AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0534900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534900 MtrunA17_Chr4g0008801 98.780 164 2 0 1 164 1 164 7.87e-119 332
Msa0534900 MtrunA17_Chr7g0240701 70.701 157 46 0 1 157 1 157 1.94e-83 243
Msa0534900 MtrunA17_Chr4g0032261 65.409 159 55 0 1 159 1 159 5.69e-75 221
Msa0534900 MtrunA17_Chr5g0433951 56.098 164 72 0 1 164 1 164 1.12e-61 187
Msa0534900 MtrunA17_Chr2g0294421 47.500 160 84 0 1 160 1 160 1.30e-48 154
Msa0534900 MtrunA17_Chr5g0427291 37.654 162 85 5 9 157 12 170 1.36e-21 86.3
Msa0534900 MtrunA17_Chr1g0194801 33.742 163 90 6 3 157 4 156 1.10e-17 75.5
Msa0534900 MtrunA17_Chr1g0192651 32.515 163 100 4 5 165 9 163 5.42e-17 73.9
Msa0534900 MtrunA17_Chr6g0464761 73.171 41 11 0 95 135 12 52 1.06e-15 68.2
Msa0534900 MtrunA17_Chr4g0001641 48.387 62 32 0 100 161 8 69 1.14e-15 67.8
Msa0534900 MtrunA17_Chr1g0176321 30.120 166 95 4 9 157 7 168 3.73e-15 69.3
Msa0534900 MtrunA17_Chr1g0176311 29.375 160 98 3 9 157 26 181 2.57e-14 67.4
Msa0534900 MtrunA17_Chr2g0323291 26.994 163 109 4 2 157 22 181 1.56e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534900 AT3G53990.1 75.472 159 39 0 1 159 1 159 2.22e-88 255
Msa0534900 AT3G03270.2 60.377 159 63 0 1 159 1 159 4.54e-63 191
Msa0534900 AT3G17020.1 50.000 154 76 1 5 157 7 160 9.72e-55 170
Msa0534900 AT3G53990.2 74.490 98 25 0 1 98 1 98 1.75e-47 150
Msa0534900 AT3G03270.1 57.037 135 58 0 1 135 1 135 8.14e-47 151
Msa0534900 AT3G17020.2 47.253 91 47 1 5 94 7 97 5.99e-25 93.2
Msa0534900 AT1G09740.2 32.530 166 96 3 9 164 12 171 4.01e-20 82.4
Msa0534900 AT1G09740.1 32.530 166 96 3 9 164 12 171 4.01e-20 82.4
Msa0534900 AT3G62550.1 33.939 165 92 4 3 160 5 159 1.70e-18 78.2
Msa0534900 AT3G58450.1 30.636 173 94 4 9 165 34 196 2.06e-18 79.0
Msa0534900 AT3G58450.2 30.178 169 93 4 9 165 34 189 6.72e-18 77.4
Msa0534900 AT1G68300.1 31.169 154 99 3 5 157 10 157 1.81e-15 70.1
Msa0534900 AT3G11930.2 30.247 162 95 3 9 157 37 193 2.45e-15 70.5
Msa0534900 AT3G11930.1 30.435 161 95 3 9 157 37 192 7.73e-15 69.3
Msa0534900 AT3G11930.4 30.061 163 95 3 9 157 37 194 1.03e-14 68.9
Msa0534900 AT1G11360.2 30.435 161 99 6 5 157 38 193 2.84e-13 65.9
Msa0534900 AT1G11360.1 30.435 161 99 6 5 157 38 193 2.84e-13 65.9
Msa0534900 AT1G11360.4 30.435 161 99 6 5 157 38 193 2.84e-13 65.9
Msa0534900 AT1G11360.3 30.435 161 99 6 5 157 38 193 2.84e-13 65.9
Msa0534900 AT3G01520.1 26.582 158 99 6 14 165 24 170 1.97e-11 59.7
Msa0534900 AT5G54430.1 31.333 150 86 5 5 144 48 190 4.77e-11 59.7
Msa0534900 AT5G54430.4 31.333 150 86 5 5 144 48 190 4.77e-11 59.7
Msa0534900 AT5G54430.2 31.333 150 86 5 5 144 48 190 5.32e-11 59.7
Msa0534900 AT5G54430.5 31.333 150 86 5 5 144 48 190 5.32e-11 59.7
Msa0534900 AT5G54430.3 31.333 150 86 5 5 144 48 190 6.20e-11 59.3
Msa0534900 AT5G54430.6 31.333 150 86 5 5 144 48 190 6.20e-11 59.3

Find 41 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGATGAGTAATAAATTT+TGG 0.148958 4_1:+10629146 None:intergenic
AGCATGTGAAACTAATAAAT+TGG 0.262668 4_1:+10629128 None:intergenic
TTTGTGATAGCATTTAAATT+TGG 0.273144 4_1:-10629310 Msa0534900:three_prime_UTR
GATTATAAATTCTGACTATC+TGG 0.277037 4_1:-10629223 Msa0534900:three_prime_UTR
CAGAGCATTCTTGCTGCTCT+TGG 0.307367 4_1:+10631649 None:intergenic
GAAGCTGGATTCTCTTGTTA+TGG 0.310746 4_1:-10630675 Msa0534900:CDS
TATTGTTACAAAAGTGTATT+GGG 0.331126 4_1:-10630738 Msa0534900:CDS
TAGAACAATTGGTGTGGCTT+TGG 0.333421 4_1:-10631678 Msa0534900:CDS
CTTGAGAATTTAGCTGATAA+AGG 0.345536 4_1:-10631617 Msa0534900:CDS
AAGCTGGATTCTCTTGTTAT+GGG 0.360643 4_1:-10630674 Msa0534900:CDS
GCAGCAAGAATGCTCTGAAA+TGG 0.370068 4_1:-10631643 Msa0534900:CDS
TCTCATGAACAGGATATTAC+TGG 0.374010 4_1:-10629437 Msa0534900:intron
ATTCTCTTGTTATGGGTAGC+AGG 0.383547 4_1:-10630667 Msa0534900:CDS
CCATACTTCTTCATTATCTC+TGG 0.389368 4_1:+10630946 None:intergenic
ATGGCAAAAGATAGAACAAT+TGG 0.405644 4_1:-10631689 Msa0534900:CDS
GTACTTACGAGAACCATCTT+TGG 0.412789 4_1:+10631529 None:intergenic
ATGAAGCTCGTAATCAGTTA+TGG 0.420885 4_1:-10631553 Msa0534900:CDS
TTCTCTTGTTATGGGTAGCA+GGG 0.424515 4_1:-10630666 Msa0534900:CDS
ATATTGTTACAAAAGTGTAT+TGG 0.434652 4_1:-10630739 Msa0534900:CDS
CCAGAGATAATGAAGAAGTA+TGG 0.442632 4_1:-10630946 Msa0534900:CDS
TGGTGTTCAGATTGATATTG+AGG 0.444872 4_1:-10630926 Msa0534900:CDS
CAGCAAGAATGCTCTGAAAT+GGG 0.466495 4_1:-10631642 Msa0534900:CDS
TGAAGCTCGTAATCAGTTAT+GGG 0.466658 4_1:-10631552 Msa0534900:CDS
TGATGCAAGAGAGAAACTTA+TGG 0.472999 4_1:-10630714 Msa0534900:CDS
TGCTGTTGAAGATCTGAAGC+TGG 0.501707 4_1:-10630690 Msa0534900:CDS
AGTCACTGGGCAAGGAGCAT+TGG 0.516295 4_1:+10629390 None:intergenic
TTATCCTTGACAATAGTCAC+TGG 0.518152 4_1:+10629376 None:intergenic
TGAATAACAATCTATGTGTC+TGG 0.522408 4_1:+10629097 None:intergenic
GGTTCTCTGAACTCTTTCAA+AGG 0.548832 4_1:+10630967 None:intergenic
GGGGTCTCAGCACAATTCAA+AGG 0.550843 4_1:-10630646 Msa0534900:intron
CTCATGAACAGGATATTACT+GGG 0.555261 4_1:-10629436 Msa0534900:intron
TTGACAATAGTCACTGGGCA+AGG 0.566118 4_1:+10629382 None:intergenic
AATCAGTTATGGGCCAAAGA+TGG 0.569005 4_1:-10631542 Msa0534900:CDS
AGAAGAAATAGCTTTGACAA+GGG 0.585277 4_1:+10631766 None:intergenic
TCTCTTGTTATGGGTAGCAG+GGG 0.589338 4_1:-10630665 Msa0534900:CDS
TTGCCCAGTGACTATTGTCA+AGG 0.614312 4_1:-10629380 Msa0534900:CDS
AAGAAGAAATAGCTTTGACA+AGG 0.615031 4_1:+10631765 None:intergenic
ATTGTTACAAAAGTGTATTG+GGG 0.627971 4_1:-10630737 Msa0534900:CDS
CGAGGATAGAGATAGAGTCA+CGG 0.631817 4_1:+10631847 None:intergenic
TATCCTTGACAATAGTCACT+GGG 0.636411 4_1:+10629377 None:intergenic
AAAAGATAGAACAATTGGTG+TGG 0.650098 4_1:-10631684 Msa0534900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTGATTATTGATTTTT+AGG - chr4_1:10630168-10630187 Msa0534900:intron 10.0%
!! AAAAAATGAAGAAAAATGAA+TGG + chr4_1:10629429-10629448 None:intergenic 15.0%
!! CAGAAAAAATATAAAAACAT+AGG + chr4_1:10629468-10629487 None:intergenic 15.0%
!!! AACATACTTTATTTATCTTT+TGG - chr4_1:10629633-10629652 Msa0534900:intron 15.0%
!! TTTGATTCATACATTTATAT+CGG - chr4_1:10629753-10629772 Msa0534900:intron 15.0%
!!! ATATTTATTGATTTTGGTTT+TGG - chr4_1:10629874-10629893 Msa0534900:intron 15.0%
!!! GATATTTGTAAAATTGATTT+TGG + chr4_1:10631206-10631225 None:intergenic 15.0%
!!! AAAAAATTTACACGCTTTTT+TGG + chr4_1:10629112-10629131 None:intergenic 20.0%
!! TCAAACTAACAATATAAGAT+CGG + chr4_1:10629493-10629512 None:intergenic 20.0%
!!! GATCAAACTTTATTTATCTT+TGG - chr4_1:10629545-10629564 Msa0534900:intron 20.0%
!!! GACTCTAATAATCTAAAATT+CGG + chr4_1:10629572-10629591 None:intergenic 20.0%
!!! TTTAGATTTTAGTTTAGACA+AGG - chr4_1:10630105-10630124 Msa0534900:intron 20.0%
!!! ATATTGTTACAAAAGTGTAT+TGG - chr4_1:10630194-10630213 Msa0534900:intron 20.0%
!!! TATTGTTACAAAAGTGTATT+GGG - chr4_1:10630195-10630214 Msa0534900:intron 20.0%
!! AACACAAGATTAAGAAATTA+GGG + chr4_1:10630333-10630352 None:intergenic 20.0%
!! AAACACAAGATTAAGAAATT+AGG + chr4_1:10630334-10630353 None:intergenic 20.0%
!!! AATCTTGTGTTTAATGTTTT+TGG - chr4_1:10630342-10630361 Msa0534900:intron 20.0%
!!! ATCTTGTGTTTAATGTTTTT+GGG - chr4_1:10630343-10630362 Msa0534900:intron 20.0%
!! AGAAAATTAATTAGATCATG+TGG - chr4_1:10630402-10630421 Msa0534900:intron 20.0%
!! GAAAATTAATTAGATCATGT+GGG - chr4_1:10630403-10630422 Msa0534900:intron 20.0%
!! AAAATTAATTAGATCATGTG+GGG - chr4_1:10630404-10630423 Msa0534900:intron 20.0%
!! AATTCTATAAACTTAAGCTT+TGG + chr4_1:10630463-10630482 None:intergenic 20.0%
!! TTTGTGATAGCATTTAAATT+TGG - chr4_1:10631623-10631642 Msa0534900:CDS 20.0%
!!! ATTGGATGAGTAATAAATTT+TGG + chr4_1:10631790-10631809 None:intergenic 20.0%
! TCCTAATTCACAAACAAAAA+TGG - chr4_1:10629225-10629244 Msa0534900:three_prime_UTR 25.0%
!!! GACAGGATATTTATTGATTT+TGG - chr4_1:10629868-10629887 Msa0534900:intron 25.0%
!! ATTGTTACAAAAGTGTATTG+GGG - chr4_1:10630196-10630215 Msa0534900:intron 25.0%
!! TTTGTAGCTTTACAAAATCA+AGG - chr4_1:10630654-10630673 Msa0534900:CDS 25.0%
! AACTTATTGCTTGTTTGATT+TGG - chr4_1:10630775-10630794 Msa0534900:intron 25.0%
! CTACAAGAAACTACAATTTA+CGG + chr4_1:10630854-10630873 None:intergenic 25.0%
! ATTGAGATAGAATTGAGTTT+GGG + chr4_1:10630960-10630979 None:intergenic 25.0%
!!! TTCTCAGATCAATGTTATTT+TGG - chr4_1:10631017-10631036 Msa0534900:intron 25.0%
! ATTAAGATCTTGTAGTGAAA+GGG + chr4_1:10631397-10631416 None:intergenic 25.0%
!!! CATCAAAATATTTGTTGTGA+TGG - chr4_1:10631441-10631460 Msa0534900:intron 25.0%
! GATTATAAATTCTGACTATC+TGG - chr4_1:10631710-10631729 Msa0534900:exon 25.0%
! AGCATGTGAAACTAATAAAT+TGG + chr4_1:10631808-10631827 None:intergenic 25.0%
!! AGAAGAAATAGCTTTGACAA+GGG + chr4_1:10629170-10629189 None:intergenic 30.0%
!! AAGAAGAAATAGCTTTGACA+AGG + chr4_1:10629171-10629190 None:intergenic 30.0%
!!! GCCATTTTTGTTTGTGAATT+AGG + chr4_1:10629229-10629248 None:intergenic 30.0%
ATGGCAAAAGATAGAACAAT+TGG - chr4_1:10629244-10629263 Msa0534900:three_prime_UTR 30.0%
AAAAGATAGAACAATTGGTG+TGG - chr4_1:10629249-10629268 Msa0534900:three_prime_UTR 30.0%
CTTGAGAATTTAGCTGATAA+AGG - chr4_1:10629316-10629335 Msa0534900:three_prime_UTR 30.0%
!! TTCGATTTTGATACGATATC+TGG - chr4_1:10629786-10629805 Msa0534900:intron 30.0%
!!! ATTTGCTTGACACTTTTTCA+AGG - chr4_1:10630036-10630055 Msa0534900:intron 30.0%
! AGTTTAGACAAGGATGTTTT+AGG - chr4_1:10630115-10630134 Msa0534900:intron 30.0%
TGTAAAGCTACAAAAATGAG+TGG + chr4_1:10630648-10630667 None:intergenic 30.0%
ATAGTGAGATCGAATAATCA+CGG + chr4_1:10630687-10630706 None:intergenic 30.0%
! CCAACGTAAATGTGATTTTT+GGG + chr4_1:10630736-10630755 None:intergenic 30.0%
! ACCAACGTAAATGTGATTTT+TGG + chr4_1:10630737-10630756 None:intergenic 30.0%
TTCATAAGTTCACAACAGAA+TGG + chr4_1:10630830-10630849 None:intergenic 30.0%
TTGAGATAGAATTGAGTTTG+GGG + chr4_1:10630959-10630978 None:intergenic 30.0%
CATTGAGATAGAATTGAGTT+TGG + chr4_1:10630961-10630980 None:intergenic 30.0%
! TGATTTTATGTCACTGCAAA+AGG + chr4_1:10630996-10631015 None:intergenic 30.0%
! ATTTTGTTGGATTGAAAGTG+TGG - chr4_1:10631050-10631069 Msa0534900:intron 30.0%
!!! CATATAGAAGAGCATCTTTT+AGG - chr4_1:10631308-10631327 Msa0534900:intron 30.0%
!! AATATCTATCTGAGTACTGA+AGG - chr4_1:10631357-10631376 Msa0534900:intron 30.0%
GATTAAGATCTTGTAGTGAA+AGG + chr4_1:10631398-10631417 None:intergenic 30.0%
AAAATTTGAGTCTCATGAAC+AGG - chr4_1:10631486-10631505 Msa0534900:intron 30.0%
TGAATAACAATCTATGTGTC+TGG + chr4_1:10631839-10631858 None:intergenic 30.0%
ATGAAGCTCGTAATCAGTTA+TGG - chr4_1:10629380-10629399 Msa0534900:CDS 35.0%
TGAAGCTCGTAATCAGTTAT+GGG - chr4_1:10629381-10629400 Msa0534900:CDS 35.0%
!! TTCTTTTTGTTGTCACTCTC+CGG + chr4_1:10629696-10629715 None:intergenic 35.0%
ATAATCAAGAGAACATGCAC+TGG + chr4_1:10629827-10629846 None:intergenic 35.0%
CCATACTTCTTCATTATCTC+TGG + chr4_1:10629990-10630009 None:intergenic 35.0%
CCAGAGATAATGAAGAAGTA+TGG - chr4_1:10629987-10630006 Msa0534900:intron 35.0%
TGGTGTTCAGATTGATATTG+AGG - chr4_1:10630007-10630026 Msa0534900:intron 35.0%
!!! CACTTTTTCAAGGCAAAAAG+AGG - chr4_1:10630046-10630065 Msa0534900:intron 35.0%
TGATGCAAGAGAGAAACTTA+TGG - chr4_1:10630219-10630238 Msa0534900:intron 35.0%
! AAGCTGGATTCTCTTGTTAT+GGG - chr4_1:10630259-10630278 Msa0534900:intron 35.0%
!!! GTTTGTTTTGGAGTGTAAGT+TGG - chr4_1:10630426-10630445 Msa0534900:intron 35.0%
! TACGTGAGTAAGAACGATTT+TGG - chr4_1:10630589-10630608 Msa0534900:intron 35.0%
! GTAGCTTTACAAAATCAAGG+TGG - chr4_1:10630657-10630676 Msa0534900:CDS 35.0%
ACTATCCAAACATGTACGTT+TGG - chr4_1:10630702-10630721 Msa0534900:CDS 35.0%
TGTAACCAAACGTACATGTT+TGG + chr4_1:10630710-10630729 None:intergenic 35.0%
!! ACGTAAATGTGATTTTTGGG+TGG + chr4_1:10630733-10630752 None:intergenic 35.0%
CCCAAAAATCACATTTACGT+TGG - chr4_1:10630733-10630752 Msa0534900:CDS 35.0%
GCTAGAATCAATTATAGGAC+TGG + chr4_1:10630937-10630956 None:intergenic 35.0%
TTGGGGCTAGAATCAATTAT+AGG + chr4_1:10630942-10630961 None:intergenic 35.0%
ACAACTGCGTTATAAAGTGT+TGG - chr4_1:10631082-10631101 Msa0534900:intron 35.0%
! TGTCGTTAAATCTGATGATG+AGG - chr4_1:10631265-10631284 Msa0534900:intron 35.0%
! GTCGTTAAATCTGATGATGA+GGG - chr4_1:10631266-10631285 Msa0534900:intron 35.0%
AGATGCTCTTCTATATGCAT+CGG + chr4_1:10631305-10631324 None:intergenic 35.0%
TCTCATGAACAGGATATTAC+TGG - chr4_1:10631496-10631515 Msa0534900:intron 35.0%
CTCATGAACAGGATATTACT+GGG - chr4_1:10631497-10631516 Msa0534900:intron 35.0%
TATCCTTGACAATAGTCACT+GGG + chr4_1:10631559-10631578 None:intergenic 35.0%
TTATCCTTGACAATAGTCAC+TGG + chr4_1:10631560-10631579 None:intergenic 35.0%
!!! ATTTACACGCTTTTTTGGCG+AGG + chr4_1:10629107-10629126 None:intergenic 40.0%
TAGAACAATTGGTGTGGCTT+TGG - chr4_1:10629255-10629274 Msa0534900:three_prime_UTR 40.0%
!! CAGCAAGAATGCTCTGAAAT+GGG - chr4_1:10629291-10629310 Msa0534900:three_prime_UTR 40.0%
AATCAGTTATGGGCCAAAGA+TGG - chr4_1:10629391-10629410 Msa0534900:CDS 40.0%
GTACTTACGAGAACCATCTT+TGG + chr4_1:10629407-10629426 None:intergenic 40.0%
AGTCTCGAGTCTAATTAGAC+TGG - chr4_1:10629588-10629607 Msa0534900:intron 40.0%
ATGACATGACATGACATGAC+AGG - chr4_1:10629851-10629870 Msa0534900:intron 40.0%
GGTTCTCTGAACTCTTTCAA+AGG + chr4_1:10629969-10629988 None:intergenic 40.0%
GAAGCTGGATTCTCTTGTTA+TGG - chr4_1:10630258-10630277 Msa0534900:intron 40.0%
! ATTCTCTTGTTATGGGTAGC+AGG - chr4_1:10630266-10630285 Msa0534900:intron 40.0%
! TTCTCTTGTTATGGGTAGCA+GGG - chr4_1:10630267-10630286 Msa0534900:intron 40.0%
!! AGATCATGTGGGGTTTGTTT+TGG - chr4_1:10630414-10630433 Msa0534900:intron 40.0%
ATACTCAAGTCGCTCATGTT+TGG - chr4_1:10630543-10630562 Msa0534900:intron 40.0%
! ACATTTACGTTGGTGAAACG+TGG - chr4_1:10630743-10630762 Msa0534900:CDS 40.0%
GTTTGTTTCCACTGCAGAAT+GGG + chr4_1:10630891-10630910 None:intergenic 40.0%
TGTTTGTTTCCACTGCAGAA+TGG + chr4_1:10630892-10630911 None:intergenic 40.0%
! TGGCAAAAGCTGCATTTTGT+TGG - chr4_1:10631037-10631056 Msa0534900:intron 40.0%
!! TGGATTGAAAGTGTGGCTTT+TGG - chr4_1:10631057-10631076 Msa0534900:intron 40.0%
!! GCAGCAAGAATGCTCTGAAA+TGG - chr4_1:10629290-10629309 Msa0534900:three_prime_UTR 45.0%
! TTTATCTTTTGGCCGAGCTC+TGG - chr4_1:10629644-10629663 Msa0534900:intron 45.0%
TCTCCGGTTCTTAGAGAAAC+CGG + chr4_1:10629680-10629699 None:intergenic 45.0%
TACGATATCTGGCCAAACTC+TGG - chr4_1:10629797-10629816 Msa0534900:intron 45.0%
! TGCACTGGTAATCCAGAGTT+TGG + chr4_1:10629812-10629831 None:intergenic 45.0%
! TGCTGTTGAAGATCTGAAGC+TGG - chr4_1:10630243-10630262 Msa0534900:intron 45.0%
! TCTCTTGTTATGGGTAGCAG+GGG - chr4_1:10630268-10630287 Msa0534900:intron 45.0%
ACAATGATAGATGCGTGCCT+AGG - chr4_1:10630803-10630822 Msa0534900:intron 45.0%
GTTCACAACAGAATGGACCT+AGG + chr4_1:10630823-10630842 None:intergenic 45.0%
CACTGCAGAATGGGTATAAG+AGG + chr4_1:10630882-10630901 None:intergenic 45.0%
CTCTTATACCCATTCTGCAG+TGG - chr4_1:10630880-10630899 Msa0534900:intron 45.0%
TTGACAATAGTCACTGGGCA+AGG + chr4_1:10631554-10631573 None:intergenic 45.0%
TTGCCCAGTGACTATTGTCA+AGG - chr4_1:10631553-10631572 Msa0534900:CDS 45.0%
!!! TTATGTTTTTTTTTTTTTTT+TGG - chr4_1:10629927-10629946 Msa0534900:intron 5.0%
!! ATTAATAATAATTTATTCAT+AGG + chr4_1:10631420-10631439 None:intergenic 5.0%
! CAGAGCATTCTTGCTGCTCT+TGG + chr4_1:10629287-10629306 None:intergenic 50.0%
GGTCCTGATAATCCAGAGCT+CGG + chr4_1:10629659-10629678 None:intergenic 50.0%
!! GAGCTCTGGATTATCAGGAC+CGG - chr4_1:10629658-10629677 Msa0534900:intron 50.0%
! GGACCGGTTTCTCTAAGAAC+CGG - chr4_1:10629674-10629693 Msa0534900:intron 50.0%
GGGGTCTCAGCACAATTCAA+AGG - chr4_1:10630287-10630306 Msa0534900:intron 50.0%
GTCGCTCATGTTTGGATGAG+CGG - chr4_1:10630551-10630570 Msa0534900:intron 50.0%
!! TGGCCGAGCTCTGGATTATC+AGG - chr4_1:10629653-10629672 Msa0534900:intron 55.0%
! AGTCACTGGGCAAGGAGCAT+TGG + chr4_1:10631546-10631565 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10629088 10631867 10629088 ID=Msa0534900;Name=Msa0534900
chr4_1 mRNA 10629088 10631867 10629088 ID=Msa0534900-mRNA-1;Parent=Msa0534900;Name=Msa0534900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=156|1|1|1|1|1|4|263|166
chr4_1 exon 10629088 10629447 10629088 ID=Msa0534900-mRNA-1:exon:3407;Parent=Msa0534900-mRNA-1
chr4_1 exon 10630647 10630765 10630647 ID=Msa0534900-mRNA-1:exon:3406;Parent=Msa0534900-mRNA-1
chr4_1 exon 10630888 10630997 10630888 ID=Msa0534900-mRNA-1:exon:3405;Parent=Msa0534900-mRNA-1
chr4_1 exon 10631537 10631867 10631537 ID=Msa0534900-mRNA-1:exon:3404;Parent=Msa0534900-mRNA-1
chr4_1 five_prime_UTR 10631712 10631867 10631712 ID=Msa0534900-mRNA-1:five_prime_utr;Parent=Msa0534900-mRNA-1
chr4_1 CDS 10631537 10631711 10631537 ID=Msa0534900-mRNA-1:cds;Parent=Msa0534900-mRNA-1
chr4_1 CDS 10630888 10630997 10630888 ID=Msa0534900-mRNA-1:cds;Parent=Msa0534900-mRNA-1
chr4_1 CDS 10630647 10630765 10630647 ID=Msa0534900-mRNA-1:cds;Parent=Msa0534900-mRNA-1
chr4_1 CDS 10629351 10629447 10629351 ID=Msa0534900-mRNA-1:cds;Parent=Msa0534900-mRNA-1
chr4_1 three_prime_UTR 10629088 10629350 10629088 ID=Msa0534900-mRNA-1:three_prime_utr;Parent=Msa0534900-mRNA-1
Gene Sequence

>Msa0534900

ATGGCAAAAGATAGAACAATTGGTGTGGCTTTGGATTTCTCCAAGAGCAGCAAGAATGCTCTGAAATGGGCACTTGAGAATTTAGCTGATAAAGGTGACAACATTTACATCATTCACATCAGTCATGATTCTCTTGATGAAGCTCGTAATCAGTTATGGGCCAAAGATGGTTCTCCTCTTATTCCTTTGAAAGAGTTCAGAGAACCAGAGATAATGAAGAAGTATGGTGTTCAGATTGATATTGAGGTTCTTGATTTGCTTGACACTTTTTCAAGGCAAAAAGAGGTGAATATTGTTACAAAAGTGTATTGGGGTGATGCAAGAGAGAAACTTATGGATGCTGTTGAAGATCTGAAGCTGGATTCTCTTGTTATGGGTAGCAGGGGTCTCAGCACAATTCAAAGGATATTACTGGGAAGTGTAAGCAACTTTGTGATGACCAATGCTCCTTGCCCAGTGACTATTGTCAAGGATAATAGCAGCAGCAGCAGCAGCAAGTAA

Protein sequence

>Msa0534900

MAKDRTIGVALDFSKSSKNALKWALENLADKGDNIYIIHISHDSLDEARNQLWAKDGSPLIPLKEFREPEIMKKYGVQIDIEVLDLLDTFSRQKEVNIVTKVYWGDAREKLMDAVEDLKLDSLVMGSRGLSTIQRILLGSVSNFVMTNAPCPVTIVKDNSSSSSSK*