AlfalfaGEDB | Msa0374570

M. sativa cultivar zhongmu-4 / Msa0374570

KEGG: K10295
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374570	XP_003602065.1	99.088	329	3	0	1	329	1	329	0.0	678

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374570	sp\|Q9XI00\|SKI32_ARATH	78.395	324	68	1	8	329	5	328	0.0	560

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374570	B7FL96	99.088	329	3	0	1	329	1	329	0.0	678

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0237320	Msa0374570	0.804841	1.779995e-49	-8.615850e-47
Msa0274740	Msa0374570	0.806166	9.387178e-50	-8.615850e-47
Msa0315540	Msa0374570	0.806676	7.327948e-50	-8.615850e-47
Msa0374360	Msa0374570	0.883185	5.554805e-71	-8.615850e-47
Msa0374440	Msa0374570	0.991840	7.850704e-190	-8.615850e-47
Msa0374530	Msa0374570	0.989541	1.439861e-178	-8.615850e-47
Msa0374570	Msa0439980	0.823486	1.349871e-53	-8.615850e-47
Msa0374570	Msa0469920	0.818700	1.709573e-52	-8.615850e-47
Msa0374570	Msa0525370	0.817367	3.420513e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374570	MtrunA17_Chr3g0124891	99.088	329	3	0	1	329	1	329	0.0	678
Msa0374570	MtrunA17_Chr4g0034401	98.182	55	1	0	20	74	17	71	7.13e-33	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374570	AT1G21760.1	78.395	324	68	1	8	329	5	328	0.0	560
Msa0374570	AT1G21760.2	78.395	324	68	1	8	329	5	328	0.0	560

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Find 108 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACTCTGTCTTTGG+TGG	0.559204	3_1:+74030102	Msa0374570:CDS
AAAACAGTAGGTCGCATGCC+TGG	0.485790	3_1:-74030303	None:intergenic
AAAACCGATTCCAACTCAGA+AGG	0.609545	3_1:-74027415	None:intergenic
AAAAGAGAAGAATCAACATG+AGG	0.664765	3_1:-74027652	None:intergenic
AAAATGGATTATTATGTTCC+TGG	0.362832	3_1:+74031659	Msa0374570:CDS
AAACCGATTCCAACTCAGAA+GGG	0.600214	3_1:-74027414	None:intergenic
AAATGTGGCTCTTACGGCCA+AGG	0.555691	3_1:+74028405	Msa0374570:CDS
AACCTGACGCCATGAGTGAA+AGG	0.560053	3_1:-74026895	None:intergenic
AACGTTAGACACCAGAGGTT+TGG	0.415161	3_1:-74026781	None:intergenic
AAGTAGAAATACCTACATCC+GGG	0.640220	3_1:+74028754	Msa0374570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGAAATGATTCAGAACA+CGG	-	chr3_1:74026860-74026879	None:intergenic	30.0%
ACAATTAGCGCAATAATAGA+TGG	-	chr3_1:74026990-74027009	None:intergenic	30.0%
TTCAGCTGAATATTCATTTG+AGG	+	chr3_1:74027121-74027140	Msa0374570:intron	30.0%
ATTGGAAAGATTATGTCCAT+AGG	+	chr3_1:74027212-74027231	Msa0374570:intron	30.0%
AGAATTTGAACTATGTCACA+AGG	-	chr3_1:74027264-74027283	None:intergenic	30.0%
CTGTTAACTACTTTGTTACA+AGG	+	chr3_1:74027449-74027468	Msa0374570:CDS	30.0%
TTAACTACTTTGTTACAAGG+AGG	+	chr3_1:74027452-74027471	Msa0374570:CDS	30.0%
AAAAGAGAAGAATCAACATG+AGG	-	chr3_1:74027655-74027674	None:intergenic	30.0%
TCATGTACGATATTTGATGT+GGG	+	chr3_1:74027837-74027856	Msa0374570:intron	30.0%
ATATTTGATGTGGGTATGTT+TGG	+	chr3_1:74027846-74027865	Msa0374570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	74026702	74032028	74026702	ID=Msa0374570;Name=Msa0374570
chr3_1	mRNA	74026702	74032028	74026702	ID=Msa0374570-mRNA-1;Parent=Msa0374570;Name=Msa0374570-mRNA-1;_AED=0.22;_eAED=0.22;_QI=203\|1\|1\|1\|1\|1\|11\|343\|329
chr3_1	exon	74026702	74026920	74026702	ID=Msa0374570-mRNA-1:exon:17045;Parent=Msa0374570-mRNA-1
chr3_1	exon	74027398	74027484	74027398	ID=Msa0374570-mRNA-1:exon:17046;Parent=Msa0374570-mRNA-1
chr3_1	exon	74027596	74027708	74027596	ID=Msa0374570-mRNA-1:exon:17047;Parent=Msa0374570-mRNA-1
chr3_1	exon	74028147	74028263	74028147	ID=Msa0374570-mRNA-1:exon:17048;Parent=Msa0374570-mRNA-1
chr3_1	exon	74028344	74028440	74028344	ID=Msa0374570-mRNA-1:exon:17049;Parent=Msa0374570-mRNA-1
chr3_1	exon	74028744	74028817	74028744	ID=Msa0374570-mRNA-1:exon:17050;Parent=Msa0374570-mRNA-1
chr3_1	exon	74029908	74029961	74029908	ID=Msa0374570-mRNA-1:exon:17051;Parent=Msa0374570-mRNA-1
chr3_1	exon	74030048	74030149	74030048	ID=Msa0374570-mRNA-1:exon:17052;Parent=Msa0374570-mRNA-1
chr3_1	exon	74030282	74030340	74030282	ID=Msa0374570-mRNA-1:exon:17053;Parent=Msa0374570-mRNA-1
chr3_1	exon	74031177	74031387	74031177	ID=Msa0374570-mRNA-1:exon:17054;Parent=Msa0374570-mRNA-1
chr3_1	exon	74031626	74032028	74031626	ID=Msa0374570-mRNA-1:exon:17055;Parent=Msa0374570-mRNA-1
chr3_1	five_prime_UTR	74026702	74026904	74026702	ID=Msa0374570-mRNA-1:five_prime_utr;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74026905	74026920	74026905	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74027398	74027484	74027398	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74027596	74027708	74027596	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74028147	74028263	74028147	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74028344	74028440	74028344	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74028744	74028817	74028744	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74029908	74029961	74029908	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74030048	74030149	74030048	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74030282	74030340	74030282	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74031177	74031387	74031177	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	CDS	74031626	74031685	74031626	ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1
chr3_1	three_prime_UTR	74031686	74032028	74031686	ID=Msa0374570-mRNA-1:three_prime_utr;Parent=Msa0374570-mRNA-1

Gene Sequence

>Msa0374570

ATGGCGTCAGGTTCAGATTTTGCTTTAACGGTCCCTTCTGAGTTGGAATCGGTTTTGAGGTTGAAGACTGTTAACTACTTTGTTACAAGGAGGCCATGGCTTGATCTTTATGGGGTTAATGTGAGACCTGTCGCGCCTTTTGGAAGTGCAAGTAGAAAGCCTCATGTTGATTCTTCTCTTTTACATCGTTGCTTACCAGATGAGCTGCTCTTTGAGGTATTTGCTCGAATGACTCCATATGACATGGGAAAAGCCTCTTGTGTGTGTCGAAAATGGCGGTATACAATTCGTAACCCTGTATTTTGGCGCAATGCATGCTTGAAGGGTTGGCAGCTCTCTGGAGCGGTTGAAAACTATAAGATACTTCAATCAAAATACGATGGCTCATGGCGGAAAATGTGGCTCTTACGGCCAAGGTTGCGATTTGACGGTCTTTATGCAAGTAGAAATACCTACATCCGGGTTGGAGTTGCAGAGTGGAAAATCACTAATCCAGTTCACGTGGTCTGTTATTACCGGTACCTGAGATTTTTTCCATCTGGGAAGTTTCTTTACAAGAATTCTTCTCAAAAGATCAAAGATGTGGTGAAGAGCATGAACTTTCGATCAGCCAAAACAGACTCTGTCTTTGGTGGACACTACACATTGACAGATGACAAGGTTGAAGCTGCTGTCCTGTATCCAGGCATGCGACCTACTGTTTTGAGGATACGCATGAGGTTAAGAGGAACAACTACAGGGGCTAACAATAGGATGGATTTGATCTCACTTGTCACTAGTGGTGTGGACACTAATGAGGCAAGTACATCTGAAGAGGACATTCTTGGAGTCGTTGAAGGATGGCAGGATGATGAAACACACAACCCCGATGTGCCAGCAGTCTCACATAAGAGGGGCATGACTCCCTTTGTCTTTGTTCCATTTGAGGAGGTGGAGACATCTCTTTTGAATTTGCCCGTGGAGAAAATGGATTATTATGTTCCTGGTTGA

Protein sequence

>Msa0374570

MASGSDFALTVPSELESVLRLKTVNYFVTRRPWLDLYGVNVRPVAPFGSASRKPHVDSSLLHRCLPDELLFEVFARMTPYDMGKASCVCRKWRYTIRNPVFWRNACLKGWQLSGAVENYKILQSKYDGSWRKMWLLRPRLRFDGLYASRNTYIRVGVAEWKITNPVHVVCYYRYLRFFPSGKFLYKNSSQKIKDVVKSMNFRSAKTDSVFGGHYTLTDDKVEAAVLYPGMRPTVLRIRMRLRGTTTGANNRMDLISLVTSGVDTNEASTSEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPFVFVPFEEVETSLLNLPVEKMDYYVPG*