AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094810 MtrunA17_Chr7g0233771 97.473 554 14 0 1 554 1 554 0.0 1121
Msa1094810 MtrunA17_Chr7g0233801 84.477 554 85 1 1 554 1 553 0.0 960
Msa1094810 MtrunA17_Chr7g0233831 82.703 555 95 1 1 554 1 555 0.0 960
Msa1094810 MtrunA17_Chr7g0269541 46.558 552 272 9 24 554 7 556 1.21e-162 474
Msa1094810 MtrunA17_Chr2g0302021 53.007 449 189 9 117 554 88 525 6.81e-159 464
Msa1094810 MtrunA17_Chr1g0147051 47.347 490 221 9 97 554 123 607 8.06e-157 461
Msa1094810 MtrunA17_Chr8g0345281 47.259 529 236 11 52 554 78 589 1.99e-154 454
Msa1094810 MtrunA17_Chr4g0069841 49.677 465 213 7 99 554 64 516 6.23e-152 446
Msa1094810 MtrunA17_Chr3g0126771 42.222 585 286 13 10 554 25 597 2.94e-149 441
Msa1094810 MtrunA17_Chr4g0011791 46.704 531 247 14 31 554 8 509 1.62e-147 434
Msa1094810 MtrunA17_Chr8g0391291 43.009 565 270 12 14 554 3 539 1.41e-145 430
Msa1094810 MtrunA17_Chr8g0391311 44.256 531 247 9 47 554 37 541 2.79e-145 429
Msa1094810 MtrunA17_Chr4g0011771 51.778 450 187 10 112 554 87 513 1.50e-143 424
Msa1094810 MtrunA17_Chr4g0069861 48.206 446 216 6 117 554 79 517 1.26e-141 419
Msa1094810 MtrunA17_Chr4g0011751 47.523 444 204 8 121 554 65 489 4.75e-137 406
Msa1094810 MtrunA17_Chr3g0090091 43.321 554 271 15 15 554 4 528 1.21e-136 407
Msa1094810 MtrunA17_Chr3g0079341 49.091 440 201 10 124 554 102 527 2.96e-136 405
Msa1094810 MtrunA17_Chr3g0079351 49.091 440 201 11 124 554 102 527 4.88e-135 402
Msa1094810 MtrunA17_Chr3g0079361 48.636 440 203 10 124 554 102 527 3.20e-134 400
Msa1094810 MtrunA17_Chr8g0354901 43.738 519 271 12 48 554 72 581 2.13e-132 397
Msa1094810 MtrunA17_Chr7g0272141 41.618 519 264 12 55 554 44 542 3.98e-132 395
Msa1094810 MtrunA17_Chr4g0018371 46.067 445 227 7 117 554 101 539 3.62e-130 390
Msa1094810 MtrunA17_Chr7g0269531 43.217 516 243 10 79 554 60 565 9.17e-130 390
Msa1094810 MtrunA17_Chr3g0080391 42.300 513 264 12 54 550 74 570 1.09e-129 390
Msa1094810 MtrunA17_Chr4g0069881 41.053 475 263 7 83 554 75 535 3.89e-127 382
Msa1094810 MtrunA17_Chr1g0192331 46.756 447 215 10 122 554 91 528 4.69e-125 377
Msa1094810 MtrunA17_Chr1g0175661 40.214 562 281 14 34 554 11 558 4.39e-124 375
Msa1094810 MtrunA17_Chr1g0195331 44.681 470 219 11 121 554 91 555 2.88e-123 373
Msa1094810 MtrunA17_Chr1g0195301 44.468 470 220 11 121 554 91 555 5.15e-123 373
Msa1094810 MtrunA17_Chr1g0195321 44.468 470 220 11 121 554 91 555 5.15e-123 373
Msa1094810 MtrunA17_Chr7g0269511 43.548 496 242 11 94 554 72 564 1.54e-121 369
Msa1094810 MtrunA17_Chr4g0069891 40.038 527 273 13 54 554 84 593 2.18e-121 370
Msa1094810 MtrunA17_Chr8g0345211 40.820 512 275 10 54 550 80 578 2.03e-118 362
Msa1094810 MtrunA17_Chr7g0269521 43.697 476 214 11 121 554 99 562 1.62e-117 359
Msa1094810 MtrunA17_Chr1g0195351 43.777 466 219 12 121 550 91 549 5.74e-117 357
Msa1094810 MtrunA17_Chr1g0194091 39.490 471 253 5 114 554 101 569 2.08e-116 356
Msa1094810 MtrunA17_Chr1g0194081 37.879 528 286 13 54 554 51 563 3.79e-116 355
Msa1094810 MtrunA17_Chr8g0354911 43.305 478 219 9 121 554 143 612 1.82e-115 355
Msa1094810 MtrunA17_Chr3g0080381 41.429 490 221 9 117 554 153 628 9.81e-113 348
Msa1094810 MtrunA17_Chr1g0192311 39.690 451 253 9 116 550 119 566 1.48e-110 341
Msa1094810 MtrunA17_Chr1g0192281 39.690 451 253 9 116 550 119 566 1.48e-110 341
Msa1094810 MtrunA17_Chr1g0192321 38.586 495 264 12 92 553 95 582 2.64e-108 336
Msa1094810 MtrunA17_Chr7g0270651 36.243 527 282 12 54 544 45 553 7.51e-108 334
Msa1094810 MtrunA17_Chr1g0192301 35.878 524 305 12 48 551 60 572 1.65e-105 328
Msa1094810 MtrunA17_Chr7g0272151 38.280 465 258 8 117 553 119 582 1.98e-105 328
Msa1094810 MtrunA17_Chr4g0000121 39.868 454 246 11 117 550 107 553 2.10e-105 328
Msa1094810 MtrunA17_Chr7g0270661 36.224 519 287 11 54 538 45 553 6.10e-105 327
Msa1094810 MtrunA17_Chr7g0270671 36.224 519 287 11 54 538 45 553 6.10e-105 327
Msa1094810 MtrunA17_Chr1g0195311 55.516 281 116 5 278 554 39 314 8.11e-105 317
Msa1094810 MtrunA17_Chr7g0270631 36.571 525 283 11 54 544 33 541 1.95e-102 333
Msa1094810 MtrunA17_Chr7g0270631 33.835 532 294 13 54 543 581 1096 5.58e-90 299
Msa1094810 MtrunA17_Chr2g0295531 35.867 513 304 10 52 550 41 542 1.10e-100 317
Msa1094810 MtrunA17_Chr7g0270691 34.266 572 325 16 10 554 2 549 2.90e-99 311
Msa1094810 MtrunA17_Chr4g0067601 36.508 504 281 13 76 550 75 568 1.20e-98 310
Msa1094810 MtrunA17_Chr4g0067611 36.255 502 291 11 76 553 75 571 1.55e-98 310
Msa1094810 MtrunA17_Chr2g0295551 37.083 480 279 9 92 553 89 563 6.49e-96 303
Msa1094810 MtrunA17_Chr2g0295541 33.393 557 293 14 54 553 59 594 5.12e-91 291
Msa1094810 MtrunA17_Chr7g0234711 58.261 230 93 2 326 554 42 269 7.23e-91 280
Msa1094810 MtrunA17_Chr2g0301931 50.174 287 134 6 269 554 14 292 4.52e-90 279
Msa1094810 MtrunA17_Chr8g0384121 36.626 486 265 14 92 553 97 563 9.30e-90 287
Msa1094810 MtrunA17_Chr2g0302001 46.619 281 141 4 277 554 163 437 1.30e-86 275
Msa1094810 MtrunA17_Chr3g0129921 34.142 577 308 20 27 553 9 563 3.69e-85 275
Msa1094810 MtrunA17_Chr8g0380581 41.071 336 190 5 217 550 43 372 8.96e-84 265
Msa1094810 MtrunA17_Chr5g0437831 38.576 337 202 4 220 554 50 383 2.68e-81 259
Msa1094810 MtrunA17_Chr7g0268241 38.924 316 179 4 240 554 48 350 1.80e-68 224
Msa1094810 MtrunA17_Chr2g0334111 37.460 315 181 4 241 554 24 323 3.52e-66 218
Msa1094810 MtrunA17_Chr7g0271381 31.099 537 308 21 47 554 53 556 5.03e-60 208
Msa1094810 MtrunA17_Chr2g0299431 42.489 233 129 4 217 447 29 258 9.70e-49 170
Msa1094810 MtrunA17_Chr1g0194311 33.968 315 181 7 239 543 71 368 1.82e-48 172
Msa1094810 MtrunA17_Chr8g0391261 53.191 141 64 1 414 554 28 166 1.97e-47 162
Msa1094810 MtrunA17_Chr6g0453551 31.699 306 183 7 242 537 6 295 2.63e-47 167
Msa1094810 MtrunA17_Chr7g0258341 33.866 313 183 6 242 544 90 388 3.36e-47 169
Msa1094810 MtrunA17_Chr6g0487101 36.066 305 167 7 250 543 93 380 6.74e-46 166
Msa1094810 MtrunA17_Chr8g0389771 34.713 314 175 7 243 543 81 377 1.23e-43 159
Msa1094810 MtrunA17_Chr5g0446301 33.657 309 176 7 248 544 67 358 5.22e-42 154
Msa1094810 MtrunA17_Chr7g0217941 31.449 283 171 5 244 516 8 277 1.13e-41 152
Msa1094810 MtrunA17_Chr4g0070051 32.177 317 175 10 242 544 54 344 2.82e-41 152
Msa1094810 MtrunA17_Chr6g0466961 32.624 282 165 5 240 516 38 299 6.70e-41 150
Msa1094810 MtrunA17_Chr6g0466951 30.851 282 170 6 240 516 67 328 1.98e-39 147
Msa1094810 MtrunA17_Chr4g0037751 31.833 311 183 9 242 543 71 361 1.50e-37 142
Msa1094810 MtrunA17_Chr1g0161731 30.909 275 166 6 250 516 57 315 7.13e-37 140
Msa1094810 MtrunA17_Chr5g0420831 30.226 354 213 12 202 543 30 361 1.56e-35 137
Msa1094810 MtrunA17_Chr5g0399221 29.720 286 177 5 242 516 63 335 3.55e-35 135
Msa1094810 MtrunA17_Chr7g0234731 43.094 181 88 7 150 325 148 318 8.53e-33 127
Msa1094810 MtrunA17_Chr8g0391281 31.667 300 158 8 47 323 35 310 4.92e-32 125
Msa1094810 MtrunA17_Chr7g0265201 29.375 320 191 9 237 545 92 387 5.26e-32 127
Msa1094810 MtrunA17_Chr5g0440871 27.742 310 198 7 238 545 35 320 9.53e-30 119
Msa1094810 MtrunA17_Chr2g0294321 28.173 323 208 7 227 543 42 346 2.25e-28 116
Msa1094810 MtrunA17_Chr6g0459781 35.882 170 97 4 242 401 13 180 3.82e-26 106
Msa1094810 MtrunA17_Chr2g0314691 31.500 200 118 5 346 543 19 201 4.41e-25 103
Msa1094810 MtrunA17_Chr8g0351871 27.465 284 179 7 242 516 33 298 7.03e-25 105
Msa1094810 MtrunA17_Chr4g0025841 28.517 263 171 4 229 491 24 269 4.97e-24 101
Msa1094810 MtrunA17_Chr5g0437821 35.606 132 84 1 355 485 4 135 1.90e-23 96.3
Msa1094810 MtrunA17_Chr2g0295851 26.250 320 209 8 227 543 41 336 8.31e-22 97.1
Msa1094810 MtrunA17_Chr5g0440901 30.065 153 97 2 334 486 1 143 2.14e-19 85.1
Msa1094810 MtrunA17_Chr5g0440891 31.875 160 102 2 242 401 48 200 2.35e-17 80.9
Msa1094810 MtrunA17_Chr7g0265161 27.869 183 99 4 307 484 5 159 5.10e-17 80.9
Msa1094810 MtrunA17_Chr4g0073911 30.108 186 119 4 258 436 24 205 4.77e-16 78.2
Msa1094810 MtrunA17_Chr6g0459791 37.008 127 65 5 418 543 4 116 7.01e-16 74.3
Msa1094810 MtrunA17_Chr6g0460141 42.045 88 49 2 316 401 57 144 1.98e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094810 AT1G11580.1 57.016 563 222 8 3 554 4 557 0.0 617
Msa1094810 AT1G11580.2 57.016 563 222 8 3 554 25 578 0.0 616
Msa1094810 AT5G53370.1 47.468 474 229 7 97 554 116 585 7.18e-153 451
Msa1094810 AT5G53370.2 47.468 474 229 7 97 554 152 621 1.37e-152 451
Msa1094810 AT3G43270.1 46.531 490 223 9 87 554 53 525 7.34e-147 433
Msa1094810 AT3G49220.1 47.807 456 214 7 116 554 148 596 2.16e-146 434
Msa1094810 AT3G49220.3 47.807 456 214 7 116 554 193 641 7.54e-146 434
Msa1094810 AT3G14310.1 45.772 544 234 12 52 554 69 592 3.80e-144 429
Msa1094810 AT4G33220.1 48.602 465 207 9 117 554 64 523 1.00e-143 425
Msa1094810 AT1G53830.1 45.693 534 240 11 53 550 64 583 7.90e-142 422
Msa1094810 AT3G59010.1 50.442 452 184 10 120 554 100 528 1.63e-140 417
Msa1094810 AT2G45220.1 44.444 549 251 17 22 554 1 511 6.55e-138 410
Msa1094810 AT2G43050.1 48.090 445 197 10 120 554 96 516 3.71e-134 400
Msa1094810 AT3G60730.1 45.077 457 223 8 121 554 68 519 4.36e-133 397
Msa1094810 AT4G02320.1 44.027 452 229 6 115 550 71 514 2.03e-132 396
Msa1094810 AT4G33220.2 49.631 407 179 6 169 554 1 402 8.29e-132 390
Msa1094810 AT4G02300.1 44.812 453 224 7 118 554 90 532 6.99e-131 392
Msa1094810 AT1G11590.1 42.829 516 264 11 56 554 23 524 1.69e-129 389
Msa1094810 AT2G26440.1 40.848 519 288 7 49 554 35 547 2.71e-128 386
Msa1094810 AT3G05620.1 42.992 528 238 14 57 554 47 541 1.64e-127 384
Msa1094810 AT1G02810.1 40.317 568 263 13 48 554 25 577 5.97e-127 384
Msa1094810 AT5G04960.1 41.874 523 267 10 41 550 62 560 5.22e-126 381
Msa1094810 AT4G03930.1 41.426 519 267 12 56 554 23 524 7.21e-126 379
Msa1094810 AT5G27870.1 42.384 453 241 6 116 554 116 562 7.30e-126 386
Msa1094810 AT5G51490.1 47.805 410 197 6 153 554 136 536 8.28e-125 377
Msa1094810 AT4G02330.1 41.039 558 262 15 49 554 29 571 2.08e-124 377
Msa1094810 AT5G51500.1 45.434 449 226 7 117 554 100 540 1.91e-123 374
Msa1094810 AT3G27980.1 47.146 403 199 7 155 554 106 497 4.56e-123 371
Msa1094810 AT1G23200.1 40.135 593 266 17 7 554 6 554 1.66e-122 372
Msa1094810 AT2G47550.1 40.700 543 272 12 47 554 31 558 2.63e-121 369
Msa1094810 AT3G10710.1 39.729 516 277 9 50 554 69 561 7.53e-120 365
Msa1094810 AT3G47400.1 47.073 410 204 4 153 554 190 594 9.62e-120 366
Msa1094810 AT1G53840.1 39.388 523 272 11 54 548 76 581 1.06e-117 360
Msa1094810 AT3G05610.1 40.523 459 241 10 117 554 118 565 5.31e-117 361
Msa1094810 AT2G26450.1 38.058 515 290 12 54 554 112 611 7.27e-117 359
Msa1094810 AT4G33230.1 39.771 523 279 12 54 554 98 606 2.76e-114 352
Msa1094810 AT3G14300.1 40.606 495 266 9 63 540 471 954 2.09e-113 360
Msa1094810 AT5G49180.1 36.852 559 318 13 18 551 19 567 4.49e-112 345
Msa1094810 AT5G20860.2 42.247 445 228 9 123 554 110 538 2.85e-111 342
Msa1094810 AT4G00190.1 43.318 434 219 9 119 550 62 470 1.89e-110 338
Msa1094810 AT3G10720.2 39.919 496 233 9 111 554 133 615 5.95e-109 339
Msa1094810 AT5G04970.1 39.189 518 244 10 92 554 119 620 1.00e-108 338
Msa1094810 AT3G06830.1 39.648 454 235 11 120 550 127 564 1.30e-105 328
Msa1094810 AT1G11370.1 58.197 244 102 0 239 482 43 286 5.42e-103 312
Msa1094810 AT4G15980.1 43.467 375 204 5 181 550 327 698 4.84e-96 307
Msa1094810 AT4G15980.2 43.467 375 204 5 181 550 337 708 8.56e-96 307
Msa1094810 AT3G10720.1 53.817 262 118 2 293 554 1 259 3.90e-95 291
Msa1094810 AT5G20860.1 38.837 430 206 8 123 539 110 495 4.10e-90 286
Msa1094810 AT5G09760.1 36.468 521 275 18 55 542 49 546 3.56e-87 280
Msa1094810 AT5G09760.2 36.468 521 275 18 55 542 75 572 7.35e-87 280
Msa1094810 AT2G47030.1 34.369 547 302 14 40 554 67 588 2.48e-84 274
Msa1094810 AT2G47040.1 31.788 604 338 13 15 554 2 595 1.49e-83 272
Msa1094810 AT3G62170.1 35.811 444 232 8 157 554 152 588 7.29e-80 262
Msa1094810 AT5G64640.1 35.234 491 256 19 92 546 137 601 1.65e-78 259
Msa1094810 AT1G44980.1 43.043 230 125 4 180 406 16 242 4.50e-52 178
Msa1094810 AT1G05310.1 33.956 321 182 6 237 544 86 389 1.37e-47 171
Msa1094810 AT3G29090.1 32.281 285 170 4 242 516 7 278 2.66e-45 162
Msa1094810 AT5G19730.1 35.294 306 170 7 250 544 94 382 3.79e-44 161
Msa1094810 AT2G21610.1 31.803 305 184 7 242 544 51 333 5.94e-41 151
Msa1094810 AT2G21610.2 31.803 305 184 7 242 544 56 338 7.57e-41 151
Msa1094810 AT2G36710.1 30.408 319 199 7 239 548 86 390 9.55e-40 149
Msa1094810 AT2G36700.1 30.492 305 192 5 244 543 44 333 6.01e-38 143
Msa1094810 AT2G19150.1 30.606 330 197 8 232 550 31 339 4.65e-37 140
Msa1094810 AT5G07430.1 30.645 310 186 8 242 543 67 355 7.32e-37 140
Msa1094810 AT5G61680.1 29.379 354 213 11 203 543 29 358 8.18e-37 140
Msa1094810 AT5G55590.1 31.348 319 190 8 238 544 78 379 1.85e-36 140
Msa1094810 AT3G49220.2 34.874 238 130 7 116 336 193 422 1.15e-35 139
Msa1094810 AT5G07420.1 28.421 380 221 12 175 543 16 355 2.62e-35 136
Msa1094810 AT5G47500.1 28.115 313 198 6 242 543 61 357 9.32e-35 135
Msa1094810 AT5G55590.2 32.692 260 151 6 238 485 78 325 1.95e-34 133
Msa1094810 AT5G18990.1 30.070 286 174 6 242 516 29 299 1.08e-33 131
Msa1094810 AT1G69940.1 29.605 304 184 9 249 543 73 355 6.39e-33 129
Msa1094810 AT3G17060.1 28.435 313 193 8 241 543 45 336 1.17e-32 128
Msa1094810 AT3G24130.1 28.667 300 187 7 229 516 20 304 3.43e-32 127
Msa1094810 AT5G07410.1 29.276 304 185 9 249 543 73 355 4.33e-32 127
Msa1094810 AT2G19150.2 30.855 269 163 5 232 491 31 285 4.39e-32 125
Msa1094810 AT5G26810.1 26.608 342 208 7 230 545 11 335 3.55e-29 118
Msa1094810 AT2G47280.1 30.345 290 174 8 238 516 31 303 9.11e-28 114

Find 158 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTTAAAATCTCGTTTA+TGG 0.109922 7_3:-16882721 None:intergenic
ATCTCAGTTCTACACCTTTA+AGG 0.110217 7_3:+16880510 Msa1094810:five_prime_UTR
GGGCCGCAAGTTTGCTCTTC+TGG 0.178693 7_3:-16881979 None:intergenic
CTTGGACTTTCCCCGTAAAA+AGG 0.189139 7_3:+16882607 Msa1094810:three_prime_UTR
TTGGTTGGCCATGGGCTTTC+GGG 0.198914 7_3:-16881999 None:intergenic
GCAACTGCCTGGTGCTTCTC+TGG 0.201967 7_3:-16881803 None:intergenic
GGTACTGTTGACTTTATCTT+TGG 0.223151 7_3:+16881938 Msa1094810:CDS
TATTGAGATGAGAAATAATA+AGG 0.237023 7_3:-16880792 None:intergenic
ATCTCGTTTATGGATTAAAA+AGG 0.238524 7_3:-16882711 None:intergenic
GTATGTTATCTATGTGAAAA+AGG 0.250218 7_3:+16881500 Msa1094810:CDS
TACCGTGACTCCTACATTAC+TGG 0.252009 7_3:+16881917 Msa1094810:CDS
TGTAATCCTTATCTTCAAAA+AGG 0.253562 7_3:+16880581 Msa1094810:five_prime_UTR
TTTGGTTGGCCATGGGCTTT+CGG 0.255096 7_3:-16882000 None:intergenic
GAATGACTGTGAGGAATTAA+TGG 0.257485 7_3:+16881059 Msa1094810:CDS
TGTCGGTACACGCTTGTTAA+AGG 0.268262 7_3:-16882451 None:intergenic
TAATATATAAAACTGGGAAT+TGG 0.282352 7_3:-16882674 None:intergenic
TACAAAGAGAACGTAGAAAT+TGG 0.292611 7_3:+16881528 Msa1094810:CDS
TTTGAAACCATCTAATTATA+CGG 0.296188 7_3:-16882850 None:intergenic
ACTATTGTAATATATAAAAC+TGG 0.297927 7_3:-16882681 None:intergenic
TCTCTGGGCCTGCCGTGTTT+TGG 0.305136 7_3:-16881787 None:intergenic
TCCCATTCAGCCCATCCTGC+TGG 0.307590 7_3:-16882214 None:intergenic
ATTTGTCCATGGATAGAGTT+TGG 0.321286 7_3:+16881082 Msa1094810:CDS
GAGAGATTGAAGAAGGAGAT+AGG 0.326855 7_3:-16880817 None:intergenic
GGTTTATAGCTCAGGACATT+AGG 0.333498 7_3:+16881762 Msa1094810:CDS
GGCAGCTTAAATTTCATAGA+TGG 0.343017 7_3:+16881609 Msa1094810:CDS
TTCAGATCCGTATAATTAGA+TGG 0.349941 7_3:+16882843 Msa1094810:three_prime_UTR
GAAGTTGCGGTGTTCTGGTT+TGG 0.352786 7_3:-16882055 None:intergenic
TTGGCAGCTGGTGGTGGTAT+TGG 0.354386 7_3:-16880452 None:intergenic
AAGTTGCGGTGTTCTGGTTT+GGG 0.358889 7_3:-16882054 None:intergenic
GAATTGAAGTTGCGGTGTTC+TGG 0.361783 7_3:-16882060 None:intergenic
AAGTAAGGATCGAAGACTTT+TGG 0.362459 7_3:+16881365 Msa1094810:CDS
TGGCCAAGTCACTCTCTTAC+TGG 0.362968 7_3:-16882308 None:intergenic
AATATATAAAACTGGGAATT+GGG 0.367875 7_3:-16882673 None:intergenic
CGTTATGGAGAGTGATCTTC+AGG 0.379571 7_3:+16881227 Msa1094810:CDS
GAATGCCTCTTCTCTTCCCT+TGG 0.381587 7_3:+16882589 Msa1094810:three_prime_UTR
TTTGTCCATGGATAGAGTTT+GGG 0.389169 7_3:+16881083 Msa1094810:CDS
GTTTGGGTCTTCTCGACCTT+GGG 0.391160 7_3:-16882038 None:intergenic
TCGAATGTGTTCAGTCGATT+TGG 0.391545 7_3:-16880971 None:intergenic
AGGTTCATCTCGGGTCGTTA+TGG 0.406017 7_3:+16881212 Msa1094810:CDS
TTGTTAAAGGGCATTTCTAC+AGG 0.409969 7_3:-16882438 None:intergenic
TTTGTAGCTGCTGTTGGAGA+TGG 0.411988 7_3:+16881740 Msa1094810:intron
GGTTTGGGTCTTCTCGACCT+TGG 0.412575 7_3:-16882039 None:intergenic
AGCTCATCCAAGGTAATGTT+TGG 0.413571 7_3:+16882383 Msa1094810:CDS
GTCTTCAGTTGGGGACATAA+AGG 0.418020 7_3:+16881389 Msa1094810:CDS
CAACTGCCTGGTGCTTCTCT+GGG 0.418631 7_3:-16881802 None:intergenic
TACCTTGTCTTACCATTGTC+TGG 0.419460 7_3:-16881480 None:intergenic
TCCATCTTGGGTGACAAGTA+AGG 0.423120 7_3:+16881350 Msa1094810:CDS
ATGAATCCGTCATTAGCCTT+TGG 0.427354 7_3:-16881303 None:intergenic
TGAACACATTCGAAAGGTTA+TGG 0.427503 7_3:+16880981 Msa1094810:CDS
ACTTGCATGGATGGATTAGA+AGG 0.431235 7_3:+16881192 Msa1094810:CDS
TATCAATATTTCATAACTCT+TGG 0.439050 7_3:-16880471 None:intergenic
TAACTCTTGGCAGCTGGTGG+TGG 0.440778 7_3:-16880458 None:intergenic
GAATCTGAATCTAAATTGTC+AGG 0.441322 7_3:-16882823 None:intergenic
GGCCAATGTTGTGGTGGCTC+AGG 0.444253 7_3:+16881410 Msa1094810:CDS
ACCCAGCAGGATGGGCTGAA+TGG 0.448106 7_3:+16882212 Msa1094810:CDS
TGAATGGGATGCCGCGAGTA+AGG 0.450233 7_3:+16882228 Msa1094810:CDS
AGTAGTCACTAGTATCAGTA+TGG 0.452371 7_3:+16880675 Msa1094810:exon
GGAATTGGGAAGCACATGAT+AGG 0.453664 7_3:-16882659 None:intergenic
GCTTGTCTAGCAAAGATTGT+TGG 0.453804 7_3:-16880702 None:intergenic
CCCATTCAGCCCATCCTGCT+GGG 0.455581 7_3:-16882213 None:intergenic
TTTCTACAGGCCTTCAATGA+AGG 0.457490 7_3:-16882425 None:intergenic
TGGAGATGGGTTTATAGCTC+AGG 0.458718 7_3:+16881754 Msa1094810:CDS
TCCACCTGTGTTAAAAGTAC+CGG 0.461418 7_3:-16882757 None:intergenic
GTCGGTACACGCTTGTTAAA+GGG 0.462757 7_3:-16882450 None:intergenic
AGAGCATGCTCACACAGATT+AGG 0.468844 7_3:-16880847 None:intergenic
TTGTAGCTGCTGTTGGAGAT+GGG 0.474986 7_3:+16881741 Msa1094810:intron
AGAATGATGAAGGAATTTAC+CGG 0.476263 7_3:+16882738 Msa1094810:three_prime_UTR
ACAGGGGTGGCCTTCATTGA+AGG 0.476471 7_3:+16882415 Msa1094810:CDS
AACCATGCAACTTGCATGGA+TGG 0.477170 7_3:+16881183 Msa1094810:CDS
TCCTTACTTGTCACCCAAGA+TGG 0.477577 7_3:-16881351 None:intergenic
TATAATTAGATGGTTTCAAA+GGG 0.479278 7_3:+16882853 Msa1094810:three_prime_UTR
ATACGAGTGTACTCAATTTG+TGG 0.481141 7_3:-16880939 None:intergenic
CCCAGCAGGATGGGCTGAAT+GGG 0.483146 7_3:+16882213 Msa1094810:CDS
CCACATTGACCCAGCAGGAT+GGG 0.483548 7_3:+16882204 Msa1094810:CDS
GATGCTAGTGGGTGATGGTA+TGG 0.484075 7_3:+16881569 Msa1094810:CDS
TGTTTCTGTCTTGCCTCCAA+AGG 0.485356 7_3:+16881287 Msa1094810:CDS
AGCTGAGGAGAGATTGAAGA+AGG 0.490290 7_3:-16880824 None:intergenic
ATTGAGATGAGAAATAATAA+GGG 0.504890 7_3:-16880791 None:intergenic
ATTTCATAACTCTTGGCAGC+TGG 0.505318 7_3:-16880464 None:intergenic
AGCAAGAGAAGATCTAGCTC+TGG 0.511726 7_3:-16881259 None:intergenic
CCTCTCTAGGGCTATTAACA+CGG 0.513251 7_3:-16881026 None:intergenic
CACTAACCATGCAACTTGCA+TGG 0.515066 7_3:+16881179 Msa1094810:CDS
GAGTACATGAACAGTGGAGC+AGG 0.516556 7_3:+16882277 Msa1094810:CDS
AATCCGTCATTAGCCTTTGG+AGG 0.516912 7_3:-16881300 None:intergenic
GTATAATTAGATGGTTTCAA+AGG 0.517535 7_3:+16882852 Msa1094810:three_prime_UTR
ATGTTGTGGTGGCTCAGGAC+GGG 0.518219 7_3:+16881415 Msa1094810:CDS
AGGAGCCTTGCACAGGCTTG+AGG 0.521239 7_3:-16882111 None:intergenic
TCTTCAACCAAACATTACCT+TGG 0.521933 7_3:-16882390 None:intergenic
CATGTATCAGAAGTGGTTCA+AGG 0.525478 7_3:+16880892 Msa1094810:CDS
GTCCTGGAGTATTTCTTCCA+TGG 0.530775 7_3:-16882154 None:intergenic
CGACACGAAGAGCAACTGCC+TGG 0.534343 7_3:-16881814 None:intergenic
GGAATTAATGGATTTGTCCA+TGG 0.534928 7_3:+16881071 Msa1094810:CDS
TCATAACTCTTGGCAGCTGG+TGG 0.535484 7_3:-16880461 None:intergenic
AAACATACCTAGGTCGTCCA+TGG 0.540989 7_3:+16882137 Msa1094810:CDS
AGACTGCAACACAACAGTCC+TGG 0.542128 7_3:-16882170 None:intergenic
TAGTGACTACTGACTAGTAC+TGG 0.542643 7_3:-16880663 None:intergenic
GCCACATTGACCCAGCAGGA+TGG 0.543084 7_3:+16882203 Msa1094810:CDS
ACAGGCTTGAGGTCTGAGCT+TGG 0.544567 7_3:-16882100 None:intergenic
AGGAGTCACGGTAAAATTGT+CGG 0.546069 7_3:-16881907 None:intergenic
AGTAAGAGAGTGACTTGGCC+AGG 0.548780 7_3:+16882310 Msa1094810:CDS
AATGTTGTGGTGGCTCAGGA+CGG 0.552902 7_3:+16881414 Msa1094810:CDS
CAGGCAGTTGCTCTTCGTGT+CGG 0.553277 7_3:+16881815 Msa1094810:CDS
GTCAACAGTACCAGTAATGT+AGG 0.556514 7_3:-16881927 None:intergenic
ATGAACAGTGGAGCAGGTGC+TGG 0.557932 7_3:+16882283 Msa1094810:CDS
GTGGTGGCTCAGGACGGGAG+CGG 0.558457 7_3:+16881420 Msa1094810:CDS
CTTAACTCATGTATCAGAAG+TGG 0.560141 7_3:+16880885 Msa1094810:CDS
ACTTGCGGCCCGAAAGCCCA+TGG 0.571952 7_3:+16881991 Msa1094810:CDS
TGGATTAGAAGGTTCATCTC+GGG 0.573944 7_3:+16881203 Msa1094810:CDS
AATGTTTGGTTGAAGAACAC+AGG 0.574848 7_3:+16882397 Msa1094810:CDS
TGAGGCCCAAACTCTATCCA+TGG 0.582316 7_3:-16881088 None:intergenic
ATTTCTTCCATGGACGACCT+AGG 0.583235 7_3:-16882144 None:intergenic
GTGTTGCAGTCTGTCGTGGA+CGG 0.584334 7_3:+16882181 Msa1094810:CDS
CTATTGTAATATATAAAACT+GGG 0.584558 7_3:-16882680 None:intergenic
TCAGACCTCAAGCCTGTGCA+AGG 0.586718 7_3:+16882106 Msa1094810:CDS
GGCAGGCCCAGAGAAGCACC+AGG 0.587751 7_3:+16881796 Msa1094810:CDS
GTCCTGAGCCACCACAACAT+TGG 0.587886 7_3:-16881412 None:intergenic
ATGGATTAGAAGGTTCATCT+CGG 0.591723 7_3:+16881202 Msa1094810:CDS
ATCCATCCATGCAAGTTGCA+TGG 0.594211 7_3:-16881185 None:intergenic
GTCACGGTAAAATTGTCGGT+TGG 0.595963 7_3:-16881903 None:intergenic
CACAGCATGATGCACACACA+TGG 0.596185 7_3:+16881142 Msa1094810:CDS
GTCCATGGAAGAAATACTCC+AGG 0.599829 7_3:+16882152 Msa1094810:CDS
ATGGATGCAACAATAATCAC+AGG 0.600200 7_3:+16881588 Msa1094810:CDS
GACGGCCACATTGACCCAGC+AGG 0.601091 7_3:+16882199 Msa1094810:CDS
TGTTGTGTTGCAGTCTGTCG+TGG 0.601440 7_3:+16882177 Msa1094810:CDS
TACAAATTCAATTACACACG+TGG 0.606455 7_3:-16880562 None:intergenic
GTTGCATCTGCACCAGACAA+TGG 0.606959 7_3:+16881468 Msa1094810:CDS
ATTAGGTTCCAAAACACGGC+AGG 0.609954 7_3:+16881779 Msa1094810:CDS
CATAAAGGCCAATGTTGTGG+TGG 0.610350 7_3:+16881404 Msa1094810:CDS
TACCAGTAATGTAGGAGTCA+CGG 0.612605 7_3:-16881919 None:intergenic
ACCTTCAAAAGTGCAACTGT+TGG 0.614293 7_3:+16881639 Msa1094810:CDS
GGACATTAGGTTCCAAAACA+CGG 0.614792 7_3:+16881775 Msa1094810:CDS
AAAGTCCAAGGGAAGAGAAG+AGG 0.615801 7_3:-16882594 None:intergenic
CCCATCCTGCTGGGTCAATG+TGG 0.616266 7_3:-16882204 None:intergenic
ATCGACTGAACACATTCGAA+AGG 0.619793 7_3:+16880975 Msa1094810:CDS
TTGCCTCCAAAGGCTAATGA+CGG 0.622452 7_3:+16881297 Msa1094810:CDS
ATGTTTGGTTGAAGAACACA+GGG 0.623634 7_3:+16882398 Msa1094810:CDS
GGCTCCTTCAAAACATACCT+AGG 0.625221 7_3:+16882127 Msa1094810:CDS
ACAGTAACACAGCTCATCCA+AGG 0.626719 7_3:+16882373 Msa1094810:CDS
CATTCGAAAGGTTATGGACA+CGG 0.627141 7_3:+16880987 Msa1094810:CDS
CACCAGACAATGGTAAGACA+AGG 0.628353 7_3:+16881478 Msa1094810:CDS
AATGTGATGCTAGTGGGTGA+TGG 0.631271 7_3:+16881564 Msa1094810:CDS
CTCACACAGATTAGGAGCTG+AGG 0.634824 7_3:-16880839 None:intergenic
GGACATAAAGGCCAATGTTG+TGG 0.635004 7_3:+16881401 Msa1094810:CDS
CCGTGTTAATAGCCCTAGAG+AGG 0.641594 7_3:+16881026 Msa1094810:CDS
TTTGGTTAGAATCAATACTG+AGG 0.642368 7_3:-16881106 None:intergenic
GTTCCAGAAGAGCAAACTTG+CGG 0.644707 7_3:+16881976 Msa1094810:CDS
AAGACGAATGTGATGCTAGT+GGG 0.651085 7_3:+16881558 Msa1094810:CDS
TTATGATAGCAACTAAAGAG+AGG 0.656577 7_3:-16880759 None:intergenic
GCAAAACGTCTGAAACATGT+CGG 0.668230 7_3:-16882468 None:intergenic
TATGGAGAGTACATGAACAG+TGG 0.671646 7_3:+16882271 Msa1094810:CDS
GTACCAGTAAGAGAGTGACT+TGG 0.674376 7_3:+16882305 Msa1094810:CDS
ACATTGCTGAATTGAAGTTG+CGG 0.677232 7_3:-16882068 None:intergenic
TTGGTTGAAGAACACAGGGG+TGG 0.685455 7_3:+16882402 Msa1094810:CDS
TACAACACGTCTGAAACATG+AGG 0.689827 7_3:-16882564 None:intergenic
GAGCGGCAAGTTCAAGACTG+TGG 0.711595 7_3:+16881437 Msa1094810:CDS
AAAGACGAATGTGATGCTAG+TGG 0.714733 7_3:+16881557 Msa1094810:CDS
AAATGCTTTGAATGACTGTG+AGG 0.716518 7_3:+16881050 Msa1094810:CDS
TGTTTGGTTGAAGAACACAG+GGG 0.876010 7_3:+16882399 Msa1094810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTGATGTATAATT+TGG + chr7_3:16881716-16881735 Msa1094810:intron 10.0%
!! CTATTGTAATATATAAAACT+GGG - chr7_3:16882683-16882702 None:intergenic 15.0%
!! ACTATTGTAATATATAAAAC+TGG - chr7_3:16882684-16882703 None:intergenic 15.0%
!! TATCAATATTTCATAACTCT+TGG - chr7_3:16880474-16880493 None:intergenic 20.0%
!!! AATATTCCTTTTTGAAGATA+AGG - chr7_3:16880590-16880609 None:intergenic 20.0%
!! ATTGAGATGAGAAATAATAA+GGG - chr7_3:16880794-16880813 None:intergenic 20.0%
!! TATTGAGATGAGAAATAATA+AGG - chr7_3:16880795-16880814 None:intergenic 20.0%
!! TTCATTGATGAAAAATTGAA+TGG + chr7_3:16881321-16881340 Msa1094810:CDS 20.0%
!! TATGTTATCTATGTGAAAAA+GGG + chr7_3:16881501-16881520 Msa1094810:CDS 20.0%
!!! TTTTTGCAAACATTGTATTA+TGG + chr7_3:16882253-16882272 Msa1094810:CDS 20.0%
!!! TTTTTTATGATATGATAACC+TGG - chr7_3:16882331-16882350 None:intergenic 20.0%
!!! AAATTAAATTCCCTTTTTAC+GGG - chr7_3:16882621-16882640 None:intergenic 20.0%
!!! GAAATTAAATTCCCTTTTTA+CGG - chr7_3:16882622-16882641 None:intergenic 20.0%
!! AATATATAAAACTGGGAATT+GGG - chr7_3:16882676-16882695 None:intergenic 20.0%
!! TAATATATAAAACTGGGAAT+TGG - chr7_3:16882677-16882696 None:intergenic 20.0%
!!! TTTGAAACCATCTAATTATA+CGG - chr7_3:16882853-16882872 None:intergenic 20.0%
!! TATAATTAGATGGTTTCAAA+GGG + chr7_3:16882853-16882872 Msa1094810:three_prime_UTR 20.0%
! TGTAATCCTTATCTTCAAAA+AGG + chr7_3:16880581-16880600 Msa1094810:five_prime_UTR 25.0%
!!! GTTTTTGGAATGGATTTTTT+TGG - chr7_3:16880727-16880746 None:intergenic 25.0%
!! AATCCATTCCAAAAACATTT+TGG + chr7_3:16880731-16880750 Msa1094810:CDS 25.0%
!!! TAACCAAAATGTTTTTGGAA+TGG - chr7_3:16880737-16880756 None:intergenic 25.0%
!! AGGATTAACCAAAATGTTTT+TGG - chr7_3:16880742-16880761 None:intergenic 25.0%
! GTATGTTATCTATGTGAAAA+AGG + chr7_3:16881500-16881519 Msa1094810:CDS 25.0%
! AATGGTAAATACAGAAAAGA+GGG - chr7_3:16881676-16881695 None:intergenic 25.0%
! AAATGGTAAATACAGAAAAG+AGG - chr7_3:16881677-16881696 None:intergenic 25.0%
!! GAAAAACTATGCTTTATTGT+AGG + chr7_3:16882504-16882523 Msa1094810:three_prime_UTR 25.0%
!! AATTAAATTCCCTTTTTACG+GGG - chr7_3:16882620-16882639 None:intergenic 25.0%
!! ATCTCGTTTATGGATTAAAA+AGG - chr7_3:16882714-16882733 None:intergenic 25.0%
! CATTCTTAAAATCTCGTTTA+TGG - chr7_3:16882724-16882743 None:intergenic 25.0%
! GTATAATTAGATGGTTTCAA+AGG + chr7_3:16882852-16882871 Msa1094810:three_prime_UTR 25.0%
! ACAATTCTTTTGCACCTTAA+AGG - chr7_3:16880527-16880546 None:intergenic 30.0%
TACAAATTCAATTACACACG+TGG - chr7_3:16880565-16880584 None:intergenic 30.0%
TTATGATAGCAACTAAAGAG+AGG - chr7_3:16880762-16880781 None:intergenic 30.0%
TTTGGTTAGAATCAATACTG+AGG - chr7_3:16881109-16881128 None:intergenic 30.0%
!!! CTGTGAGTCAATGTTATTTT+TGG - chr7_3:16881127-16881146 None:intergenic 30.0%
TACAAAGAGAACGTAGAAAT+TGG + chr7_3:16881528-16881547 Msa1094810:CDS 30.0%
AAATCACTGTCATAGAGAAA+TGG - chr7_3:16881700-16881719 None:intergenic 30.0%
TATCATAAAAAATGCTGCTG+AGG + chr7_3:16882339-16882358 Msa1094810:CDS 30.0%
!! CGAGATTTTAAGAATGATGA+AGG + chr7_3:16882728-16882747 Msa1094810:three_prime_UTR 30.0%
AGAATGATGAAGGAATTTAC+CGG + chr7_3:16882738-16882757 Msa1094810:three_prime_UTR 30.0%
GAATCTGAATCTAAATTGTC+AGG - chr7_3:16882826-16882845 None:intergenic 30.0%
TTCAGATCCGTATAATTAGA+TGG + chr7_3:16882843-16882862 Msa1094810:three_prime_UTR 30.0%
ATCTCAGTTCTACACCTTTA+AGG + chr7_3:16880510-16880529 Msa1094810:five_prime_UTR 35.0%
AGTAGTCACTAGTATCAGTA+TGG + chr7_3:16880675-16880694 Msa1094810:exon 35.0%
CTTAACTCATGTATCAGAAG+TGG + chr7_3:16880885-16880904 Msa1094810:CDS 35.0%
! CAATTTGTGGTCTTTTGTGT+TGG - chr7_3:16880929-16880948 None:intergenic 35.0%
ATACGAGTGTACTCAATTTG+TGG - chr7_3:16880942-16880961 None:intergenic 35.0%
TGAACACATTCGAAAGGTTA+TGG + chr7_3:16880981-16881000 Msa1094810:CDS 35.0%
!! TCAAAGCATTTTCCTCTCTA+GGG - chr7_3:16881041-16881060 None:intergenic 35.0%
!! TTCAAAGCATTTTCCTCTCT+AGG - chr7_3:16881042-16881061 None:intergenic 35.0%
! AAATGCTTTGAATGACTGTG+AGG + chr7_3:16881050-16881069 Msa1094810:CDS 35.0%
GAATGACTGTGAGGAATTAA+TGG + chr7_3:16881059-16881078 Msa1094810:CDS 35.0%
!! GGAATTAATGGATTTGTCCA+TGG + chr7_3:16881071-16881090 Msa1094810:CDS 35.0%
ATTTGTCCATGGATAGAGTT+TGG + chr7_3:16881082-16881101 Msa1094810:CDS 35.0%
TTTGTCCATGGATAGAGTTT+GGG + chr7_3:16881083-16881102 Msa1094810:CDS 35.0%
!! ATGGATTAGAAGGTTCATCT+CGG + chr7_3:16881202-16881221 Msa1094810:CDS 35.0%
! AAGTAAGGATCGAAGACTTT+TGG + chr7_3:16881365-16881384 Msa1094810:CDS 35.0%
ATGGATGCAACAATAATCAC+AGG + chr7_3:16881588-16881607 Msa1094810:CDS 35.0%
GGCAGCTTAAATTTCATAGA+TGG + chr7_3:16881609-16881628 Msa1094810:CDS 35.0%
CTGTCATAGAGAAATGGAAA+TGG - chr7_3:16881694-16881713 None:intergenic 35.0%
! AATTTTGCAGCGGTTAATGA+CGG - chr7_3:16881852-16881871 None:intergenic 35.0%
! GAAATGCATCAATTTTGCAG+CGG - chr7_3:16881862-16881881 None:intergenic 35.0%
!! GGTACTGTTGACTTTATCTT+TGG + chr7_3:16881938-16881957 Msa1094810:CDS 35.0%
!!! ATGTTTTTTTGGTTGGCCAT+GGG - chr7_3:16882010-16882029 None:intergenic 35.0%
!!! AGTGACCATGTTTTTTTGGT+TGG - chr7_3:16882017-16882036 None:intergenic 35.0%
ACATTGCTGAATTGAAGTTG+CGG - chr7_3:16882071-16882090 None:intergenic 35.0%
TCTTCAACCAAACATTACCT+TGG - chr7_3:16882393-16882412 None:intergenic 35.0%
AATGTTTGGTTGAAGAACAC+AGG + chr7_3:16882397-16882416 Msa1094810:CDS 35.0%
ATGTTTGGTTGAAGAACACA+GGG + chr7_3:16882398-16882417 Msa1094810:CDS 35.0%
!! TTGTTAAAGGGCATTTCTAC+AGG - chr7_3:16882441-16882460 None:intergenic 35.0%
! TTTACCGGTACTTTTAACAC+AGG + chr7_3:16882753-16882772 Msa1094810:three_prime_UTR 35.0%
ATTTCATAACTCTTGGCAGC+TGG - chr7_3:16880467-16880486 None:intergenic 40.0%
! TAGTGACTACTGACTAGTAC+TGG - chr7_3:16880666-16880685 None:intergenic 40.0%
GCTTGTCTAGCAAAGATTGT+TGG - chr7_3:16880705-16880724 None:intergenic 40.0%
GAGAGATTGAAGAAGGAGAT+AGG - chr7_3:16880820-16880839 None:intergenic 40.0%
CATGTATCAGAAGTGGTTCA+AGG + chr7_3:16880892-16880911 Msa1094810:CDS 40.0%
TCGAATGTGTTCAGTCGATT+TGG - chr7_3:16880974-16880993 None:intergenic 40.0%
ATCGACTGAACACATTCGAA+AGG + chr7_3:16880975-16880994 Msa1094810:CDS 40.0%
CATTCGAAAGGTTATGGACA+CGG + chr7_3:16880987-16881006 Msa1094810:CDS 40.0%
!! ACTTGCATGGATGGATTAGA+AGG + chr7_3:16881192-16881211 Msa1094810:CDS 40.0%
! TGGATTAGAAGGTTCATCTC+GGG + chr7_3:16881203-16881222 Msa1094810:CDS 40.0%
!! ATGAATCCGTCATTAGCCTT+TGG - chr7_3:16881306-16881325 None:intergenic 40.0%
! TGAATGGCGATTTTCCATCT+TGG + chr7_3:16881337-16881356 Msa1094810:CDS 40.0%
! GAATGGCGATTTTCCATCTT+GGG + chr7_3:16881338-16881357 Msa1094810:CDS 40.0%
!!! AGACTTTTGGAGTCTTCAGT+TGG + chr7_3:16881378-16881397 Msa1094810:CDS 40.0%
!!! GACTTTTGGAGTCTTCAGTT+GGG + chr7_3:16881379-16881398 Msa1094810:CDS 40.0%
!!! ACTTTTGGAGTCTTCAGTTG+GGG + chr7_3:16881380-16881399 Msa1094810:CDS 40.0%
TACCTTGTCTTACCATTGTC+TGG - chr7_3:16881483-16881502 None:intergenic 40.0%
AAAGACGAATGTGATGCTAG+TGG + chr7_3:16881557-16881576 Msa1094810:CDS 40.0%
AAGACGAATGTGATGCTAGT+GGG + chr7_3:16881558-16881577 Msa1094810:CDS 40.0%
!! AACAGTTGCACTTTTGAAGG+TGG - chr7_3:16881640-16881659 None:intergenic 40.0%
! ACCTTCAAAAGTGCAACTGT+TGG + chr7_3:16881639-16881658 Msa1094810:CDS 40.0%
! ACCAACAGTTGCACTTTTGA+AGG - chr7_3:16881643-16881662 None:intergenic 40.0%
!!! TTTGGTTTTGTAGCTGCTGT+TGG + chr7_3:16881734-16881753 Msa1094810:intron 40.0%
GGTTTATAGCTCAGGACATT+AGG + chr7_3:16881762-16881781 Msa1094810:CDS 40.0%
GGACATTAGGTTCCAAAACA+CGG + chr7_3:16881775-16881794 Msa1094810:CDS 40.0%
AGGAGTCACGGTAAAATTGT+CGG - chr7_3:16881910-16881929 None:intergenic 40.0%
TACCAGTAATGTAGGAGTCA+CGG - chr7_3:16881922-16881941 None:intergenic 40.0%
GTCAACAGTACCAGTAATGT+AGG - chr7_3:16881930-16881949 None:intergenic 40.0%
!!! CATGTTTTTTTGGTTGGCCA+TGG - chr7_3:16882011-16882030 None:intergenic 40.0%
CATGGCCAACCAAAAAAACA+TGG + chr7_3:16882009-16882028 Msa1094810:CDS 40.0%
!! ACGACCTAGGTATGTTTTGA+AGG - chr7_3:16882134-16882153 None:intergenic 40.0%
TTGCAAAAAGTCCTTACTCG+CGG - chr7_3:16882242-16882261 None:intergenic 40.0%
! TATGGAGAGTACATGAACAG+TGG + chr7_3:16882271-16882290 Msa1094810:CDS 40.0%
AGCTCATCCAAGGTAATGTT+TGG + chr7_3:16882383-16882402 Msa1094810:CDS 40.0%
TGTTTGGTTGAAGAACACAG+GGG + chr7_3:16882399-16882418 Msa1094810:CDS 40.0%
TTTCTACAGGCCTTCAATGA+AGG - chr7_3:16882428-16882447 None:intergenic 40.0%
! GCAAAACGTCTGAAACATGT+CGG - chr7_3:16882471-16882490 None:intergenic 40.0%
! ACATGTTTCAGACGTTTTGC+AGG + chr7_3:16882471-16882490 Msa1094810:three_prime_UTR 40.0%
! TACAACACGTCTGAAACATG+AGG - chr7_3:16882567-16882586 None:intergenic 40.0%
! TTTTTACGGGGAAAGTCCAA+GGG - chr7_3:16882608-16882627 None:intergenic 40.0%
TTGGACTTTCCCCGTAAAAA+GGG + chr7_3:16882608-16882627 Msa1094810:three_prime_UTR 40.0%
! TCCACCTGTGTTAAAAGTAC+CGG - chr7_3:16882760-16882779 None:intergenic 40.0%
AGCTGAGGAGAGATTGAAGA+AGG - chr7_3:16880827-16880846 None:intergenic 45.0%
AGAGCATGCTCACACAGATT+AGG - chr7_3:16880850-16880869 None:intergenic 45.0%
! GTGGTCTTTTGTGTTGGACA+AGG - chr7_3:16880923-16880942 None:intergenic 45.0%
!! CCTCTCTAGGGCTATTAACA+CGG - chr7_3:16881029-16881048 None:intergenic 45.0%
CACTAACCATGCAACTTGCA+TGG + chr7_3:16881179-16881198 Msa1094810:CDS 45.0%
AACCATGCAACTTGCATGGA+TGG + chr7_3:16881183-16881202 Msa1094810:CDS 45.0%
ATCCATCCATGCAAGTTGCA+TGG - chr7_3:16881188-16881207 None:intergenic 45.0%
CGTTATGGAGAGTGATCTTC+AGG + chr7_3:16881227-16881246 Msa1094810:CDS 45.0%
! AGCAAGAGAAGATCTAGCTC+TGG - chr7_3:16881262-16881281 None:intergenic 45.0%
! TGTTTCTGTCTTGCCTCCAA+AGG + chr7_3:16881287-16881306 Msa1094810:CDS 45.0%
TTGCCTCCAAAGGCTAATGA+CGG + chr7_3:16881297-16881316 Msa1094810:CDS 45.0%
!! AATCCGTCATTAGCCTTTGG+AGG - chr7_3:16881303-16881322 None:intergenic 45.0%
TCCATCTTGGGTGACAAGTA+AGG + chr7_3:16881350-16881369 Msa1094810:CDS 45.0%
TCCTTACTTGTCACCCAAGA+TGG - chr7_3:16881354-16881373 None:intergenic 45.0%
GTCTTCAGTTGGGGACATAA+AGG + chr7_3:16881389-16881408 Msa1094810:CDS 45.0%
GGACATAAAGGCCAATGTTG+TGG + chr7_3:16881401-16881420 Msa1094810:CDS 45.0%
CATAAAGGCCAATGTTGTGG+TGG + chr7_3:16881404-16881423 Msa1094810:CDS 45.0%
CACCAGACAATGGTAAGACA+AGG + chr7_3:16881478-16881497 Msa1094810:CDS 45.0%
! AATGTGATGCTAGTGGGTGA+TGG + chr7_3:16881564-16881583 Msa1094810:CDS 45.0%
TTTGTAGCTGCTGTTGGAGA+TGG + chr7_3:16881740-16881759 Msa1094810:intron 45.0%
TTGTAGCTGCTGTTGGAGAT+GGG + chr7_3:16881741-16881760 Msa1094810:intron 45.0%
! TGGAGATGGGTTTATAGCTC+AGG + chr7_3:16881754-16881773 Msa1094810:CDS 45.0%
ATTAGGTTCCAAAACACGGC+AGG + chr7_3:16881779-16881798 Msa1094810:CDS 45.0%
GTCACGGTAAAATTGTCGGT+TGG - chr7_3:16881906-16881925 None:intergenic 45.0%
TACCGTGACTCCTACATTAC+TGG + chr7_3:16881917-16881936 Msa1094810:CDS 45.0%
GTTCCAGAAGAGCAAACTTG+CGG + chr7_3:16881976-16881995 Msa1094810:CDS 45.0%
!!! GGGCAGTGACCATGTTTTTT+TGG - chr7_3:16882021-16882040 None:intergenic 45.0%
AAAAACATGGTCACTGCCCA+AGG + chr7_3:16882022-16882041 Msa1094810:CDS 45.0%
!! AAGTTGCGGTGTTCTGGTTT+GGG - chr7_3:16882057-16882076 None:intergenic 45.0%
GAATTGAAGTTGCGGTGTTC+TGG - chr7_3:16882063-16882082 None:intergenic 45.0%
GGCTCCTTCAAAACATACCT+AGG + chr7_3:16882127-16882146 Msa1094810:CDS 45.0%
AAACATACCTAGGTCGTCCA+TGG + chr7_3:16882137-16882156 Msa1094810:CDS 45.0%
ATTTCTTCCATGGACGACCT+AGG - chr7_3:16882147-16882166 None:intergenic 45.0%
GTCCATGGAAGAAATACTCC+AGG + chr7_3:16882152-16882171 Msa1094810:CDS 45.0%
! GTCCTGGAGTATTTCTTCCA+TGG - chr7_3:16882157-16882176 None:intergenic 45.0%
GTACCAGTAAGAGAGTGACT+TGG + chr7_3:16882305-16882324 Msa1094810:CDS 45.0%
ACAGTAACACAGCTCATCCA+AGG + chr7_3:16882373-16882392 Msa1094810:CDS 45.0%
! GTCGGTACACGCTTGTTAAA+GGG - chr7_3:16882453-16882472 None:intergenic 45.0%
! TGTCGGTACACGCTTGTTAA+AGG - chr7_3:16882454-16882473 None:intergenic 45.0%
AAAGTCCAAGGGAAGAGAAG+AGG - chr7_3:16882597-16882616 None:intergenic 45.0%
! CTTTTTACGGGGAAAGTCCA+AGG - chr7_3:16882609-16882628 None:intergenic 45.0%
CTTGGACTTTCCCCGTAAAA+AGG + chr7_3:16882607-16882626 Msa1094810:three_prime_UTR 45.0%
! GGAATTGGGAAGCACATGAT+AGG - chr7_3:16882662-16882681 None:intergenic 45.0%
! ACCGGTACTTTTAACACAGG+TGG + chr7_3:16882756-16882775 Msa1094810:three_prime_UTR 45.0%
TCATAACTCTTGGCAGCTGG+TGG - chr7_3:16880464-16880483 None:intergenic 50.0%
CTCACACAGATTAGGAGCTG+AGG - chr7_3:16880842-16880861 None:intergenic 50.0%
CCGTGTTAATAGCCCTAGAG+AGG + chr7_3:16881026-16881045 Msa1094810:CDS 50.0%
TGAGGCCCAAACTCTATCCA+TGG - chr7_3:16881091-16881110 None:intergenic 50.0%
CACAGCATGATGCACACACA+TGG + chr7_3:16881142-16881161 Msa1094810:CDS 50.0%
AGGTTCATCTCGGGTCGTTA+TGG + chr7_3:16881212-16881231 Msa1094810:CDS 50.0%
AATGTTGTGGTGGCTCAGGA+CGG + chr7_3:16881414-16881433 Msa1094810:CDS 50.0%
GTTGCATCTGCACCAGACAA+TGG + chr7_3:16881468-16881487 Msa1094810:CDS 50.0%
! GATGCTAGTGGGTGATGGTA+TGG + chr7_3:16881569-16881588 Msa1094810:CDS 50.0%
! TTTGGTTGGCCATGGGCTTT+CGG - chr7_3:16882003-16882022 None:intergenic 50.0%
GTTTGGGTCTTCTCGACCTT+GGG - chr7_3:16882041-16882060 None:intergenic 50.0%
! GAAGTTGCGGTGTTCTGGTT+TGG - chr7_3:16882058-16882077 None:intergenic 50.0%
!!! GTTTTGAAGGAGCCTTGCAC+AGG - chr7_3:16882121-16882140 None:intergenic 50.0%
AGACTGCAACACAACAGTCC+TGG - chr7_3:16882173-16882192 None:intergenic 50.0%
TGTTGTGTTGCAGTCTGTCG+TGG + chr7_3:16882177-16882196 Msa1094810:CDS 50.0%
GAGTACATGAACAGTGGAGC+AGG + chr7_3:16882277-16882296 Msa1094810:CDS 50.0%
TGGCCAAGTCACTCTCTTAC+TGG - chr7_3:16882311-16882330 None:intergenic 50.0%
! AGTAAGAGAGTGACTTGGCC+AGG + chr7_3:16882310-16882329 Msa1094810:CDS 50.0%
TTGGTTGAAGAACACAGGGG+TGG + chr7_3:16882402-16882421 Msa1094810:CDS 50.0%
GAATGCCTCTTCTCTTCCCT+TGG + chr7_3:16882589-16882608 Msa1094810:three_prime_UTR 50.0%
!! TTGGCAGCTGGTGGTGGTAT+TGG - chr7_3:16880455-16880474 None:intergenic 55.0%
TAACTCTTGGCAGCTGGTGG+TGG - chr7_3:16880461-16880480 None:intergenic 55.0%
GTCCTGAGCCACCACAACAT+TGG - chr7_3:16881415-16881434 None:intergenic 55.0%
ATGTTGTGGTGGCTCAGGAC+GGG + chr7_3:16881415-16881434 Msa1094810:CDS 55.0%
GAGCGGCAAGTTCAAGACTG+TGG + chr7_3:16881437-16881456 Msa1094810:CDS 55.0%
CAACTGCCTGGTGCTTCTCT+GGG - chr7_3:16881805-16881824 None:intergenic 55.0%
CAGGCAGTTGCTCTTCGTGT+CGG + chr7_3:16881815-16881834 Msa1094810:CDS 55.0%
! TTGGTTGGCCATGGGCTTTC+GGG - chr7_3:16882002-16882021 None:intergenic 55.0%
GGTTTGGGTCTTCTCGACCT+TGG - chr7_3:16882042-16882061 None:intergenic 55.0%
ACAGGCTTGAGGTCTGAGCT+TGG - chr7_3:16882103-16882122 None:intergenic 55.0%
TCAGACCTCAAGCCTGTGCA+AGG + chr7_3:16882106-16882125 Msa1094810:CDS 55.0%
GTGTTGCAGTCTGTCGTGGA+CGG + chr7_3:16882181-16882200 Msa1094810:CDS 55.0%
CCACATTGACCCAGCAGGAT+GGG + chr7_3:16882204-16882223 Msa1094810:CDS 55.0%
TGAATGGGATGCCGCGAGTA+AGG + chr7_3:16882228-16882247 Msa1094810:CDS 55.0%
ATGAACAGTGGAGCAGGTGC+TGG + chr7_3:16882283-16882302 Msa1094810:CDS 55.0%
ACAGGGGTGGCCTTCATTGA+AGG + chr7_3:16882415-16882434 Msa1094810:CDS 55.0%
GGCCAATGTTGTGGTGGCTC+AGG + chr7_3:16881410-16881429 Msa1094810:CDS 60.0%
! TCTCTGGGCCTGCCGTGTTT+TGG - chr7_3:16881790-16881809 None:intergenic 60.0%
GCAACTGCCTGGTGCTTCTC+TGG - chr7_3:16881806-16881825 None:intergenic 60.0%
CGACACGAAGAGCAACTGCC+TGG - chr7_3:16881817-16881836 None:intergenic 60.0%
! GGGCCGCAAGTTTGCTCTTC+TGG - chr7_3:16881982-16882001 None:intergenic 60.0%
AGGAGCCTTGCACAGGCTTG+AGG - chr7_3:16882114-16882133 None:intergenic 60.0%
GCCACATTGACCCAGCAGGA+TGG + chr7_3:16882203-16882222 Msa1094810:CDS 60.0%
CCCATCCTGCTGGGTCAATG+TGG - chr7_3:16882207-16882226 None:intergenic 60.0%
!! ACCCAGCAGGATGGGCTGAA+TGG + chr7_3:16882212-16882231 Msa1094810:CDS 60.0%
CCCATTCAGCCCATCCTGCT+GGG - chr7_3:16882216-16882235 None:intergenic 60.0%
!! CCCAGCAGGATGGGCTGAAT+GGG + chr7_3:16882213-16882232 Msa1094810:CDS 60.0%
TCCCATTCAGCCCATCCTGC+TGG - chr7_3:16882217-16882236 None:intergenic 60.0%
ACTTGCGGCCCGAAAGCCCA+TGG + chr7_3:16881991-16882010 Msa1094810:CDS 65.0%
GACGGCCACATTGACCCAGC+AGG + chr7_3:16882199-16882218 Msa1094810:CDS 65.0%
GTGGTGGCTCAGGACGGGAG+CGG + chr7_3:16881420-16881439 Msa1094810:CDS 70.0%
!! GGCAGGCCCAGAGAAGCACC+AGG + chr7_3:16881796-16881815 Msa1094810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 16880413 16882910 16880413 ID=Msa1094810;Name=Msa1094810
chr7_3 mRNA 16880413 16882910 16880413 ID=Msa1094810-mRNA-1;Parent=Msa1094810;Name=Msa1094810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=281|1|1|1|1|1|2|466|554
chr7_3 exon 16880413 16881660 16880413 ID=Msa1094810-mRNA-1:exon:3751;Parent=Msa1094810-mRNA-1
chr7_3 exon 16881747 16882910 16881747 ID=Msa1094810-mRNA-1:exon:3752;Parent=Msa1094810-mRNA-1
chr7_3 five_prime_UTR 16880413 16880693 16880413 ID=Msa1094810-mRNA-1:five_prime_utr;Parent=Msa1094810-mRNA-1
chr7_3 CDS 16880694 16881660 16880694 ID=Msa1094810-mRNA-1:cds;Parent=Msa1094810-mRNA-1
chr7_3 CDS 16881747 16882444 16881747 ID=Msa1094810-mRNA-1:cds;Parent=Msa1094810-mRNA-1
chr7_3 three_prime_UTR 16882445 16882910 16882445 ID=Msa1094810-mRNA-1:three_prime_utr;Parent=Msa1094810-mRNA-1
Gene Sequence

>Msa1094810

ATGGCTAGCCAACAATCTTTGCTAGACAAGCCAAAAAAATCCATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGTTGCTATCATAAGTTCATCAGCCCTTATTATTTCTCATCTCAATAAACCTATCTCCTTCTTCAATCTCTCCTCAGCTCCTAATCTGTGTGAGCATGCTCTTGATACAAAATCATGCTTAACTCATGTATCAGAAGTGGTTCAAGGTTCAACCTTGTCCAACACAAAAGACCACAAATTGAGTACACTCGTATCGTTGTTAACCAAATCGACTGAACACATTCGAAAGGTTATGGACACGGCTAATGTTATCAAACGCCGTGTTAATAGCCCTAGAGAGGAAAATGCTTTGAATGACTGTGAGGAATTAATGGATTTGTCCATGGATAGAGTTTGGGCCTCAGTATTGATTCTAACCAAAAATAACATTGACTCACAGCATGATGCACACACATGGTTGAGTAGTGTGCTCACTAACCATGCAACTTGCATGGATGGATTAGAAGGTTCATCTCGGGTCGTTATGGAGAGTGATCTTCAGGACTTGATCTCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTGCCTCCAAAGGCTAATGACGGATTCATTGATGAAAAATTGAATGGCGATTTTCCATCTTGGGTGACAAGTAAGGATCGAAGACTTTTGGAGTCTTCAGTTGGGGACATAAAGGCCAATGTTGTGGTGGCTCAGGACGGGAGCGGCAAGTTCAAGACTGTGGCTCAAGCTGTTGCATCTGCACCAGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAACGTAGAAATTGGCAAGAAAAAGACGAATGTGATGCTAGTGGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTCATAGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTAGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGTGTCGGCGCTGATCAATCCGTCATTAACCGCTGCAAAATTGATGCATTTCAAGACACACTCTACGCACATTCCAACCGACAATTTTACCGTGACTCCTACATTACTGGTACTGTTGACTTTATCTTTGGAAACGCAGCTGTTGTGTTCCAGAAGAGCAAACTTGCGGCCCGAAAGCCCATGGCCAACCAAAAAAACATGGTCACTGCCCAAGGTCGAGAAGACCCAAACCAGAACACCGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCTCCTTCAAAACATACCTAGGTCGTCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAGTCTGTCGTGGACGGCCACATTGACCCAGCAGGATGGGCTGAATGGGATGCCGCGAGTAAGGACTTTTTGCAAACATTGTATTATGGAGAGTACATGAACAGTGGAGCAGGTGCTGGTACCAGTAAGAGAGTGACTTGGCCAGGTTATCATATCATAAAAAATGCTGCTGAGGCAAGTAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATTGAAGGCCTGTAG
Protein sequence

>Msa1094810

MASQQSLLDKPKKSIPKTFWLILSLVAIISSSALIISHLNKPISFFNLSSAPNLCEHALDTKSCLTHVSEVVQGSTLSNTKDHKLSTLVSLLTKSTEHIRKVMDTANVIKRRVNSPREENALNDCEELMDLSMDRVWASVLILTKNNIDSQHDAHTWLSSVLTNHATCMDGLEGSSRVVMESDLQDLISRARSSLAVLVSVLPPKANDGFIDEKLNGDFPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMANQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSFKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTSKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL*