Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473990 | XP_013450735.1 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473990 | sp|Q9LT57|CFM9_ARATH | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.73e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473990 | A0A072U6I9 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422400 | Msa0473990 | 0.818625 | 1.777885e-52 | -8.615850e-47 |
| Msa0473990 | Msa0474010 | 0.887038 | 2.026520e-72 | -8.615850e-47 |
| Msa0473990 | Msa0933310 | 0.802631 | 5.119423e-49 | -8.615850e-47 |
| Msa0473990 | Msa0969340 | 0.904411 | 1.262096e-79 | -8.615850e-47 |
| Msa0473990 | Msa0969630 | 0.815796 | 7.695257e-52 | -8.615850e-47 |
| Msa0473990 | Msa0969790 | 0.805706 | 1.172834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473990 | MtrunA17_Chr6g0449261 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Msa0473990 | MtrunA17_Chr4g0067911 | 49.704 | 169 | 85 | 0 | 113 | 281 | 161 | 329 | 2.22e-45 | 164 |
| Msa0473990 | MtrunA17_Chr1g0171521 | 51.634 | 153 | 72 | 1 | 110 | 260 | 116 | 268 | 2.09e-42 | 154 |
| Msa0473990 | MtrunA17_Chr4g0033621 | 44.970 | 169 | 93 | 0 | 113 | 281 | 134 | 302 | 5.31e-40 | 151 |
| Msa0473990 | MtrunA17_Chr8g0391361 | 48.611 | 144 | 74 | 0 | 113 | 256 | 7 | 150 | 4.66e-37 | 135 |
| Msa0473990 | MtrunA17_Chr6g0484411 | 32.701 | 211 | 128 | 5 | 77 | 284 | 557 | 756 | 4.46e-23 | 104 |
| Msa0473990 | MtrunA17_Chr1g0187011 | 31.925 | 213 | 127 | 6 | 77 | 284 | 566 | 765 | 5.38e-23 | 104 |
| Msa0473990 | MtrunA17_Chr6g0451621 | 35.593 | 177 | 106 | 3 | 114 | 284 | 518 | 692 | 1.40e-21 | 100 |
| Msa0473990 | MtrunA17_Chr2g0330811 | 37.500 | 128 | 72 | 2 | 148 | 272 | 593 | 715 | 9.08e-18 | 87.4 |
| Msa0473990 | MtrunA17_Chr4g0071101 | 28.293 | 205 | 140 | 3 | 89 | 290 | 531 | 731 | 3.38e-17 | 85.9 |
| Msa0473990 | MtrunA17_Chr8g0391141 | 30.851 | 188 | 120 | 4 | 74 | 258 | 412 | 592 | 1.11e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473990 | AT3G27550.2 | 71.756 | 393 | 96 | 6 | 1 | 385 | 1 | 386 | 4.19e-164 | 481 |
| Msa0473990 | AT3G27550.3 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.82e-163 | 476 |
| Msa0473990 | AT3G27550.1 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.82e-163 | 476 |
| Msa0473990 | AT3G25440.2 | 45.918 | 196 | 104 | 1 | 96 | 289 | 57 | 252 | 2.85e-47 | 171 |
| Msa0473990 | AT3G25440.1 | 45.918 | 196 | 104 | 1 | 96 | 289 | 121 | 316 | 1.42e-46 | 171 |
| Msa0473990 | AT2G28480.1 | 46.857 | 175 | 93 | 0 | 107 | 281 | 119 | 293 | 7.29e-44 | 161 |
| Msa0473990 | AT3G25440.4 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0473990 | AT3G25440.3 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0473990 | AT3G25440.5 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0473990 | AT4G13070.1 | 45.128 | 195 | 97 | 3 | 78 | 268 | 111 | 299 | 1.71e-40 | 151 |
| Msa0473990 | AT3G18390.1 | 35.106 | 188 | 109 | 4 | 100 | 284 | 611 | 788 | 1.88e-25 | 112 |
| Msa0473990 | AT3G23070.1 | 36.000 | 175 | 99 | 3 | 90 | 261 | 586 | 750 | 7.31e-23 | 104 |
| Msa0473990 | AT4G14510.1 | 32.812 | 192 | 116 | 3 | 90 | 278 | 613 | 794 | 2.50e-22 | 102 |
| Msa0473990 | AT3G01370.1 | 37.143 | 140 | 85 | 1 | 148 | 284 | 575 | 714 | 3.49e-22 | 102 |
| Msa0473990 | AT4G29750.1 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 4.42e-21 | 98.6 |
| Msa0473990 | AT4G29750.2 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 6.98e-21 | 97.8 |
| Msa0473990 | AT5G16180.1 | 31.795 | 195 | 118 | 5 | 111 | 290 | 523 | 717 | 1.57e-16 | 84.0 |
Find 207 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGGTGATCTCTTCTTA+TGG | 0.210452 | 3_3:+76743121 | None:intergenic |
| GTTGGTGTTCGTGGAGTATT+TGG | 0.242614 | 3_3:-76744965 | Msa0473990:CDS |
| AAGAGTCTGGTAAAACATTA+AGG | 0.251609 | 3_3:-76747196 | Msa0473990:CDS |
| TTGTTCAGATGTGTACTTTA+GGG | 0.259867 | 3_3:-76742927 | Msa0473990:three_prime_UTR |
| TTCAGCTTCATATTCTTTAT+CGG | 0.273368 | 3_3:+76743905 | None:intergenic |
| TGCAATGTGGGAGTCGGATT+TGG | 0.290486 | 3_3:-76743433 | Msa0473990:CDS |
| CATTTCTTTAATTCTTTCCT+TGG | 0.291251 | 3_3:+76744871 | None:intergenic |
| TCCCTGCCTCTCAAACTCTT+TGG | 0.295275 | 3_3:+76743294 | None:intergenic |
| TTTGTTCAGATGTGTACTTT+AGG | 0.300577 | 3_3:-76742928 | Msa0473990:three_prime_UTR |
| CTCTTTGTAAGGGTATTAAT+AGG | 0.314891 | 3_3:+76744740 | None:intergenic |
| CAAGCTTCATCAGCTTCCTT+TGG | 0.315883 | 3_3:+76743105 | None:intergenic |
| AGTTTGGAAGACTTAGATAT+TGG | 0.318025 | 3_3:-76743863 | Msa0473990:CDS |
| ATTGGCAATGGTCAAGTTAA+TGG | 0.324195 | 3_3:-76743546 | Msa0473990:CDS |
| AGCTAAATTTAGGACGAATA+TGG | 0.330496 | 3_3:-76743502 | Msa0473990:CDS |
| AGTCCTCCTCACCTTCTGAT+TGG | 0.334499 | 3_3:+76743205 | None:intergenic |
| TTCAGAAATGTTGTGCCTTT+AGG | 0.335105 | 3_3:-76747386 | Msa0473990:intron |
| ATTTCTTTAATTCTTTCCTT+GGG | 0.340101 | 3_3:+76744872 | None:intergenic |
| TTCAAGAGCTTGCTCAAATC+TGG | 0.345605 | 3_3:+76744184 | None:intergenic |
| ATCTTACCTTCCTCTTTGTA+AGG | 0.348042 | 3_3:+76744729 | None:intergenic |
| CTTTACACCCGAACAGCTTC+AGG | 0.349585 | 3_3:-76745029 | Msa0473990:CDS |
| CCTTTAGCGGTTTGGAAGAC+TGG | 0.351247 | 3_3:-76743233 | Msa0473990:CDS |
| CTCAAATCTGGCCTTGAATA+GGG | 0.356118 | 3_3:+76744196 | None:intergenic |
| TGCTCTATTCCTTGTCCTAA+AGG | 0.362024 | 3_3:+76747371 | None:intergenic |
| TTTATACGCCTGAAGCTGTT+CGG | 0.362329 | 3_3:+76745021 | None:intergenic |
| GCTCAAATCTGGCCTTGAAT+AGG | 0.363277 | 3_3:+76744195 | None:intergenic |
| CATGGATGCCTTTAGCGGTT+TGG | 0.367845 | 3_3:-76743241 | Msa0473990:CDS |
| AAGTTGAAAGAGAGATGAAA+TGG | 0.367950 | 3_3:+76747650 | None:intergenic |
| TTATACGCCTGAAGCTGTTC+GGG | 0.370216 | 3_3:+76745022 | None:intergenic |
| AACTTCAATCCAATCTCTTC+AGG | 0.372514 | 3_3:-76747632 | Msa0473990:intron |
| AGAAAGTGGAAGCCACTCTT+TGG | 0.372764 | 3_3:+76744075 | None:intergenic |
| GATTCCTCCAAACCATCATT+AGG | 0.373992 | 3_3:+76743984 | None:intergenic |
| ACTCATTCTTCAAACTGAAA+AGG | 0.379691 | 3_3:+76747744 | None:intergenic |
| GTCCTCCTCACCTTCTGATT+GGG | 0.380053 | 3_3:+76743206 | None:intergenic |
| GCCATTGCAGTTGGATCCTC+AGG | 0.380404 | 3_3:+76744104 | None:intergenic |
| ACTTCCATCTTTCTTGTCAA+TGG | 0.383828 | 3_3:+76744046 | None:intergenic |
| GCCAAAGAAAAGGAAGAGTT+TGG | 0.388346 | 3_3:-76743879 | Msa0473990:CDS |
| GGAATCAGATCCTGCTGAAC+AGG | 0.388918 | 3_3:-76743967 | Msa0473990:CDS |
| TGTGTACACCGAAGTTATTT+AGG | 0.399084 | 3_3:-76742877 | Msa0473990:three_prime_UTR |
| AAGGGTTTACCTGAAGAGAT+TGG | 0.402994 | 3_3:+76747623 | None:intergenic |
| TGAGAAGGAATAACAGTAAG+AGG | 0.409015 | 3_3:+76742689 | None:intergenic |
| CTCATTCTTCAAACTGAAAA+GGG | 0.414892 | 3_3:+76747745 | None:intergenic |
| GACACGGTGAAGCTAAATTT+AGG | 0.418116 | 3_3:-76743512 | Msa0473990:CDS |
| AATAGAACCTAATGATGGTT+TGG | 0.420274 | 3_3:-76743991 | Msa0473990:CDS |
| AATACTCCACGAACACCAAC+TGG | 0.421248 | 3_3:+76744968 | None:intergenic |
| TATGTTCCAGTTGGTGTTCG+TGG | 0.423683 | 3_3:-76744974 | Msa0473990:CDS |
| GAGAGATGAAATGGGTTTGA+GGG | 0.425769 | 3_3:+76747659 | None:intergenic |
| AGAGAGATGAAATGGGTTTG+AGG | 0.426459 | 3_3:+76747658 | None:intergenic |
| CACCAAAGAGTTTGAGAGGC+AGG | 0.427775 | 3_3:-76743296 | Msa0473990:CDS |
| AACCAATCAACAATTTCTTC+AGG | 0.433306 | 3_3:+76742836 | None:intergenic |
| CTTGATATATTTATTAGAAG+TGG | 0.434170 | 3_3:-76742609 | Msa0473990:three_prime_UTR |
| AGTTTGAGAGGCAGGGAAGC+AGG | 0.434357 | 3_3:-76743288 | Msa0473990:CDS |
| GCTAAATTTAGGACGAATAT+GGG | 0.439861 | 3_3:-76743501 | Msa0473990:CDS |
| AACAATAAAAGCTATCGTTA+TGG | 0.440253 | 3_3:+76747318 | None:intergenic |
| TGCCGTGGTGGAGGCAGCTC+CGG | 0.440666 | 3_3:+76745064 | None:intergenic |
| TTTGAATGGATCCTTGTGTC+GGG | 0.442400 | 3_3:-76747276 | Msa0473990:CDS |
| AGAAGAATGCAGAAAGAGTC+TGG | 0.444428 | 3_3:-76747209 | Msa0473990:CDS |
| CAAGGAAAGAATTAAAGAAA+TGG | 0.444685 | 3_3:-76744870 | Msa0473990:CDS |
| AAATGGCGGCAGTGAGGATA+AGG | 0.446224 | 3_3:+76747772 | None:intergenic |
| AGGATAAATAATACAAGTAT+TGG | 0.447491 | 3_3:-76743564 | Msa0473990:CDS |
| GAGGTAGGTTCAAGGAAAGT+AGG | 0.447947 | 3_3:-76743599 | Msa0473990:CDS |
| CTATCGGCAGTCCGATGCTT+GGG | 0.449257 | 3_3:+76743738 | None:intergenic |
| CAAAGGAAGCTGATGAAGCT+TGG | 0.453830 | 3_3:-76743104 | Msa0473990:CDS |
| AGGTTAGAGGCTCAAGAGTT+CGG | 0.454485 | 3_3:-76743773 | Msa0473990:CDS |
| GGATAAGGATGGCGCGGCGG+AGG | 0.456392 | 3_3:+76747787 | None:intergenic |
| TATTGGAACAGAGAAGAGTA+TGG | 0.456496 | 3_3:-76743846 | Msa0473990:CDS |
| GCGGCGGAGGGAGTTGATTA+CGG | 0.461896 | 3_3:+76747800 | None:intergenic |
| GACTATGATGGTGAGGTTAG+AGG | 0.468968 | 3_3:-76743786 | Msa0473990:CDS |
| AAACTGAAAAGGGAGGAAAA+TGG | 0.471915 | 3_3:+76747755 | None:intergenic |
| AGTTGAAAGAGAGATGAAAT+GGG | 0.472804 | 3_3:+76747651 | None:intergenic |
| GTAGAAGAGAAGGGTTTCAA+GGG | 0.475423 | 3_3:+76747853 | None:intergenic |
| TGCCTGAAGAAATTGTTGAT+TGG | 0.477215 | 3_3:-76742838 | Msa0473990:three_prime_UTR |
| TCTGGATCATGCCGTGGTGG+AGG | 0.477830 | 3_3:+76745055 | None:intergenic |
| AAAGGAAGCTGATGAAGCTT+GGG | 0.481393 | 3_3:-76743103 | Msa0473990:CDS |
| TTATATACAGGCCCTATTCA+AGG | 0.481490 | 3_3:-76744207 | Msa0473990:intron |
| GGTGTTCGTGGAGTATTTGG+AGG | 0.482666 | 3_3:-76744962 | Msa0473990:CDS |
| TGGATGCTGGCCATTGCAGT+TGG | 0.483571 | 3_3:+76744095 | None:intergenic |
| AGTAGAAGAGAAGGGTTTCA+AGG | 0.484196 | 3_3:+76747852 | None:intergenic |
| ATTCTGGTATAGCATTTACT+TGG | 0.484390 | 3_3:+76743068 | None:intergenic |
| CCAGTCTTCCAAACCGCTAA+AGG | 0.489203 | 3_3:+76743233 | None:intergenic |
| TCAAGTACATCATGACTAGT+AGG | 0.489438 | 3_3:+76742627 | None:intergenic |
| AAACATAAAGAAAATAGAAC+AGG | 0.489664 | 3_3:-76744150 | Msa0473990:CDS |
| AGAGTCTGGTAAAACATTAA+GGG | 0.491117 | 3_3:-76747195 | Msa0473990:CDS |
| GGAAGCCACTCTTTGGATGC+TGG | 0.495190 | 3_3:+76744082 | None:intergenic |
| AGGTAGGTTCAAGGAAAGTA+GGG | 0.497194 | 3_3:-76743598 | Msa0473990:CDS |
| AGCTGAAGAGGCCAAAGAAA+AGG | 0.499259 | 3_3:-76743889 | Msa0473990:CDS |
| ATTCTCTTCATCGTCGCTAT+CGG | 0.500009 | 3_3:+76743722 | None:intergenic |
| CCCTACAAGTCAAAATAGTA+AGG | 0.500263 | 3_3:-76743160 | Msa0473990:CDS |
| GGACTCAAGAGGTGGTGATA+AGG | 0.500654 | 3_3:-76743187 | Msa0473990:CDS |
| AATGCCATTGACAAGAAAGA+TGG | 0.502487 | 3_3:-76744050 | Msa0473990:CDS |
| GCTATCGGCAGTCCGATGCT+TGG | 0.508858 | 3_3:+76743737 | None:intergenic |
| AGAACAGGACCTGCGGCGGA+TGG | 0.509673 | 3_3:-76744135 | Msa0473990:CDS |
| TCAGAAACCACACACGACTC+TGG | 0.510038 | 3_3:-76742974 | Msa0473990:three_prime_UTR |
| GATCCATTCAAAAGATTCAA+CGG | 0.510157 | 3_3:+76747287 | None:intergenic |
| TGTTCGGGTGTAAAGAGCTC+TGG | 0.511414 | 3_3:+76745037 | None:intergenic |
| GATAAGGATGGCGCGGCGGA+GGG | 0.512390 | 3_3:+76747788 | None:intergenic |
| GAGCAGCAGCAGCGATGATG+AGG | 0.514342 | 3_3:-76743361 | Msa0473990:CDS |
| ACTTTGTTTGACAATCAAAA+CGG | 0.514945 | 3_3:-76743028 | Msa0473990:three_prime_UTR |
| TCTAGCTCTTCCTGTTCAGC+AGG | 0.518776 | 3_3:+76743957 | None:intergenic |
| TTGTCTCCACGGTTAACATA+AGG | 0.519546 | 3_3:+76744023 | None:intergenic |
| GACGATGGTGAGTGGCATCA+TGG | 0.520485 | 3_3:-76743678 | Msa0473990:CDS |
| GTGTCCATGGATGCCTTTAG+CGG | 0.520678 | 3_3:-76743246 | Msa0473990:CDS |
| AATGTGGGAGTCGGATTTGG+AGG | 0.524703 | 3_3:-76743430 | Msa0473990:CDS |
| CTGAACAGGAAGAGCTAGAT+CGG | 0.526672 | 3_3:-76743953 | Msa0473990:CDS |
| TGCAAAATATGCATCTCCAT+TGG | 0.528015 | 3_3:-76744934 | Msa0473990:CDS |
| GCTTAAGAAATATGAGCTAC+CGG | 0.528659 | 3_3:-76745083 | Msa0473990:CDS |
| TGAAGCTAGAGGTAGGTTCA+AGG | 0.529177 | 3_3:-76743607 | Msa0473990:CDS |
| GTCAATGGCATTGAAGAAAG+TGG | 0.531512 | 3_3:+76744061 | None:intergenic |
| CCGCACTAAATCCGTGTCCA+TGG | 0.531564 | 3_3:-76743259 | Msa0473990:CDS |
| TGCGTCGGAAGTAGAAGAGA+AGG | 0.532772 | 3_3:+76747843 | None:intergenic |
| AACAAGAATTATGTTCCAGT+TGG | 0.532863 | 3_3:-76744983 | Msa0473990:CDS |
| TCTTACCTTCCTCTTTGTAA+GGG | 0.535231 | 3_3:+76744730 | None:intergenic |
| GAACAGGACCTGCGGCGGAT+GGG | 0.538425 | 3_3:-76744134 | Msa0473990:CDS |
| TAGAAGAGAAGGGTTTCAAG+GGG | 0.539623 | 3_3:+76747854 | None:intergenic |
| GATTTACTCCCATCCGCCGC+AGG | 0.541197 | 3_3:+76744126 | None:intergenic |
| TTACTGACGGCTTGTCTCCA+CGG | 0.541347 | 3_3:+76744012 | None:intergenic |
| AGAACCTAATGATGGTTTGG+AGG | 0.543260 | 3_3:-76743988 | Msa0473990:CDS |
| CGAAGTTGAAAATGCAATGT+GGG | 0.549326 | 3_3:-76743445 | Msa0473990:CDS |
| CAAACCGCTAAAGGCATCCA+TGG | 0.549768 | 3_3:+76743242 | None:intergenic |
| ACCGAAGTTATTTAGGTGGG+TGG | 0.551390 | 3_3:-76742870 | Msa0473990:three_prime_UTR |
| CCCACCCACCTAAATAACTT+CGG | 0.554815 | 3_3:+76742869 | None:intergenic |
| TGAAGCTTGGGACAGTGACT+AGG | 0.557695 | 3_3:-76743091 | Msa0473990:exon |
| GCTGTCAACATCACTGTCAT+CGG | 0.559876 | 3_3:+76743647 | None:intergenic |
| AATGTTGTGCCTTTAGGACA+AGG | 0.561411 | 3_3:-76747380 | Msa0473990:CDS |
| TAAAGAATATGAAGCTGAAG+AGG | 0.562743 | 3_3:-76743901 | Msa0473990:CDS |
| TGGAACAGAGAAGAGTATGG+TGG | 0.564267 | 3_3:-76743843 | Msa0473990:CDS |
| TTTCTTTAATTCTTTCCTTG+GGG | 0.565613 | 3_3:+76744873 | None:intergenic |
| AATGCACCAAAGAGTTTGAG+AGG | 0.565918 | 3_3:-76743300 | Msa0473990:CDS |
| GAGGTAACATTATTGTGAGA+AGG | 0.567194 | 3_3:+76742674 | None:intergenic |
| TCATTAGGTTCTATTACTGA+CGG | 0.569181 | 3_3:+76743999 | None:intergenic |
| TCGGTTCATCGCTGATATAG+AGG | 0.570941 | 3_3:-76743934 | Msa0473990:CDS |
| AATGGAACCTTGAGGAGTTG+AGG | 0.574415 | 3_3:+76742652 | None:intergenic |
| TGAAAATGCAATGTGGGAGT+CGG | 0.574987 | 3_3:-76743439 | Msa0473990:CDS |
| TGTTTGACAATCAAAACGGA+TGG | 0.579451 | 3_3:-76743024 | Msa0473990:three_prime_UTR |
| CGGGGAATGTCAACGATGAG+AGG | 0.581892 | 3_3:-76747257 | Msa0473990:CDS |
| TCAGTAATAGAACCTAATGA+TGG | 0.582255 | 3_3:-76743996 | Msa0473990:CDS |
| AGCTTCATATTCTTTATCGG+CGG | 0.584618 | 3_3:+76743908 | None:intergenic |
| AACTTATGACTGACGAGGAG+CGG | 0.586837 | 3_3:-76747142 | Msa0473990:CDS |
| ACCAAAGAGTTTGAGAGGCA+GGG | 0.588416 | 3_3:-76743295 | Msa0473990:CDS |
| AATAATACAAGTATTGGCAA+TGG | 0.589479 | 3_3:-76743558 | Msa0473990:CDS |
| TCTAGAAATGATGACTATGA+TGG | 0.589821 | 3_3:-76743798 | Msa0473990:CDS |
| TCCTGAGGATCCAACTGCAA+TGG | 0.592648 | 3_3:-76744105 | Msa0473990:CDS |
| TGGTTGAGACAAAATCATCA+AGG | 0.593626 | 3_3:-76742818 | Msa0473990:intron |
| AGGAAAGAGTATGCGAAGCA+AGG | 0.594524 | 3_3:-76747237 | Msa0473990:CDS |
| TACACCGAAGTTATTTAGGT+GGG | 0.595132 | 3_3:-76742873 | Msa0473990:three_prime_UTR |
| CCGAAGTTATTTAGGTGGGT+GGG | 0.595385 | 3_3:-76742869 | Msa0473990:three_prime_UTR |
| GACTGGATGTCCCAATCAGA+AGG | 0.597113 | 3_3:-76743216 | Msa0473990:CDS |
| CGTTGACATTCCCCGACACA+AGG | 0.600701 | 3_3:+76747265 | None:intergenic |
| AGCAGCAGCAGCGATGATGA+GGG | 0.601546 | 3_3:-76743360 | Msa0473990:CDS |
| TGCTTGCAAGACTGAGTGGT+GGG | 0.602807 | 3_3:-76744841 | Msa0473990:CDS |
| TAATACCCTTACAAAGAGGA+AGG | 0.604277 | 3_3:-76744735 | Msa0473990:intron |
| GTTACCTCCTCAACTCCTCA+AGG | 0.605405 | 3_3:-76742659 | Msa0473990:three_prime_UTR |
| AGAATATACATCCCAAGCAT+CGG | 0.605468 | 3_3:-76743749 | Msa0473990:CDS |
| AAAACTATTACGATATTGAG+CGG | 0.607700 | 3_3:+76743323 | None:intergenic |
| CAGTCTCATGAAACTTCCAA+TGG | 0.613298 | 3_3:+76744918 | None:intergenic |
| GTAGGTTCAAGGAAAGTAGG+GGG | 0.613514 | 3_3:-76743596 | Msa0473990:CDS |
| TTGAATGGATCCTTGTGTCG+GGG | 0.613828 | 3_3:-76747275 | Msa0473990:CDS |
| AATGACTCGGTACATTTGAG+AGG | 0.617243 | 3_3:-76743405 | Msa0473990:CDS |
| AGCTCTGGATCATGCCGTGG+TGG | 0.620706 | 3_3:+76745052 | None:intergenic |
| GGTTGAGACAAAATCATCAA+GGG | 0.622964 | 3_3:-76742817 | Msa0473990:intron |
| GATGGCTCTGATGAAGCTAG+AGG | 0.623735 | 3_3:-76743618 | Msa0473990:CDS |
| CATCATGACTAGTAGGACAA+TGG | 0.625661 | 3_3:+76742634 | None:intergenic |
| GTTGGCGGTAATTTCTACCA+CGG | 0.628009 | 3_3:+76744777 | None:intergenic |
| GATGTCCCAATCAGAAGGTG+AGG | 0.630183 | 3_3:-76743211 | Msa0473990:CDS |
| GTCCCAATCAGAAGGTGAGG+AGG | 0.630743 | 3_3:-76743208 | Msa0473990:CDS |
| CCATAAGAAGAGATCACCAA+AGG | 0.633775 | 3_3:-76743121 | Msa0473990:CDS |
| ACGACGACGACGATGGTGAG+TGG | 0.634013 | 3_3:-76743686 | Msa0473990:CDS |
| TTGTTGTGACAACTTCCCCA+AGG | 0.637735 | 3_3:-76744888 | Msa0473990:CDS |
| CAGTGAGGATAAGGATGGCG+CGG | 0.638132 | 3_3:+76747781 | None:intergenic |
| GCGTCGGAAGTAGAAGAGAA+GGG | 0.638583 | 3_3:+76747844 | None:intergenic |
| GTACACCGAAGTTATTTAGG+TGG | 0.638591 | 3_3:-76742874 | Msa0473990:three_prime_UTR |
| GAAGGTGAGGAGGACTCAAG+AGG | 0.641359 | 3_3:-76743198 | Msa0473990:CDS |
| AATGGCCAGCATCCAAAGAG+TGG | 0.641691 | 3_3:-76744087 | Msa0473990:CDS |
| TCAATGCTTGCAAGACTGAG+TGG | 0.642842 | 3_3:-76744845 | Msa0473990:CDS |
| GGTAGGTTCAAGGAAAGTAG+GGG | 0.644041 | 3_3:-76743597 | Msa0473990:CDS |
| TACAAGTCAAAATAGTAAGG+TGG | 0.645026 | 3_3:-76743157 | Msa0473990:CDS |
| ATTCTTCAAACTGAAAAGGG+AGG | 0.647075 | 3_3:+76747748 | None:intergenic |
| TACACTTCCAGAGTCGTGTG+TGG | 0.647458 | 3_3:+76742967 | None:intergenic |
| AATGGTGGTCAGAGCAGACA+CGG | 0.648459 | 3_3:-76743528 | Msa0473990:CDS |
| GGTGAGGAGGACTCAAGAGG+TGG | 0.651623 | 3_3:-76743195 | Msa0473990:CDS |
| AAAACAATCATCATGTTCCG+TGG | 0.652160 | 3_3:-76744794 | Msa0473990:CDS |
| GGCAATGGTCAAGTTAATGG+TGG | 0.652521 | 3_3:-76743543 | Msa0473990:CDS |
| CTATTAATACCCTTACAAAG+AGG | 0.653915 | 3_3:-76744739 | Msa0473990:CDS |
| GCTCTGATGAAGCTAGAGGT+AGG | 0.654685 | 3_3:-76743614 | Msa0473990:CDS |
| AGTGGCGGAGCAAAGTGCGT+CGG | 0.656485 | 3_3:+76747828 | None:intergenic |
| AAATAGAACAGGACCTGCGG+CGG | 0.657187 | 3_3:-76744139 | Msa0473990:CDS |
| GGCGGCAGTGAGGATAAGGA+TGG | 0.660305 | 3_3:+76747776 | None:intergenic |
| TTGATTACGGAGGAGAGTGG+CGG | 0.661451 | 3_3:+76747813 | None:intergenic |
| AGAAAATAGAACAGGACCTG+CGG | 0.664826 | 3_3:-76744142 | Msa0473990:CDS |
| TACCGGAGCTGCCTCCACCA+CGG | 0.667902 | 3_3:-76745066 | Msa0473990:CDS |
| GAGTTGATTACGGAGGAGAG+TGG | 0.668179 | 3_3:+76747810 | None:intergenic |
| GCTAAAGGCATCCATGGACA+CGG | 0.670630 | 3_3:+76743248 | None:intergenic |
| GGAAGTCCTTATGTTAACCG+TGG | 0.676008 | 3_3:-76744029 | Msa0473990:CDS |
| GCGAAGTTGAAAATGCAATG+TGG | 0.678148 | 3_3:-76743446 | Msa0473990:CDS |
| GGAACCTTGAGGAGTTGAGG+AGG | 0.680573 | 3_3:+76742655 | None:intergenic |
| CCATGGACACGGATTTAGTG+CGG | 0.681554 | 3_3:+76743259 | None:intergenic |
| AAAGAGTATGCGAAGCAAGG+TGG | 0.683453 | 3_3:-76747234 | Msa0473990:CDS |
| AAATGATGACTATGATGGTG+AGG | 0.683700 | 3_3:-76743793 | Msa0473990:CDS |
| GGAGGAAAATGGCGGCAGTG+AGG | 0.687637 | 3_3:+76747766 | None:intergenic |
| TGAGGATAAGGATGGCGCGG+CGG | 0.691932 | 3_3:+76747784 | None:intergenic |
| GGATTTGGAGGACAATGACT+CGG | 0.695707 | 3_3:-76743418 | Msa0473990:CDS |
| AAGAGCTCTGGATCATGCCG+TGG | 0.696702 | 3_3:+76745049 | None:intergenic |
| CTGAAAAGGGAGGAAAATGG+CGG | 0.701002 | 3_3:+76747758 | None:intergenic |
| ATGCTTGCAAGACTGAGTGG+TGG | 0.703573 | 3_3:-76744842 | Msa0473990:CDS |
| GCGGAGGGAGTTGATTACGG+AGG | 0.725893 | 3_3:+76747803 | None:intergenic |
| GCGGATGGGAGTAAATCCTG+AGG | 0.727364 | 3_3:-76744120 | Msa0473990:CDS |
| GAAGAAACTTATGACTGACG+AGG | 0.727589 | 3_3:-76747147 | Msa0473990:CDS |
| AGTAGGACAATGGAACCTTG+AGG | 0.763007 | 3_3:+76742644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAATATAAACTTTA+AGG | + | chr3_3:76742908-76742927 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTAAGAT+TGG | - | chr3_3:76742959-76742978 | Msa0473990:three_prime_UTR | 10.0% |
| !!! | ATATTTTTGATTTAATTAGT+TGG | + | chr3_3:76744043-76744062 | None:intergenic | 10.0% |
| !!! | AATTATCATTTTCATTACTT+TGG | + | chr3_3:76743692-76743711 | None:intergenic | 15.0% |
| !! | ATAAACAAAAAATCTACAAA+AGG | + | chr3_3:76743934-76743953 | None:intergenic | 15.0% |
| !!! | TCTACTACAATTTTTATTTT+TGG | + | chr3_3:76744101-76744120 | None:intergenic | 15.0% |
| !!! | TCTCAATTAAAATTGTTTTA+TGG | - | chr3_3:76744534-76744553 | Msa0473990:intron | 15.0% |
| !!! | AAAATTGTTTTATGGTTTAA+AGG | - | chr3_3:76744542-76744561 | Msa0473990:intron | 15.0% |
| !!! | TTAATAGGTATCAAATTTTT+GGG | + | chr3_3:76745692-76745711 | None:intergenic | 15.0% |
| !!! | ATTAATAGGTATCAAATTTT+TGG | + | chr3_3:76745693-76745712 | None:intergenic | 15.0% |
| !! | GTATTATATTAGTAATTTGA+AGG | + | chr3_3:76745998-76746017 | None:intergenic | 15.0% |
| !! | GAATACAAAATTGAAGTAAA+CGG | + | chr3_3:76742849-76742868 | None:intergenic | 20.0% |
| !! | TTTGTTAATTGGTATTTCAT+AGG | - | chr3_3:76742988-76743007 | Msa0473990:three_prime_UTR | 20.0% |
| !! | GATTTATGTATTCGAATTTA+TGG | - | chr3_3:76743449-76743468 | Msa0473990:CDS | 20.0% |
| !! | AACGTGATATACTTAAAATT+TGG | + | chr3_3:76743593-76743612 | None:intergenic | 20.0% |
| !! | TAGACATTAGAAAGTTTAAT+TGG | - | chr3_3:76743627-76743646 | Msa0473990:CDS | 20.0% |
| !! | ATTGTAAATGTTGTATAGAT+AGG | - | chr3_3:76744715-76744734 | Msa0473990:intron | 20.0% |
| !! | AAAAACAGTAGTATTGTTTA+AGG | + | chr3_3:76744775-76744794 | None:intergenic | 20.0% |
| !! | ACAATTACTTAAAACTGATA+AGG | + | chr3_3:76745073-76745092 | None:intergenic | 20.0% |
| !! | ATTTCTTTAATTCTTTCCTT+GGG | + | chr3_3:76745575-76745594 | None:intergenic | 20.0% |
| !!! | TAACTGATAATGAACAATAT+TGG | + | chr3_3:76745775-76745794 | None:intergenic | 20.0% |
| !! | AAACATAAAGAAAATAGAAC+AGG | - | chr3_3:76746294-76746313 | Msa0473990:intron | 20.0% |
| !! | AGGATAAATAATACAAGTAT+TGG | - | chr3_3:76746880-76746899 | Msa0473990:intron | 20.0% |
| !! | TTAAAAACTACAATGAATTC+TGG | + | chr3_3:76747395-76747414 | None:intergenic | 20.0% |
| !! | CTTGATATATTTATTAGAAG+TGG | - | chr3_3:76747835-76747854 | Msa0473990:five_prime_UTR | 20.0% |
| ! | AAATTGAAGTAAACGGAAAA+GGG | + | chr3_3:76742842-76742861 | None:intergenic | 25.0% |
| ! | AAAATTGAAGTAAACGGAAA+AGG | + | chr3_3:76742843-76742862 | None:intergenic | 25.0% |
| !! | TTTAAGGAAAAAGCGTAAAA+GGG | + | chr3_3:76742892-76742911 | None:intergenic | 25.0% |
| !! | ATTGGCTTACATTTGTTAAT+TGG | - | chr3_3:76742977-76742996 | Msa0473990:three_prime_UTR | 25.0% |
| ! | AATTGGTATTTCATAGGAAT+AGG | - | chr3_3:76742994-76743013 | Msa0473990:three_prime_UTR | 25.0% |
| !!! | ATTCGATGTTTTTGTCTTTT+TGG | - | chr3_3:76743035-76743054 | Msa0473990:three_prime_UTR | 25.0% |
| ! | AACAATAAAAGCTATCGTTA+TGG | + | chr3_3:76743129-76743148 | None:intergenic | 25.0% |
| ! | GTATTCGAATTTATGGTTTA+AGG | - | chr3_3:76743456-76743475 | Msa0473990:CDS | 25.0% |
| ! | AATTGTTAAGATTAGAACAG+GGG | + | chr3_3:76743547-76743566 | None:intergenic | 25.0% |
| ! | CAATTGTTAAGATTAGAACA+GGG | + | chr3_3:76743548-76743567 | None:intergenic | 25.0% |
| ! | CTGTTCTAATCTTAACAATT+GGG | - | chr3_3:76743547-76743566 | Msa0473990:CDS | 25.0% |
| !! | GTATCTTTTCTCTCTTTTAT+GGG | + | chr3_3:76744073-76744092 | None:intergenic | 25.0% |
| !! | TGTATCTTTTCTCTCTTTTA+TGG | + | chr3_3:76744074-76744093 | None:intergenic | 25.0% |
| ! | ATTATACCAAACCTTTATAC+AGG | - | chr3_3:76744134-76744153 | Msa0473990:CDS | 25.0% |
| !!! | ATTTATTTTGCCGCAATTTT+GGG | + | chr3_3:76744276-76744295 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATTGAGAAGCA+CGG | + | chr3_3:76744530-76744549 | None:intergenic | 25.0% |
| ! | CAACTTATGTTGTAAAGTAT+TGG | - | chr3_3:76744619-76744638 | Msa0473990:intron | 25.0% |
| !!! | AAGTTTATTCAAGCTGATTT+TGG | - | chr3_3:76744692-76744711 | Msa0473990:intron | 25.0% |
| !!! | TACAAGTTTGTTATAAGTTG+TGG | + | chr3_3:76744925-76744944 | None:intergenic | 25.0% |
| ! | CAATGAAGTAGTTAAATTCT+TGG | + | chr3_3:76745120-76745139 | None:intergenic | 25.0% |
| ! | CAAGAATTTAACTACTTCAT+TGG | - | chr3_3:76745118-76745137 | Msa0473990:CDS | 25.0% |
| !!! | GTCTATGTTTAATTTTGTTG+TGG | - | chr3_3:76745248-76745267 | Msa0473990:intron | 25.0% |
| ! | TTTCTTTAATTCTTTCCTTG+GGG | + | chr3_3:76745574-76745593 | None:intergenic | 25.0% |
| ! | CATTTCTTTAATTCTTTCCT+TGG | + | chr3_3:76745576-76745595 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAATTAAAGAAA+TGG | - | chr3_3:76745574-76745593 | Msa0473990:intron | 25.0% |
| ! | AATCATGAACTGTCATATTT+AGG | - | chr3_3:76745747-76745766 | Msa0473990:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | - | chr3_3:76745804-76745823 | Msa0473990:intron | 25.0% |
| !! | TGAAAATGCTTTTGTGATTA+TGG | + | chr3_3:76745882-76745901 | None:intergenic | 25.0% |
| !! | TGATTGACTTTAATGTTTCA+AGG | - | chr3_3:76746134-76746153 | Msa0473990:intron | 25.0% |
| ! | GTTTAATAGATACCATAACT+AGG | + | chr3_3:76746175-76746194 | None:intergenic | 25.0% |
| ! | TTGTTACCGTTATTATATAC+AGG | - | chr3_3:76746225-76746244 | Msa0473990:intron | 25.0% |
| ! | TTCAGCTTCATATTCTTTAT+CGG | + | chr3_3:76746542-76746561 | None:intergenic | 25.0% |
| !!! | AATAATACAAGTATTGGCAA+TGG | - | chr3_3:76746886-76746905 | Msa0473990:intron | 25.0% |
| ! | AAAACTATTACGATATTGAG+CGG | + | chr3_3:76747124-76747143 | None:intergenic | 25.0% |
| !! | ACTTTGTTTGACAATCAAAA+CGG | - | chr3_3:76747416-76747435 | Msa0473990:intron | 25.0% |
| CTCATTCTTCAAACTGAAAA+GGG | + | chr3_3:76742702-76742721 | None:intergenic | 30.0% | |
| ACTCATTCTTCAAACTGAAA+AGG | + | chr3_3:76742703-76742722 | None:intergenic | 30.0% | |
| AGTTGAAAGAGAGATGAAAT+GGG | + | chr3_3:76742796-76742815 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAGATGAAA+TGG | + | chr3_3:76742797-76742816 | None:intergenic | 30.0% | |
| ! | TTAAGGAAAAAGCGTAAAAG+GGG | + | chr3_3:76742891-76742910 | None:intergenic | 30.0% |
| ! | CTTTAAGGAAAAAGCGTAAA+AGG | + | chr3_3:76742893-76742912 | None:intergenic | 30.0% |
| ! | AAACCGTTGAATCTTTTGAA+TGG | - | chr3_3:76743154-76743173 | Msa0473990:CDS | 30.0% |
| GATCCATTCAAAAGATTCAA+CGG | + | chr3_3:76743160-76743179 | None:intergenic | 30.0% | |
| AAGAGTCTGGTAAAACATTA+AGG | - | chr3_3:76743248-76743267 | Msa0473990:CDS | 30.0% | |
| AGAGTCTGGTAAAACATTAA+GGG | - | chr3_3:76743249-76743268 | Msa0473990:CDS | 30.0% | |
| CAACATCTCAAAGCAATATA+TGG | + | chr3_3:76743419-76743438 | None:intergenic | 30.0% | |
| AAAGCCTTCTTAAACACTTT+AGG | - | chr3_3:76743521-76743540 | Msa0473990:CDS | 30.0% | |
| CCAATTGTTAAGATTAGAAC+AGG | + | chr3_3:76743549-76743568 | None:intergenic | 30.0% | |
| CCTGTTCTAATCTTAACAAT+TGG | - | chr3_3:76743546-76743565 | Msa0473990:CDS | 30.0% | |
| TTGATGCATGATTGATCATA+AGG | - | chr3_3:76743711-76743730 | Msa0473990:CDS | 30.0% | |
| TGATGCATGATTGATCATAA+GGG | - | chr3_3:76743712-76743731 | Msa0473990:CDS | 30.0% | |
| ATCATAAGGGGATAATTTGA+TGG | - | chr3_3:76743725-76743744 | Msa0473990:CDS | 30.0% | |
| AGAGTGATTCAAAATAGACA+TGG | - | chr3_3:76743755-76743774 | Msa0473990:CDS | 30.0% | |
| AAAATAGACATGGAACTGTT+AGG | - | chr3_3:76743765-76743784 | Msa0473990:CDS | 30.0% | |
| TACATTATGAGTATAGAAGC+TGG | - | chr3_3:76743828-76743847 | Msa0473990:CDS | 30.0% | |
| ACATTATGAGTATAGAAGCT+GGG | - | chr3_3:76743829-76743848 | Msa0473990:CDS | 30.0% | |
| !! | TTTTGTTTATCTTGCCATCA+CGG | - | chr3_3:76743944-76743963 | Msa0473990:CDS | 30.0% |
| ! | AGTTCTCTTTGTTCTAAATG+CGG | + | chr3_3:76744253-76744272 | None:intergenic | 30.0% |
| !!! | GATTTATTTTGCCGCAATTT+TGG | + | chr3_3:76744277-76744296 | None:intergenic | 30.0% |
| TCAGACAAAATTAAATGCTG+TGG | - | chr3_3:76744315-76744334 | Msa0473990:intron | 30.0% | |
| ! | ATCCTTTATTTGTGTGTAGT+CGG | - | chr3_3:76744366-76744385 | Msa0473990:intron | 30.0% |
| TTTCTTCTGAATTCTGATCT+GGG | - | chr3_3:76744423-76744442 | Msa0473990:intron | 30.0% | |
| ! | TTTTATGGTTTAAAGGCTCA+TGG | - | chr3_3:76744549-76744568 | Msa0473990:intron | 30.0% |
| ACAAACTTGTATGACAATTC+TGG | - | chr3_3:76744934-76744953 | Msa0473990:CDS | 30.0% | |
| !! | TGGCGATTTTAACAAAATTG+AGG | - | chr3_3:76744954-76744973 | Msa0473990:CDS | 30.0% |
| !!! | GCTTGAAAATTTTCAAGTCA+CGG | + | chr3_3:76745179-76745198 | None:intergenic | 30.0% |
| CTTCAGGCGTATAAAAAAAT+TGG | - | chr3_3:76745431-76745450 | Msa0473990:intron | 30.0% | |
| AACAAGAATTATGTTCCAGT+TGG | - | chr3_3:76745461-76745480 | Msa0473990:intron | 30.0% | |
| !!! | TAGGTATCAAATTTTTGGGT+TGG | + | chr3_3:76745688-76745707 | None:intergenic | 30.0% |
| !! | CTCTTTGTAAGGGTATTAAT+AGG | + | chr3_3:76745707-76745726 | None:intergenic | 30.0% |
| CTATTAATACCCTTACAAAG+AGG | - | chr3_3:76745705-76745724 | Msa0473990:intron | 30.0% | |
| TTGTGATTATGGTCAATTCA+AGG | + | chr3_3:76745871-76745890 | None:intergenic | 30.0% | |
| !!! | CACAAAAGCATTTTCAAATG+TGG | - | chr3_3:76745886-76745905 | Msa0473990:intron | 30.0% |
| ACTAACGAAAGAACATTTGA+TGG | + | chr3_3:76745932-76745951 | None:intergenic | 30.0% | |
| TGTTCTTTCGTTAGTTAGTT+TGG | - | chr3_3:76745937-76745956 | Msa0473990:intron | 30.0% | |
| TAATGTAAGACACACATTCA+AGG | + | chr3_3:76745964-76745983 | None:intergenic | 30.0% | |
| CTAATATAATACACACTCAG+TGG | - | chr3_3:76746006-76746025 | Msa0473990:intron | 30.0% | |
| TTGTGAACATTCAGAAGTTT+CGG | - | chr3_3:76746043-76746062 | Msa0473990:intron | 30.0% | |
| CTAAAATTACTGTTTGCTCT+TGG | - | chr3_3:76746091-76746110 | Msa0473990:intron | 30.0% | |
| GTTTCAAGGACAAAAGAATT+TGG | - | chr3_3:76746148-76746167 | Msa0473990:intron | 30.0% | |
| AAAGAATTTGGTCCTAGTTA+TGG | - | chr3_3:76746160-76746179 | Msa0473990:intron | 30.0% | |
| ATAGGGCCTGTATATAATAA+CGG | + | chr3_3:76746234-76746253 | None:intergenic | 30.0% | |
| TCATTAGGTTCTATTACTGA+CGG | + | chr3_3:76746448-76746467 | None:intergenic | 30.0% | |
| TCAGTAATAGAACCTAATGA+TGG | - | chr3_3:76746448-76746467 | Msa0473990:intron | 30.0% | |
| AATAGAACCTAATGATGGTT+TGG | - | chr3_3:76746453-76746472 | Msa0473990:intron | 30.0% | |
| TAAAGAATATGAAGCTGAAG+AGG | - | chr3_3:76746543-76746562 | Msa0473990:intron | 30.0% | |
| AGTTTGGAAGACTTAGATAT+TGG | - | chr3_3:76746581-76746600 | Msa0473990:intron | 30.0% | |
| TCTAGAAATGATGACTATGA+TGG | - | chr3_3:76746646-76746665 | Msa0473990:intron | 30.0% | |
| ! | AGCTAAATTTAGGACGAATA+TGG | - | chr3_3:76746942-76746961 | Msa0473990:intron | 30.0% |
| ! | GCTAAATTTAGGACGAATAT+GGG | - | chr3_3:76746943-76746962 | Msa0473990:intron | 30.0% |
| !!! | CCTTACTATTTTGACTTGTA+GGG | + | chr3_3:76747287-76747306 | None:intergenic | 30.0% |
| !!! | ACCTTACTATTTTGACTTGT+AGG | + | chr3_3:76747288-76747307 | None:intergenic | 30.0% |
| TACAAGTCAAAATAGTAAGG+TGG | - | chr3_3:76747287-76747306 | Msa0473990:CDS | 30.0% | |
| ATTCTGGTATAGCATTTACT+TGG | + | chr3_3:76747379-76747398 | None:intergenic | 30.0% | |
| TTTGTTCAGATGTGTACTTT+AGG | - | chr3_3:76747516-76747535 | Msa0473990:intron | 30.0% | |
| TTGTTCAGATGTGTACTTTA+GGG | - | chr3_3:76747517-76747536 | Msa0473990:intron | 30.0% | |
| AACCAATCAACAATTTCTTC+AGG | + | chr3_3:76747611-76747630 | None:intergenic | 30.0% | |
| AAACTGAAAAGGGAGGAAAA+TGG | + | chr3_3:76742692-76742711 | None:intergenic | 35.0% | |
| ATTCTTCAAACTGAAAAGGG+AGG | + | chr3_3:76742699-76742718 | None:intergenic | 35.0% | |
| AACTTCAATCCAATCTCTTC+AGG | - | chr3_3:76742812-76742831 | Msa0473990:intron | 35.0% | |
| AAAGCGTAAAAGGGGTTTAA+GGG | + | chr3_3:76742883-76742902 | None:intergenic | 35.0% | |
| ! | AAAAGCGTAAAAGGGGTTTA+AGG | + | chr3_3:76742884-76742903 | None:intergenic | 35.0% |
| TTCACCAAGATTCTAGTCTA+AGG | - | chr3_3:76742930-76742949 | Msa0473990:three_prime_UTR | 35.0% | |
| ACAACCTTAGACTAGAATCT+TGG | + | chr3_3:76742937-76742956 | None:intergenic | 35.0% | |
| TTCAGAAATGTTGTGCCTTT+AGG | - | chr3_3:76743058-76743077 | Msa0473990:three_prime_UTR | 35.0% | |
| ! | TTTTGAATGGATCCTTGTGT+CGG | - | chr3_3:76743167-76743186 | Msa0473990:CDS | 35.0% |
| TCGACAAACAGTTATTAGAC+GGG | + | chr3_3:76743365-76743384 | None:intergenic | 35.0% | |
| GTCGACAAACAGTTATTAGA+CGG | + | chr3_3:76743366-76743385 | None:intergenic | 35.0% | |
| GATGCATGATTGATCATAAG+GGG | - | chr3_3:76743713-76743732 | Msa0473990:CDS | 35.0% | |
| GATTGAGATTCTGTCAAGAA+GGG | - | chr3_3:76743787-76743806 | Msa0473990:CDS | 35.0% | |
| ATTGAGATTCTGTCAAGAAG+GGG | - | chr3_3:76743788-76743807 | Msa0473990:CDS | 35.0% | |
| TTTGTTTATCTTGCCATCAC+GGG | - | chr3_3:76743945-76743964 | Msa0473990:CDS | 35.0% | |
| AAGCTTCCTGTATAAAGGTT+TGG | + | chr3_3:76744143-76744162 | None:intergenic | 35.0% | |
| AAAGAGAACTCCCAAAATTG+CGG | - | chr3_3:76744263-76744282 | Msa0473990:intron | 35.0% | |
| AATTGCGGCAAAATAAATCC+AGG | - | chr3_3:76744278-76744297 | Msa0473990:intron | 35.0% | |
| TTTATTTGTGTGTAGTCGGT+GGG | - | chr3_3:76744370-76744389 | Msa0473990:intron | 35.0% | |
| GTTTCTTCTGAATTCTGATC+TGG | - | chr3_3:76744422-76744441 | Msa0473990:intron | 35.0% | |
| !! | TTTTAATTGAGAAGCACGGT+GGG | + | chr3_3:76744526-76744545 | None:intergenic | 35.0% |
| !!! | ATTTTAATTGAGAAGCACGG+TGG | + | chr3_3:76744527-76744546 | None:intergenic | 35.0% |
| GTGAAAGTAGTAAGCAGAAT+TGG | - | chr3_3:76744836-76744855 | Msa0473990:CDS | 35.0% | |
| ! | TTTGTTATAAGTTGTGGCCA+TGG | + | chr3_3:76744919-76744938 | None:intergenic | 35.0% |
| GCTTAAGAAATATGAGCTAC+CGG | - | chr3_3:76745361-76745380 | Msa0473990:intron | 35.0% | |
| TGCAAAATATGCATCTCCAT+TGG | - | chr3_3:76745510-76745529 | Msa0473990:intron | 35.0% | |
| AAAACAATCATCATGTTCCG+TGG | - | chr3_3:76745650-76745669 | Msa0473990:intron | 35.0% | |
| !!! | GTATCAAATTTTTGGGTTGG+CGG | + | chr3_3:76745685-76745704 | None:intergenic | 35.0% |
| TAATACCCTTACAAAGAGGA+AGG | - | chr3_3:76745709-76745728 | Msa0473990:intron | 35.0% | |
| TCTTACCTTCCTCTTTGTAA+GGG | + | chr3_3:76745717-76745736 | None:intergenic | 35.0% | |
| ATCTTACCTTCCTCTTTGTA+AGG | + | chr3_3:76745718-76745737 | None:intergenic | 35.0% | |
| ! | TGATGGACAAAACTGACTAA+CGG | + | chr3_3:76745915-76745934 | None:intergenic | 35.0% |
| GTGTCTTACATTAGTCAGTT+TGG | - | chr3_3:76745971-76745990 | Msa0473990:intron | 35.0% | |
| TTATATACAGGCCCTATTCA+AGG | - | chr3_3:76746237-76746256 | Msa0473990:intron | 35.0% | |
| AATGCCATTGACAAGAAAGA+TGG | - | chr3_3:76746394-76746413 | Msa0473990:intron | 35.0% | |
| ACTTCCATCTTTCTTGTCAA+TGG | + | chr3_3:76746401-76746420 | None:intergenic | 35.0% | |
| AGCTTCATATTCTTTATCGG+CGG | + | chr3_3:76746539-76746558 | None:intergenic | 35.0% | |
| ! | TCCAAACTCTTCCTTTTCTT+TGG | + | chr3_3:76746569-76746588 | None:intergenic | 35.0% |
| TATTGGAACAGAGAAGAGTA+TGG | - | chr3_3:76746598-76746617 | Msa0473990:intron | 35.0% | |
| ! | AAATGATGACTATGATGGTG+AGG | - | chr3_3:76746651-76746670 | Msa0473990:intron | 35.0% |
| AGAATATACATCCCAAGCAT+CGG | - | chr3_3:76746695-76746714 | Msa0473990:intron | 35.0% | |
| ! | GATGTTGACAGCAATTTTGA+TGG | - | chr3_3:76746808-76746827 | Msa0473990:intron | 35.0% |
| ATTGGCAATGGTCAAGTTAA+TGG | - | chr3_3:76746898-76746917 | Msa0473990:intron | 35.0% | |
| CGAAGTTGAAAATGCAATGT+GGG | - | chr3_3:76746999-76747018 | Msa0473990:intron | 35.0% | |
| CCCTACAAGTCAAAATAGTA+AGG | - | chr3_3:76747284-76747303 | Msa0473990:CDS | 35.0% | |
| TGTTTGACAATCAAAACGGA+TGG | - | chr3_3:76747420-76747439 | Msa0473990:intron | 35.0% | |
| TGTGTACACCGAAGTTATTT+AGG | - | chr3_3:76747567-76747586 | Msa0473990:intron | 35.0% | |
| TACACCGAAGTTATTTAGGT+GGG | - | chr3_3:76747571-76747590 | Msa0473990:intron | 35.0% | |
| TGCCTGAAGAAATTGTTGAT+TGG | - | chr3_3:76747606-76747625 | Msa0473990:intron | 35.0% | |
| TGGTTGAGACAAAATCATCA+AGG | - | chr3_3:76747626-76747645 | Msa0473990:intron | 35.0% | |
| GGTTGAGACAAAATCATCAA+GGG | - | chr3_3:76747627-76747646 | Msa0473990:intron | 35.0% | |
| TGAGAAGGAATAACAGTAAG+AGG | + | chr3_3:76747672-76747691 | None:intergenic | 35.0% | |
| GAGGTAACATTATTGTGAGA+AGG | + | chr3_3:76747687-76747706 | None:intergenic | 35.0% | |
| TGAGAAGGAATAACAGTAAG+AGG | + | chr3_3:76747672-76747691 | None:intergenic | 35.0% | |
| GAGGTAACATTATTGTGAGA+AGG | + | chr3_3:76747687-76747706 | None:intergenic | 35.0% | |
| TCAAGTACATCATGACTAGT+AGG | + | chr3_3:76747820-76747839 | None:intergenic | 35.0% | |
| TAGAAGAGAAGGGTTTCAAG+GGG | + | chr3_3:76742593-76742612 | None:intergenic | 40.0% | |
| GTAGAAGAGAAGGGTTTCAA+GGG | + | chr3_3:76742594-76742613 | None:intergenic | 40.0% | |
| AGTAGAAGAGAAGGGTTTCA+AGG | + | chr3_3:76742595-76742614 | None:intergenic | 40.0% | |
| ! | GAGAGATGAAATGGGTTTGA+GGG | + | chr3_3:76742788-76742807 | None:intergenic | 40.0% |
| ! | AGAGAGATGAAATGGGTTTG+AGG | + | chr3_3:76742789-76742808 | None:intergenic | 40.0% |
| AAGGGTTTACCTGAAGAGAT+TGG | + | chr3_3:76742824-76742843 | None:intergenic | 40.0% | |
| !! | AATGTTGTGCCTTTAGGACA+AGG | - | chr3_3:76743064-76743083 | Msa0473990:three_prime_UTR | 40.0% |
| TGCTCTATTCCTTGTCCTAA+AGG | + | chr3_3:76743076-76743095 | None:intergenic | 40.0% | |
| TTTGAATGGATCCTTGTGTC+GGG | - | chr3_3:76743168-76743187 | Msa0473990:CDS | 40.0% | |
| AGAAGAATGCAGAAAGAGTC+TGG | - | chr3_3:76743235-76743254 | Msa0473990:CDS | 40.0% | |
| GAAGAAACTTATGACTGACG+AGG | - | chr3_3:76743297-76743316 | Msa0473990:CDS | 40.0% | |
| GGATTGAGATTCTGTCAAGA+AGG | - | chr3_3:76743786-76743805 | Msa0473990:CDS | 40.0% | |
| GTATAGAAGCTGGGTTTAAC+AGG | - | chr3_3:76743838-76743857 | Msa0473990:CDS | 40.0% | |
| !! | TGGGTTTAACAGGTGTTGAA+TGG | - | chr3_3:76743848-76743867 | Msa0473990:CDS | 40.0% |
| ACAAAAGGCTAGCGAAAACA+TGG | + | chr3_3:76743919-76743938 | None:intergenic | 40.0% | |
| TTGTTTATCTTGCCATCACG+GGG | - | chr3_3:76743946-76743965 | Msa0473990:CDS | 40.0% | |
| AGCTCAAGCTTCCTGTATAA+AGG | + | chr3_3:76744148-76744167 | None:intergenic | 40.0% | |
| TGGTAAAGCTTTCGTCAATG+CGG | + | chr3_3:76744205-76744224 | None:intergenic | 40.0% | |
| ! | CTTTGTTCTAAATGCGGCAT+GGG | + | chr3_3:76744247-76744266 | None:intergenic | 40.0% |
| ! | TCTTTGTTCTAAATGCGGCA+TGG | + | chr3_3:76744248-76744267 | None:intergenic | 40.0% |
| CTGAACAGAAATTACCTTCC+TGG | + | chr3_3:76744299-76744318 | None:intergenic | 40.0% | |
| ! | CACCGACTACACACAAATAA+AGG | + | chr3_3:76744371-76744390 | None:intergenic | 40.0% |
| ! | CTTTATTTGTGTGTAGTCGG+TGG | - | chr3_3:76744369-76744388 | Msa0473990:intron | 40.0% |
| GGCCAAAGTCATGAAAGTTT+GGG | - | chr3_3:76744444-76744463 | Msa0473990:intron | 40.0% | |
| ! | TTTAATTGAGAAGCACGGTG+GGG | + | chr3_3:76744525-76744544 | None:intergenic | 40.0% |
| GTGCTCGTTATATGATCTCT+TGG | - | chr3_3:76745270-76745289 | Msa0473990:intron | 40.0% | |
| TTTGCCTGCAAACAGTTGAA+GGG | + | chr3_3:76745314-76745333 | None:intergenic | 40.0% | |
| TTTATACGCCTGAAGCTGTT+CGG | + | chr3_3:76745426-76745445 | None:intergenic | 40.0% | |
| CAGTCTCATGAAACTTCCAA+TGG | + | chr3_3:76745529-76745548 | None:intergenic | 40.0% | |
| ATGGTCAATTCAAGGACTAC+AGG | + | chr3_3:76745863-76745882 | None:intergenic | 40.0% | |
| !! | CTCAAATCTGGCCTTGAATA+GGG | + | chr3_3:76746251-76746270 | None:intergenic | 40.0% |
| ! | TTCAAGAGCTTGCTCAAATC+TGG | + | chr3_3:76746263-76746282 | None:intergenic | 40.0% |
| AGAAAATAGAACAGGACCTG+CGG | - | chr3_3:76746302-76746321 | Msa0473990:intron | 40.0% | |
| ! | GTCAATGGCATTGAAGAAAG+TGG | + | chr3_3:76746386-76746405 | None:intergenic | 40.0% |
| TTGTCTCCACGGTTAACATA+AGG | + | chr3_3:76746424-76746443 | None:intergenic | 40.0% | |
| ! | AGAACCTAATGATGGTTTGG+AGG | - | chr3_3:76746456-76746475 | Msa0473990:intron | 40.0% |
| GATTCCTCCAAACCATCATT+AGG | + | chr3_3:76746463-76746482 | None:intergenic | 40.0% | |
| GCCAAAGAAAAGGAAGAGTT+TGG | - | chr3_3:76746565-76746584 | Msa0473990:intron | 40.0% | |
| ATTCTCTTCATCGTCGCTAT+CGG | + | chr3_3:76746725-76746744 | None:intergenic | 40.0% | |
| AGGTAGGTTCAAGGAAAGTA+GGG | - | chr3_3:76746846-76746865 | Msa0473990:intron | 40.0% | |
| GACACGGTGAAGCTAAATTT+AGG | - | chr3_3:76746932-76746951 | Msa0473990:intron | 40.0% | |
| GCGAAGTTGAAAATGCAATG+TGG | - | chr3_3:76746998-76747017 | Msa0473990:intron | 40.0% | |
| TGAAAATGCAATGTGGGAGT+CGG | - | chr3_3:76747005-76747024 | Msa0473990:intron | 40.0% | |
| !! | AATGACTCGGTACATTTGAG+AGG | - | chr3_3:76747039-76747058 | Msa0473990:intron | 40.0% |
| AATGCACCAAAGAGTTTGAG+AGG | - | chr3_3:76747144-76747163 | Msa0473990:CDS | 40.0% | |
| ! | CCTTTGGTGATCTCTTCTTA+TGG | + | chr3_3:76747326-76747345 | None:intergenic | 40.0% |
| CCATAAGAAGAGATCACCAA+AGG | - | chr3_3:76747323-76747342 | Msa0473990:CDS | 40.0% | |
| AAAGGAAGCTGATGAAGCTT+GGG | - | chr3_3:76747341-76747360 | Msa0473990:CDS | 40.0% | |
| ! | GTTTCTGAAAAACGAGAGGT+GGG | + | chr3_3:76747458-76747477 | None:intergenic | 40.0% |
| ! | TGTGGTTTCTGAAAAACGAG+AGG | + | chr3_3:76747462-76747481 | None:intergenic | 40.0% |
| GTACACCGAAGTTATTTAGG+TGG | - | chr3_3:76747570-76747589 | Msa0473990:intron | 40.0% | |
| AATGTTACCTCCTCAACTCA+AGG | - | chr3_3:76747696-76747715 | Msa0473990:CDS | 40.0% | |
| !! | AATAGAACCTTGAGTTGAGG+AGG | + | chr3_3:76747706-76747725 | None:intergenic | 40.0% |
| ! | GACAATAGAACCTTGAGTTG+AGG | + | chr3_3:76747709-76747728 | None:intergenic | 40.0% |
| CTCAAGGTTCTATTGTCCTA+CGG | - | chr3_3:76747712-76747731 | Msa0473990:exon | 40.0% | |
| TCAAGGTTCTATTGTCCTAC+GGG | - | chr3_3:76747713-76747732 | Msa0473990:exon | 40.0% | |
| TACATTAAGCTTCATCCCGT+AGG | + | chr3_3:76747731-76747750 | None:intergenic | 40.0% | |
| CATCATGACTAGTAGGACAA+TGG | + | chr3_3:76747813-76747832 | None:intergenic | 40.0% | |
| CTGAAAAGGGAGGAAAATGG+CGG | + | chr3_3:76742689-76742708 | None:intergenic | 45.0% | |
| TTGAATGGATCCTTGTGTCG+GGG | - | chr3_3:76743169-76743188 | Msa0473990:CDS | 45.0% | |
| ! | AGGAAAGAGTATGCGAAGCA+AGG | - | chr3_3:76743207-76743226 | Msa0473990:CDS | 45.0% |
| ! | AAAGAGTATGCGAAGCAAGG+TGG | - | chr3_3:76743210-76743229 | Msa0473990:CDS | 45.0% |
| AACTTATGACTGACGAGGAG+CGG | - | chr3_3:76743302-76743321 | Msa0473990:CDS | 45.0% | |
| ! | GGGGCCTAAAGTGTTTAAGA+AGG | + | chr3_3:76743528-76743547 | None:intergenic | 45.0% |
| TGTTTATCTTGCCATCACGG+GGG | - | chr3_3:76743947-76743966 | Msa0473990:CDS | 45.0% | |
| CTTTCGTCAATGCGGTTTCA+GGG | + | chr3_3:76744197-76744216 | None:intergenic | 45.0% | |
| GCGGCAAAATAAATCCAGGA+AGG | - | chr3_3:76744282-76744301 | Msa0473990:intron | 45.0% | |
| AGAATCGAACTTCGTGATCG+AGG | + | chr3_3:76744344-76744363 | None:intergenic | 45.0% | |
| GGGCCAAAGTCATGAAAGTT+TGG | - | chr3_3:76744443-76744462 | Msa0473990:intron | 45.0% | |
| GGCCCAAACTTTCATGACTT+TGG | + | chr3_3:76744449-76744468 | None:intergenic | 45.0% | |
| ACTTTGATGCCTGTGCGAAA+TGG | - | chr3_3:76744876-76744895 | Msa0473990:CDS | 45.0% | |
| CTTTGATGCCTGTGCGAAAT+GGG | - | chr3_3:76744877-76744896 | Msa0473990:CDS | 45.0% | |
| TTTGATGCCTGTGCGAAATG+GGG | - | chr3_3:76744878-76744897 | Msa0473990:CDS | 45.0% | |
| GGCAAGTTCAAGTGTTTCCA+TGG | - | chr3_3:76744899-76744918 | Msa0473990:CDS | 45.0% | |
| AAGAATGCGTGCATGTGTAC+TGG | - | chr3_3:76745006-76745025 | Msa0473990:CDS | 45.0% | |
| CTTTGCCTGCAAACAGTTGA+AGG | + | chr3_3:76745315-76745334 | None:intergenic | 45.0% | |
| TTATACGCCTGAAGCTGTTC+GGG | + | chr3_3:76745425-76745444 | None:intergenic | 45.0% | |
| ! | TATGTTCCAGTTGGTGTTCG+TGG | - | chr3_3:76745470-76745489 | Msa0473990:intron | 45.0% |
| AATACTCCACGAACACCAAC+TGG | + | chr3_3:76745479-76745498 | None:intergenic | 45.0% | |
| ! | GTTGGTGTTCGTGGAGTATT+TGG | - | chr3_3:76745479-76745498 | Msa0473990:intron | 45.0% |
| TTGTTGTGACAACTTCCCCA+AGG | - | chr3_3:76745556-76745575 | Msa0473990:intron | 45.0% | |
| TCAATGCTTGCAAGACTGAG+TGG | - | chr3_3:76745599-76745618 | Msa0473990:intron | 45.0% | |
| GTTGGCGGTAATTTCTACCA+CGG | + | chr3_3:76745670-76745689 | None:intergenic | 45.0% | |
| !! | GCTCAAATCTGGCCTTGAAT+AGG | + | chr3_3:76746252-76746271 | None:intergenic | 45.0% |
| AGAAAGTGGAAGCCACTCTT+TGG | + | chr3_3:76746372-76746391 | None:intergenic | 45.0% | |
| GGAAGTCCTTATGTTAACCG+TGG | - | chr3_3:76746415-76746434 | Msa0473990:intron | 45.0% | |
| CTGAACAGGAAGAGCTAGAT+CGG | - | chr3_3:76746491-76746510 | Msa0473990:intron | 45.0% | |
| TCGGTTCATCGCTGATATAG+AGG | - | chr3_3:76746510-76746529 | Msa0473990:intron | 45.0% | |
| AGCTGAAGAGGCCAAAGAAA+AGG | - | chr3_3:76746555-76746574 | Msa0473990:intron | 45.0% | |
| ! | TGGAACAGAGAAGAGTATGG+TGG | - | chr3_3:76746601-76746620 | Msa0473990:intron | 45.0% |
| ! | GACTATGATGGTGAGGTTAG+AGG | - | chr3_3:76746658-76746677 | Msa0473990:intron | 45.0% |
| AGGTTAGAGGCTCAAGAGTT+CGG | - | chr3_3:76746671-76746690 | Msa0473990:intron | 45.0% | |
| GCTGTCAACATCACTGTCAT+CGG | + | chr3_3:76746800-76746819 | None:intergenic | 45.0% | |
| TGAAGCTAGAGGTAGGTTCA+AGG | - | chr3_3:76746837-76746856 | Msa0473990:intron | 45.0% | |
| GAGGTAGGTTCAAGGAAAGT+AGG | - | chr3_3:76746845-76746864 | Msa0473990:intron | 45.0% | |
| GGTAGGTTCAAGGAAAGTAG+GGG | - | chr3_3:76746847-76746866 | Msa0473990:intron | 45.0% | |
| GTAGGTTCAAGGAAAGTAGG+GGG | - | chr3_3:76746848-76746867 | Msa0473990:intron | 45.0% | |
| GGCAATGGTCAAGTTAATGG+TGG | - | chr3_3:76746901-76746920 | Msa0473990:intron | 45.0% | |
| GGATTTGGAGGACAATGACT+CGG | - | chr3_3:76747026-76747045 | Msa0473990:intron | 45.0% | |
| ACCAAAGAGTTTGAGAGGCA+GGG | - | chr3_3:76747149-76747168 | Msa0473990:CDS | 45.0% | |
| CAAGCTTCATCAGCTTCCTT+TGG | + | chr3_3:76747342-76747361 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGATGAAGCT+TGG | - | chr3_3:76747340-76747359 | Msa0473990:CDS | 45.0% | |
| ! | GGTTTCTGAAAAACGAGAGG+TGG | + | chr3_3:76747459-76747478 | None:intergenic | 45.0% |
| ACCGAAGTTATTTAGGTGGG+TGG | - | chr3_3:76747574-76747593 | Msa0473990:intron | 45.0% | |
| CCCACCCACCTAAATAACTT+CGG | + | chr3_3:76747578-76747597 | None:intergenic | 45.0% | |
| CCGAAGTTATTTAGGTGGGT+GGG | - | chr3_3:76747575-76747594 | Msa0473990:intron | 45.0% | |
| AATGGAACCTTGAGGAGTTG+AGG | + | chr3_3:76747795-76747814 | None:intergenic | 45.0% | |
| AGTAGGACAATGGAACCTTG+AGG | + | chr3_3:76747803-76747822 | None:intergenic | 45.0% | |
| GCGTCGGAAGTAGAAGAGAA+GGG | + | chr3_3:76742603-76742622 | None:intergenic | 50.0% | |
| TGCGTCGGAAGTAGAAGAGA+AGG | + | chr3_3:76742604-76742623 | None:intergenic | 50.0% | |
| TTGATTACGGAGGAGAGTGG+CGG | + | chr3_3:76742634-76742653 | None:intergenic | 50.0% | |
| ! | GAGTTGATTACGGAGGAGAG+TGG | + | chr3_3:76742637-76742656 | None:intergenic | 50.0% |
| AAATGGCGGCAGTGAGGATA+AGG | + | chr3_3:76742675-76742694 | None:intergenic | 50.0% | |
| GTTCTTACAAACCCCCGTGA+TGG | + | chr3_3:76743961-76743980 | None:intergenic | 50.0% | |
| GCTTTCGTCAATGCGGTTTC+AGG | + | chr3_3:76744198-76744217 | None:intergenic | 50.0% | |
| !! | GTTACTGACTCGACTGGCTT+TGG | + | chr3_3:76744225-76744244 | None:intergenic | 50.0% |
| TGGGATGAGATGTGTGTGGT+GGG | - | chr3_3:76744389-76744408 | Msa0473990:intron | 50.0% | |
| GTTTGGGCCCCAAATATCTG+AGG | - | chr3_3:76744460-76744479 | Msa0473990:intron | 50.0% | |
| CACAGGGCCTCAGATATTTG+GGG | + | chr3_3:76744470-76744489 | None:intergenic | 50.0% | |
| GCACAGGGCCTCAGATATTT+GGG | + | chr3_3:76744471-76744490 | None:intergenic | 50.0% | |
| AGCACAGGGCCTCAGATATT+TGG | + | chr3_3:76744472-76744491 | None:intergenic | 50.0% | |
| CTTAGAGTGACTGATCGACG+AGG | + | chr3_3:76744744-76744763 | None:intergenic | 50.0% | |
| CCTGCAAACAGTTGAAGGGT+AGG | + | chr3_3:76745310-76745329 | None:intergenic | 50.0% | |
| CCTACCCTTCAACTGTTTGC+AGG | - | chr3_3:76745307-76745326 | Msa0473990:intron | 50.0% | |
| TGTTCGGGTGTAAAGAGCTC+TGG | + | chr3_3:76745410-76745429 | None:intergenic | 50.0% | |
| CTTTACACCCGAACAGCTTC+AGG | - | chr3_3:76745415-76745434 | Msa0473990:intron | 50.0% | |
| ! | GGTGTTCGTGGAGTATTTGG+AGG | - | chr3_3:76745482-76745501 | Msa0473990:intron | 50.0% |
| ATGCTTGCAAGACTGAGTGG+TGG | - | chr3_3:76745602-76745621 | Msa0473990:intron | 50.0% | |
| TGCTTGCAAGACTGAGTGGT+GGG | - | chr3_3:76745603-76745622 | Msa0473990:intron | 50.0% | |
| AAATAGAACAGGACCTGCGG+CGG | - | chr3_3:76746305-76746324 | Msa0473990:intron | 50.0% | |
| TCCTGAGGATCCAACTGCAA+TGG | - | chr3_3:76746339-76746358 | Msa0473990:intron | 50.0% | |
| AATGGCCAGCATCCAAAGAG+TGG | - | chr3_3:76746357-76746376 | Msa0473990:intron | 50.0% | |
| TTACTGACGGCTTGTCTCCA+CGG | + | chr3_3:76746435-76746454 | None:intergenic | 50.0% | |
| GGAATCAGATCCTGCTGAAC+AGG | - | chr3_3:76746477-76746496 | Msa0473990:intron | 50.0% | |
| !! | TCTAGCTCTTCCTGTTCAGC+AGG | + | chr3_3:76746490-76746509 | None:intergenic | 50.0% |
| !! | GATGGCTCTGATGAAGCTAG+AGG | - | chr3_3:76746826-76746845 | Msa0473990:intron | 50.0% |
| GCTCTGATGAAGCTAGAGGT+AGG | - | chr3_3:76746830-76746849 | Msa0473990:intron | 50.0% | |
| AAAGTAGGGGGAGAAGAGAG+AGG | - | chr3_3:76746860-76746879 | Msa0473990:intron | 50.0% | |
| AATGGTGGTCAGAGCAGACA+CGG | - | chr3_3:76746916-76746935 | Msa0473990:intron | 50.0% | |
| TGCAATGTGGGAGTCGGATT+TGG | - | chr3_3:76747011-76747030 | Msa0473990:intron | 50.0% | |
| AATGTGGGAGTCGGATTTGG+AGG | - | chr3_3:76747014-76747033 | Msa0473990:intron | 50.0% | |
| CACCAAAGAGTTTGAGAGGC+AGG | - | chr3_3:76747148-76747167 | Msa0473990:CDS | 50.0% | |
| TCCCTGCCTCTCAAACTCTT+TGG | + | chr3_3:76747153-76747172 | None:intergenic | 50.0% | |
| CCATGGACACGGATTTAGTG+CGG | + | chr3_3:76747188-76747207 | None:intergenic | 50.0% | |
| !! | GCTAAAGGCATCCATGGACA+CGG | + | chr3_3:76747199-76747218 | None:intergenic | 50.0% |
| GTGTCCATGGATGCCTTTAG+CGG | - | chr3_3:76747198-76747217 | Msa0473990:CDS | 50.0% | |
| !! | CAAACCGCTAAAGGCATCCA+TGG | + | chr3_3:76747205-76747224 | None:intergenic | 50.0% |
| CATGGATGCCTTTAGCGGTT+TGG | - | chr3_3:76747203-76747222 | Msa0473990:CDS | 50.0% | |
| CCAGTCTTCCAAACCGCTAA+AGG | + | chr3_3:76747214-76747233 | None:intergenic | 50.0% | |
| ! | CCTTTAGCGGTTTGGAAGAC+TGG | - | chr3_3:76747211-76747230 | Msa0473990:CDS | 50.0% |
| GACTGGATGTCCCAATCAGA+AGG | - | chr3_3:76747228-76747247 | Msa0473990:CDS | 50.0% | |
| GATGTCCCAATCAGAAGGTG+AGG | - | chr3_3:76747233-76747252 | Msa0473990:CDS | 50.0% | |
| GTCCTCCTCACCTTCTGATT+GGG | + | chr3_3:76747241-76747260 | None:intergenic | 50.0% | |
| AGTCCTCCTCACCTTCTGAT+TGG | + | chr3_3:76747242-76747261 | None:intergenic | 50.0% | |
| GGACTCAAGAGGTGGTGATA+AGG | - | chr3_3:76747257-76747276 | Msa0473990:CDS | 50.0% | |
| TGAAGCTTGGGACAGTGACT+AGG | - | chr3_3:76747353-76747372 | Msa0473990:CDS | 50.0% | |
| TCAGAAACCACACACGACTC+TGG | - | chr3_3:76747470-76747489 | Msa0473990:intron | 50.0% | |
| TACACTTCCAGAGTCGTGTG+TGG | + | chr3_3:76747480-76747499 | None:intergenic | 50.0% | |
| GTTACCTCCTCAACTCCTCA+AGG | - | chr3_3:76747785-76747804 | Msa0473990:five_prime_UTR | 50.0% | |
| CAGTGAGGATAAGGATGGCG+CGG | + | chr3_3:76742666-76742685 | None:intergenic | 55.0% | |
| CGTTGACATTCCCCGACACA+AGG | + | chr3_3:76743182-76743201 | None:intergenic | 55.0% | |
| CGGGGAATGTCAACGATGAG+AGG | - | chr3_3:76743187-76743206 | Msa0473990:CDS | 55.0% | |
| !! | GCATGGGTTACTGACTCGAC+TGG | + | chr3_3:76744231-76744250 | None:intergenic | 55.0% |
| TCGGTGGGATGAGATGTGTG+TGG | - | chr3_3:76744385-76744404 | Msa0473990:intron | 55.0% | |
| GTGGGATGAGATGTGTGTGG+TGG | - | chr3_3:76744388-76744407 | Msa0473990:intron | 55.0% | |
| GGGATGAGATGTGTGTGGTG+GGG | - | chr3_3:76744390-76744409 | Msa0473990:intron | 55.0% | |
| GGATGAGATGTGTGTGGTGG+GGG | - | chr3_3:76744391-76744410 | Msa0473990:intron | 55.0% | |
| ! | AGATGTGTGTGGTGGGGGAA+GGG | - | chr3_3:76744396-76744415 | Msa0473990:intron | 55.0% |
| GTAGGCTGAGCTACAGCACA+GGG | + | chr3_3:76744486-76744505 | None:intergenic | 55.0% | |
| TGTAGGCTGAGCTACAGCAC+AGG | + | chr3_3:76744487-76744506 | None:intergenic | 55.0% | |
| TGCTGTAGCTCAGCCTACAC+AGG | - | chr3_3:76744488-76744507 | Msa0473990:intron | 55.0% | |
| GAACTTGCCCCATTTCGCAC+AGG | + | chr3_3:76744888-76744907 | None:intergenic | 55.0% | |
| !! | AAGAGCTCTGGATCATGCCG+TGG | + | chr3_3:76745398-76745417 | None:intergenic | 55.0% |
| GCGGATGGGAGTAAATCCTG+AGG | - | chr3_3:76746324-76746343 | Msa0473990:intron | 55.0% | |
| GCCATTGCAGTTGGATCCTC+AGG | + | chr3_3:76746343-76746362 | None:intergenic | 55.0% | |
| TGGATGCTGGCCATTGCAGT+TGG | + | chr3_3:76746352-76746371 | None:intergenic | 55.0% | |
| GGAAGCCACTCTTTGGATGC+TGG | + | chr3_3:76746365-76746384 | None:intergenic | 55.0% | |
| CTATCGGCAGTCCGATGCTT+GGG | + | chr3_3:76746709-76746728 | None:intergenic | 55.0% | |
| TCTAACGACGACGACGACGA+TGG | - | chr3_3:76746751-76746770 | Msa0473990:intron | 55.0% | |
| GACGATGGTGAGTGGCATCA+TGG | - | chr3_3:76746766-76746785 | Msa0473990:intron | 55.0% | |
| AGCAGCAGCAGCGATGATGA+GGG | - | chr3_3:76747084-76747103 | Msa0473990:intron | 55.0% | |
| AGTTTGAGAGGCAGGGAAGC+AGG | - | chr3_3:76747156-76747175 | Msa0473990:CDS | 55.0% | |
| CCGCACTAAATCCGTGTCCA+TGG | - | chr3_3:76747185-76747204 | Msa0473990:CDS | 55.0% | |
| GTCCCAATCAGAAGGTGAGG+AGG | - | chr3_3:76747236-76747255 | Msa0473990:CDS | 55.0% | |
| GAAGGTGAGGAGGACTCAAG+AGG | - | chr3_3:76747246-76747265 | Msa0473990:CDS | 55.0% | |
| GGAACCTTGAGGAGTTGAGG+AGG | + | chr3_3:76747792-76747811 | None:intergenic | 55.0% | |
| ! | AGTGGCGGAGCAAAGTGCGT+CGG | + | chr3_3:76742619-76742638 | None:intergenic | 60.0% |
| ! | GCGGAGGGAGTTGATTACGG+AGG | + | chr3_3:76742644-76742663 | None:intergenic | 60.0% |
| ! | GCGGCGGAGGGAGTTGATTA+CGG | + | chr3_3:76742647-76742666 | None:intergenic | 60.0% |
| TGAGGATAAGGATGGCGCGG+CGG | + | chr3_3:76742663-76742682 | None:intergenic | 60.0% | |
| GGCGGCAGTGAGGATAAGGA+TGG | + | chr3_3:76742671-76742690 | None:intergenic | 60.0% | |
| GGAGGAAAATGGCGGCAGTG+AGG | + | chr3_3:76742681-76742700 | None:intergenic | 60.0% | |
| ! | GAGATGTGTGTGGTGGGGGA+AGG | - | chr3_3:76744395-76744414 | Msa0473990:intron | 60.0% |
| AGCTCAGCCTACACAGGCAC+AGG | - | chr3_3:76744494-76744513 | Msa0473990:intron | 60.0% | |
| GCTCAGCCTACACAGGCACA+GGG | - | chr3_3:76744495-76744514 | Msa0473990:intron | 60.0% | |
| ! | ATTGAGAAGCACGGTGGGGC+CGG | + | chr3_3:76744521-76744540 | None:intergenic | 60.0% |
| TCTGGATCATGCCGTGGTGG+AGG | + | chr3_3:76745392-76745411 | None:intergenic | 60.0% | |
| !! | AGCTCTGGATCATGCCGTGG+TGG | + | chr3_3:76745395-76745414 | None:intergenic | 60.0% |
| GATTTACTCCCATCCGCCGC+AGG | + | chr3_3:76746321-76746340 | None:intergenic | 60.0% | |
| GCTATCGGCAGTCCGATGCT+TGG | + | chr3_3:76746710-76746729 | None:intergenic | 60.0% | |
| ACGACGACGACGATGGTGAG+TGG | - | chr3_3:76746758-76746777 | Msa0473990:intron | 60.0% | |
| GAGCAGCAGCAGCGATGATG+AGG | - | chr3_3:76747083-76747102 | Msa0473990:intron | 60.0% | |
| GGTGAGGAGGACTCAAGAGG+TGG | - | chr3_3:76747249-76747268 | Msa0473990:CDS | 60.0% | |
| GATAAGGATGGCGCGGCGGA+GGG | + | chr3_3:76742659-76742678 | None:intergenic | 65.0% | |
| AGCCTACACAGGCACAGGGC+CGG | - | chr3_3:76744499-76744518 | Msa0473990:intron | 65.0% | |
| TACCGGAGCTGCCTCCACCA+CGG | - | chr3_3:76745378-76745397 | Msa0473990:intron | 65.0% | |
| AGAACAGGACCTGCGGCGGA+TGG | - | chr3_3:76746309-76746328 | Msa0473990:intron | 65.0% | |
| GAACAGGACCTGCGGCGGAT+GGG | - | chr3_3:76746310-76746329 | Msa0473990:intron | 65.0% | |
| GGATAAGGATGGCGCGGCGG+AGG | + | chr3_3:76742660-76742679 | None:intergenic | 70.0% | |
| ! | TGCCGTGGTGGAGGCAGCTC+CGG | + | chr3_3:76745383-76745402 | None:intergenic | 70.0% |
| GGCCGGCCCTGTGCCTGTGT+AGG | + | chr3_3:76744504-76744523 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 76742580 | 76747886 | 76742580 | ID=Msa0473990;Name=Msa0473990 |
| chr3_3 | mRNA | 76742580 | 76747886 | 76742580 | ID=Msa0473990-mRNA-1;Parent=Msa0473990;Name=Msa0473990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|1|1|1|0.75|0.6|5|426|631 |
| chr3_3 | exon | 76742580 | 76742732 | 76742580 | ID=Msa0473990-mRNA-1:exon:20249;Parent=Msa0473990-mRNA-1 |
| chr3_3 | exon | 76742819 | 76744219 | 76742819 | ID=Msa0473990-mRNA-1:exon:20248;Parent=Msa0473990-mRNA-1 |
| chr3_3 | exon | 76744736 | 76745137 | 76744736 | ID=Msa0473990-mRNA-1:exon:20247;Parent=Msa0473990-mRNA-1 |
| chr3_3 | exon | 76747121 | 76747403 | 76747121 | ID=Msa0473990-mRNA-1:exon:20246;Parent=Msa0473990-mRNA-1 |
| chr3_3 | exon | 76747633 | 76747886 | 76747633 | ID=Msa0473990-mRNA-1:exon:20245;Parent=Msa0473990-mRNA-1 |
| chr3_3 | five_prime_UTR | 76747716 | 76747886 | 76747716 | ID=Msa0473990-mRNA-1:five_prime_utr;Parent=Msa0473990-mRNA-1 |
| chr3_3 | CDS | 76747633 | 76747715 | 76747633 | ID=Msa0473990-mRNA-1:cds;Parent=Msa0473990-mRNA-1 |
| chr3_3 | CDS | 76747121 | 76747403 | 76747121 | ID=Msa0473990-mRNA-1:cds;Parent=Msa0473990-mRNA-1 |
| chr3_3 | CDS | 76744736 | 76745137 | 76744736 | ID=Msa0473990-mRNA-1:cds;Parent=Msa0473990-mRNA-1 |
| chr3_3 | CDS | 76743092 | 76744219 | 76743092 | ID=Msa0473990-mRNA-1:cds;Parent=Msa0473990-mRNA-1 |
| chr3_3 | three_prime_UTR | 76742819 | 76743091 | 76742819 | ID=Msa0473990-mRNA-1:three_prime_utr;Parent=Msa0473990-mRNA-1 |
| chr3_3 | three_prime_UTR | 76742580 | 76742732 | 76742580 | ID=Msa0473990-mRNA-1:three_prime_utr;Parent=Msa0473990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
