_1:73919159-73919178 | Msa0374440:intron | 35.0% |
| CAAATTCTACCTACATTCAG+AGG | - | chr3_1:73919171-73919190 | None:intergenic | 35.0% | |
| CTCAAATGGAACAAAGACAA+AGG | - | chr3_1:73919590-73919609 | None:intergenic | 35.0% | |
| CTTTGTCTTTGTTCCATTTG+AGG | + | chr3_1:73919588-73919607 | Msa0374440:CDS | 35.0% | |
| TAAAACTGTACCTCCTCAAA+TGG | - | chr3_1:73919604-73919623 | None:intergenic | 35.0% | |
| ATGTCTCCACCTATACAAAA+AGG | - | chr3_1:73919841-73919860 | None:intergenic | 35.0% | |
| AATTGAACCAGGTATTTCAG+GGG | - | chr3_1:73919920-73919939 | None:intergenic | 35.0% | |
| CAATTGAACCAGGTATTTCA+GGG | - | chr3_1:73919921-73919940 | None:intergenic | 35.0% | |
| ACAATTGAACCAGGTATTTC+AGG | - | chr3_1:73919922-73919941 | None:intergenic | 35.0% | |
| ! | GAGGTATTTACAATTGAACC+AGG | - | chr3_1:73919931-73919950 | None:intergenic | 35.0% |
| ! | AGTACGGTACCCAATGTTTT+CGG | + | chr3_1:73914931-73914950 | Msa0374440:five_prime_UTR | 40.0% |
| CGGTTGTAATCCGAAAACAT+TGG | - | chr3_1:73914944-73914963 | None:intergenic | 40.0% | |
| CCATGAGTGAAAGGAAATTG+AGG | - | chr3_1:73915111-73915130 | None:intergenic | 40.0% | |
| CCTCAATTTCCTTTCACTCA+TGG | + | chr3_1:73915108-73915127 | Msa0374440:exon | 40.0% | |
| ! | GAATATTCAGCTGAAAGCAC+CGG | - | chr3_1:73915338-73915357 | None:intergenic | 40.0% |
| AACAATGAGCTGAAAGCCTA+TGG | - | chr3_1:73915453-73915472 | None:intergenic | 40.0% | |
| ! | AAACCGATTCCAACTCAGAA+GGG | - | chr3_1:73915639-73915658 | None:intergenic | 40.0% |
| ! | AAAACCGATTCCAACTCAGA+AGG | - | chr3_1:73915640-73915659 | None:intergenic | 40.0% |
| ! | GTACATGAGCTATCTGAAGT+AGG | - | chr3_1:73916047-73916066 | None:intergenic | 40.0% |
| CTCAAATCCGTTAGAACCAA+CGG | - | chr3_1:73916241-73916260 | None:intergenic | 40.0% | |
| TCGAATGACTCCATATGACA+TGG | + | chr3_1:73916377-73916396 | Msa0374440:CDS | 40.0% | |
| CGAATGACTCCATATGACAT+GGG | + | chr3_1:73916378-73916397 | Msa0374440:CDS | 40.0% | |
| ATGCATTGCGCCAAAATACA+GGG | - | chr3_1:73916449-73916468 | None:intergenic | 40.0% | |
| !!! | GGCTTTTTTATGAAGCTCTC+TGG | + | chr3_1:73916551-73916570 | Msa0374440:intron | 40.0% |
| !! | TTTTATGAAGCTCTCTGGAG+CGG | + | chr3_1:73916556-73916575 | Msa0374440:intron | 40.0% |
| TTCTTGCCCCTCATATTGAT+TGG | + | chr3_1:73916697-73916716 | Msa0374440:intron | 40.0% | |
| TGCATAAAGACCTATGATGC+AGG | - | chr3_1:73916957-73916976 | None:intergenic | 40.0% | |
| AATCACTAATCCAGTTCACG+TGG | + | chr3_1:73917018-73917037 | Msa0374440:CDS | 40.0% | |
| ! | GGGTGTTACACACTTTATAG+AGG | - | chr3_1:73917522-73917541 | None:intergenic | 40.0% |
| !! | TGTAACACCCAAGAGTGTTT+GGG | + | chr3_1:73917532-73917551 | Msa0374440:intron | 40.0% |
| CTGTGACTGACTAATTAAGC+AGG | - | chr3_1:73917594-73917613 | None:intergenic | 40.0% | |
| GTGCCCCTCAACAATTATAA+TGG | - | chr3_1:73917656-73917675 | None:intergenic | 40.0% | |
| ! | TTATAATTGTTGAGGGGCAC+TGG | + | chr3_1:73917656-73917675 | Msa0374440:intron | 40.0% |
| ATGGAATTCCTCCATCTATG+AGG | - | chr3_1:73917745-73917764 | None:intergenic | 40.0% | |
| ACTCATCTATTCCTTGTGTG+TGG | + | chr3_1:73917812-73917831 | Msa0374440:intron | 40.0% | |
| AAGAGGAACCAGATAGCATA+TGG | - | chr3_1:73917865-73917884 | None:intergenic | 40.0% | |
| TATGTTTACCGATGGCAAAG+AGG | - | chr3_1:73917882-73917901 | None:intergenic | 40.0% | |
| TAACAGACCTGCAGAATATG+GGG | - | chr3_1:73918120-73918139 | None:intergenic | 40.0% | |
| TTCTGCAGGTCTGTTATTAC+CGG | + | chr3_1:73918124-73918143 | Msa0374440:intron | 40.0% | |
| TCCCAGATGGAAAAAATCTC+AGG | - | chr3_1:73918152-73918171 | None:intergenic | 40.0% | |
| ! | ACCAAAGACAGAGTCTGTTT+TGG | - | chr3_1:73918327-73918346 | None:intergenic | 40.0% |
| AAAACAGACTCTGTCTTTGG+TGG | + | chr3_1:73918326-73918345 | Msa0374440:CDS | 40.0% | |
| CTACACATTGACAGATGACA+AGG | + | chr3_1:73918352-73918371 | Msa0374440:CDS | 40.0% | |
| ATGCGTATCCTCAAAACAGT+AGG | - | chr3_1:73918542-73918561 | None:intergenic | 40.0% | |
| TATTCCCTATCTGGTTAGGT+TGG | + | chr3_1:73918642-73918661 | Msa0374440:intron | 40.0% | |
| CAAATCCAACCTAACCAGAT+AGG | - | chr3_1:73918650-73918669 | None:intergenic | 40.0% | |
| GTTGTGATATAACATAGCCC+TGG | - | chr3_1:73918943-73918962 | None:intergenic | 40.0% | |
| TTGACACGTTTGTGATTCTC+TGG | - | chr3_1:73919326-73919345 | None:intergenic | 40.0% | |
| TCCATGTGGTATAGGTTAAG+AGG | + | chr3_1:73919388-73919407 | Msa0374440:intron | 40.0% | |
| TCCTCTTAACCTATACCACA+TGG | - | chr3_1:73919392-73919411 | None:intergenic | 40.0% | |
| AGGTTAAGAGGAACAACTAC+AGG | + | chr3_1:73919400-73919419 | Msa0374440:intron | 40.0% | |
| GGTTAAGAGGAACAACTACA+GGG | + | chr3_1:73919401-73919420 | Msa0374440:intron | 40.0% | |
| GTTAAGAGGAACAACTACAG+GGG | + | chr3_1:73919402-73919421 | Msa0374440:CDS | 40.0% | |
| TTGATCTCACTTGTCACTAG+TGG | + | chr3_1:73919442-73919461 | Msa0374440:CDS | 40.0% | |
| ACATCTGAAGAGGACATTCT+TGG | + | chr3_1:73919487-73919506 | Msa0374440:CDS | 40.0% | |
| TGTCTTTGTTCCATTTGAGG+AGG | + | chr3_1:73919591-73919610 | Msa0374440:CDS | 40.0% | |
| ! | ATCTCTTTTGAATTTGCCCG+TGG | + | chr3_1:73919859-73919878 | Msa0374440:CDS | 40.0% |
| ! | GTTTTCGGATTACAACCGTG+TGG | + | chr3_1:73914946-73914965 | Msa0374440:five_prime_UTR | 45.0% |
| AACGTTAGACACCAGAGGTT+TGG | - | chr3_1:73915005-73915024 | None:intergenic | 45.0% | |
| GTATCAACGTTAGACACCAG+AGG | - | chr3_1:73915010-73915029 | None:intergenic | 45.0% | |
| GACACACTTCGACATCAAAC+AGG | - | chr3_1:73915581-73915600 | None:intergenic | 45.0% | |
| TTTAACGGTCCCTTCTGAGT+TGG | + | chr3_1:73915627-73915646 | Msa0374440:CDS | 45.0% | |
| !! | CTGAGTTGGAATCGGTTTTG+AGG | + | chr3_1:73915641-73915660 | Msa0374440:CDS | 45.0% |
| ACTTTGTTACAAGGAGGCCA+TGG | + | chr3_1:73915680-73915699 | Msa0374440:CDS | 45.0% | |
| !! | GTGGGACTAGTTACAATGTG+CGG | + | chr3_1:73915992-73916011 | Msa0374440:intron | 45.0% |
| !! | TGGGACTAGTTACAATGTGC+GGG | + | chr3_1:73915993-73916012 | Msa0374440:intron | 45.0% |
| !! | AGTATTTGGTGCATCACCGT+TGG | + | chr3_1:73916222-73916241 | Msa0374440:intron | 45.0% |
| !! | TGCATCACCGTTGGTTCTAA+CGG | + | chr3_1:73916231-73916250 | Msa0374440:intron | 45.0% |
| ! | GAGGCTTTTCCCATGTCATA+TGG | - | chr3_1:73916390-73916409 | None:intergenic | 45.0% |
| ! | CCATTTTCGACACACACAAG+AGG | - | chr3_1:73916409-73916428 | None:intergenic | 45.0% |
| CCTCTTGTGTGTGTCGAAAA+TGG | + | chr3_1:73916406-73916425 | Msa0374440:CDS | 45.0% | |
| CTTGTGTGTGTCGAAAATGG+CGG | + | chr3_1:73916409-73916428 | Msa0374440:CDS | 45.0% | |
| CATGCATTGCGCCAAAATAC+AGG | - | chr3_1:73916450-73916469 | None:intergenic | 45.0% | |
| CAAAATACGATGGCTCATGG+CGG | + | chr3_1:73916603-73916622 | Msa0374440:CDS | 45.0% | |
| TTACCGTCAAATCGCAACCT+TGG | - | chr3_1:73916647-73916666 | None:intergenic | 45.0% | |
| GGGTCACCAATCAATATGAG+GGG | - | chr3_1:73916706-73916725 | None:intergenic | 45.0% | |
| CGGGTCACCAATCAATATGA+GGG | - | chr3_1:73916707-73916726 | None:intergenic | 45.0% | |
| ACGGGTCACCAATCAATATG+AGG | - | chr3_1:73916708-73916727 | None:intergenic | 45.0% | |
| ! | TATTGATTGGTGACCCGTGA+TGG | + | chr3_1:73916710-73916729 | Msa0374440:intron | 45.0% |
| !! | TTAGTCTTGTGCAGTGGAGA+GGG | - | chr3_1:73916823-73916842 | None:intergenic | 45.0% |
| !! | TTTAGTCTTGTGCAGTGGAG+AGG | - | chr3_1:73916824-73916843 | None:intergenic | 45.0% |
| AGAAATACCTACATCCGGGT+TGG | + | chr3_1:73916980-73916999 | Msa0374440:CDS | 45.0% | |
| TGAATGCATACCACGTGAAC+TGG | - | chr3_1:73917031-73917050 | None:intergenic | 45.0% | |
| !! | GTGTAACACCCAAGAGTGTT+TGG | + | chr3_1:73917531-73917550 | Msa0374440:intron | 45.0% |
| TGACATGCCCAAACACTCTT+GGG | - | chr3_1:73917542-73917561 | None:intergenic | 45.0% | |
| TTGACATGCCCAAACACTCT+TGG | - | chr3_1:73917543-73917562 | None:intergenic | 45.0% | |
| CTATTCCTTGTGTGTGGTGT+TGG | + | chr3_1:73917818-73917837 | Msa0374440:intron | 45.0% | |
| ATCAACCAACACCACACACA+AGG | - | chr3_1:73917826-73917845 | None:intergenic | 45.0% | |
| ! | ATCTGGTTCCTCTTTGCCAT+CGG | + | chr3_1:73917871-73917890 | Msa0374440:intron | 45.0% |
| AATTTCCCCCCATATTCTGC+AGG | + | chr3_1:73918110-73918129 | Msa0374440:intron | 45.0% | |
| AACAGACCTGCAGAATATGG+GGG | - | chr3_1:73918119-73918138 | None:intergenic | 45.0% | |
| GCCAAAACAGACTCTGTCTT+TGG | + | chr3_1:73918323-73918342 | Msa0374440:CDS | 45.0% | |
| !!! | CTGTTTTGAGGATACGCATG+AGG | + | chr3_1:73918543-73918562 | Msa0374440:CDS | 45.0% |
| TGAGGATACGCATGAGGTAA+TGG | + | chr3_1:73918549-73918568 | Msa0374440:intron | 45.0% | |
| TCTCTTAGCAGAGGACATAC+TGG | - | chr3_1:73918678-73918697 | None:intergenic | 45.0% | |
| TAACATAGCCCTGGTAGATG+AGG | - | chr3_1:73918934-73918953 | None:intergenic | 45.0% | |
| CAACTACAGGGGCTAACAAT+AGG | + | chr3_1:73919413-73919432 | Msa0374440:CDS | 45.0% | |
| TACAGGGGCTAACAATAGGA+TGG | + | chr3_1:73919417-73919436 | Msa0374440:CDS | 45.0% | |
| TAGTGGTGTGGACACTAATG+AGG | + | chr3_1:73919459-73919478 | Msa0374440:CDS | 45.0% | |
| TGAGGCAAGTACATCTGAAG+AGG | + | chr3_1:73919477-73919496 | Msa0374440:CDS | 45.0% | |
| GACATTCTTGGAGTCGTTGA+AGG | + | chr3_1:73919499-73919518 | Msa0374440:CDS | 45.0% | |
| TTCTTGGAGTCGTTGAAGGA+TGG | + | chr3_1:73919503-73919522 | Msa0374440:CDS | 45.0% | |
| GAATTTGCCCGTGGAGAAAA+TGG | + | chr3_1:73919868-73919887 | Msa0374440:CDS | 45.0% | |
| AATGATGCCCCTGAAATACC+TGG | + | chr3_1:73919910-73919929 | Msa0374440:exon | 45.0% | |
| AATTTGCGTACTTGCATGCG+TGG | + | chr3_1:73919975-73919994 | Msa0374440:three_prime_UTR | 45.0% | |
| !!! | ATTCATATATAATTTTAAAT+AGG | - | chr3_1:73917974-73917993 | None:intergenic | 5.0% |
| TCTGACATGCACATGCCACA+CGG | - | chr3_1:73914964-73914983 | None:intergenic | 50.0% | |
| ATTCCGCGAAACCAAACCTC+TGG | + | chr3_1:73914991-73915010 | Msa0374440:five_prime_UTR | 50.0% | |
| ! | ACACCAGAGGTTTGGTTTCG+CGG | - | chr3_1:73914997-73915016 | None:intergenic | 50.0% |
| TTCCTTTCACTCATGGCGTC+AGG | + | chr3_1:73915115-73915134 | Msa0374440:exon | 50.0% | |
| AACCTGACGCCATGAGTGAA+AGG | - | chr3_1:73915120-73915139 | None:intergenic | 50.0% | |
| ! | GGTCCCTTCTGAGTTGGAAT+CGG | + | chr3_1:73915633-73915652 | Msa0374440:CDS | 50.0% |
| GCGTTGTACATACCAAGCCA+TGG | - | chr3_1:73915700-73915719 | None:intergenic | 50.0% | |
| ACCAGATGAGCTGCTCTTTG+AGG | + | chr3_1:73915909-73915928 | Msa0374440:CDS | 50.0% | |
| ACCTCAAAGAGCAGCTCATC+TGG | - | chr3_1:73915913-73915932 | None:intergenic | 50.0% | |
| TTGGCGCAATGCATGCTTGA+AGG | + | chr3_1:73916455-73916474 | Msa0374440:CDS | 50.0% | |
| TGGCGCAATGCATGCTTGAA+GGG | + | chr3_1:73916456-73916475 | Msa0374440:CDS | 50.0% | |
| GCAATGCATGCTTGAAGGGT+TGG | + | chr3_1:73916460-73916479 | Msa0374440:CDS | 50.0% | |
| TTGGCAGGTAAGGTCAATGG+AGG | + | chr3_1:73916479-73916498 | Msa0374440:intron | 50.0% | |
| ! | ATGGCTCATGGCGGAAAATG+TGG | + | chr3_1:73916612-73916631 | Msa0374440:CDS | 50.0% |
| GGCGGAAAATGTGGCTCTTA+CGG | + | chr3_1:73916621-73916640 | Msa0374440:CDS | 50.0% | |
| AAATGTGGCTCTTACGGCCA+AGG | + | chr3_1:73916627-73916646 | Msa0374440:CDS | 50.0% | |
| TGCTCTTCCCTGCAGAGTAT+AGG | + | chr3_1:73917477-73917496 | Msa0374440:intron | 50.0% | |
| ! | ACACCTTCTGATGAAGGTGC+TGG | - | chr3_1:73917787-73917806 | None:intergenic | 50.0% |
| !! | GTGTGTGGTGTTGGTTGATC+CGG | + | chr3_1:73917827-73917846 | Msa0374440:intron | 50.0% |
| !! | GTGTTGGTTGATCCGGATAG+TGG | + | chr3_1:73917834-73917853 | Msa0374440:intron | 50.0% |
| ACAGACCTGCAGAATATGGG+GGG | - | chr3_1:73918118-73918137 | None:intergenic | 50.0% | |
| AAAACAGTAGGTCGCATGCC+TGG | - | chr3_1:73918530-73918549 | None:intergenic | 50.0% | |
| ! | GCATGCGACCTACTGTTTTG+AGG | + | chr3_1:73918531-73918550 | Msa0374440:CDS | 50.0% |
| CTCACTTGTCACTAGTGGTG+TGG | + | chr3_1:73919447-73919466 | Msa0374440:CDS | 50.0% | |
| ATGTGAGACTGCTGGCACAT+CGG | - | chr3_1:73919551-73919570 | None:intergenic | 50.0% | |
| TGCCAGCAGTCTCACATAAG+AGG | + | chr3_1:73919554-73919573 | Msa0374440:CDS | 50.0% | |
| GCCAGCAGTCTCACATAAGA+GGG | + | chr3_1:73919555-73919574 | Msa0374440:CDS | 50.0% | |
| CCAGCAGTCTCACATAAGAG+GGG | + | chr3_1:73919556-73919575 | Msa0374440:CDS | 50.0% | |
| !! | TTCAGGGGCATCATTCAACC+AGG | - | chr3_1:73919905-73919924 | None:intergenic | 50.0% |
| TCACTCATGGCGTCAGGTTC+AGG | + | chr3_1:73915121-73915140 | Msa0374440:exon | 55.0% | |
| ! | GAAGAAGGTGCGGATCGAAG+TGG | - | chr3_1:73915167-73915186 | None:intergenic | 55.0% |
| GTTACAAGGAGGCCATGGCT+TGG | + | chr3_1:73915685-73915704 | Msa0374440:CDS | 55.0% | |
| ! | TGCATGCTTGAAGGGTTGGC+AGG | + | chr3_1:73916464-73916483 | Msa0374440:CDS | 55.0% |
| ! | GCTTGAAGGGTTGGCAGGTA+AGG | + | chr3_1:73916469-73916488 | Msa0374440:intron | 55.0% |
| ! | GGGTTGGCAGGTAAGGTCAA+TGG | + | chr3_1:73916476-73916495 | Msa0374440:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | + | chr3_1:73916641-73916660 | Msa0374440:CDS | 55.0% | |
| TGCAACTCCAACCCGGATGT+AGG | - | chr3_1:73916990-73917009 | None:intergenic | 55.0% | |
| TCCACTCTGCAACTCCAACC+CGG | - | chr3_1:73916997-73917016 | None:intergenic | 55.0% | |
| !! | CTTCTGATGAAGGTGCTGGC+TGG | - | chr3_1:73917783-73917802 | None:intergenic | 55.0% |
| CAGCCAGCACCTTCATCAGA+AGG | + | chr3_1:73917781-73917800 | Msa0374440:intron | 55.0% | |
| GAAGCTGCTGTCCTGTATCC+AGG | + | chr3_1:73918509-73918528 | Msa0374440:CDS | 55.0% | |
| TAGGTCGCATGCCTGGATAC+AGG | - | chr3_1:73918523-73918542 | None:intergenic | 55.0% | |
| TGGAGTCGTTGAAGGATGGC+AGG | + | chr3_1:73919507-73919526 | Msa0374440:CDS | 55.0% | |
| TGTGAGACTGCTGGCACATC+GGG | - | chr3_1:73919550-73919569 | None:intergenic | 55.0% | |
| CCCCTCTTATGTGAGACTGC+TGG | - | chr3_1:73919559-73919578 | None:intergenic | 55.0% | |
| ! | GTGAGACCTGTCGCGCCTTT+TGG | + | chr3_1:73915835-73915854 | Msa0374440:CDS | 60.0% |
| ! | GCACTTCCAAAAGGCGCGAC+AGG | - | chr3_1:73915844-73915863 | None:intergenic | 60.0% |
| ! | TCCGGGTTGGAGTTGCAGAG+TGG | + | chr3_1:73916993-73917012 | Msa0374440:CDS | 60.0% |
| GTGAGACTGCTGGCACATCG+GGG | - | chr3_1:73919549-73919568 | None:intergenic | 60.0% | |
| GTGCGGATCGAAGTGGCGAG+AGG | - | chr3_1:73915160-73915179 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73914923 | 73920253 | 73914923 | ID=Msa0374440;Name=Msa0374440 |
| chr3_1 | mRNA | 73914923 | 73920253 | 73914923 | ID=Msa0374440-mRNA-1;Parent=Msa0374440;Name=Msa0374440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=204|1|1|1|1|1|11|343|329 |
| chr3_1 | exon | 73914923 | 73915142 | 73914923 | ID=Msa0374440-mRNA-1:exon:16938;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73915620 | 73915706 | 73915620 | ID=Msa0374440-mRNA-1:exon:16939;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73915818 | 73915930 | 73915818 | ID=Msa0374440-mRNA-1:exon:16940;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73916369 | 73916485 | 73916369 | ID=Msa0374440-mRNA-1:exon:16941;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73916566 | 73916662 | 73916566 | ID=Msa0374440-mRNA-1:exon:16942;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73916966 | 73917039 | 73916966 | ID=Msa0374440-mRNA-1:exon:16943;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73918132 | 73918185 | 73918132 | ID=Msa0374440-mRNA-1:exon:16944;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73918272 | 73918373 | 73918272 | ID=Msa0374440-mRNA-1:exon:16945;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73918506 | 73918564 | 73918506 | ID=Msa0374440-mRNA-1:exon:16946;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73919402 | 73919612 | 73919402 | ID=Msa0374440-mRNA-1:exon:16947;Parent=Msa0374440-mRNA-1 |
| chr3_1 | exon | 73919851 | 73920253 | 73919851 | ID=Msa0374440-mRNA-1:exon:16948;Parent=Msa0374440-mRNA-1 |
| chr3_1 | five_prime_UTR | 73914923 | 73915126 | 73914923 | ID=Msa0374440-mRNA-1:five_prime_utr;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73915127 | 73915142 | 73915127 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73915620 | 73915706 | 73915620 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73915818 | 73915930 | 73915818 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73916369 | 73916485 | 73916369 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73916566 | 73916662 | 73916566 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73916966 | 73917039 | 73916966 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73918132 | 73918185 | 73918132 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73918272 | 73918373 | 73918272 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73918506 | 73918564 | 73918506 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73919402 | 73919612 | 73919402 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | CDS | 73919851 | 73919910 | 73919851 | ID=Msa0374440-mRNA-1:cds;Parent=Msa0374440-mRNA-1 |
| chr3_1 | three_prime_UTR | 73919911 | 73920253 | 73919911 | ID=Msa0374440-mRNA-1:three_prime_utr;Parent=Msa0374440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
