AlfalfaGEDB | Msa1100330

M. sativa cultivar zhongmu-4 / Msa1100330

KEGG: -
GO: -
PFAM: PF13360.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100330	XP_024626190.1	95.918	539	22	0	1	539	1	539	0.0	1033

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100330	sp\|P77931\|PVADH_PSESP	26.040	553	313	20	27	539	140	636	4.81e-38	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100330	A2Q5S2	95.918	539	22	0	1	539	1	539	0.0	1033

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1100330	0.820143	8.013788e-53	-8.615850e-47
Msa0001510	Msa1100330	-0.806335	8.646170e-50	-8.615850e-47
Msa0002110	Msa1100330	-0.804152	2.477966e-49	-8.615850e-47
Msa0002690	Msa1100330	-0.810528	1.102207e-50	-8.615850e-47
Msa0002700	Msa1100330	-0.809312	2.013500e-50	-8.615850e-47
Msa0004180	Msa1100330	-0.836138	1.115678e-56	-8.615850e-47
Msa0004900	Msa1100330	0.800464	1.423420e-48	-8.615850e-47
Msa0004940	Msa1100330	0.844661	6.583476e-59	-8.615850e-47
Msa0004990	Msa1100330	0.830274	3.220673e-55	-8.615850e-47
Msa0006080	Msa1100330	0.822878	1.871047e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100330	MtrunA17_Chr7g0216961	95.918	539	22	0	1	539	1	539	0.0	1033
Msa1100330	MtrunA17_Chr7g0216931	65.981	535	173	6	7	539	43	570	0.0	695
Msa1100330	MtrunA17_Chr7g0216921	63.063	111	35	2	431	539	3	109	1.95e-38	136
Msa1100330	MtrunA17_Chr7g0216981	60.811	74	28	1	439	511	1	74	3.43e-20	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 125 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGTGAATATTCTGG+TGG	0.712735	7_3:+29875851	Msa1100330:CDS
AAAGAGAAGTACCACCAGTA+AGG	0.537523	7_3:-29877237	None:intergenic
AAATGATGTCGCCATTGCGA+CGG	0.623372	7_3:-29876285	None:intergenic
AAATGGTACCATCAATTAGG+TGG	0.606186	7_3:+29876088	Msa1100330:CDS
AAATGGTTATACTCTGGGTT+TGG	0.413220	7_3:+29877198	Msa1100330:CDS
AAATTGATGGAACTCTTGTT+TGG	0.366671	7_3:+29873877	Msa1100330:CDS
AACAAGACAACAACGACCGG+AGG	0.684320	7_3:+29876938	Msa1100330:CDS
AACAATGGTTGCATATATCT+TGG	0.341143	7_3:+29877175	Msa1100330:CDS
AACATGTTAATGAACATAAT+AGG	0.371220	7_3:-29872992	None:intergenic
AACCATATATACATTGCCAC+TGG	0.550879	7_3:+29875914	Msa1100330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAGAAATAGCAAGAGTT+GGG	-	chr7_3:29873066-29873085	None:intergenic	30.0%
TCTCATATAACTATCCAAAC+TGG	+	chr7_3:29873157-29873176	Msa1100330:intron	30.0%
AACTCGGAGTATATTGTATA+CGG	-	chr7_3:29873473-29873492	None:intergenic	30.0%
TTAACGAAAAATTTGTGTCG+AGG	+	chr7_3:29873534-29873553	Msa1100330:intron	30.0%
ATGATTTCAGTACACAGAAA+AGG	+	chr7_3:29873653-29873672	Msa1100330:intron	30.0%
ACACAGAAAAGGAACAAAAT+TGG	+	chr7_3:29873664-29873683	Msa1100330:CDS	30.0%
GAACAAAATTGGTTAAACCA+TGG	+	chr7_3:29873675-29873694	Msa1100330:CDS	30.0%
ATTGTTCCATTGAAAATTGC+TGG	-	chr7_3:29873816-29873835	None:intergenic	30.0%
AATATGAAACCATTCCATGA+AGG	-	chr7_3:29873846-29873865	None:intergenic	30.0%
AAATTGATGGAACTCTTGTT+TGG	+	chr7_3:29873877-29873896	Msa1100330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	29872948	29877276	29872948	ID=Msa1100330;Name=Msa1100330
chr7_3	mRNA	29872948	29877276	29872948	ID=Msa1100330-mRNA-1;Parent=Msa1100330;Name=Msa1100330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|539
chr7_3	exon	29872948	29873028	29872948	ID=Msa1100330-mRNA-1:exon:6364;Parent=Msa1100330-mRNA-1
chr7_3	exon	29873663	29874138	29873663	ID=Msa1100330-mRNA-1:exon:6365;Parent=Msa1100330-mRNA-1
chr7_3	exon	29875709	29876315	29875709	ID=Msa1100330-mRNA-1:exon:6366;Parent=Msa1100330-mRNA-1
chr7_3	exon	29876821	29877276	29876821	ID=Msa1100330-mRNA-1:exon:6367;Parent=Msa1100330-mRNA-1
chr7_3	CDS	29872948	29873028	29872948	ID=Msa1100330-mRNA-1:cds;Parent=Msa1100330-mRNA-1
chr7_3	CDS	29873663	29874138	29873663	ID=Msa1100330-mRNA-1:cds;Parent=Msa1100330-mRNA-1
chr7_3	CDS	29875709	29876315	29875709	ID=Msa1100330-mRNA-1:cds;Parent=Msa1100330-mRNA-1
chr7_3	CDS	29876821	29877276	29876821	ID=Msa1100330-mRNA-1:cds;Parent=Msa1100330-mRNA-1

Gene Sequence

>Msa1100330

ATGGCAACAGTCGAGCAAATAACCTGCTTCCTTGTTTCTTTGTTCCTATTATGTTCATTAACATGTTCAGAACGCTCTGATTACACAGAAAAGGAACAAAATTGGTTAAACCATGGTGGAGACATATACAACAGAAGATATGCAAGCAAGGAGCACAAAATAAACCTTAAAACAATTAGCAACTTAACTTTGAAGTGGGAATTCAATGCAGGCAAAGACATAACTGCAACACCAGCAATTTTCAATGGAACAATATATTTTCCTTCATGGAATGGTTTCATATTTGCAGTGAGAGAAATTGATGGAACTCTTGTTTGGAAAAAGAATTTGACAAAATTAACTGGTCTAGATTCAACAGGTTTTGTTGCGAATGTTAATTGGACAGTGTCTAGGGCAACACCAACTATAGCAGTTGATGAGGATCTTGTGATTGTGGGAATATATGGACCAGCTGTTATTATTGCTGTGAATAGATCAAATGGTGATTTAATTTGGCAAACTCGTTTGGATAGCAATAATGCTAGTGTTGTCACCATGTCTGGGACTTATTACAAAGGGGCATATTATATCGGTTCATCTTCACTAGAAGAACTCAAAAGCCCTGAAGAATGTTGCACCTTTAGGGGAAGTTTTTCAAAGCTAGATATTAAATCTGGTGCCATTTTATGGAAAACCTATATGTTACCTGATAACAATGGCAAAAGAGGTGAATATTCTGGTGGAGCTATATGGGGAAGTAGTCCATCAATTGATGCATCAAGAAACCATATATACATTGCCACTGGAAATTTGTATTCTGCTCCTTTACACATACGTCAATGTCAAGAGGAAGAAAATAATAAAAATTTAACAAGACCAACTCAACCAGATCAATGTGTTGAACCAGAAAATCATTCTAATTCAATCTTAGCACTTGATTTGTACAATGGTGAAATTAAATGGTACCATCAATTAGGTGGATATGATGTTTGGTTCCTTGCTTGTAATGATTTGTCAACACCTAATTGTCCTCCTGGACCTAACCCTGATGCTGATTTTGGAGAAGCACCAATGATGCTCACAATTGATGTAAATGGTACTAAACAAGATATTGTTGTTGCTGTACAAAAGAGTGGTTTTGCTTGGGCTTTGCACCGTCGCAATGGCGACATCATTTGGTCTACGGAAGCTGGACCTGGTGGAATTGCAGGAGGTGGAACATGGGGAGCAGCAACAGACAAAGAAAGAGTTTATACAAACATAGCTAATTCAAATGCGAAGAATTTCACTCTTAAACCATCCAACAAGACAACAACGACCGGAGGTTGGGTAGCAATGGAAGCAAGTAGTGGCAAGATCTTATGGTCCATAGCTAACCCTAGTAATGCAACTGCTAATGGTCCTGTTAGTGTAGCTAATGGCATTGTCTTTGCAGGATCCACAAATAAGAAAGGACCTATCTATGCAATTAACGGTAAGACTGGTGAAATTTTGTGGTCTTATGAGACTGGAGCAACTGTGTATGGTGGTATTTCAATTAACAATGGTTGCATATATCTTGGAAATGGTTATACTCTGGGTTTGGCAACGGTTATTGGAGGCCTTACTGGTGGTACTTCTCTTTATGCCTTTTGTGTTTAA

Protein sequence

>Msa1100330

MATVEQITCFLVSLFLLCSLTCSERSDYTEKEQNWLNHGGDIYNRRYASKEHKINLKTISNLTLKWEFNAGKDITATPAIFNGTIYFPSWNGFIFAVREIDGTLVWKKNLTKLTGLDSTGFVANVNWTVSRATPTIAVDEDLVIVGIYGPAVIIAVNRSNGDLIWQTRLDSNNASVVTMSGTYYKGAYYIGSSSLEELKSPEECCTFRGSFSKLDIKSGAILWKTYMLPDNNGKRGEYSGGAIWGSSPSIDASRNHIYIATGNLYSAPLHIRQCQEEENNKNLTRPTQPDQCVEPENHSNSILALDLYNGEIKWYHQLGGYDVWFLACNDLSTPNCPPGPNPDADFGEAPMMLTIDVNGTKQDIVVAVQKSGFAWALHRRNGDIIWSTEAGPGGIAGGGTWGAATDKERVYTNIANSNAKNFTLKPSNKTTTTGGWVAMEASSGKILWSIANPSNATANGPVSVANGIVFAGSTNKKGPIYAINGKTGEILWSYETGATVYGGISINNGCIYLGNGYTLGLATVIGGLTGGTSLYAFCV*