Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374570 | XP_003602065.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374570 | sp|Q9XI00|SKI32_ARATH | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374570 | B7FL96 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0237320 | Msa0374570 | 0.804841 | 1.779995e-49 | -8.615850e-47 |
| Msa0374360 | Msa0374570 | 0.883185 | 5.554805e-71 | -8.615850e-47 |
| Msa0374440 | Msa0374570 | 0.991840 | 7.850704e-190 | -8.615850e-47 |
| Msa0374530 | Msa0374570 | 0.989541 | 1.439861e-178 | -8.615850e-47 |
| Msa0374570 | Msa0439980 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa0374570 | Msa0469920 | 0.818700 | 1.709573e-52 | -8.615850e-47 |
| Msa0374570 | Msa0525370 | 0.817367 | 3.420513e-52 | -8.615850e-47 |
| Msa0274740 | Msa0374570 | 0.806166 | 9.387178e-50 | -8.615850e-47 |
| Msa0315540 | Msa0374570 | 0.806676 | 7.327948e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374570 | MtrunA17_Chr3g0124891 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 678 |
| Msa0374570 | MtrunA17_Chr4g0034401 | 98.182 | 55 | 1 | 0 | 20 | 74 | 17 | 71 | 7.13e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374570 | AT1G21760.1 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
| Msa0374570 | AT1G21760.2 | 78.395 | 324 | 68 | 1 | 8 | 329 | 5 | 328 | 0.0 | 560 |
Find 108 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGAACCAGGTATTTC+AGG | 0.219347 | 3_1:-74031694 | None:intergenic |
| CAATTCGTAACCCTGTATTT+TGG | 0.228001 | 3_1:+74028214 | Msa0374570:CDS |
| GTGAGACCTGTCGCGCCTTT+TGG | 0.256079 | 3_1:+74027613 | Msa0374570:CDS |
| GAATTTGCCCGTGGAGAAAA+TGG | 0.273613 | 3_1:+74031643 | Msa0374570:CDS |
| CTTTGTCTTTGTTCCATTTG+AGG | 0.303655 | 3_1:+74031363 | Msa0374570:CDS |
| TCACTCATGGCGTCAGGTTC+AGG | 0.314341 | 3_1:+74026899 | Msa0374570:exon |
| TGTGAGACTGCTGGCACATC+GGG | 0.330474 | 3_1:-74031322 | None:intergenic |
| CCTCTTGTGTGTGTCGAAAA+TGG | 0.348503 | 3_1:+74028184 | Msa0374570:CDS |
| AAAATGGATTATTATGTTCC+TGG | 0.362832 | 3_1:+74031659 | Msa0374570:CDS |
| GCCAAAACAGACTCTGTCTT+TGG | 0.364430 | 3_1:+74030099 | Msa0374570:CDS |
| TTCTGCAGGTCTGTTATTAC+CGG | 0.373358 | 3_1:+74029900 | Msa0374570:intron |
| TGAATGCATACCACGTGAAC+TGG | 0.384411 | 3_1:-74028806 | None:intergenic |
| CATGCATTGCGCCAAAATAC+AGG | 0.392919 | 3_1:-74028225 | None:intergenic |
| ACCAGATGAGCTGCTCTTTG+AGG | 0.392938 | 3_1:+74027687 | Msa0374570:CDS |
| AGTTAAACACATGATTTGTA+TGG | 0.399824 | 3_1:-74031948 | None:intergenic |
| TATAAATATCGAAAGTTATG+AGG | 0.402100 | 3_1:-74031722 | None:intergenic |
| ACCAAAGACAGAGTCTGTTT+TGG | 0.404539 | 3_1:-74030100 | None:intergenic |
| TTCCTTTCACTCATGGCGTC+AGG | 0.406079 | 3_1:+74026893 | Msa0374570:exon |
| ACATCTGAAGAGGACATTCT+TGG | 0.408711 | 3_1:+74031262 | Msa0374570:CDS |
| ACCTCAAAGAGCAGCTCATC+TGG | 0.409773 | 3_1:-74027688 | None:intergenic |
| CGGCCAAGGTTGCGATTTGA+CGG | 0.413839 | 3_1:+74028419 | Msa0374570:CDS |
| AACGTTAGACACCAGAGGTT+TGG | 0.415161 | 3_1:-74026781 | None:intergenic |
| TAAAACTGTACCTCCTCAAA+TGG | 0.415424 | 3_1:-74031376 | None:intergenic |
| GGCGGAAAATGTGGCTCTTA+CGG | 0.415806 | 3_1:+74028399 | Msa0374570:CDS |
| CCTCAATTTCCTTTCACTCA+TGG | 0.417964 | 3_1:+74026886 | Msa0374570:exon |
| CAACTACAGGGGCTAACAAT+AGG | 0.418268 | 3_1:+74031188 | Msa0374570:CDS |
| CTGTTAACTACTTTGTTACA+AGG | 0.425322 | 3_1:+74027449 | Msa0374570:CDS |
| ACACCAGAGGTTTGGTTTCG+CGG | 0.432398 | 3_1:-74026773 | None:intergenic |
| GAAGCTGCTGTCCTGTATCC+AGG | 0.445399 | 3_1:+74030285 | Msa0374570:CDS |
| ATCTGGGAAGTTTCTTTACA+AGG | 0.447611 | 3_1:+74029940 | Msa0374570:CDS |
| AGCAGAACAAAAGATAAATT+CGG | 0.448603 | 3_1:-74031805 | None:intergenic |
| CAATTGAACCAGGTATTTCA+GGG | 0.451234 | 3_1:-74031693 | None:intergenic |
| TGCCAGCAGTCTCACATAAG+AGG | 0.453131 | 3_1:+74031329 | Msa0374570:CDS |
| CAAGTAGAAATACCTACATC+CGG | 0.465192 | 3_1:+74028753 | Msa0374570:CDS |
| TCCATGTGGTATAGGTTAAG+AGG | 0.465451 | 3_1:+74031163 | Msa0374570:intron |
| TTGGCGCAATGCATGCTTGA+AGG | 0.473896 | 3_1:+74028233 | Msa0374570:CDS |
| AGGTTAAGAGGAACAACTAC+AGG | 0.479419 | 3_1:+74031175 | Msa0374570:intron |
| GGTCCCTTCTGAGTTGGAAT+CGG | 0.480778 | 3_1:+74027411 | Msa0374570:CDS |
| TTTCTACTTGCACTTCCAAA+AGG | 0.482993 | 3_1:-74027628 | None:intergenic |
| GCACTTCCAAAAGGCGCGAC+AGG | 0.483438 | 3_1:-74027619 | None:intergenic |
| GACATTCTTGGAGTCGTTGA+AGG | 0.484136 | 3_1:+74031274 | Msa0374570:CDS |
| AAAACAGTAGGTCGCATGCC+TGG | 0.485790 | 3_1:-74030303 | None:intergenic |
| ATGTGAGACTGCTGGCACAT+CGG | 0.486579 | 3_1:-74031323 | None:intergenic |
| TGCATGCTTGAAGGGTTGGC+AGG | 0.501973 | 3_1:+74028242 | Msa0374570:CDS |
| GGTTGTAATCCGAAAACATT+GGG | 0.515132 | 3_1:-74026719 | None:intergenic |
| TGGAGTCGTTGAAGGATGGC+AGG | 0.521728 | 3_1:+74031282 | Msa0374570:CDS |
| TAGGTCGCATGCCTGGATAC+AGG | 0.528585 | 3_1:-74030296 | None:intergenic |
| GCAATGCATGCTTGAAGGGT+TGG | 0.533926 | 3_1:+74028238 | Msa0374570:CDS |
| TTTAACGGTCCCTTCTGAGT+TGG | 0.534181 | 3_1:+74027405 | Msa0374570:CDS |
| TTGATCTCACTTGTCACTAG+TGG | 0.534671 | 3_1:+74031217 | Msa0374570:CDS |
| TCCACTCTGCAACTCCAACC+CGG | 0.540341 | 3_1:-74028772 | None:intergenic |
| TGGCGCAATGCATGCTTGAA+GGG | 0.540704 | 3_1:+74028234 | Msa0374570:CDS |
| TTCTTGGAGTCGTTGAAGGA+TGG | 0.542284 | 3_1:+74031278 | Msa0374570:CDS |
| CCCCTCTTATGTGAGACTGC+TGG | 0.544075 | 3_1:-74031331 | None:intergenic |
| TGTCTTTGTTCCATTTGAGG+AGG | 0.547210 | 3_1:+74031366 | Msa0374570:CDS |
| ATTCCGCGAAACCAAACCTC+TGG | 0.551803 | 3_1:+74026770 | Msa0374570:five_prime_UTR |
| GCCAGCAGTCTCACATAAGA+GGG | 0.555369 | 3_1:+74031330 | Msa0374570:CDS |
| AAATGTGGCTCTTACGGCCA+AGG | 0.555691 | 3_1:+74028405 | Msa0374570:CDS |
| TCAAATGGAACAAAGACAAA+GGG | 0.558084 | 3_1:-74031361 | None:intergenic |
| AAAACAGACTCTGTCTTTGG+TGG | 0.559204 | 3_1:+74030102 | Msa0374570:CDS |
| AACCTGACGCCATGAGTGAA+AGG | 0.560053 | 3_1:-74026895 | None:intergenic |
| GTTACAAGGAGGCCATGGCT+TGG | 0.560559 | 3_1:+74027463 | Msa0374570:CDS |
| AATCAAAATACGATGGCTCA+TGG | 0.565621 | 3_1:+74028378 | Msa0374570:CDS |
| AATTTGCGTACTTGCATGCG+TGG | 0.567773 | 3_1:+74031750 | Msa0374570:three_prime_UTR |
| TGAAAGGAAATTGAGGTGAA+AGG | 0.571755 | 3_1:-74026879 | None:intergenic |
| ACTTTGTTACAAGGAGGCCA+TGG | 0.571990 | 3_1:+74027458 | Msa0374570:CDS |
| TTGTAAAGAAACTTCCCAGA+TGG | 0.574995 | 3_1:-74029938 | None:intergenic |
| CCATGAGTGAAAGGAAATTG+AGG | 0.575708 | 3_1:-74026886 | None:intergenic |
| CTCAAATGGAACAAAGACAA+AGG | 0.580041 | 3_1:-74031362 | None:intergenic |
| TGCAACTCCAACCCGGATGT+AGG | 0.586345 | 3_1:-74028765 | None:intergenic |
| ATGGCTCATGGCGGAAAATG+TGG | 0.589306 | 3_1:+74028390 | Msa0374570:CDS |
| TACAGGGGCTAACAATAGGA+TGG | 0.594300 | 3_1:+74031192 | Msa0374570:CDS |
| TTACCGTCAAATCGCAACCT+TGG | 0.595041 | 3_1:-74028422 | None:intergenic |
| TAATTAAAGGTACTGTAGTA+CGG | 0.597623 | 3_1:+74026694 | None:intergenic |
| AAACCGATTCCAACTCAGAA+GGG | 0.600214 | 3_1:-74027414 | None:intergenic |
| TCGAATGACTCCATATGACA+TGG | 0.601277 | 3_1:+74028155 | Msa0374570:CDS |
| AGAAATACCTACATCCGGGT+TGG | 0.606217 | 3_1:+74028758 | Msa0374570:CDS |
| GGTTAAGAGGAACAACTACA+GGG | 0.606446 | 3_1:+74031176 | Msa0374570:intron |
| TTCAGGGGCATCATTCAACC+AGG | 0.608305 | 3_1:-74031677 | None:intergenic |
| TTCTCAAAAGATCAAAGATG+TGG | 0.608842 | 3_1:+74030053 | Msa0374570:CDS |
| CTACACATTGACAGATGACA+AGG | 0.608992 | 3_1:+74030128 | Msa0374570:CDS |
| TGAGGCAAGTACATCTGAAG+AGG | 0.609172 | 3_1:+74031252 | Msa0374570:CDS |
| AAAACCGATTCCAACTCAGA+AGG | 0.609545 | 3_1:-74027415 | None:intergenic |
| TAGTGGTGTGGACACTAATG+AGG | 0.610301 | 3_1:+74031234 | Msa0374570:CDS |
| ATGCGTATCCTCAAAACAGT+AGG | 0.614318 | 3_1:-74030315 | None:intergenic |
| ATGCATTGCGCCAAAATACA+GGG | 0.615006 | 3_1:-74028224 | None:intergenic |
| GAGGTATTTACAATTGAACC+AGG | 0.615601 | 3_1:-74031703 | None:intergenic |
| CTCACTTGTCACTAGTGGTG+TGG | 0.615722 | 3_1:+74031222 | Msa0374570:CDS |
| CGGTTGTAATCCGAAAACAT+TGG | 0.624551 | 3_1:-74026720 | None:intergenic |
| TTTGGTTAAAGATCTTTATG+GGG | 0.625965 | 3_1:+74027585 | Msa0374570:intron |
| AATGATGCCCCTGAAATACC+TGG | 0.630188 | 3_1:+74031685 | Msa0374570:exon |
| AAGTAGAAATACCTACATCC+GGG | 0.640220 | 3_1:+74028754 | Msa0374570:CDS |
| AATTGAACCAGGTATTTCAG+GGG | 0.642992 | 3_1:-74031692 | None:intergenic |
| CGAATGACTCCATATGACAT+GGG | 0.647091 | 3_1:+74028156 | Msa0374570:CDS |
| ATACTTCAATCAAAATACGA+TGG | 0.652918 | 3_1:+74028371 | Msa0374570:CDS |
| GAATGAAATGATTCAGAACA+CGG | 0.655313 | 3_1:-74026857 | None:intergenic |
| GCGTTGTACATACCAAGCCA+TGG | 0.657436 | 3_1:-74027475 | None:intergenic |
| TTAACTACTTTGTTACAAGG+AGG | 0.664306 | 3_1:+74027452 | Msa0374570:CDS |
| AAAAGAGAAGAATCAACATG+AGG | 0.664765 | 3_1:-74027652 | None:intergenic |
| TCTGACATGCACATGCCACA+CGG | 0.673940 | 3_1:-74026740 | None:intergenic |
| TCCGGGTTGGAGTTGCAGAG+TGG | 0.680422 | 3_1:+74028771 | Msa0374570:CDS |
| AATCACTAATCCAGTTCACG+TGG | 0.691915 | 3_1:+74028796 | Msa0374570:CDS |
| GTATCAACGTTAGACACCAG+AGG | 0.695810 | 3_1:-74026786 | None:intergenic |
| CCAGCAGTCTCACATAAGAG+GGG | 0.706035 | 3_1:+74031331 | Msa0374570:CDS |
| CAAAATACGATGGCTCATGG+CGG | 0.731935 | 3_1:+74028381 | Msa0374570:CDS |
| GTTAAGAGGAACAACTACAG+GGG | 0.746465 | 3_1:+74031177 | Msa0374570:CDS |
| GTGAGACTGCTGGCACATCG+GGG | 0.755204 | 3_1:-74031321 | None:intergenic |
| CTTGTGTGTGTCGAAAATGG+CGG | 0.757415 | 3_1:+74028187 | Msa0374570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAAATCAGA+TGG | + | chr3_1:74027329-74027348 | Msa0374570:intron | 10.0% |
| !!! | CATTCATATATATTTTAAAT+AGG | - | chr3_1:74029751-74029770 | None:intergenic | 10.0% |
| !!! | ATTCAAATCTTTAAAATCTT+TGG | + | chr3_1:74027011-74027030 | Msa0374570:intron | 15.0% |
| !!! | AATTTTCAACAATTTTAACA+TGG | + | chr3_1:74027054-74027073 | Msa0374570:intron | 15.0% |
| !!! | ATTTTCAACAATTTTAACAT+GGG | + | chr3_1:74027055-74027074 | Msa0374570:intron | 15.0% |
| !!! | TAAATTAATAATTTTGAGAC+CGG | + | chr3_1:74027094-74027113 | Msa0374570:intron | 15.0% |
| !! | TATTATTAATTAAGATGACA+CGG | - | chr3_1:74027313-74027332 | None:intergenic | 15.0% |
| !! | AACACAATAATAAATAAACA+TGG | - | chr3_1:74027506-74027525 | None:intergenic | 15.0% |
| !!! | TAAAAATAATATTCTGAAAG+TGG | + | chr3_1:74028618-74028637 | Msa0374570:intron | 15.0% |
| !! | GATATTAAATTGATAAATAG+TGG | - | chr3_1:74028942-74028961 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAAAA+AGG | + | chr3_1:74029047-74029066 | Msa0374570:intron | 15.0% |
| !!! | ATTTTAAAGCCTTTTTTTTT+AGG | - | chr3_1:74029059-74029078 | None:intergenic | 15.0% |
| !! | GCATTATTTAAATCTATATA+CGG | + | chr3_1:74030223-74030242 | Msa0374570:intron | 15.0% |
| !! | AATTTACATGTGATATTATT+TGG | - | chr3_1:74030680-74030699 | None:intergenic | 15.0% |
| !!! | AATCATATATCCTTTATTTT+TGG | + | chr3_1:74031987-74032006 | Msa0374570:three_prime_UTR | 15.0% |
| !!! | TTTTCAAATTCCAAAAATAA+AGG | - | chr3_1:74032000-74032019 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAACAATGAAGA+AGG | - | chr3_1:74026960-74026979 | None:intergenic | 20.0% |
| !! | GCATATTACATAAATGAAAT+TGG | + | chr3_1:74027194-74027213 | Msa0374570:intron | 20.0% |
| !!! | CTTATTGTTTTTATGTGTTT+TGG | + | chr3_1:74027567-74027586 | Msa0374570:intron | 20.0% |
| !!! | TTTTGGTTAAAGATCTTTAT+GGG | + | chr3_1:74027584-74027603 | Msa0374570:intron | 20.0% |
| !!! | ATTTATTGAATACATTTTGC+AGG | + | chr3_1:74028125-74028144 | Msa0374570:intron | 20.0% |
| !! | AATAAAAAACTTAACCATCA+CGG | - | chr3_1:74028505-74028524 | None:intergenic | 20.0% |
| !! | TGGAAATTTATCGTATTTAA+AGG | + | chr3_1:74028546-74028565 | Msa0374570:intron | 20.0% |
| !! | AGACTAACAGAATTTAAAAA+AGG | - | chr3_1:74028867-74028886 | None:intergenic | 20.0% |
| !! | AATTGTAGTATTTGAATAGA+GGG | + | chr3_1:74029393-74029412 | Msa0374570:intron | 20.0% |
| !! | AACAATTATAATGGTTAACA+AGG | - | chr3_1:74029424-74029443 | None:intergenic | 20.0% |
| !! | TTAACCATTATAATTGTTGA+GGG | + | chr3_1:74029426-74029445 | Msa0374570:intron | 20.0% |
| !! | TTATTCATATGCTTAAAGAT+TGG | - | chr3_1:74029791-74029810 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGGTTATAATT+TGG | + | chr3_1:74029951-74029970 | Msa0374570:intron | 20.0% |
| !! | TCATTATTTGTATATCTACT+AGG | + | chr3_1:74030174-74030193 | Msa0374570:intron | 20.0% |
| !! | AGAATTATGTATTATTAGTG+AGG | + | chr3_1:74030511-74030530 | Msa0374570:intron | 20.0% |
| !! | TCACTTAATATAAGTTAGAA+TGG | + | chr3_1:74030760-74030779 | Msa0374570:intron | 20.0% |
| !!! | ATTTTTTTAGCTTACAGAAA+AGG | - | chr3_1:74031038-74031057 | None:intergenic | 20.0% |
| !! | AACAAATTGAGACAATATTT+AGG | - | chr3_1:74031451-74031470 | None:intergenic | 20.0% |
| !!! | CTATAGTATTTTTCTATTTG+AGG | + | chr3_1:74031500-74031519 | Msa0374570:intron | 20.0% |
| !! | TATAAATATCGAAAGTTATG+AGG | - | chr3_1:74031725-74031744 | None:intergenic | 20.0% |
| !!! | AACATGGGTTTTAAATTTGT+TGG | + | chr3_1:74027070-74027089 | Msa0374570:intron | 25.0% |
| !!! | ACATGGGTTTTAAATTTGTT+GGG | + | chr3_1:74027071-74027090 | Msa0374570:intron | 25.0% |
| !! | GTTTGTAGATTTTGCTTTAA+CGG | + | chr3_1:74027390-74027409 | Msa0374570:intron | 25.0% |
| !!! | GTTTTGGTTAAAGATCTTTA+TGG | + | chr3_1:74027583-74027602 | Msa0374570:intron | 25.0% |
| ! | TTTGGTTAAAGATCTTTATG+GGG | + | chr3_1:74027585-74027604 | Msa0374570:intron | 25.0% |
| ! | ATGTATGTAACTACACTATT+TGG | + | chr3_1:74027726-74027745 | Msa0374570:intron | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | + | chr3_1:74027914-74027933 | Msa0374570:intron | 25.0% |
| ! | CTGTTCTTAAAATAAGAATC+AGG | + | chr3_1:74028047-74028066 | Msa0374570:intron | 25.0% |
| ! | ATAAGAATCAGGAAAGTTTA+TGG | + | chr3_1:74028058-74028077 | Msa0374570:intron | 25.0% |
| ! | CAAGTCTAATTTCTGATTAT+GGG | + | chr3_1:74028307-74028326 | Msa0374570:intron | 25.0% |
| ! | AAGTCTAATTTCTGATTATG+GGG | + | chr3_1:74028308-74028327 | Msa0374570:intron | 25.0% |
| ! | ATACTTCAATCAAAATACGA+TGG | + | chr3_1:74028371-74028390 | Msa0374570:CDS | 25.0% |
| ! | ATAAAAAACTTAACCATCAC+GGG | - | chr3_1:74028504-74028523 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAGAACAGAAA+AGG | - | chr3_1:74028687-74028706 | None:intergenic | 25.0% |
| !!! | TATGCCAATTAGTCTTATTA+TGG | + | chr3_1:74028708-74028727 | Msa0374570:intron | 25.0% |
| ! | TGAAAACCTCATGAATTAAA+AGG | + | chr3_1:74029128-74029147 | Msa0374570:intron | 25.0% |
| ! | TCATGCTGAAAATGAATTTA+AGG | + | chr3_1:74029167-74029186 | Msa0374570:intron | 25.0% |
| ! | GAATTGTAGTATTTGAATAG+AGG | + | chr3_1:74029392-74029411 | Msa0374570:intron | 25.0% |
| ! | GTTAACCATTATAATTGTTG+AGG | + | chr3_1:74029425-74029444 | Msa0374570:intron | 25.0% |
| ! | TAACCATTATAATTGTTGAG+GGG | + | chr3_1:74029427-74029446 | Msa0374570:intron | 25.0% |
| ! | TGTAAATTTATGTTTACCGA+TGG | - | chr3_1:74029667-74029686 | None:intergenic | 25.0% |
| ! | TCGGTAAACATAAATTTACA+AGG | + | chr3_1:74029667-74029686 | Msa0374570:intron | 25.0% |
| !! | TGTTAACTTAACCTTTTAAC+AGG | - | chr3_1:74030374-74030393 | None:intergenic | 25.0% |
| ! | AAACTAATATTTAGCACAAG+TGG | + | chr3_1:74031062-74031081 | Msa0374570:intron | 25.0% |
| ! | ATATATAAGCATAGTGCAAA+AGG | - | chr3_1:74031140-74031159 | None:intergenic | 25.0% |
| ! | ACAAAAAGGCAAAAATGTAA+GGG | - | chr3_1:74031602-74031621 | None:intergenic | 25.0% |
| ! | TACAAAAAGGCAAAAATGTA+AGG | - | chr3_1:74031603-74031622 | None:intergenic | 25.0% |
| !! | ACATTTTTGCCTTTTTGTAT+AGG | + | chr3_1:74031604-74031623 | Msa0374570:intron | 25.0% |
| !! | ATAATAATCCATTTTCTCCA+CGG | - | chr3_1:74031654-74031673 | None:intergenic | 25.0% |
| !!! | AAAATGGATTATTATGTTCC+TGG | + | chr3_1:74031659-74031678 | Msa0374570:CDS | 25.0% |
| ! | AGCAGAACAAAAGATAAATT+CGG | - | chr3_1:74031808-74031827 | None:intergenic | 25.0% |
| ! | CTCCTATGTAACTATAAAAA+CGG | + | chr3_1:74031833-74031852 | Msa0374570:three_prime_UTR | 25.0% |
| !!! | AACCGTTTTTATAGTTACAT+AGG | - | chr3_1:74031838-74031857 | None:intergenic | 25.0% |
| ! | ATAAAAACGGTTTGTACATA+AGG | + | chr3_1:74031846-74031865 | Msa0374570:three_prime_UTR | 25.0% |
| ! | TAAAAACGGTTTGTACATAA+GGG | + | chr3_1:74031847-74031866 | Msa0374570:three_prime_UTR | 25.0% |
| !! | AGTTAAACACATGATTTGTA+TGG | - | chr3_1:74031951-74031970 | None:intergenic | 25.0% |
| GAATGAAATGATTCAGAACA+CGG | - | chr3_1:74026860-74026879 | None:intergenic | 30.0% | |
| ACAATTAGCGCAATAATAGA+TGG | - | chr3_1:74026990-74027009 | None:intergenic | 30.0% | |
| TTCAGCTGAATATTCATTTG+AGG | + | chr3_1:74027121-74027140 | Msa0374570:intron | 30.0% | |
| ATTGGAAAGATTATGTCCAT+AGG | + | chr3_1:74027212-74027231 | Msa0374570:intron | 30.0% | |
| AGAATTTGAACTATGTCACA+AGG | - | chr3_1:74027264-74027283 | None:intergenic | 30.0% | |
| CTGTTAACTACTTTGTTACA+AGG | + | chr3_1:74027449-74027468 | Msa0374570:CDS | 30.0% | |
| TTAACTACTTTGTTACAAGG+AGG | + | chr3_1:74027452-74027471 | Msa0374570:CDS | 30.0% | |
| AAAAGAGAAGAATCAACATG+AGG | - | chr3_1:74027655-74027674 | None:intergenic | 30.0% | |
| !!! | TGGTCATGACTTTTTTGATA+TGG | + | chr3_1:74027746-74027765 | Msa0374570:intron | 30.0% |
| !!! | ATGACTTTTTTGATATGGTG+TGG | + | chr3_1:74027751-74027770 | Msa0374570:intron | 30.0% |
| !!! | TGACTTTTTTGATATGGTGT+GGG | + | chr3_1:74027752-74027771 | Msa0374570:intron | 30.0% |
| TCATGTACGATATTTGATGT+GGG | + | chr3_1:74027837-74027856 | Msa0374570:intron | 30.0% | |
| ATATTTGATGTGGGTATGTT+TGG | + | chr3_1:74027846-74027865 | Msa0374570:intron | 30.0% | |
| ! | TTAAGTTTCAAGTGTACGAA+GGG | - | chr3_1:74027910-74027929 | None:intergenic | 30.0% |
| ! | TTTAAGTTTCAAGTGTACGA+AGG | - | chr3_1:74027911-74027930 | None:intergenic | 30.0% |
| CACAACTTATTGACAGTATT+TGG | + | chr3_1:74027986-74028005 | Msa0374570:intron | 30.0% | |
| GCAAGTCTAATTTCTGATTA+TGG | + | chr3_1:74028306-74028325 | Msa0374570:intron | 30.0% | |
| TAGTTGAAACAAATGCTGTA+TGG | + | chr3_1:74028526-74028545 | Msa0374570:intron | 30.0% | |
| !!! | TTATTTTTAGTCTTGTGCAG+TGG | - | chr3_1:74028607-74028626 | None:intergenic | 30.0% |
| AGGACCATAATAAGACTAAT+TGG | - | chr3_1:74028715-74028734 | None:intergenic | 30.0% | |
| AAGGATATCTATTTCGTAGT+AGG | - | chr3_1:74028848-74028867 | None:intergenic | 30.0% | |
| TTCATTGTTAGATCTGCATT+CGG | + | chr3_1:74028890-74028909 | Msa0374570:intron | 30.0% | |
| !!! | GATCAGAAACTAGTTTTATG+AGG | + | chr3_1:74028999-74029018 | Msa0374570:intron | 30.0% |
| ! | ATTGTTTTCATGCAAACACT+AGG | + | chr3_1:74029077-74029096 | Msa0374570:intron | 30.0% |
| ! | TTGTTTTCATGCAAACACTA+GGG | + | chr3_1:74029078-74029097 | Msa0374570:intron | 30.0% |
| !! | TCAGATCCTTTTAATTCATG+AGG | - | chr3_1:74029137-74029156 | None:intergenic | 30.0% |
| ! | TTATTTTCCTATACTCTGCA+GGG | - | chr3_1:74029264-74029283 | None:intergenic | 30.0% |
| TTGTATTGTCCTTGATATAG+CGG | + | chr3_1:74029464-74029483 | Msa0374570:intron | 30.0% | |
| GAGGAATTCCATGTAAAAAT+TGG | + | chr3_1:74029530-74029549 | Msa0374570:intron | 30.0% | |
| ! | CTGGAAAACCAATTTTTACA+TGG | - | chr3_1:74029541-74029560 | None:intergenic | 30.0% |
| ! | TTCATCTAAGCATTGCATTT+AGG | + | chr3_1:74029712-74029731 | Msa0374570:intron | 30.0% |
| TACTTCACAAGATTTACTCA+TGG | - | chr3_1:74029832-74029851 | None:intergenic | 30.0% | |
| TTCTCAAAAGATCAAAGATG+TGG | + | chr3_1:74030053-74030072 | Msa0374570:CDS | 30.0% | |
| AAATCTATATACGGATCTTG+AGG | + | chr3_1:74030232-74030251 | Msa0374570:intron | 30.0% | |
| TTTAACAGGATATGCTATCA+AGG | - | chr3_1:74030360-74030379 | None:intergenic | 30.0% | |
| TGATAGCATATCCTGTTAAA+AGG | + | chr3_1:74030360-74030379 | Msa0374570:intron | 30.0% | |
| ! | GGAATACAAAGTTTCTTTTC+TGG | - | chr3_1:74030404-74030423 | None:intergenic | 30.0% |
| ! | AGGAACAATTACCATTTTGT+TGG | + | chr3_1:74030553-74030572 | Msa0374570:intron | 30.0% |
| ! | ACAATTACCATTTTGTTGGT+TGG | + | chr3_1:74030557-74030576 | Msa0374570:intron | 30.0% |
| !!! | ATTTTGTAGACTTGTTAAGG+TGG | - | chr3_1:74030741-74030760 | None:intergenic | 30.0% |
| !!! | GTGATTTTGTAGACTTGTTA+AGG | - | chr3_1:74030744-74030763 | None:intergenic | 30.0% |
| AAGTGATGTAAGATAGAGAA+GGG | - | chr3_1:74030819-74030838 | None:intergenic | 30.0% | |
| TAAGTGATGTAAGATAGAGA+AGG | - | chr3_1:74030820-74030839 | None:intergenic | 30.0% | |
| !!! | ACGCAATCAAAACTTTTTCA+CGG | - | chr3_1:74030860-74030879 | None:intergenic | 30.0% |
| AACAGTTGTGTACTTAAGAA+TGG | + | chr3_1:74030887-74030906 | Msa0374570:intron | 30.0% | |
| ATGTAGGTAGAATTTGAACA+AGG | + | chr3_1:74030951-74030970 | Msa0374570:intron | 30.0% | |
| ! | AAGGAAAGTATGCAGTTTAT+TGG | + | chr3_1:74030970-74030989 | Msa0374570:intron | 30.0% |
| TGATTCTCTGGTCTAATATT+TGG | - | chr3_1:74031090-74031109 | None:intergenic | 30.0% | |
| ACAAACGTGTCAAAAAAGAT+TGG | + | chr3_1:74031109-74031128 | Msa0374570:intron | 30.0% | |
| TGCTTATATATATCTCCATG+TGG | + | chr3_1:74031149-74031168 | Msa0374570:intron | 30.0% | |
| TATATATCTCCATGTGGTAT+AGG | + | chr3_1:74031155-74031174 | Msa0374570:intron | 30.0% | |
| TCAAATGGAACAAAGACAAA+GGG | - | chr3_1:74031364-74031383 | None:intergenic | 30.0% | |
| CAAAAAGGCAAAAATGTAAG+GGG | - | chr3_1:74031601-74031620 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTTTTGTATAGG+TGG | + | chr3_1:74031607-74031626 | Msa0374570:intron | 30.0% |
| ! | TAATAATCCATTTTCTCCAC+GGG | - | chr3_1:74031653-74031672 | None:intergenic | 30.0% |
| GGTTGTAATCCGAAAACATT+GGG | - | chr3_1:74026722-74026741 | None:intergenic | 35.0% | |
| TGAAAGGAAATTGAGGTGAA+AGG | - | chr3_1:74026882-74026901 | None:intergenic | 35.0% | |
| CTAAAACAATGAAGAAGGTG+CGG | - | chr3_1:74026955-74026974 | None:intergenic | 35.0% | |
| AGTTCAAATTCTCTCCTAGA+CGG | + | chr3_1:74027272-74027291 | Msa0374570:intron | 35.0% | |
| ! | TCATCATTTTACAACCGTCT+AGG | - | chr3_1:74027289-74027308 | None:intergenic | 35.0% |
| TTTCTACTTGCACTTCCAAA+AGG | - | chr3_1:74027631-74027650 | None:intergenic | 35.0% | |
| CTCATGTACGATATTTGATG+TGG | + | chr3_1:74027836-74027855 | Msa0374570:intron | 35.0% | |
| ! | CAATTCGTAACCCTGTATTT+TGG | + | chr3_1:74028214-74028233 | Msa0374570:CDS | 35.0% |
| AATCAAAATACGATGGCTCA+TGG | + | chr3_1:74028378-74028397 | Msa0374570:CDS | 35.0% | |
| AATATGAGGGGCAAGAAATA+AGG | - | chr3_1:74028472-74028491 | None:intergenic | 35.0% | |
| ! | TAAAGGTGTGATTCTCTTCT+AGG | + | chr3_1:74028563-74028582 | Msa0374570:intron | 35.0% |
| TTATTATGGTCCTGCATCAT+AGG | + | chr3_1:74028722-74028741 | Msa0374570:intron | 35.0% | |
| CAAGTAGAAATACCTACATC+CGG | + | chr3_1:74028753-74028772 | Msa0374570:CDS | 35.0% | |
| AAGTAGAAATACCTACATCC+GGG | + | chr3_1:74028754-74028773 | Msa0374570:CDS | 35.0% | |
| ! | TCCATGAAACTCTAGAGAAA+TGG | + | chr3_1:74029210-74029229 | Msa0374570:intron | 35.0% |
| !! | TCCATTTCTCTAGAGTTTCA+TGG | - | chr3_1:74029214-74029233 | None:intergenic | 35.0% |
| !! | CTTATTTTCCTATACTCTGC+AGG | - | chr3_1:74029265-74029284 | None:intergenic | 35.0% |
| ! | TTGGGCATGTCAAAGAATTT+TGG | + | chr3_1:74029327-74029346 | Msa0374570:intron | 35.0% |
| TGTGACTGACTAATTAAGCA+GGG | - | chr3_1:74029370-74029389 | None:intergenic | 35.0% | |
| !! | AAAAGCATTCCGCTATATCA+AGG | - | chr3_1:74029476-74029495 | None:intergenic | 35.0% |
| ! | GTGTTTTTCATCCTCATAGA+TGG | + | chr3_1:74029508-74029527 | Msa0374570:intron | 35.0% |
| ! | TTTTTCATCCTCATAGATGG+AGG | + | chr3_1:74029511-74029530 | Msa0374570:intron | 35.0% |
| TAAAACACACCTTCTGATGA+AGG | - | chr3_1:74029570-74029589 | None:intergenic | 35.0% | |
| CATATGGTATATCCACTATC+CGG | - | chr3_1:74029626-74029645 | None:intergenic | 35.0% | |
| TGGATATACCATATGCTATC+TGG | + | chr3_1:74029631-74029650 | Msa0374570:intron | 35.0% | |
| ! | ATCTAAGCATTGCATTTAGG+AGG | + | chr3_1:74029715-74029734 | Msa0374570:intron | 35.0% |
| ATAACAGACCTGCAGAATAT+GGG | - | chr3_1:74029897-74029916 | None:intergenic | 35.0% | |
| AATAACAGACCTGCAGAATA+TGG | - | chr3_1:74029898-74029917 | None:intergenic | 35.0% | |
| ATGGAAAAAATCTCAGGTAC+CGG | - | chr3_1:74029922-74029941 | None:intergenic | 35.0% | |
| !!! | TACCTGAGATTTTTTCCATC+TGG | + | chr3_1:74029923-74029942 | Msa0374570:CDS | 35.0% |
| !!! | ACCTGAGATTTTTTCCATCT+GGG | + | chr3_1:74029924-74029943 | Msa0374570:CDS | 35.0% |
| TTGTAAAGAAACTTCCCAGA+TGG | - | chr3_1:74029941-74029960 | None:intergenic | 35.0% | |
| ATCTGGGAAGTTTCTTTACA+AGG | + | chr3_1:74029940-74029959 | Msa0374570:CDS | 35.0% | |
| GTTCTCATACAATCACATAC+AGG | - | chr3_1:74030012-74030031 | None:intergenic | 35.0% | |
| GCTATTGATATCATCATTGC+AGG | + | chr3_1:74030260-74030279 | Msa0374570:intron | 35.0% | |
| GAAACTTTGTATTCCCTATC+TGG | + | chr3_1:74030409-74030428 | Msa0374570:intron | 35.0% | |
| TTTGTATTCCCTATCTGGTT+AGG | + | chr3_1:74030414-74030433 | Msa0374570:intron | 35.0% | |
| AAATCCAACCTAACCAGATA+GGG | - | chr3_1:74030425-74030444 | None:intergenic | 35.0% | |
| TTGATCTATTCTCTTAGCAG+AGG | - | chr3_1:74030463-74030482 | None:intergenic | 35.0% | |
| GCTTCTTCTAATGCTTTAAC+AGG | + | chr3_1:74030533-74030552 | Msa0374570:intron | 35.0% | |
| ATGAATGCCAACCAACAAAA+TGG | - | chr3_1:74030567-74030586 | None:intergenic | 35.0% | |
| GTTGGTTGGCATTCATTAAT+TGG | + | chr3_1:74030571-74030590 | Msa0374570:intron | 35.0% | |
| TTCATTAATCCTCATCTACC+AGG | + | chr3_1:74030698-74030717 | Msa0374570:intron | 35.0% | |
| TCATTAATCCTCATCTACCA+GGG | + | chr3_1:74030699-74030718 | Msa0374570:intron | 35.0% | |
| ! | GGTCGATCACAATTACATTT+TGG | - | chr3_1:74030798-74030817 | None:intergenic | 35.0% |
| CTATCTTACATCACTTACAC+TGG | + | chr3_1:74030823-74030842 | Msa0374570:intron | 35.0% | |
| ! | GTTTATTAGCCTCTGAATGT+AGG | + | chr3_1:74030935-74030954 | Msa0374570:intron | 35.0% |
| CAAATTCTACCTACATTCAG+AGG | - | chr3_1:74030947-74030966 | None:intergenic | 35.0% | |
| CTCAAATGGAACAAAGACAA+AGG | - | chr3_1:74031365-74031384 | None:intergenic | 35.0% | |
| CTTTGTCTTTGTTCCATTTG+AGG | + | chr3_1:74031363-74031382 | Msa0374570:CDS | 35.0% | |
| TAAAACTGTACCTCCTCAAA+TGG | - | chr3_1:74031379-74031398 | None:intergenic | 35.0% | |
| ATGTCTCCACCTATACAAAA+AGG | - | chr3_1:74031616-74031635 | None:intergenic | 35.0% | |
| AATTGAACCAGGTATTTCAG+GGG | - | chr3_1:74031695-74031714 | None:intergenic | 35.0% | |
| CAATTGAACCAGGTATTTCA+GGG | - | chr3_1:74031696-74031715 | None:intergenic | 35.0% | |
| ACAATTGAACCAGGTATTTC+AGG | - | chr3_1:74031697-74031716 | None:intergenic | 35.0% | |
| ! | GAGGTATTTACAATTGAACC+AGG | - | chr3_1:74031706-74031725 | None:intergenic | 35.0% |
| ! | AGTACGGTACCCAATGTTTT+CGG | + | chr3_1:74026710-74026729 | Msa0374570:five_prime_UTR | 40.0% |
| CGGTTGTAATCCGAAAACAT+TGG | - | chr3_1:74026723-74026742 | None:intergenic | 40.0% | |
| CCATGAGTGAAAGGAAATTG+AGG | - | chr3_1:74026889-74026908 | None:intergenic | 40.0% | |
| CCTCAATTTCCTTTCACTCA+TGG | + | chr3_1:74026886-74026905 | Msa0374570:exon | 40.0% | |
| ! | GAATATTCAGCTGAAAGCAC+CGG | - | chr3_1:74027116-74027135 | None:intergenic | 40.0% |
| AACAATGAGCTGAAAGCCTA+TGG | - | chr3_1:74027231-74027250 | None:intergenic | 40.0% | |
| ! | AAACCGATTCCAACTCAGAA+GGG | - | chr3_1:74027417-74027436 | None:intergenic | 40.0% |
| ! | AAAACCGATTCCAACTCAGA+AGG | - | chr3_1:74027418-74027437 | None:intergenic | 40.0% |
| ! | GTACATGAGCTATCTGAAGT+AGG | - | chr3_1:74027825-74027844 | None:intergenic | 40.0% |
| CTCAAATCCGTTAGAACCAA+CGG | - | chr3_1:74028019-74028038 | None:intergenic | 40.0% | |
| TCGAATGACTCCATATGACA+TGG | + | chr3_1:74028155-74028174 | Msa0374570:CDS | 40.0% | |
| CGAATGACTCCATATGACAT+GGG | + | chr3_1:74028156-74028175 | Msa0374570:CDS | 40.0% | |
| ATGCATTGCGCCAAAATACA+GGG | - | chr3_1:74028227-74028246 | None:intergenic | 40.0% | |
| !!! | GGCTTTTTTATGAAGCTCTC+TGG | + | chr3_1:74028329-74028348 | Msa0374570:intron | 40.0% |
| !! | TTTTATGAAGCTCTCTGGAG+CGG | + | chr3_1:74028334-74028353 | Msa0374570:intron | 40.0% |
| TTCTTGCCCCTCATATTGAT+TGG | + | chr3_1:74028475-74028494 | Msa0374570:intron | 40.0% | |
| TGCATAAAGACCTATGATGC+AGG | - | chr3_1:74028735-74028754 | None:intergenic | 40.0% | |
| AATCACTAATCCAGTTCACG+TGG | + | chr3_1:74028796-74028815 | Msa0374570:CDS | 40.0% | |
| ! | GGGTGTTACACACTTTATAG+AGG | - | chr3_1:74029299-74029318 | None:intergenic | 40.0% |
| !! | TGTAACACCCAAGAGTGTTT+GGG | + | chr3_1:74029309-74029328 | Msa0374570:intron | 40.0% |
| CTGTGACTGACTAATTAAGC+AGG | - | chr3_1:74029371-74029390 | None:intergenic | 40.0% | |
| GTGCCCCTCAACAATTATAA+TGG | - | chr3_1:74029433-74029452 | None:intergenic | 40.0% | |
| ! | TTATAATTGTTGAGGGGCAC+TGG | + | chr3_1:74029433-74029452 | Msa0374570:intron | 40.0% |
| ATGGAATTCCTCCATCTATG+AGG | - | chr3_1:74029522-74029541 | None:intergenic | 40.0% | |
| ACTCATCTATTCCTTGTGTG+TGG | + | chr3_1:74029589-74029608 | Msa0374570:intron | 40.0% | |
| AAGAGGAACCAGATAGCATA+TGG | - | chr3_1:74029642-74029661 | None:intergenic | 40.0% | |
| TATGTTTACCGATGGCAAAG+AGG | - | chr3_1:74029659-74029678 | None:intergenic | 40.0% | |
| TAACAGACCTGCAGAATATG+GGG | - | chr3_1:74029896-74029915 | None:intergenic | 40.0% | |
| TTCTGCAGGTCTGTTATTAC+CGG | + | chr3_1:74029900-74029919 | Msa0374570:intron | 40.0% | |
| TCCCAGATGGAAAAAATCTC+AGG | - | chr3_1:74029928-74029947 | None:intergenic | 40.0% | |
| ! | ACCAAAGACAGAGTCTGTTT+TGG | - | chr3_1:74030103-74030122 | None:intergenic | 40.0% |
| AAAACAGACTCTGTCTTTGG+TGG | + | chr3_1:74030102-74030121 | Msa0374570:CDS | 40.0% | |
| CTACACATTGACAGATGACA+AGG | + | chr3_1:74030128-74030147 | Msa0374570:CDS | 40.0% | |
| ATGCGTATCCTCAAAACAGT+AGG | - | chr3_1:74030318-74030337 | None:intergenic | 40.0% | |
| TATTCCCTATCTGGTTAGGT+TGG | + | chr3_1:74030418-74030437 | Msa0374570:intron | 40.0% | |
| CAAATCCAACCTAACCAGAT+AGG | - | chr3_1:74030426-74030445 | None:intergenic | 40.0% | |
| GTTGTGATATAACATAGCCC+TGG | - | chr3_1:74030719-74030738 | None:intergenic | 40.0% | |
| TTGACACGTTTGTGATTCTC+TGG | - | chr3_1:74031102-74031121 | None:intergenic | 40.0% | |
| TCCATGTGGTATAGGTTAAG+AGG | + | chr3_1:74031163-74031182 | Msa0374570:intron | 40.0% | |
| TCCTCTTAACCTATACCACA+TGG | - | chr3_1:74031167-74031186 | None:intergenic | 40.0% | |
| AGGTTAAGAGGAACAACTAC+AGG | + | chr3_1:74031175-74031194 | Msa0374570:intron | 40.0% | |
| GGTTAAGAGGAACAACTACA+GGG | + | chr3_1:74031176-74031195 | Msa0374570:intron | 40.0% | |
| GTTAAGAGGAACAACTACAG+GGG | + | chr3_1:74031177-74031196 | Msa0374570:CDS | 40.0% | |
| TTGATCTCACTTGTCACTAG+TGG | + | chr3_1:74031217-74031236 | Msa0374570:CDS | 40.0% | |
| ACATCTGAAGAGGACATTCT+TGG | + | chr3_1:74031262-74031281 | Msa0374570:CDS | 40.0% | |
| TGTCTTTGTTCCATTTGAGG+AGG | + | chr3_1:74031366-74031385 | Msa0374570:CDS | 40.0% | |
| ! | ATCTCTTTTGAATTTGCCCG+TGG | + | chr3_1:74031634-74031653 | Msa0374570:CDS | 40.0% |
| ! | GTTTTCGGATTACAACCGTG+TGG | + | chr3_1:74026725-74026744 | Msa0374570:five_prime_UTR | 45.0% |
| AACGTTAGACACCAGAGGTT+TGG | - | chr3_1:74026784-74026803 | None:intergenic | 45.0% | |
| GTATCAACGTTAGACACCAG+AGG | - | chr3_1:74026789-74026808 | None:intergenic | 45.0% | |
| GACACACTTCGACATCAAAC+AGG | - | chr3_1:74027359-74027378 | None:intergenic | 45.0% | |
| TTTAACGGTCCCTTCTGAGT+TGG | + | chr3_1:74027405-74027424 | Msa0374570:CDS | 45.0% | |
| !! | CTGAGTTGGAATCGGTTTTG+AGG | + | chr3_1:74027419-74027438 | Msa0374570:CDS | 45.0% |
| ACTTTGTTACAAGGAGGCCA+TGG | + | chr3_1:74027458-74027477 | Msa0374570:CDS | 45.0% | |
| !! | GTGGGACTAGTTACAATGTG+CGG | + | chr3_1:74027770-74027789 | Msa0374570:intron | 45.0% |
| !! | TGGGACTAGTTACAATGTGC+GGG | + | chr3_1:74027771-74027790 | Msa0374570:intron | 45.0% |
| !! | AGTATTTGGTGCATCACCGT+TGG | + | chr3_1:74028000-74028019 | Msa0374570:intron | 45.0% |
| !! | TGCATCACCGTTGGTTCTAA+CGG | + | chr3_1:74028009-74028028 | Msa0374570:intron | 45.0% |
| ! | GAGGCTTTTCCCATGTCATA+TGG | - | chr3_1:74028168-74028187 | None:intergenic | 45.0% |
| ! | CCATTTTCGACACACACAAG+AGG | - | chr3_1:74028187-74028206 | None:intergenic | 45.0% |
| CCTCTTGTGTGTGTCGAAAA+TGG | + | chr3_1:74028184-74028203 | Msa0374570:CDS | 45.0% | |
| CTTGTGTGTGTCGAAAATGG+CGG | + | chr3_1:74028187-74028206 | Msa0374570:CDS | 45.0% | |
| CATGCATTGCGCCAAAATAC+AGG | - | chr3_1:74028228-74028247 | None:intergenic | 45.0% | |
| CAAAATACGATGGCTCATGG+CGG | + | chr3_1:74028381-74028400 | Msa0374570:CDS | 45.0% | |
| TTACCGTCAAATCGCAACCT+TGG | - | chr3_1:74028425-74028444 | None:intergenic | 45.0% | |
| GGGTCACCAATCAATATGAG+GGG | - | chr3_1:74028484-74028503 | None:intergenic | 45.0% | |
| CGGGTCACCAATCAATATGA+GGG | - | chr3_1:74028485-74028504 | None:intergenic | 45.0% | |
| ACGGGTCACCAATCAATATG+AGG | - | chr3_1:74028486-74028505 | None:intergenic | 45.0% | |
| ! | TATTGATTGGTGACCCGTGA+TGG | + | chr3_1:74028488-74028507 | Msa0374570:intron | 45.0% |
| !! | TTAGTCTTGTGCAGTGGAGA+GGG | - | chr3_1:74028601-74028620 | None:intergenic | 45.0% |
| !! | TTTAGTCTTGTGCAGTGGAG+AGG | - | chr3_1:74028602-74028621 | None:intergenic | 45.0% |
| AGAAATACCTACATCCGGGT+TGG | + | chr3_1:74028758-74028777 | Msa0374570:CDS | 45.0% | |
| TGAATGCATACCACGTGAAC+TGG | - | chr3_1:74028809-74028828 | None:intergenic | 45.0% | |
| !! | GTGTAACACCCAAGAGTGTT+TGG | + | chr3_1:74029308-74029327 | Msa0374570:intron | 45.0% |
| TGACATGCCCAAACACTCTT+GGG | - | chr3_1:74029319-74029338 | None:intergenic | 45.0% | |
| TTGACATGCCCAAACACTCT+TGG | - | chr3_1:74029320-74029339 | None:intergenic | 45.0% | |
| CTATTCCTTGTGTGTGGTGT+TGG | + | chr3_1:74029595-74029614 | Msa0374570:intron | 45.0% | |
| ATCAACCAACACCACACACA+AGG | - | chr3_1:74029603-74029622 | None:intergenic | 45.0% | |
| ! | ATCTGGTTCCTCTTTGCCAT+CGG | + | chr3_1:74029648-74029667 | Msa0374570:intron | 45.0% |
| AATTTCCCCCCATATTCTGC+AGG | + | chr3_1:74029886-74029905 | Msa0374570:intron | 45.0% | |
| AACAGACCTGCAGAATATGG+GGG | - | chr3_1:74029895-74029914 | None:intergenic | 45.0% | |
| GCCAAAACAGACTCTGTCTT+TGG | + | chr3_1:74030099-74030118 | Msa0374570:CDS | 45.0% | |
| !!! | CTGTTTTGAGGATACGCATG+AGG | + | chr3_1:74030319-74030338 | Msa0374570:CDS | 45.0% |
| TGAGGATACGCATGAGGTAA+TGG | + | chr3_1:74030325-74030344 | Msa0374570:intron | 45.0% | |
| TCTCTTAGCAGAGGACATAC+TGG | - | chr3_1:74030454-74030473 | None:intergenic | 45.0% | |
| TAACATAGCCCTGGTAGATG+AGG | - | chr3_1:74030710-74030729 | None:intergenic | 45.0% | |
| CAACTACAGGGGCTAACAAT+AGG | + | chr3_1:74031188-74031207 | Msa0374570:CDS | 45.0% | |
| TACAGGGGCTAACAATAGGA+TGG | + | chr3_1:74031192-74031211 | Msa0374570:CDS | 45.0% | |
| TAGTGGTGTGGACACTAATG+AGG | + | chr3_1:74031234-74031253 | Msa0374570:CDS | 45.0% | |
| TGAGGCAAGTACATCTGAAG+AGG | + | chr3_1:74031252-74031271 | Msa0374570:CDS | 45.0% | |
| GACATTCTTGGAGTCGTTGA+AGG | + | chr3_1:74031274-74031293 | Msa0374570:CDS | 45.0% | |
| TTCTTGGAGTCGTTGAAGGA+TGG | + | chr3_1:74031278-74031297 | Msa0374570:CDS | 45.0% | |
| GAATTTGCCCGTGGAGAAAA+TGG | + | chr3_1:74031643-74031662 | Msa0374570:CDS | 45.0% | |
| AATGATGCCCCTGAAATACC+TGG | + | chr3_1:74031685-74031704 | Msa0374570:exon | 45.0% | |
| AATTTGCGTACTTGCATGCG+TGG | + | chr3_1:74031750-74031769 | Msa0374570:three_prime_UTR | 45.0% | |
| TCTGACATGCACATGCCACA+CGG | - | chr3_1:74026743-74026762 | None:intergenic | 50.0% | |
| ATTCCGCGAAACCAAACCTC+TGG | + | chr3_1:74026770-74026789 | Msa0374570:five_prime_UTR | 50.0% | |
| ! | ACACCAGAGGTTTGGTTTCG+CGG | - | chr3_1:74026776-74026795 | None:intergenic | 50.0% |
| TTCCTTTCACTCATGGCGTC+AGG | + | chr3_1:74026893-74026912 | Msa0374570:exon | 50.0% | |
| AACCTGACGCCATGAGTGAA+AGG | - | chr3_1:74026898-74026917 | None:intergenic | 50.0% | |
| ! | GGTCCCTTCTGAGTTGGAAT+CGG | + | chr3_1:74027411-74027430 | Msa0374570:CDS | 50.0% |
| GCGTTGTACATACCAAGCCA+TGG | - | chr3_1:74027478-74027497 | None:intergenic | 50.0% | |
| ACCAGATGAGCTGCTCTTTG+AGG | + | chr3_1:74027687-74027706 | Msa0374570:CDS | 50.0% | |
| ACCTCAAAGAGCAGCTCATC+TGG | - | chr3_1:74027691-74027710 | None:intergenic | 50.0% | |
| TTGGCGCAATGCATGCTTGA+AGG | + | chr3_1:74028233-74028252 | Msa0374570:CDS | 50.0% | |
| TGGCGCAATGCATGCTTGAA+GGG | + | chr3_1:74028234-74028253 | Msa0374570:CDS | 50.0% | |
| GCAATGCATGCTTGAAGGGT+TGG | + | chr3_1:74028238-74028257 | Msa0374570:CDS | 50.0% | |
| TTGGCAGGTAAGGTCAATGG+AGG | + | chr3_1:74028257-74028276 | Msa0374570:intron | 50.0% | |
| ! | ATGGCTCATGGCGGAAAATG+TGG | + | chr3_1:74028390-74028409 | Msa0374570:CDS | 50.0% |
| GGCGGAAAATGTGGCTCTTA+CGG | + | chr3_1:74028399-74028418 | Msa0374570:CDS | 50.0% | |
| AAATGTGGCTCTTACGGCCA+AGG | + | chr3_1:74028405-74028424 | Msa0374570:CDS | 50.0% | |
| TGCTCTTCCCTGCAGAGTAT+AGG | + | chr3_1:74029254-74029273 | Msa0374570:intron | 50.0% | |
| ! | ACACCTTCTGATGAAGGTGC+TGG | - | chr3_1:74029564-74029583 | None:intergenic | 50.0% |
| !! | GTGTGTGGTGTTGGTTGATC+CGG | + | chr3_1:74029604-74029623 | Msa0374570:intron | 50.0% |
| !! | GTGTTGGTTGATCCGGATAG+TGG | + | chr3_1:74029611-74029630 | Msa0374570:intron | 50.0% |
| ACAGACCTGCAGAATATGGG+GGG | - | chr3_1:74029894-74029913 | None:intergenic | 50.0% | |
| AAAACAGTAGGTCGCATGCC+TGG | - | chr3_1:74030306-74030325 | None:intergenic | 50.0% | |
| ! | GCATGCGACCTACTGTTTTG+AGG | + | chr3_1:74030307-74030326 | Msa0374570:CDS | 50.0% |
| CTCACTTGTCACTAGTGGTG+TGG | + | chr3_1:74031222-74031241 | Msa0374570:CDS | 50.0% | |
| ATGTGAGACTGCTGGCACAT+CGG | - | chr3_1:74031326-74031345 | None:intergenic | 50.0% | |
| TGCCAGCAGTCTCACATAAG+AGG | + | chr3_1:74031329-74031348 | Msa0374570:CDS | 50.0% | |
| GCCAGCAGTCTCACATAAGA+GGG | + | chr3_1:74031330-74031349 | Msa0374570:CDS | 50.0% | |
| CCAGCAGTCTCACATAAGAG+GGG | + | chr3_1:74031331-74031350 | Msa0374570:CDS | 50.0% | |
| !! | TTCAGGGGCATCATTCAACC+AGG | - | chr3_1:74031680-74031699 | None:intergenic | 50.0% |
| TCACTCATGGCGTCAGGTTC+AGG | + | chr3_1:74026899-74026918 | Msa0374570:exon | 55.0% | |
| ! | GAAGAAGGTGCGGATCGAAG+TGG | - | chr3_1:74026945-74026964 | None:intergenic | 55.0% |
| GTTACAAGGAGGCCATGGCT+TGG | + | chr3_1:74027463-74027482 | Msa0374570:CDS | 55.0% | |
| ! | TGCATGCTTGAAGGGTTGGC+AGG | + | chr3_1:74028242-74028261 | Msa0374570:CDS | 55.0% |
| ! | GCTTGAAGGGTTGGCAGGTA+AGG | + | chr3_1:74028247-74028266 | Msa0374570:intron | 55.0% |
| ! | GGGTTGGCAGGTAAGGTCAA+TGG | + | chr3_1:74028254-74028273 | Msa0374570:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | + | chr3_1:74028419-74028438 | Msa0374570:CDS | 55.0% | |
| TGCAACTCCAACCCGGATGT+AGG | - | chr3_1:74028768-74028787 | None:intergenic | 55.0% | |
| TCCACTCTGCAACTCCAACC+CGG | - | chr3_1:74028775-74028794 | None:intergenic | 55.0% | |
| !! | CTTCTGATGAAGGTGCTGGC+TGG | - | chr3_1:74029560-74029579 | None:intergenic | 55.0% |
| CAGCCAGCACCTTCATCAGA+AGG | + | chr3_1:74029558-74029577 | Msa0374570:intron | 55.0% | |
| GAAGCTGCTGTCCTGTATCC+AGG | + | chr3_1:74030285-74030304 | Msa0374570:CDS | 55.0% | |
| TAGGTCGCATGCCTGGATAC+AGG | - | chr3_1:74030299-74030318 | None:intergenic | 55.0% | |
| TGGAGTCGTTGAAGGATGGC+AGG | + | chr3_1:74031282-74031301 | Msa0374570:CDS | 55.0% | |
| TGTGAGACTGCTGGCACATC+GGG | - | chr3_1:74031325-74031344 | None:intergenic | 55.0% | |
| CCCCTCTTATGTGAGACTGC+TGG | - | chr3_1:74031334-74031353 | None:intergenic | 55.0% | |
| ! | GTGAGACCTGTCGCGCCTTT+TGG | + | chr3_1:74027613-74027632 | Msa0374570:CDS | 60.0% |
| ! | GCACTTCCAAAAGGCGCGAC+AGG | - | chr3_1:74027622-74027641 | None:intergenic | 60.0% |
| ! | TCCGGGTTGGAGTTGCAGAG+TGG | + | chr3_1:74028771-74028790 | Msa0374570:CDS | 60.0% |
| GTGAGACTGCTGGCACATCG+GGG | - | chr3_1:74031324-74031343 | None:intergenic | 60.0% | |
| GTGCGGATCGAAGTGGCGAG+AGG | - | chr3_1:74026938-74026957 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74026702 | 74032028 | 74026702 | ID=Msa0374570;Name=Msa0374570 |
| chr3_1 | mRNA | 74026702 | 74032028 | 74026702 | ID=Msa0374570-mRNA-1;Parent=Msa0374570;Name=Msa0374570-mRNA-1;_AED=0.22;_eAED=0.22;_QI=203|1|1|1|1|1|11|343|329 |
| chr3_1 | exon | 74026702 | 74026920 | 74026702 | ID=Msa0374570-mRNA-1:exon:17045;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74027398 | 74027484 | 74027398 | ID=Msa0374570-mRNA-1:exon:17046;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74027596 | 74027708 | 74027596 | ID=Msa0374570-mRNA-1:exon:17047;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74028147 | 74028263 | 74028147 | ID=Msa0374570-mRNA-1:exon:17048;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74028344 | 74028440 | 74028344 | ID=Msa0374570-mRNA-1:exon:17049;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74028744 | 74028817 | 74028744 | ID=Msa0374570-mRNA-1:exon:17050;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74029908 | 74029961 | 74029908 | ID=Msa0374570-mRNA-1:exon:17051;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74030048 | 74030149 | 74030048 | ID=Msa0374570-mRNA-1:exon:17052;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74030282 | 74030340 | 74030282 | ID=Msa0374570-mRNA-1:exon:17053;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74031177 | 74031387 | 74031177 | ID=Msa0374570-mRNA-1:exon:17054;Parent=Msa0374570-mRNA-1 |
| chr3_1 | exon | 74031626 | 74032028 | 74031626 | ID=Msa0374570-mRNA-1:exon:17055;Parent=Msa0374570-mRNA-1 |
| chr3_1 | five_prime_UTR | 74026702 | 74026904 | 74026702 | ID=Msa0374570-mRNA-1:five_prime_utr;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74026905 | 74026920 | 74026905 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74027398 | 74027484 | 74027398 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74027596 | 74027708 | 74027596 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74028147 | 74028263 | 74028147 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74028344 | 74028440 | 74028344 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74028744 | 74028817 | 74028744 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74029908 | 74029961 | 74029908 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74030048 | 74030149 | 74030048 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74030282 | 74030340 | 74030282 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74031177 | 74031387 | 74031177 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | CDS | 74031626 | 74031685 | 74031626 | ID=Msa0374570-mRNA-1:cds;Parent=Msa0374570-mRNA-1 |
| chr3_1 | three_prime_UTR | 74031686 | 74032028 | 74031686 | ID=Msa0374570-mRNA-1:three_prime_utr;Parent=Msa0374570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
