AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352600 MtrunA17_Chr7g0272191 87.926 323 6 3 1 291 1 322 0.0 563
Msa1352600 MtrunA17_Chr1g0207341 46.746 169 83 3 105 272 153 315 4.23e-44 154
Msa1352600 MtrunA17_Chr4g0055551 46.667 180 89 3 93 272 90 262 3.12e-34 126
Msa1352600 MtrunA17_Chr4g0038261 40.397 151 79 2 107 257 45 184 2.68e-26 103
Msa1352600 MtrunA17_Chr7g0251451 33.889 180 100 4 101 280 73 233 3.76e-24 99.4
Msa1352600 MtrunA17_Chr5g0409311 31.325 166 99 3 107 272 88 238 2.61e-21 91.3
Msa1352600 MtrunA17_Chr4g0034751 35.152 165 96 3 107 271 99 252 4.66e-21 90.5
Msa1352600 MtrunA17_Chr7g0270061 32.099 162 95 3 110 271 111 257 1.95e-19 86.3
Msa1352600 MtrunA17_Chr1g0194601 30.435 184 105 5 94 271 94 260 4.43e-18 82.4
Msa1352600 MtrunA17_Chr4g0056771 32.738 168 94 5 107 272 95 245 1.42e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352600 AT1G09130.2 60.909 330 82 8 1 286 1 327 8.35e-131 375
Msa1352600 AT1G09130.1 60.909 330 82 8 1 286 1 327 8.35e-131 375
Msa1352600 AT1G09130.3 60.725 331 82 9 1 285 1 329 1.45e-130 375
Msa1352600 AT1G49970.1 46.857 175 86 3 99 272 163 331 1.82e-44 155
Msa1352600 AT4G17040.1 45.556 180 91 3 93 272 91 263 6.83e-44 152
Msa1352600 AT5G23140.1 39.073 151 81 2 107 257 48 187 5.17e-26 103
Msa1352600 AT5G45390.1 32.778 180 106 3 93 272 65 229 3.08e-24 99.8
Msa1352600 AT1G66670.1 29.921 254 136 7 49 280 6 239 8.06e-23 96.3
Msa1352600 AT1G11750.2 30.508 236 142 5 43 271 47 267 1.34e-21 92.4
Msa1352600 AT1G02560.1 32.609 184 101 5 94 271 97 263 4.12e-21 91.3
Msa1352600 AT1G11750.1 34.132 167 99 3 105 271 94 249 4.17e-21 90.9
Msa1352600 AT1G12410.1 31.250 176 101 6 107 280 89 246 2.30e-15 75.1
Msa1352600 ATCG00670.1 25.595 168 111 4 107 272 22 177 2.13e-13 68.2

Find 149 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGGTTGAAAGGAATTT+TGG 0.200171 tig0012622:-14512 Msa1352600:intergenic
AAACCTCCAACACTGGTATT+AGG 0.214162 tig0012622:-19616 Msa1352600:intergenic
TTGTAGATAAAGTGTAAAAT+AGG 0.214774 tig0012622:+19212 Msa1352600:three_prime_UTR
TAAATATATATTGGTTCTTT+AGG 0.217872 tig0012622:-15354 Msa1352600:intergenic
TTTGCATATGCTTAGATTAT+AGG 0.220477 tig0012622:-19961 Msa1352600:intergenic
AGCAGCGACAGAAGCGAGTT+TGG 0.261043 tig0012622:-14548 Msa1352600:intergenic
ATTGACTAGATGTGCCAAAA+TGG 0.271930 tig0012622:-19357 Msa1352600:intergenic
GAAGGGTTAAGAAGTGTTTC+GGG 0.274893 tig0012622:-14577 Msa1352600:intergenic
GAAACCAAAAGTACATTTAA+AGG 0.283330 tig0012622:-19167 Msa1352600:intergenic
CAGCCTCGTGTTCCATCGTC+TGG 0.284212 tig0012622:+16551 Msa1352600:CDS
AGATGAAGCGGGCATGGATA+TGG 0.284858 tig0012622:-14428 Msa1352600:intergenic
CTGCATCATTGCATCATAAA+TGG 0.285811 tig0012622:-15550 Msa1352600:intergenic
CAGGTCAGGAGGTGGTCTTT+TGG 0.291985 tig0012622:-14910 Msa1352600:intergenic
AAGTTTGAGATAACCCATTT+TGG 0.295974 tig0012622:+19343 Msa1352600:three_prime_UTR
CCTTCCCGCTTTAAATAATC+TGG 0.304365 tig0012622:+19319 Msa1352600:three_prime_UTR
AACACTGTTCTCAGATTCTT+TGG 0.305404 tig0012622:+18669 Msa1352600:intron
AGTACCTTTAAATGTACTTT+TGG 0.334249 tig0012622:+19163 Msa1352600:three_prime_UTR
GCGTGGCCAGGAGAAGATTA+TGG 0.338584 tig0012622:+18691 Msa1352600:CDS
AGAGTTCTCAATCTTCTTGT+TGG 0.343709 tig0012622:-14463 Msa1352600:intergenic
GCTTGATATCCTTGTCTACT+TGG 0.344292 tig0012622:+19450 Msa1352600:three_prime_UTR
TTGGAGAGAAATGGGTCGTT+AGG 0.357290 tig0012622:-14529 Msa1352600:intergenic
GGATTTGGCTATTGCGTTAA+CGG 0.359341 tig0012622:-14491 Msa1352600:intergenic
AACCTCCAACACTGGTATTA+GGG 0.361530 tig0012622:-19615 Msa1352600:intergenic
AGAAGGGTTAAGAAGTGTTT+CGG 0.362390 tig0012622:-14578 Msa1352600:intergenic
GAATTGATGTAAATATATAT+TGG 0.368323 tig0012622:-15363 Msa1352600:intergenic
CCATGCGGTCATATAGTGTT+TGG 0.369285 tig0012622:+19795 Msa1352600:three_prime_UTR
GCTCCCCTGGGAATAAATTC+TGG 0.379355 tig0012622:+19002 Msa1352600:three_prime_UTR
ATTGCAGGTTACAAACGTTC+TGG 0.379363 tig0012622:+19591 Msa1352600:three_prime_UTR
ATTCTGGAGATTGCAGTATA+TGG 0.381159 tig0012622:+19018 Msa1352600:three_prime_UTR
TCAAGCCTGTCTATTACTTT+CGG 0.388280 tig0012622:+16384 Msa1352600:CDS
AGCAGAAGCGATGGCAGGTC+AGG 0.391243 tig0012622:-14924 Msa1352600:intergenic
CGTTCCTTCTCGGGATGATC+GGG 0.398903 tig0012622:+18718 Msa1352600:CDS
TAGTTGTGTTGCTGCATTGC+AGG 0.402036 tig0012622:+19576 Msa1352600:three_prime_UTR
TGAAAGCTGTAGTGCATAGA+AGG 0.404696 tig0012622:+19734 Msa1352600:three_prime_UTR
AGGTTTAAATTATTCAGAAT+TGG 0.405643 tig0012622:-19065 Msa1352600:intergenic
GCAGTATATGGTGCAGTGTT+TGG 0.406699 tig0012622:+19030 Msa1352600:three_prime_UTR
CATTTGGTTCATACAGGAAC+TGG 0.408698 tig0012622:+19259 Msa1352600:three_prime_UTR
GCCTGTCTATTACTTTCGGC+AGG 0.410127 tig0012622:+16388 Msa1352600:CDS
TGAATAAGAACATCACTTGC+AGG 0.413533 tig0012622:-16581 Msa1352600:intergenic
GAGACATAATAAGCAACATT+TGG 0.416885 tig0012622:+19243 Msa1352600:three_prime_UTR
TATGGCAGACGTTCCTTCTC+GGG 0.420882 tig0012622:+18709 Msa1352600:CDS
GAAGCGAGTTTGGAGAGAAA+TGG 0.422524 tig0012622:-14538 Msa1352600:intergenic
CAGATAAACACAGTTGCTCT+TGG 0.426284 tig0012622:+16349 Msa1352600:intron
CACATCATCTATGTAGTTCA+TGG 0.433069 tig0012622:-18959 Msa1352600:intergenic
TCAGATTCTTTGGCGTGGCC+AGG 0.433756 tig0012622:+18679 Msa1352600:intron
GGCCCTAATACCAGTGTTGG+AGG 0.437142 tig0012622:+19613 Msa1352600:three_prime_UTR
TAAAGTGTAAAATAGGGATA+GGG 0.437378 tig0012622:+19219 Msa1352600:three_prime_UTR
TGTAGATAAAGTGTAAAATA+GGG 0.445387 tig0012622:+19213 Msa1352600:three_prime_UTR
TTATGGCAGACGTTCCTTCT+CGG 0.451725 tig0012622:+18708 Msa1352600:CDS
CGGGAGTGGCCATGAGTTGA+GGG 0.452837 tig0012622:-14642 Msa1352600:intergenic
TAAAAGCTCCTATGCTCCCC+TGG 0.453794 tig0012622:+18989 Msa1352600:three_prime_UTR
TCAGTTGGTGCCGGCTGTCA+CGG 0.455462 tig0012622:+15290 Msa1352600:intron
TTTGATGGATGGAGTGTAAA+GGG 0.458941 tig0012622:+18906 Msa1352600:intron
TCTCGGGATGATCGGGAAAA+CGG 0.462487 tig0012622:+18725 Msa1352600:CDS
CACACGACACTGAAAACTGC+TGG 0.462728 tig0012622:-14359 Msa1352600:intergenic
AGATTATCGGGAGAAGAAGA+AGG 0.463099 tig0012622:-14595 Msa1352600:intergenic
AAGCAACATTTGGTTCATAC+AGG 0.468224 tig0012622:+19253 Msa1352600:three_prime_UTR
TTACTTTCGGCAGGGACTAA+AGG 0.469894 tig0012622:+16397 Msa1352600:CDS
TAAACAGAAACCTCCAACAC+TGG 0.471633 tig0012622:-19623 Msa1352600:intergenic
GATGAAGCGGGCATGGATAT+GGG 0.472260 tig0012622:-14427 Msa1352600:intergenic
ACGTTCCTTCTCGGGATGAT+CGG 0.477175 tig0012622:+18717 Msa1352600:CDS
TTGGAATAACTTACTTGAGC+GGG 0.478936 tig0012622:-14661 Msa1352600:intergenic
TTGCAGGTTACAAACGTTCT+GGG 0.482608 tig0012622:+19592 Msa1352600:three_prime_UTR
TGGAGAGAAATGGGTCGTTA+GGG 0.483857 tig0012622:-14528 Msa1352600:intergenic
ATAAAGTGTAAAATAGGGAT+AGG 0.488433 tig0012622:+19218 Msa1352600:three_prime_UTR
TTCTACCTATCAGTTGGTGC+CGG 0.488819 tig0012622:+15281 Msa1352600:intron
GGACACTCTAGTTAAACTAT+TGG 0.489542 tig0012622:+18065 Msa1352600:CDS
ATAAATTTGACTAACCTCCT+TGG 0.490651 tig0012622:-16606 Msa1352600:intergenic
AAGCGAGTTTGGAGAGAAAT+GGG 0.491275 tig0012622:-14537 Msa1352600:intergenic
AAGAAGTTCAACACAGGAGT+TGG 0.493357 tig0012622:-19293 Msa1352600:intergenic
AAAGTGTAAAATAGGGATAG+GGG 0.500077 tig0012622:+19220 Msa1352600:three_prime_UTR
TTGACTAGATGTGCCAAAAT+GGG 0.500695 tig0012622:-19356 Msa1352600:intergenic
GACTAGGGTGTTCCAAGAAA+AGG 0.506806 tig0012622:-19424 Msa1352600:intergenic
CTTTAGGAGCCATCCACTGC+AGG 0.507394 tig0012622:-15338 Msa1352600:intergenic
AGGATATCAAGCTGTGACTA+GGG 0.508995 tig0012622:-19439 Msa1352600:intergenic
AACACGAGGCTGCTGAATCA+TGG 0.513570 tig0012622:-16540 Msa1352600:intergenic
TTTCGATTCCCCTCAACTCA+TGG 0.513737 tig0012622:+14633 Msa1352600:CDS
ATAACTTACTTGAGCGGGAG+TGG 0.516152 tig0012622:-14656 Msa1352600:intergenic
AAGGATATCAAGCTGTGACT+AGG 0.517609 tig0012622:-19440 Msa1352600:intergenic
GATCGGGAAAACGGTACTGC+TGG 0.517926 tig0012622:+18734 Msa1352600:CDS
CCCTGCCGAAAGTAATAGAC+AGG 0.518343 tig0012622:-16389 Msa1352600:intergenic
TATATTTACATCAATTCCAC+CGG 0.519889 tig0012622:+15369 Msa1352600:CDS
ATCTCCAGAATTTATTCCCA+GGG 0.524479 tig0012622:-19006 Msa1352600:intergenic
ATAATCTAAGCATATGCAAA+CGG 0.524917 tig0012622:+19964 Msa1352600:three_prime_UTR
ACGAGTAGATGAAGCGGGCA+TGG 0.525906 tig0012622:-14434 Msa1352600:intergenic
AGAAGCGATGGCAGGTCAGG+AGG 0.526440 tig0012622:-14921 Msa1352600:intergenic
ACCGGGACTACGCGGGCGGA+TGG 0.530411 tig0012622:+15387 Msa1352600:CDS
GTTGCTCTTGGAGCTGCTGT+AGG 0.531091 tig0012622:+16361 Msa1352600:CDS
AACGGTCGAATTGTTTACAT+TGG 0.533409 tig0012622:+14948 Msa1352600:CDS
GCTTATGTTCCTGCAGTGGA+TGG 0.533988 tig0012622:+15329 Msa1352600:CDS
ATTTATTCCCAGGGGAGCAT+AGG 0.534594 tig0012622:-18997 Msa1352600:intergenic
TACGCGGGCGGATGGAGAAA+CGG 0.537114 tig0012622:+15395 Msa1352600:CDS
CTTGCCAGATTATTTAAAGC+GGG 0.538136 tig0012622:-19323 Msa1352600:intergenic
TATATGACGCCACATGCAAA+AGG 0.539881 tig0012622:+16427 Msa1352600:CDS
GCGGGAGTGGCCATGAGTTG+AGG 0.542903 tig0012622:-14643 Msa1352600:intergenic
ACACGACACTGAAAACTGCT+GGG 0.543618 tig0012622:-14358 Msa1352600:intergenic
GCAATCAAATTTCATGCAGA+AGG 0.546251 tig0012622:-18930 Msa1352600:intergenic
GATTATCGGGAGAAGAAGAA+GGG 0.548240 tig0012622:-14594 Msa1352600:intergenic
CGTCTGCCATAATCTTCTCC+TGG 0.548423 tig0012622:-18697 Msa1352600:intergenic
CCAGATTATTTAAAGCGGGA+AGG 0.549093 tig0012622:-19319 Msa1352600:intergenic
AATGGGTCGTTAGGGTTGAA+AGG 0.550428 tig0012622:-14520 Msa1352600:intergenic
AGCCTCGTGTTCCATCGTCT+GGG 0.552354 tig0012622:+16552 Msa1352600:CDS
AATCTCCAGAATTTATTCCC+AGG 0.553970 tig0012622:-19007 Msa1352600:intergenic
CTGGGCCCTAATACCAGTGT+TGG 0.555779 tig0012622:+19610 Msa1352600:three_prime_UTR
TAAAGAATGTCGAGTGCAGT+AGG 0.560401 tig0012622:+19543 Msa1352600:three_prime_UTR
CTGCCATCGCTTCTGCTCAA+CGG 0.560428 tig0012622:+14930 Msa1352600:CDS
CGTTGAGCAGAAGCGATGGC+AGG 0.562450 tig0012622:-14929 Msa1352600:intergenic
TGATGTTCTTATTCATGCCA+AGG 0.567517 tig0012622:+16589 Msa1352600:CDS
GCTGTAGTGCATAGAAGGCA+TGG 0.570295 tig0012622:+19739 Msa1352600:three_prime_UTR
AGCGATGGCAGGTCAGGAGG+TGG 0.571658 tig0012622:-14918 Msa1352600:intergenic
CAATTCCACCGGGACTACGC+GGG 0.575076 tig0012622:+15380 Msa1352600:CDS
AAAAGCTCCTATGCTCCCCT+GGG 0.583619 tig0012622:+18990 Msa1352600:three_prime_UTR
TACTCGAAAGCATGTCGCCA+TGG 0.584471 tig0012622:-14404 Msa1352600:intergenic
ATAACAAGCTCCGTGACAGC+CGG 0.585297 tig0012622:-15300 Msa1352600:intergenic
GTGAAACGAGTAGATGAAGC+GGG 0.586595 tig0012622:-14439 Msa1352600:intergenic
TTCCACCGGGACTACGCGGG+CGG 0.591091 tig0012622:+15383 Msa1352600:CDS
CGACCGTTGAGCAGAAGCGA+TGG 0.597098 tig0012622:-14933 Msa1352600:intergenic
AGAAAACAATTGCATGTCAG+AGG 0.597912 tig0012622:-19501 Msa1352600:intergenic
GTCTGTTAACCAAGTAGACA+AGG 0.601739 tig0012622:-19459 Msa1352600:intergenic
CCTGTCTATTACTTTCGGCA+GGG 0.610388 tig0012622:+16389 Msa1352600:CDS
GTCAAGAAAGTTACCATGGG+AGG 0.611206 tig0012622:-19939 Msa1352600:intergenic
TGTTCTCAGATTCTTTGGCG+TGG 0.611853 tig0012622:+18674 Msa1352600:intron
ACTTGCCAGATTATTTAAAG+CGG 0.619120 tig0012622:-19324 Msa1352600:intergenic
AGGGTTAAGAAGTGTTTCGG+GGG 0.623527 tig0012622:-14575 Msa1352600:intergenic
AAGTGTAAAATAGGGATAGG+GGG 0.629668 tig0012622:+19221 Msa1352600:three_prime_UTR
CAGAGCTTATGTTCCTGCAG+TGG 0.631210 tig0012622:+15325 Msa1352600:CDS
ATCCGCCCGCGTAGTCCCGG+TGG 0.636404 tig0012622:-15385 Msa1352600:intergenic
GCAGGTCTCAACCCAGACGA+TGG 0.646391 tig0012622:-16563 Msa1352600:intergenic
TAGGTGGCGATGGAGACAGA+AGG 0.647132 tig0012622:+15522 Msa1352600:intron
ATAGGTCAAGAAAGTTACCA+TGG 0.647136 tig0012622:-19943 Msa1352600:intergenic
TAGGTCAAGAAAGTTACCAT+GGG 0.647262 tig0012622:-19942 Msa1352600:intergenic
AACCCAGACGATGGAACACG+AGG 0.649490 tig0012622:-16554 Msa1352600:intergenic
ATTGGAATAACTTACTTGAG+CGG 0.652746 tig0012622:-14662 Msa1352600:intergenic
TCAATTCCACCGGGACTACG+CGG 0.654300 tig0012622:+15379 Msa1352600:CDS
AAGGGTTAAGAAGTGTTTCG+GGG 0.654420 tig0012622:-14576 Msa1352600:intergenic
CACGACACTGAAAACTGCTG+GGG 0.666303 tig0012622:-14357 Msa1352600:intergenic
CCAAACACTATATGACCGCA+TGG 0.666618 tig0012622:-19795 Msa1352600:intergenic
AGGTTTAAGAAGTTCAACAC+AGG 0.669570 tig0012622:-19299 Msa1352600:intergenic
TTGATGGATGGAGTGTAAAG+GGG 0.673185 tig0012622:+18907 Msa1352600:intron
ATATTTACATCAATTCCACC+GGG 0.676291 tig0012622:+15370 Msa1352600:CDS
TGTTCTTATTCATGCCAAGG+AGG 0.676497 tig0012622:+16592 Msa1352600:CDS
AGTGAAACGAGTAGATGAAG+CGG 0.677719 tig0012622:-14440 Msa1352600:intergenic
TCGAAAGCATGTCGCCATGG+TGG 0.687719 tig0012622:-14401 Msa1352600:intergenic
GGGAGTGGCCATGAGTTGAG+GGG 0.690706 tig0012622:-14641 Msa1352600:intergenic
TCTCCAGAATTTATTCCCAG+GGG 0.696592 tig0012622:-19005 Msa1352600:intergenic
GTGCAACAAAATCACCACCA+TGG 0.710343 tig0012622:+14387 Msa1352600:exon
AACGTGCTCATTCCTCCATG+CGG 0.713999 tig0012622:+19780 Msa1352600:three_prime_UTR
AACACTATATGACCGCATGG+AGG 0.754509 tig0012622:-19792 Msa1352600:intergenic
AATGATGCAGATGAAAACTG+AGG 0.775475 tig0012622:+15563 Msa1352600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATAAAATAAA+AGG - tig0012622:15220-15239 Msa1352600:intergenic 0.0%
!!! TTTTATTTTATTTTATTTTA+TGG + tig0012622:15219-15238 Msa1352600:intron 0.0%
!!! TTTATTTTATTTTATTTTAT+GGG + tig0012622:15220-15239 Msa1352600:intron 0.0%
!!! TAATATTTTGAAATTTATAC+AGG - tig0012622:19088-19107 Msa1352600:intergenic 10.0%
!!! TATTGTCTTATTATTATTTT+TGG + tig0012622:19112-19131 Msa1352600:three_prime_UTR 10.0%
!!! TTAAACATTTTTAAAAATCA+AGG + tig0012622:19657-19676 Msa1352600:three_prime_UTR 10.0%
!!! TAAACATTTTTAAAAATCAA+GGG + tig0012622:19658-19677 Msa1352600:three_prime_UTR 10.0%
!! ATTATTATTATTATCTTCTG+TGG + tig0012622:14841-14860 Msa1352600:intron 15.0%
!! TTGAATGTAATTAAATGTTT+CGG + tig0012622:15029-15048 Msa1352600:intron 15.0%
!!! TAAATATATATTGGTTCTTT+AGG - tig0012622:15357-15376 Msa1352600:intergenic 15.0%
!! GAATTGATGTAAATATATAT+TGG - tig0012622:15366-15385 Msa1352600:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG - tig0012622:15980-15999 Msa1352600:intergenic 15.0%
!! ATAAGTTAGTAGTATTAATT+AGG - tig0012622:15981-16000 Msa1352600:intergenic 15.0%
!! TTTAATACATATACAAACAA+AGG + tig0012622:16022-16041 Msa1352600:intron 15.0%
!!! AATTATTATTTTTTGGCAAA+AGG - tig0012622:17199-17218 Msa1352600:intergenic 15.0%
!!! ACTTTTTAATTTTAGTTAGT+GGG - tig0012622:17223-17242 Msa1352600:intergenic 15.0%
!! GATATTTAAAAACAAATAAG+TGG - tig0012622:17288-17307 Msa1352600:intergenic 15.0%
!!! CATTTATTGTTTTTGACTTT+AGG + tig0012622:15503-15522 Msa1352600:intron 20.0%
!!! ATATGATGACACAATTATTT+TGG + tig0012622:15669-15688 Msa1352600:intron 20.0%
!!! TATGATGACACAATTATTTT+GGG + tig0012622:15670-15689 Msa1352600:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - tig0012622:15979-15998 Msa1352600:intergenic 20.0%
!! TTAAATCAAAAACAAATTCC+AGG - tig0012622:16168-16187 Msa1352600:intergenic 20.0%
!! ACAAAAACATAGAAACAATT+GGG - tig0012622:16464-16483 Msa1352600:intergenic 20.0%
!! AACAAAAACATAGAAACAAT+TGG - tig0012622:16465-16484 Msa1352600:intergenic 20.0%
!!! AGATGTATTTTAAAATAGTG+TGG - tig0012622:16751-16770 Msa1352600:intergenic 20.0%
!!! AGTGGGTAATTATTATTTTT+TGG - tig0012622:17206-17225 Msa1352600:intergenic 20.0%
!!! CACTTTTTAATTTTAGTTAG+TGG - tig0012622:17224-17243 Msa1352600:intergenic 20.0%
!! TGGATATCATATTTATTCAA+TGG + tig0012622:18127-18146 Msa1352600:intron 20.0%
!!! ATAGATTTTAGTTTCTCTTT+TGG + tig0012622:18771-18790 Msa1352600:exon 20.0%
!! AGGTTTAAATTATTCAGAAT+TGG - tig0012622:19068-19087 Msa1352600:intergenic 20.0%
!! TTGTAGATAAAGTGTAAAAT+AGG + tig0012622:19212-19231 Msa1352600:three_prime_UTR 20.0%
!! TGTAGATAAAGTGTAAAATA+GGG + tig0012622:19213-19232 Msa1352600:three_prime_UTR 20.0%
!!! AATTATATTCTTTTCTTAGC+AGG + tig0012622:19850-19869 Msa1352600:three_prime_UTR 20.0%
!!! TCAAAACTTTTGAATGAAAA+AGG - tig0012622:20004-20023 Msa1352600:intergenic 20.0%
! ATCCAAAAAAGGAAGATTAT+CGG - tig0012622:14611-14630 Msa1352600:intergenic 25.0%
! GAATCGAAAATATCCAAAAA+AGG - tig0012622:14622-14641 Msa1352600:intergenic 25.0%
! AGTAAGTTATTCCAATTTCT+AGG + tig0012622:14669-14688 Msa1352600:intron 25.0%
! TTTCTTGAATTCCTAGAAAT+TGG - tig0012622:14683-14702 Msa1352600:intergenic 25.0%
! TTTAGAAGTAGTTTCGATTA+AGG + tig0012622:14735-14754 Msa1352600:intron 25.0%
! AATTGAGTACTTAACATCTT+TGG + tig0012622:14786-14805 Msa1352600:intron 25.0%
! TATATTTACATCAATTCCAC+CGG + tig0012622:15369-15388 Msa1352600:CDS 25.0%
! ACATTTCAATATAACAAGCA+AGG - tig0012622:15434-15453 Msa1352600:intergenic 25.0%
!!! TTATTGTTTTTGACTTTAGG+TGG + tig0012622:15506-15525 Msa1352600:intron 25.0%
! GGACAAAAATAAAGTCAAAT+GGG - tig0012622:15898-15917 Msa1352600:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG - tig0012622:15933-15952 Msa1352600:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - tig0012622:15934-15953 Msa1352600:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - tig0012622:15969-15988 Msa1352600:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG + tig0012622:16031-16050 Msa1352600:intron 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG + tig0012622:16104-16123 Msa1352600:intron 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG + tig0012622:16105-16124 Msa1352600:intron 25.0%
!!! GTACTTTTAAAGAATTGTGA+TGG + tig0012622:16198-16217 Msa1352600:intron 25.0%
!!! AAAGAATTGTGATGGATAAT+AGG + tig0012622:16206-16225 Msa1352600:intron 25.0%
!! CAGATTTGATACTTTTCTAT+TGG + tig0012622:16505-16524 Msa1352600:intron 25.0%
! TCATTCCCAATATAAAAACA+CGG - tig0012622:16641-16660 Msa1352600:intergenic 25.0%
! AAATGTGCTCAAATATAGTA+AGG - tig0012622:16784-16803 Msa1352600:intergenic 25.0%
! ACAAATATCCTCCATATATT+TGG + tig0012622:16917-16936 Msa1352600:intron 25.0%
! AACTATCCATTCCAAATATA+TGG - tig0012622:16931-16950 Msa1352600:intergenic 25.0%
! TTAGAGAAAAAAACTACACA+TGG - tig0012622:16965-16984 Msa1352600:intergenic 25.0%
!! TTTTCTCTAATTTGACTCTA+AGG + tig0012622:16975-16994 Msa1352600:intron 25.0%
!! TAATCTAGCTTATAGAGTAT+TGG + tig0012622:17017-17036 Msa1352600:intron 25.0%
! TCGTATTTCAGCTAAATTAT+TGG + tig0012622:17354-17373 Msa1352600:intron 25.0%
! CTATAAACATTACATGTAGT+TGG + tig0012622:17437-17456 Msa1352600:intron 25.0%
! AACATATTAACATTAGAGTG+AGG - tig0012622:17508-17527 Msa1352600:intergenic 25.0%
! AAGGTTTATGAAAAATGTTC+AGG - tig0012622:17928-17947 Msa1352600:intergenic 25.0%
! AATAGATAGATGTACAGTAA+AGG - tig0012622:17947-17966 Msa1352600:intergenic 25.0%
! AAGTAAGTGCTTATTTACAT+CGG + tig0012622:18283-18302 Msa1352600:intron 25.0%
!! TTATTGGTTGAAATGCATAT+AGG + tig0012622:18380-18399 Msa1352600:intron 25.0%
! TTATTGGGTGAAATACATTT+GGG - tig0012622:18447-18466 Msa1352600:intergenic 25.0%
!! GTACTTCAAAAACATGTTTT+AGG - tig0012622:19148-19167 Msa1352600:intergenic 25.0%
!! AGTACCTTTAAATGTACTTT+TGG + tig0012622:19163-19182 Msa1352600:three_prime_UTR 25.0%
!! GAAACCAAAAGTACATTTAA+AGG - tig0012622:19170-19189 Msa1352600:intergenic 25.0%
! ATAAAGTGTAAAATAGGGAT+AGG + tig0012622:19218-19237 Msa1352600:three_prime_UTR 25.0%
! TAAAGTGTAAAATAGGGATA+GGG + tig0012622:19219-19238 Msa1352600:three_prime_UTR 25.0%
! TTTGCATATGCTTAGATTAT+AGG - tig0012622:19964-19983 Msa1352600:intergenic 25.0%
! ATAATCTAAGCATATGCAAA+CGG + tig0012622:19964-19983 Msa1352600:three_prime_UTR 25.0%
! GTTGAAAGGAATTTTGGATT+TGG - tig0012622:14509-14528 Msa1352600:intergenic 30.0%
TCCAAAAAAGGAAGATTATC+GGG - tig0012622:14610-14629 Msa1352600:intergenic 30.0%
ATTGGAATAACTTACTTGAG+CGG - tig0012622:14665-14684 Msa1352600:intergenic 30.0%
TAGTTTCGATTAAGGTTAGA+CGG + tig0012622:14743-14762 Msa1352600:intron 30.0%
! GTAATTAAATGTTTCGGTGT+CGG + tig0012622:15035-15054 Msa1352600:intron 30.0%
AGTTGTATTATTACCATGAC+AGG + tig0012622:15140-15159 Msa1352600:intron 30.0%
! ATCAATTCAGAGCATTAAGA+GGG - tig0012622:15193-15212 Msa1352600:intergenic 30.0%
! AATCAATTCAGAGCATTAAG+AGG - tig0012622:15194-15213 Msa1352600:intergenic 30.0%
ATATTTACATCAATTCCACC+GGG + tig0012622:15370-15389 Msa1352600:CDS 30.0%
!!! TTTTGGGTTGCTTTGATTTA+TGG + tig0012622:15686-15705 Msa1352600:intron 30.0%
AACATTACCACATCAACTAT+TGG + tig0012622:15743-15762 Msa1352600:intron 30.0%
ACATTACCACATCAACTATT+GGG + tig0012622:15744-15763 Msa1352600:intron 30.0%
CAAAAATAAAGTCAAATGGG+TGG - tig0012622:15895-15914 Msa1352600:intergenic 30.0%
GGGACAAAAATAAAGTCAAA+TGG - tig0012622:15899-15918 Msa1352600:intergenic 30.0%
TGAAAAGGGGTTTAGATTTA+GGG - tig0012622:15919-15938 Msa1352600:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG - tig0012622:15920-15939 Msa1352600:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - tig0012622:15932-15951 Msa1352600:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+GGG + tig0012622:16106-16125 Msa1352600:intron 30.0%
AAATGTGAAAAAAGCAAAGG+GGG + tig0012622:16107-16126 Msa1352600:intron 30.0%
GATGAACAAATCGCTTAAAA+AGG - tig0012622:16272-16291 Msa1352600:intergenic 30.0%
TCAAATCTGTGAGGAATTAA+AGG - tig0012622:16494-16513 Msa1352600:intergenic 30.0%
!! AGAAAAGTATCAAATCTGTG+AGG - tig0012622:16503-16522 Msa1352600:intergenic 30.0%
ATAAATTTGACTAACCTCCT+TGG - tig0012622:16609-16628 Msa1352600:intergenic 30.0%
!! CTACACCGTGTTTTTATATT+GGG + tig0012622:16633-16652 Msa1352600:intron 30.0%
!!! TTTTAAAATAGTGTGGCAGA+CGG - tig0012622:16744-16763 Msa1352600:intergenic 30.0%
TCAAATTTACCAGCTGATTA+TGG - tig0012622:16839-16858 Msa1352600:intergenic 30.0%
ATATGGAGGATATTTGTAAC+TGG - tig0012622:16914-16933 Msa1352600:intergenic 30.0%
TATCCTCCATATATTTGGAA+TGG + tig0012622:16922-16941 Msa1352600:intron 30.0%
TATCCATTCCAAATATATGG+AGG - tig0012622:16928-16947 Msa1352600:intergenic 30.0%
TCTCAAAAAAAGCTATAAGC+TGG - tig0012622:17101-17120 Msa1352600:intergenic 30.0%
AATTAAGATAACAACGTGAG+AGG - tig0012622:17161-17180 Msa1352600:intergenic 30.0%
ATTTAGCTGAAATACGAAGT+TGG - tig0012622:17351-17370 Msa1352600:intergenic 30.0%
ATTACACATAAAACCACTAC+AGG + tig0012622:17567-17586 Msa1352600:intron 30.0%
TGTAATGGTTTAAACCTTCA+AGG - tig0012622:17633-17652 Msa1352600:intergenic 30.0%
! TTGTCACTTCTTTCTTGTAA+TGG - tig0012622:17648-17667 Msa1352600:intergenic 30.0%
AGAAAGAAGTGACAAAGAAA+AGG + tig0012622:17653-17672 Msa1352600:intron 30.0%
CAAAGATTTAGAGACATAGT+TGG - tig0012622:18010-18029 Msa1352600:intergenic 30.0%
! TTACCATCACCTGAAAATTT+TGG - tig0012622:18041-18060 Msa1352600:intergenic 30.0%
! ACTCACATTTTCTGTATGTT+TGG - tig0012622:18091-18110 Msa1352600:intergenic 30.0%
AAATGTGAGTATCTTGCATT+AGG + tig0012622:18101-18120 Msa1352600:intron 30.0%
ATATTTATTCAATGGACACG+AGG + tig0012622:18135-18154 Msa1352600:intron 30.0%
TATTTATTCAATGGACACGA+GGG + tig0012622:18136-18155 Msa1352600:intron 30.0%
ATATTACATGGACGCATTAT+TGG + tig0012622:18236-18255 Msa1352600:intron 30.0%
! CATTATTGGCTAAGGAATTT+GGG + tig0012622:18250-18269 Msa1352600:intron 30.0%
! ATTATTGGCTAAGGAATTTG+GGG + tig0012622:18251-18270 Msa1352600:intron 30.0%
AGTAAGTGCTTATTTACATC+GGG + tig0012622:18284-18303 Msa1352600:intron 30.0%
CTTATTGGGTGAAATACATT+TGG - tig0012622:18448-18467 Msa1352600:intergenic 30.0%
AAATATGTTACTGCGAAATG+TGG + tig0012622:18834-18853 Msa1352600:intron 30.0%
!!! TCTCACTTGTTTTTGATGAA+TGG + tig0012622:18867-18886 Msa1352600:intron 30.0%
AAAGTGTAAAATAGGGATAG+GGG + tig0012622:19220-19239 Msa1352600:three_prime_UTR 30.0%
GAGACATAATAAGCAACATT+TGG + tig0012622:19243-19262 Msa1352600:three_prime_UTR 30.0%
ACTTGCCAGATTATTTAAAG+CGG - tig0012622:19327-19346 Msa1352600:intergenic 30.0%
!! AAGTTTGAGATAACCCATTT+TGG + tig0012622:19343-19362 Msa1352600:three_prime_UTR 30.0%
TTTAAAAATCAAGGGCTCAT+AGG + tig0012622:19666-19685 Msa1352600:three_prime_UTR 30.0%
!! GTTTTCACTTTTCAGTGAAT+AGG - tig0012622:19703-19722 Msa1352600:intergenic 30.0%
! GTATGAAGCGTGATTGTTTT+TGG - tig0012622:14321-14340 Msa1017650:intergenic 35.0%
AGAGTTCTCAATCTTCTTGT+TGG - tig0012622:14466-14485 Msa1352600:intergenic 35.0%
! GTTAGGGTTGAAAGGAATTT+TGG - tig0012622:14515-14534 Msa1352600:intergenic 35.0%
!! AGAAGGGTTAAGAAGTGTTT+CGG - tig0012622:14581-14600 Msa1352600:intergenic 35.0%
!!! TCCCGATAATCTTCCTTTTT+TGG + tig0012622:14606-14625 Msa1352600:CDS 35.0%
TTGGAATAACTTACTTGAGC+GGG - tig0012622:14664-14683 Msa1352600:intergenic 35.0%
AACGGTCGAATTGTTTACAT+TGG + tig0012622:14948-14967 Msa1352600:CDS 35.0%
ATGCACAATTGAACACTTAC+AGG - tig0012622:14978-14997 Msa1352600:intergenic 35.0%
! TTTGAAACTCAATCCTGTCA+TGG - tig0012622:15156-15175 Msa1352600:intergenic 35.0%
!! TCTTGTTTCTACCTATCAGT+TGG + tig0012622:15275-15294 Msa1352600:intron 35.0%
CTGCATCATTGCATCATAAA+TGG - tig0012622:15553-15572 Msa1352600:intergenic 35.0%
AATGATGCAGATGAAAACTG+AGG + tig0012622:15563-15582 Msa1352600:CDS 35.0%
GAGGGAGTAAAATTTAACTG+TGG - tig0012622:15857-15876 Msa1352600:intergenic 35.0%
CAAATGGGTGGTTAGATATA+GGG - tig0012622:15883-15902 Msa1352600:intergenic 35.0%
TCAAATGGGTGGTTAGATAT+AGG - tig0012622:15884-15903 Msa1352600:intergenic 35.0%
AATGTGAAAAAAGCAAAGGG+GGG + tig0012622:16108-16127 Msa1352600:intron 35.0%
GGTTAATTATTTGTGTGCTC+AGG + tig0012622:16227-16246 Msa1352600:intron 35.0%
AATATCATGTCCCACGTATT+TGG + tig0012622:16311-16330 Msa1352600:intron 35.0%
TCAAGCCTGTCTATTACTTT+CGG + tig0012622:16384-16403 Msa1352600:CDS 35.0%
TGAATAAGAACATCACTTGC+AGG - tig0012622:16584-16603 Msa1352600:intergenic 35.0%
TGATGTTCTTATTCATGCCA+AGG + tig0012622:16589-16608 Msa1352600:CDS 35.0%
!! GCTACACCGTGTTTTTATAT+TGG + tig0012622:16632-16651 Msa1352600:intron 35.0%
!! TTTGACTCTAAGGCTATGTT+TGG + tig0012622:16985-17004 Msa1352600:intron 35.0%
TTGATCAAATGAGACGTGTT+TGG + tig0012622:17058-17077 Msa1352600:intron 35.0%
AGAACACTAGAAGAATGCAA+TGG - tig0012622:17261-17280 Msa1352600:intergenic 35.0%
AAAAGCCATGATGCAATGTT+TGG + tig0012622:17319-17338 Msa1352600:intron 35.0%
ACTCATTTCTAAACCTGTAG+TGG - tig0012622:17583-17602 Msa1352600:intergenic 35.0%
AAGAAGTGACAAAGAAAAGG+AGG + tig0012622:17656-17675 Msa1352600:intron 35.0%
AGAAGTGACAAAGAAAAGGA+GGG + tig0012622:17657-17676 Msa1352600:intron 35.0%
AGAGACATAGTTGGACATTT+AGG - tig0012622:18001-18020 Msa1352600:intergenic 35.0%
!!! ACCTGAAAATTTTGGAGTAC+AGG - tig0012622:18033-18052 Msa1352600:intergenic 35.0%
!!! ACTCCAAAATTTTCAGGTGA+TGG + tig0012622:18035-18054 Msa1352600:intron 35.0%
!!! ATTTTCAGGTGATGGTAAAC+AGG + tig0012622:18043-18062 Msa1352600:intron 35.0%
!!! TTTTCAGGTGATGGTAAACA+GGG + tig0012622:18044-18063 Msa1352600:intron 35.0%
GGACACTCTAGTTAAACTAT+TGG + tig0012622:18065-18084 Msa1352600:CDS 35.0%
GAGTATCTTGCATTAGGTAT+TGG + tig0012622:18107-18126 Msa1352600:intron 35.0%
ATTTATTCAATGGACACGAG+GGG + tig0012622:18137-18156 Msa1352600:intron 35.0%
!!! CTTTTAAAACTACTAGTCCG+AGG + tig0012622:18185-18204 Msa1352600:intron 35.0%
ATATGACCTCTTCATCACAT+TGG - tig0012622:18220-18239 Msa1352600:intergenic 35.0%
GATGAAGAGGTCATATTACA+TGG + tig0012622:18224-18243 Msa1352600:intron 35.0%
! GCATTATTGGCTAAGGAATT+TGG + tig0012622:18249-18268 Msa1352600:intron 35.0%
! AAAATGGGTTCCACATAAAG+TGG - tig0012622:18411-18430 Msa1352600:intergenic 35.0%
! GAACCCATTTTCAAAGTTGT+GGG + tig0012622:18420-18439 Msa1352600:intron 35.0%
TTTGCTGACCAAACTAATGT+TGG + tig0012622:18646-18665 Msa1352600:intron 35.0%
ACAGTGTTCCAACATTAGTT+TGG - tig0012622:18657-18676 Msa1352600:intergenic 35.0%
AACACTGTTCTCAGATTCTT+TGG + tig0012622:18669-18688 Msa1352600:intron 35.0%
TCGCAGTAACATATTTAGAG+AGG - tig0012622:18830-18849 Msa1352600:intergenic 35.0%
!! TTTTGATGGATGGAGTGTAA+AGG + tig0012622:18905-18924 Msa1352600:intron 35.0%
! TTTGATGGATGGAGTGTAAA+GGG + tig0012622:18906-18925 Msa1352600:intron 35.0%
GCAATCAAATTTCATGCAGA+AGG - tig0012622:18933-18952 Msa1352600:intergenic 35.0%
CACATCATCTATGTAGTTCA+TGG - tig0012622:18962-18981 Msa1352600:intergenic 35.0%
ATCTCCAGAATTTATTCCCA+GGG - tig0012622:19009-19028 Msa1352600:intergenic 35.0%
AATCTCCAGAATTTATTCCC+AGG - tig0012622:19010-19029 Msa1352600:intergenic 35.0%
! ATTCTGGAGATTGCAGTATA+TGG + tig0012622:19018-19037 Msa1352600:three_prime_UTR 35.0%
AAGTGTAAAATAGGGATAGG+GGG + tig0012622:19221-19240 Msa1352600:three_prime_UTR 35.0%
! AAGCAACATTTGGTTCATAC+AGG + tig0012622:19253-19272 Msa1352600:three_prime_UTR 35.0%
AGGTTTAAGAAGTTCAACAC+AGG - tig0012622:19302-19321 Msa1352600:intergenic 35.0%
! CTTGCCAGATTATTTAAAGC+GGG - tig0012622:19326-19345 Msa1352600:intergenic 35.0%
TTGACTAGATGTGCCAAAAT+GGG - tig0012622:19359-19378 Msa1352600:intergenic 35.0%
ATTGACTAGATGTGCCAAAA+TGG - tig0012622:19360-19379 Msa1352600:intergenic 35.0%
! ACTGTATCTAGACCTTTTCT+TGG + tig0012622:19412-19431 Msa1352600:three_prime_UTR 35.0%
AGAAAACAATTGCATGTCAG+AGG - tig0012622:19504-19523 Msa1352600:intergenic 35.0%
TAGGTCAAGAAAGTTACCAT+GGG - tig0012622:19945-19964 Msa1352600:intergenic 35.0%
ATAGGTCAAGAAAGTTACCA+TGG - tig0012622:19946-19965 Msa1352600:intergenic 35.0%
AGTGAAACGAGTAGATGAAG+CGG - tig0012622:14443-14462 Msa1352600:intergenic 40.0%
GGATTTGGCTATTGCGTTAA+CGG - tig0012622:14494-14513 Msa1352600:intergenic 40.0%
AAGCGAGTTTGGAGAGAAAT+GGG - tig0012622:14540-14559 Msa1352600:intergenic 40.0%
!! AAGGGTTAAGAAGTGTTTCG+GGG - tig0012622:14579-14598 Msa1352600:intergenic 40.0%
!! GAAGGGTTAAGAAGTGTTTC+GGG - tig0012622:14580-14599 Msa1352600:intergenic 40.0%
GATTATCGGGAGAAGAAGAA+GGG - tig0012622:14597-14616 Msa1352600:intergenic 40.0%
AGATTATCGGGAGAAGAAGA+AGG - tig0012622:14598-14617 Msa1352600:intergenic 40.0%
ATACAAAGCATGTGTCCAAG+CGG - tig0012622:15469-15488 Msa1352600:intergenic 40.0%
CTTGGACACATGCTTTGTAT+GGG + tig0012622:15469-15488 Msa1352600:intron 40.0%
!!! TTTTTGACTTTAGGTGGCGA+TGG + tig0012622:15512-15531 Msa1352600:intron 40.0%
GTGTAAACGATTCATACTGC+TGG + tig0012622:15772-15791 Msa1352600:intron 40.0%
CAGATAAACACAGTTGCTCT+TGG + tig0012622:16349-16368 Msa1352600:intron 40.0%
TATATGACGCCACATGCAAA+AGG + tig0012622:16427-16446 Msa1352600:CDS 40.0%
TGTTCTTATTCATGCCAAGG+AGG + tig0012622:16592-16611 Msa1352600:CDS 40.0%
TGTTGTCGATGTCTGACAAT+TGG + tig0012622:16700-16719 Msa1352600:intron 40.0%
CTGATTATGGACACTAGGTT+TGG - tig0012622:16826-16845 Msa1352600:intergenic 40.0%
CACTAGAAGAATGCAATGGA+AGG - tig0012622:17257-17276 Msa1352600:intergenic 40.0%
AAACCCCATCTATGCACAAT+CGG + tig0012622:17388-17407 Msa1352600:intron 40.0%
! ACTACCGATTGTGCATAGAT+GGG - tig0012622:17395-17414 Msa1352600:intergenic 40.0%
ACTGCACAATTTGTCCTTGA+AGG + tig0012622:17616-17635 Msa1352600:intron 40.0%
GAAGTGACAAAGAAAAGGAG+GGG + tig0012622:17658-17677 Msa1352600:intron 40.0%
! TCAGTTGACGTTAAAGTGCT+GGG - tig0012622:17791-17810 Msa1352600:intergenic 40.0%
CTAAGTCATAAGCTAGCTGA+TGG - tig0012622:17866-17885 Msa1352600:intergenic 40.0%
GCTCACATTTAAGCTCAGTT+TGG - tig0012622:17894-17913 Msa1352600:intergenic 40.0%
! GCCTGTACTCCAAAATTTTC+AGG + tig0012622:18029-18048 Msa1352600:intron 40.0%
CAGTTTCCAATGTGATGAAG+AGG + tig0012622:18211-18230 Msa1352600:intron 40.0%
CCAATAAGAGAGTGAGTGTT+AGG - tig0012622:18367-18386 Msa1352600:intergenic 40.0%
CCTAACACTCACTCTCTTAT+TGG + tig0012622:18364-18383 Msa1352600:intron 40.0%
ATAGGTTCCACCACTTTATG+TGG + tig0012622:18398-18417 Msa1352600:intron 40.0%
! GGAACCCATTTTCAAAGTTG+TGG + tig0012622:18419-18438 Msa1352600:intron 40.0%
! GGTCCCACAACTTTGAAAAT+GGG - tig0012622:18426-18445 Msa1352600:intergenic 40.0%
! TTGATGGATGGAGTGTAAAG+GGG + tig0012622:18907-18926 Msa1352600:intron 40.0%
! GAGCATAGGAGCTTTTATGA+AGG - tig0012622:18986-19005 Msa1352600:intergenic 40.0%
TCTCCAGAATTTATTCCCAG+GGG - tig0012622:19008-19027 Msa1352600:intergenic 40.0%
! CATTTGGTTCATACAGGAAC+TGG + tig0012622:19259-19278 Msa1352600:three_prime_UTR 40.0%
AAGAAGTTCAACACAGGAGT+TGG - tig0012622:19296-19315 Msa1352600:intergenic 40.0%
! CCAGATTATTTAAAGCGGGA+AGG - tig0012622:19322-19341 Msa1352600:intergenic 40.0%
! CCTTCCCGCTTTAAATAATC+TGG + tig0012622:19319-19338 Msa1352600:three_prime_UTR 40.0%
AGGATATCAAGCTGTGACTA+GGG - tig0012622:19442-19461 Msa1352600:intergenic 40.0%
AAGGATATCAAGCTGTGACT+AGG - tig0012622:19443-19462 Msa1352600:intergenic 40.0%
GCTTGATATCCTTGTCTACT+TGG + tig0012622:19450-19469 Msa1352600:three_prime_UTR 40.0%
GTCTGTTAACCAAGTAGACA+AGG - tig0012622:19462-19481 Msa1352600:intergenic 40.0%
TAAAGAATGTCGAGTGCAGT+AGG + tig0012622:19543-19562 Msa1352600:three_prime_UTR 40.0%
ATTGCAGGTTACAAACGTTC+TGG + tig0012622:19591-19610 Msa1352600:three_prime_UTR 40.0%
TTGCAGGTTACAAACGTTCT+GGG + tig0012622:19592-19611 Msa1352600:three_prime_UTR 40.0%
AACCTCCAACACTGGTATTA+GGG - tig0012622:19618-19637 Msa1352600:intergenic 40.0%
AAACCTCCAACACTGGTATT+AGG - tig0012622:19619-19638 Msa1352600:intergenic 40.0%
TAAACAGAAACCTCCAACAC+TGG - tig0012622:19626-19645 Msa1352600:intergenic 40.0%
! CACTTTTCAGTGAATAGGTG+CGG - tig0012622:19698-19717 Msa1352600:intergenic 40.0%
TGAAAGCTGTAGTGCATAGA+AGG + tig0012622:19734-19753 Msa1352600:three_prime_UTR 40.0%
!! ATTTTACTAGCTTCCTCCCA+TGG + tig0012622:19926-19945 Msa1352600:three_prime_UTR 40.0%
ACACGACACTGAAAACTGCT+GGG - tig0012622:14361-14380 Msa1017650:intergenic 45.0%
GTGCAACAAAATCACCACCA+TGG + tig0012622:14387-14406 Msa1352600:exon 45.0%
GTGAAACGAGTAGATGAAGC+GGG - tig0012622:14442-14461 Msa1352600:intergenic 45.0%
AATGGGTCGTTAGGGTTGAA+AGG - tig0012622:14523-14542 Msa1352600:intergenic 45.0%
TGGAGAGAAATGGGTCGTTA+GGG - tig0012622:14531-14550 Msa1352600:intergenic 45.0%
TTGGAGAGAAATGGGTCGTT+AGG - tig0012622:14532-14551 Msa1352600:intergenic 45.0%
GAAGCGAGTTTGGAGAGAAA+TGG - tig0012622:14541-14560 Msa1352600:intergenic 45.0%
!! AGGGTTAAGAAGTGTTTCGG+GGG - tig0012622:14578-14597 Msa1352600:intergenic 45.0%
TTTCGATTCCCCTCAACTCA+TGG + tig0012622:14633-14652 Msa1352600:CDS 45.0%
ATAACTTACTTGAGCGGGAG+TGG - tig0012622:14659-14678 Msa1352600:intergenic 45.0%
!! GTCTTTTGGGTCGTTGTTGT+TGG - tig0012622:14899-14918 Msa1352600:intergenic 45.0%
!! AATCTCTGAAGCACCACACT+TGG - tig0012622:15094-15113 Msa1352600:intergenic 45.0%
! TTCTACCTATCAGTTGGTGC+CGG + tig0012622:15281-15300 Msa1352600:intron 45.0%
TGTTTGATGTTCTGTCCGCT+TGG + tig0012622:15451-15470 Msa1352600:intron 45.0%
GCTTGGACACATGCTTTGTA+TGG + tig0012622:15468-15487 Msa1352600:intron 45.0%
TGGTTAGATATAGGGACGGA+GGG - tig0012622:15875-15894 Msa1352600:intergenic 45.0%
TGGGTGGTTAGATATAGGGA+CGG - tig0012622:15879-15898 Msa1352600:intergenic 45.0%
AGCAAAGGGGGGTTACATTA+AGG + tig0012622:16119-16138 Msa1352600:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG + tig0012622:16120-16139 Msa1352600:intron 45.0%
!! AGGGAGTACTTCATATGACC+TGG + tig0012622:16147-16166 Msa1352600:intron 45.0%
GACGCAAAAGCCAAATACGT+GGG - tig0012622:16324-16343 Msa1352600:intergenic 45.0%
GCAACTGTGTTTATCTGCTC+AGG - tig0012622:16346-16365 Msa1352600:intergenic 45.0%
CCTGTCTATTACTTTCGGCA+GGG + tig0012622:16389-16408 Msa1352600:CDS 45.0%
TTACTTTCGGCAGGGACTAA+AGG + tig0012622:16397-16416 Msa1352600:CDS 45.0%
CAGACATCGACAACATGAGA+AGG - tig0012622:16695-16714 Msa1352600:intergenic 45.0%
ACCTAGTGTCCATAATCAGC+TGG + tig0012622:16827-16846 Msa1352600:intron 45.0%
ACCAGCTGATTATGGACACT+AGG - tig0012622:16831-16850 Msa1352600:intergenic 45.0%
CTTCGCCAAACATTGCATCA+TGG - tig0012622:17327-17346 Msa1352600:intergenic 45.0%
! CTACCGATTGTGCATAGATG+GGG - tig0012622:17394-17413 Msa1352600:intergenic 45.0%
! GACTACCGATTGTGCATAGA+TGG - tig0012622:17396-17415 Msa1352600:intergenic 45.0%
TGACAAAGAAAAGGAGGGGA+TGG + tig0012622:17662-17681 Msa1352600:intron 45.0%
GACAAAGAAAAGGAGGGGAT+GGG + tig0012622:17663-17682 Msa1352600:intron 45.0%
GTCAGTTGACGTTAAAGTGC+TGG - tig0012622:17792-17811 Msa1352600:intergenic 45.0%
CACATTGGAAACTGTCTCCT+CGG - tig0012622:18205-18224 Msa1352600:intergenic 45.0%
! CATGGACGCATTATTGGCTA+AGG + tig0012622:18242-18261 Msa1352600:intron 45.0%
ATGGGTTCCACATAAAGTGG+TGG - tig0012622:18408-18427 Msa1352600:intergenic 45.0%
! GGGTCCCACAACTTTGAAAA+TGG - tig0012622:18427-18446 Msa1352600:intergenic 45.0%
CCAACACTCGCTCTCTTATT+GGG - tig0012622:18462-18481 Msa1352600:intergenic 45.0%
TCCAACACTCGCTCTCTTAT+TGG - tig0012622:18463-18482 Msa1352600:intergenic 45.0%
TGTTCTCAGATTCTTTGGCG+TGG + tig0012622:18674-18693 Msa1352600:intron 45.0%
TTATGGCAGACGTTCCTTCT+CGG + tig0012622:18708-18727 Msa1352600:CDS 45.0%
CACTCCATCCATCAAAACAG+AGG - tig0012622:18902-18921 Msa1352600:intergenic 45.0%
! ATTTATTCCCAGGGGAGCAT+AGG - tig0012622:19000-19019 Msa1352600:intergenic 45.0%
GCAGTATATGGTGCAGTGTT+TGG + tig0012622:19030-19049 Msa1352600:three_prime_UTR 45.0%
! GACTAGGGTGTTCCAAGAAA+AGG - tig0012622:19427-19446 Msa1352600:intergenic 45.0%
! TAGTTGTGTTGCTGCATTGC+AGG + tig0012622:19576-19595 Msa1352600:three_prime_UTR 45.0%
AACACTATATGACCGCATGG+AGG - tig0012622:19795-19814 Msa1352600:intergenic 45.0%
CCAAACACTATATGACCGCA+TGG - tig0012622:19798-19817 Msa1352600:intergenic 45.0%
CCATGCGGTCATATAGTGTT+TGG + tig0012622:19795-19814 Msa1352600:three_prime_UTR 45.0%
GTCAAGAAAGTTACCATGGG+AGG - tig0012622:19942-19961 Msa1352600:intergenic 45.0%
CACGACACTGAAAACTGCTG+GGG - tig0012622:14360-14379 Msa1017650:intergenic 50.0%
CACACGACACTGAAAACTGC+TGG - tig0012622:14362-14381 Msa1017650:intergenic 50.0%
! TACTCGAAAGCATGTCGCCA+TGG - tig0012622:14407-14426 Msa1352600:intergenic 50.0%
GATGAAGCGGGCATGGATAT+GGG - tig0012622:14430-14449 Msa1352600:intergenic 50.0%
AGATGAAGCGGGCATGGATA+TGG - tig0012622:14431-14450 Msa1352600:intergenic 50.0%
! AGGTCAGGAGGTGGTCTTTT+GGG - tig0012622:14912-14931 Msa1352600:intergenic 50.0%
!! AATGTTTCGGTGTCGGACAC+TGG + tig0012622:15042-15061 Msa1352600:intron 50.0%
! TCTGAAGCACCACACTTGGA+AGG - tig0012622:15090-15109 Msa1352600:intergenic 50.0%
ATAACAAGCTCCGTGACAGC+CGG - tig0012622:15303-15322 Msa1352600:intergenic 50.0%
CAGAGCTTATGTTCCTGCAG+TGG + tig0012622:15325-15344 Msa1352600:CDS 50.0%
GCTTATGTTCCTGCAGTGGA+TGG + tig0012622:15329-15348 Msa1352600:CDS 50.0%
GCGGATGGAGAAACGGTAAT+TGG + tig0012622:15402-15421 Msa1352600:intron 50.0%
! CCACAGCCCAATAGTTGATG+TGG - tig0012622:15753-15772 Msa1352600:intergenic 50.0%
CCACATCAACTATTGGGCTG+TGG + tig0012622:15750-15769 Msa1352600:intron 50.0%
GATTCATACTGCTGGCAGCA+TGG + tig0012622:15780-15799 Msa1352600:intron 50.0%
GTGGTTAGATATAGGGACGG+AGG - tig0012622:15876-15895 Msa1352600:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG + tig0012622:16124-16143 Msa1352600:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG + tig0012622:16128-16147 Msa1352600:intron 50.0%
GGACGCAAAAGCCAAATACG+TGG - tig0012622:16325-16344 Msa1352600:intergenic 50.0%
GCCTGTCTATTACTTTCGGC+AGG + tig0012622:16388-16407 Msa1352600:CDS 50.0%
CCCTGCCGAAAGTAATAGAC+AGG - tig0012622:16392-16411 Msa1352600:intergenic 50.0%
! CACGCTGTACCTTTTGCATG+TGG - tig0012622:16439-16458 Msa1352600:intergenic 50.0%
! CACATGCAAAAGGTACAGCG+TGG + tig0012622:16437-16456 Msa1352600:intron 50.0%
AACACGAGGCTGCTGAATCA+TGG - tig0012622:16543-16562 Msa1352600:intergenic 50.0%
CCCAATAAGAGAGCGAGTGT+TGG + tig0012622:18459-18478 Msa1352600:intron 50.0%
CGTCTGCCATAATCTTCTCC+TGG - tig0012622:18700-18719 Msa1352600:intergenic 50.0%
TATGGCAGACGTTCCTTCTC+GGG + tig0012622:18709-18728 Msa1352600:CDS 50.0%
ACGTTCCTTCTCGGGATGAT+CGG + tig0012622:18717-18736 Msa1352600:CDS 50.0%
! TTTTCCCGATCATCCCGAGA+AGG - tig0012622:18725-18744 Msa1352600:intergenic 50.0%
TCTCGGGATGATCGGGAAAA+CGG + tig0012622:18725-18744 Msa1352600:CDS 50.0%
CCATCCATCAAAACAGAGGC+AGG - tig0012622:18898-18917 Msa1352600:intergenic 50.0%
!!! CCTGCCTCTGTTTTGATGGA+TGG + tig0012622:18895-18914 Msa1352600:intron 50.0%
TAAAAGCTCCTATGCTCCCC+TGG + tig0012622:18989-19008 Msa1352600:three_prime_UTR 50.0%
AAAAGCTCCTATGCTCCCCT+GGG + tig0012622:18990-19009 Msa1352600:three_prime_UTR 50.0%
GCTCCCCTGGGAATAAATTC+TGG + tig0012622:19002-19021 Msa1352600:three_prime_UTR 50.0%
GCTGTAGTGCATAGAAGGCA+TGG + tig0012622:19739-19758 Msa1352600:three_prime_UTR 50.0%
AACGTGCTCATTCCTCCATG+CGG + tig0012622:19780-19799 Msa1352600:three_prime_UTR 50.0%
! TCGAAAGCATGTCGCCATGG+TGG - tig0012622:14404-14423 Msa1352600:intergenic 55.0%
ACGAGTAGATGAAGCGGGCA+TGG - tig0012622:14437-14456 Msa1352600:intergenic 55.0%
AGCAGCGACAGAAGCGAGTT+TGG - tig0012622:14551-14570 Msa1352600:intergenic 55.0%
! CAGGTCAGGAGGTGGTCTTT+TGG - tig0012622:14913-14932 Msa1352600:intergenic 55.0%
CTGCCATCGCTTCTGCTCAA+CGG + tig0012622:14930-14949 Msa1352600:CDS 55.0%
CACTGGCATGTGTCAGACAC+CGG + tig0012622:15059-15078 Msa1352600:intron 55.0%
! CCACACTTGGAAGGCATGTC+CGG - tig0012622:15081-15100 Msa1352600:intergenic 55.0%
! CTTTAGGAGCCATCCACTGC+AGG - tig0012622:15341-15360 Msa1352600:intergenic 55.0%
TCAATTCCACCGGGACTACG+CGG + tig0012622:15379-15398 Msa1352600:CDS 55.0%
TAGGTGGCGATGGAGACAGA+AGG + tig0012622:15522-15541 Msa1352600:intron 55.0%
TCATACTGCTGGCAGCATGG+TGG + tig0012622:15783-15802 Msa1352600:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG + tig0012622:16127-16146 Msa1352600:intron 55.0%
GTTGCTCTTGGAGCTGCTGT+AGG + tig0012622:16361-16380 Msa1352600:CDS 55.0%
AGCCTCGTGTTCCATCGTCT+GGG + tig0012622:16552-16571 Msa1352600:CDS 55.0%
AACCCAGACGATGGAACACG+AGG - tig0012622:16557-16576 Msa1352600:intergenic 55.0%
TCAGATTCTTTGGCGTGGCC+AGG + tig0012622:18679-18698 Msa1352600:intron 55.0%
GCGTGGCCAGGAGAAGATTA+TGG + tig0012622:18691-18710 Msa1352600:CDS 55.0%
CGTTCCTTCTCGGGATGATC+GGG + tig0012622:18718-18737 Msa1352600:CDS 55.0%
GATCGGGAAAACGGTACTGC+TGG + tig0012622:18734-18753 Msa1352600:CDS 55.0%
!! GCTGCCTGCCTCTGTTTTGA+TGG + tig0012622:18891-18910 Msa1352600:intron 55.0%
CTGGGCCCTAATACCAGTGT+TGG + tig0012622:19610-19629 Msa1352600:three_prime_UTR 55.0%
! GGCCCTAATACCAGTGTTGG+AGG + tig0012622:19613-19632 Msa1352600:three_prime_UTR 55.0%
! GGGAGTGGCCATGAGTTGAG+GGG - tig0012622:14644-14663 Msa1352600:intergenic 60.0%
! CGGGAGTGGCCATGAGTTGA+GGG - tig0012622:14645-14664 Msa1352600:intergenic 60.0%
AGAAGCGATGGCAGGTCAGG+AGG - tig0012622:14924-14943 Msa1352600:intergenic 60.0%
AGCAGAAGCGATGGCAGGTC+AGG - tig0012622:14927-14946 Msa1352600:intergenic 60.0%
CGTTGAGCAGAAGCGATGGC+AGG - tig0012622:14932-14951 Msa1352600:intergenic 60.0%
CGACCGTTGAGCAGAAGCGA+TGG - tig0012622:14936-14955 Msa1352600:intergenic 60.0%
CCGGACATGCCTTCCAAGTG+TGG + tig0012622:15078-15097 Msa1352600:intron 60.0%
GACAGCCGGCACCAACTGAT+AGG - tig0012622:15289-15308 Msa1352600:intergenic 60.0%
!! TCAGTTGGTGCCGGCTGTCA+CGG + tig0012622:15290-15309 Msa1352600:intron 60.0%
CAATTCCACCGGGACTACGC+GGG + tig0012622:15380-15399 Msa1352600:CDS 60.0%
TACGCGGGCGGATGGAGAAA+CGG + tig0012622:15395-15414 Msa1352600:CDS 60.0%
CAGCCTCGTGTTCCATCGTC+TGG + tig0012622:16551-16570 Msa1352600:CDS 60.0%
GCAGGTCTCAACCCAGACGA+TGG - tig0012622:16566-16585 Msa1352600:intergenic 60.0%
GCGGGAGTGGCCATGAGTTG+AGG - tig0012622:14646-14665 Msa1352600:intergenic 65.0%
AGCGATGGCAGGTCAGGAGG+TGG - tig0012622:14921-14940 Msa1352600:intergenic 65.0%
TTCCACCGGGACTACGCGGG+CGG + tig0012622:15383-15402 Msa1352600:CDS 70.0%
TCCATCCGCCCGCGTAGTCC+CGG - tig0012622:15391-15410 Msa1352600:intergenic 70.0%
ATCCGCCCGCGTAGTCCCGG+TGG - tig0012622:15388-15407 Msa1352600:intergenic 75.0%
ACCGGGACTACGCGGGCGGA+TGG + tig0012622:15387-15406 Msa1352600:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0012622 gene 14290 20030 14290 ID=Msa1352600;Name=Msa1352600
tig0012622 mRNA 14290 20030 14290 ID=Msa1352600-mRNA-1;Parent=Msa1352600;Name=Msa1352600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=116|0.87|1|1|0.62|0.66|9|1140|291
tig0012622 exon 14290 14669 14290 ID=Msa1352600-mRNA-1:exon:8256;Parent=Msa1352600-mRNA-1
tig0012622 exon 14873 14977 14873 ID=Msa1352600-mRNA-1:exon:8257;Parent=Msa1352600-mRNA-1
tig0012622 exon 15294 15416 15294 ID=Msa1352600-mRNA-1:exon:8258;Parent=Msa1352600-mRNA-1
tig0012622 exon 15525 15584 15525 ID=Msa1352600-mRNA-1:exon:8259;Parent=Msa1352600-mRNA-1
tig0012622 exon 16352 16448 16352 ID=Msa1352600-mRNA-1:exon:8260;Parent=Msa1352600-mRNA-1
tig0012622 exon 16540 16613 16540 ID=Msa1352600-mRNA-1:exon:8261;Parent=Msa1352600-mRNA-1
tig0012622 exon 18051 18104 18051 ID=Msa1352600-mRNA-1:exon:8262;Parent=Msa1352600-mRNA-1
tig0012622 exon 18683 18810 18683 ID=Msa1352600-mRNA-1:exon:8263;Parent=Msa1352600-mRNA-1
tig0012622 exon 18920 20030 18920 ID=Msa1352600-mRNA-1:exon:8264;Parent=Msa1352600-mRNA-1
tig0012622 five_prime_UTR 14290 14405 14290 ID=Msa1352600-mRNA-1:five_prime_utr;Parent=Msa1352600-mRNA-1
tig0012622 CDS 14406 14669 14406 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 14873 14977 14873 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 15294 15416 15294 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 15525 15584 15525 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 16352 16448 16352 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 16540 16613 16540 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 18051 18104 18051 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 CDS 18683 18781 18683 ID=Msa1352600-mRNA-1:cds;Parent=Msa1352600-mRNA-1
tig0012622 three_prime_UTR 18782 18810 18782 ID=Msa1352600-mRNA-1:three_prime_utr;Parent=Msa1352600-mRNA-1
tig0012622 three_prime_UTR 18920 20030 18920 ID=Msa1352600-mRNA-1:three_prime_utr;Parent=Msa1352600-mRNA-1
Gene Sequence

>Msa1352600

ATGGCGACATGCTTTCGAGTACCCATATCCATGCCCGCTTCATCTACTCGTTTCACTCCAACAAGAAGATTGAGAACTCTCAGAACCGTTAACGCAATAGCCAAATCCAAAATTCCTTTCAACCCTAACGACCCATTTCTCTCCAAACTCGCTTCTGTCGCTGCTTCTTCCCCCGAAACACTTCTTAACCCTTCTTCTTCTCCCGATAATCTTCCTTTTTTGGATATTTTCGATTCCCCTCAACTCATGGCCACTCCCGCTCAACTTGAAAGAAGTGTTTCATACAGCCAACAACAACGACCCAAAAGACCACCTCCTGACCTGCCATCGCTTCTGCTCAACGGTCGAATTGTTTACATTGGCATGCCTTTGGTGCCGGCTGTCACGGAGCTTGTTATTGCAGAGCTTATGTTCCTGCAGTGGATGGCTCCTAAAGAACCAATATATATTTACATCAATTCCACCGGGACTACGCGGGCGGATGGAGAAACGGTGGCGATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGATGAAAACTGAGATAAACACAGTTGCTCTTGGAGCTGCTGTAGGTCAAGCCTGTCTATTACTTTCGGCAGGGACTAAAGGTAGACGCTATATGACGCCACATGCAAAAGCCATGATTCAGCAGCCTCGTGTTCCATCGTCTGGGTTGAGACCTGCAAGTGATGTTCTTATTCATGCCAAGGAGGTGATGGTAAACAGGGACACTCTAGTTAAACTATTGGCCAAACATACAGAAAATATTCTTTGGCGTGGCCAGGAGAAGATTATGGCAGACGTTCCTTCTCGGGATGATCGGGAAAACGGTACTGCTGGTGCTAAAGTTGAAAATAGATTTTAG

Protein sequence

>Msa1352600

MATCFRVPISMPASSTRFTPTRRLRTLRTVNAIAKSKIPFNPNDPFLSKLASVAASSPETLLNPSSSPDNLPFLDIFDSPQLMATPAQLERSVSYSQQQRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMETEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENILWRGQEKIMADVPSRDDRENGTAGAKVENRF*