AlfalfaGEDB | Msa1384130

M. sativa cultivar zhongmu-4 / Msa1384130

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384130	GAU49928.1	93.035	201	14	0	1	201	1	201	1.06e-133	383

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384130	sp\|C6TG62\|CSPL9_SOYBN	69.744	195	58	1	1	195	1	194	1.33e-98	286

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384130	A0A2Z6P0I7	93.035	201	14	0	1	201	1	201	5.04e-134	383

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004900	Msa1384130	0.800635	1.313990e-48	-8.615850e-47
Msa0004940	Msa1384130	0.831755	1.394224e-55	-8.615850e-47
Msa0004990	Msa1384130	0.829601	4.699408e-55	-8.615850e-47
Msa0011010	Msa1384130	0.828746	7.572358e-55	-8.615850e-47
Msa0011040	Msa1384130	0.821157	4.687140e-53	-8.615850e-47
Msa0011490	Msa1384130	0.821577	3.749404e-53	-8.615850e-47
Msa0013270	Msa1384130	0.844857	5.829078e-59	-8.615850e-47
Msa0015950	Msa1384130	0.813395	2.615586e-51	-8.615850e-47
Msa0016070	Msa1384130	0.806997	6.268551e-50	-8.615850e-47
Msa0016080	Msa1384130	0.823207	1.568066e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384130	MtrunA17_Chr2g0303151	95.522	201	9	0	1	201	1	201	3.37e-133	371
Msa1384130	MtrunA17_Chr8g0381001	74.227	194	49	1	1	194	1	193	1.05e-95	276
Msa1384130	MtrunA17_Chr4g0066721	36.301	146	87	3	29	171	35	177	3.71e-22	89.4
Msa1384130	MtrunA17_Chr7g0268681	33.333	174	109	4	17	189	18	185	1.72e-21	87.4
Msa1384130	MtrunA17_Chr4g0021111	32.927	164	94	2	29	192	10	157	5.06e-21	85.5
Msa1384130	MtrunA17_Chr2g0286341	28.659	164	106	3	31	189	27	184	8.75e-16	72.0
Msa1384130	MtrunA17_Chr7g0217691	27.419	186	122	3	6	188	10	185	1.08e-13	66.6
Msa1384130	MtrunA17_Chr4g0042551	26.452	155	107	1	31	185	63	210	1.38e-11	61.2
Msa1384130	MtrunA17_Chr5g0417761	29.677	155	102	1	31	185	32	179	2.09e-11	60.5
Msa1384130	MtrunA17_Chr2g0321671	29.268	123	71	2	71	185	99	213	6.16e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384130	AT5G44550.1	58.140	172	72	0	23	194	14	185	4.60e-66	202
Msa1384130	AT4G20390.1	55.294	170	75	1	22	190	12	181	3.81e-53	169
Msa1384130	AT4G15620.1	29.570	186	124	4	5	189	10	189	3.12e-18	79.0
Msa1384130	AT4G15630.1	28.022	182	125	3	9	189	13	189	1.87e-17	77.0
Msa1384130	AT4G15610.1	31.250	144	92	3	31	172	33	171	7.46e-17	75.5
Msa1384130	AT1G03700.1	27.439	164	103	3	29	192	11	158	1.16e-16	74.3
Msa1384130	AT1G14160.1	28.302	159	99	2	31	185	55	202	2.58e-15	71.6
Msa1384130	AT5G15290.1	31.469	143	89	3	31	172	32	166	4.62e-15	70.5
Msa1384130	AT3G06390.1	30.597	134	83	4	32	161	42	169	4.19e-14	68.2
Msa1384130	AT4G03540.1	28.244	131	78	3	44	174	26	140	9.63e-13	63.9

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Find 42 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTAGTCTCCATAACT+TGG	0.496794	tig0020634:+116106	Msa1384130:CDS
AAGTCCTTTGTAATCATATT+GGG	0.274380	tig0020634:-116156	None:intergenic
ACTATGGCTCTGGCATCAGC+TGG	0.494373	tig0020634:+116322	Msa1384130:CDS
AGAAATAGTAGCAGTTATTG+GGG	0.633112	tig0020634:-115621	None:intergenic
AGCAACATTCATGTCAGCAT+TGG	0.488005	tig0020634:+116354	Msa1384130:CDS
AGCCAATGAAAGAAGCAATA+AGG	0.340360	tig0020634:-116456	None:intergenic
AGCTATTGCAATAGAGGTGG+TGG	0.598102	tig0020634:+116430	Msa1384130:CDS
AGCTGGAGTTTGATTAAATT+TGG	0.215698	tig0020634:-115645	None:intergenic
AGGCTTGAGAAGCTTGGCAA+TGG	0.561801	tig0020634:-116509	None:intergenic
AGGTTCTTTGTGATAGCCAA+TGG	0.529472	tig0020634:+116083	Msa1384130:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATAGTAGCAGTTATTG+GGG	-	tig0020634:115624-115643	None:intergenic	30.0%
CAGAAATAGTAGCAGTTATT+GGG	-	tig0020634:115625-115644	None:intergenic	30.0%
AGCTGGAGTTTGATTAAATT+TGG	-	tig0020634:115648-115667	None:intergenic	30.0%
TTGAAAACTTACACAAAAGC+TGG	-	tig0020634:115665-115684	None:intergenic	30.0%
TGTAAGAGGAAAATAGAGAA+AGG	+	tig0020634:115912-115931	Msa1384130:intron	30.0%
TACATTAACACATCATTGTG+GGG	+	tig0020634:116054-116073	Msa1384130:intron	30.0%
AGTCCTTTGTAATCATATTG+GGG	-	tig0020634:116158-116177	None:intergenic	30.0%
GAAGTCCTTTGTAATCATAT+TGG	-	tig0020634:116160-116179	None:intergenic	30.0%
TTTGAAAGCTATTGCAATAG+AGG	+	tig0020634:116424-116443	Msa1384130:CDS	30.0%
AGAAATAGTAGCAGTTATTG+GGG	-	tig0020634:115624-115643	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020634	gene	115434	116561	115434	ID=Msa1384130;Name=Msa1384130
tig0020634	mRNA	115434	116561	115434	ID=Msa1384130-mRNA-1;Parent=Msa1384130;Name=Msa1384130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|201
tig0020634	exon	115434	115672	115434	ID=Msa1384130-mRNA-1:exon:8936;Parent=Msa1384130-mRNA-1
tig0020634	exon	116085	116208	116085	ID=Msa1384130-mRNA-1:exon:8937;Parent=Msa1384130-mRNA-1
tig0020634	exon	116319	116561	116319	ID=Msa1384130-mRNA-1:exon:8938;Parent=Msa1384130-mRNA-1
tig0020634	CDS	115434	115672	115434	ID=Msa1384130-mRNA-1:cds;Parent=Msa1384130-mRNA-1
tig0020634	CDS	116085	116208	116085	ID=Msa1384130-mRNA-1:cds;Parent=Msa1384130-mRNA-1
tig0020634	CDS	116319	116561	116319	ID=Msa1384130-mRNA-1:cds;Parent=Msa1384130-mRNA-1

Gene Sequence

>Msa1384130

ATGGCTTCAAGAAATGGTGAAGAGAAAGTTGAACGTGGCTTCAATGATGTTCATGAAAGAAAAACAAAGAATGATTGGATTCTTTTATCTCTTAGGGTTGTTGCATTTTTTGCCACTGCAGCTGCAACACTTGTAATGGCACTCAACAAACAGACCAAAAGTTTTGTTATTGGCACCGCTGGTAACACCCCAATAACTGCTACTATTTCTGCCAAATTTAATCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCTAGTCTCCATAACTTGGTGATGATTGCATTGGATATATTAGGACCCCAATATGATTACAAAGGACTTCGCCTTGCATTTATTGCAATTTTAGACATGTTAACTATGGCTCTGGCATCAGCTGGAGATGGTGCAGCAACATTCATGTCAGCATTGGGAAGAAATGGTAATTCACATGCAAGATGGGATAAGATTTGTGACAAATTTGAAAGCTATTGCAATAGAGGTGGTGGTGCCCTTATTGCTTCTTTCATTGGCTTCATTCTTCTCTTGATTATCACTGTGATGTCCATTGCCAAGCTTCTCAAGCCTAATCGCATTAACCATGCTCCCAGTCCTTGA

Protein sequence

>Msa1384130

MASRNGEEKVERGFNDVHERKTKNDWILLSLRVVAFFATAAATLVMALNKQTKSFVIGTAGNTPITATISAKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLAFIAILDMLTMALASAGDGAATFMSALGRNGNSHARWDKICDKFESYCNRGGGALIASFIGFILLLIITVMSIAKLLKPNRINHAPSP*