AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933310 MtrunA17_Chr6g0450151 91.222 900 65 4 1 889 1 897 0.0 1605
Msa0933310 MtrunA17_Chr6g0450071 80.925 692 62 6 1 682 1 632 0.0 1066
Msa0933310 MtrunA17_Chr6g0450071 82.609 46 8 0 258 303 631 676 2.34e-17 87.0
Msa0933310 MtrunA17_Chr1g0181651 30.769 351 181 12 129 449 165 483 7.67e-32 134
Msa0933310 MtrunA17_Chr1g0185901 36.500 200 121 4 268 465 362 557 1.30e-30 130
Msa0933310 MtrunA17_Chr2g0333291 30.743 296 160 9 267 546 257 523 1.87e-28 122
Msa0933310 MtrunA17_Chr4g0018601 33.058 242 152 6 267 500 313 552 1.25e-26 116
Msa0933310 MtrunA17_Chr1g0170751 35.263 190 117 5 264 449 286 473 2.45e-26 116
Msa0933310 MtrunA17_Chr2g0333801 35.484 155 77 3 267 420 6 138 1.77e-21 91.3
Msa0933310 MtrunA17_Chr1g0192031 38.650 163 77 7 268 418 74 225 2.09e-21 98.2
Msa0933310 MtrunA17_Chr7g0272631 45.556 90 48 1 268 356 87 176 4.67e-21 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933310 AT3G27860.2 32.427 478 242 17 268 725 61 477 9.10e-54 199
Msa0933310 AT3G27860.1 32.427 478 242 17 268 725 61 477 9.10e-54 199
Msa0933310 AT3G09670.2 37.569 181 109 3 272 449 201 380 4.89e-27 118
Msa0933310 AT3G09670.1 37.569 181 109 3 272 449 201 380 4.89e-27 118
Msa0933310 AT5G02950.1 30.147 272 171 6 176 439 8 268 3.10e-26 115
Msa0933310 AT5G02950.2 30.147 272 171 6 176 439 8 268 3.10e-26 115
Msa0933310 AT5G27650.1 32.292 192 106 5 268 446 171 351 1.41e-21 101
Msa0933310 AT3G05430.1 46.667 90 47 1 268 356 133 222 2.55e-20 97.4
Msa0933310 AT3G05430.2 37.226 137 72 4 268 400 133 259 2.78e-20 97.4
Msa0933310 AT3G48187.1 28.061 196 109 4 263 449 101 273 1.28e-14 79.0

Find 195 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.131227 6_3:+1803768 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6_3:+1804713 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6_3:+1804257 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6_3:+1802864 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6_3:+1803009 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6_3:-1803724 Msa0933310:CDS
TCTGGTTGCAATTAAGTCTA+AGG 0.249968 6_3:-1803643 Msa0933310:CDS
CTTTCTCATCATCTGGTGTT+TGG 0.275619 6_3:+1803220 None:intergenic
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6_3:+1802795 None:intergenic
CTGAATCGATGGAACCATTT+GGG 0.308664 6_3:-1805216 Msa0933310:CDS
GATTGATCAAGCTCAGATTC+TGG 0.308922 6_3:+1802982 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6_3:-1804314 Msa0933310:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6_3:-1802623 Msa0933310:CDS
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6_3:+1804605 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6_3:+1803213 None:intergenic
GGATAGTGAGGAGGGAGAAA+AGG 0.332631 6_3:-1804666 Msa0933310:CDS
TATTGATATTGCTAGTGTTC+TGG 0.336830 6_3:-1803973 Msa0933310:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.342327 6_3:+1804809 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6_3:+1804056 None:intergenic
AATGATTCCCCGGTGAATAA+TGG 0.346633 6_3:-1805058 Msa0933310:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6_3:+1803186 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6_3:+1802646 None:intergenic
TTCTGCTTTCTTCTACGGTT+CGG 0.373335 6_3:+1803744 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6_3:-1805178 Msa0933310:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6_3:+1803872 None:intergenic
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6_3:-1805185 Msa0933310:CDS
GATAGTGAGGAGGGAGAAAA+GGG 0.387448 6_3:-1804665 Msa0933310:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6_3:+1803123 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6_3:-1803567 Msa0933310:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6_3:-1803723 Msa0933310:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6_3:+1803193 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6_3:-1803661 Msa0933310:CDS
GTGTCTTCTTTGTTGAAAAC+GGG 0.409749 6_3:-1804908 Msa0933310:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6_3:-1804146 Msa0933310:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6_3:+1802858 None:intergenic
AATGAGAAGGATAGTGAGGA+GGG 0.420006 6_3:-1804674 Msa0933310:CDS
ATGATTCCCCGGTGAATAAT+GGG 0.423865 6_3:-1805057 Msa0933310:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6_3:-1804393 Msa0933310:CDS
GGTGTCTTCTTTGTTGAAAA+CGG 0.424689 6_3:-1804909 Msa0933310:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6_3:+1802761 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6_3:+1802790 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6_3:-1802706 Msa0933310:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6_3:-1803879 Msa0933310:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6_3:-1805217 Msa0933310:CDS
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6_3:-1803409 Msa0933310:CDS
GCAGGAGAAGAATGAGCTTA+AGG 0.435652 6_3:-1805149 Msa0933310:CDS
GTGGAAAAGAAAGCTGTGAC+AGG 0.440805 6_3:-1803521 Msa0933310:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6_3:-1804033 Msa0933310:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6_3:-1802865 Msa0933310:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6_3:+1803873 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6_3:-1802952 Msa0933310:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6_3:-1803774 Msa0933310:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.448213 6_3:-1804726 Msa0933310:CDS
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6_3:-1804770 Msa0933310:CDS
TTTGTGAAGGGAAGAGGTGC+TGG 0.451932 6_3:-1803318 Msa0933310:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6_3:+1803811 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6_3:+1803812 None:intergenic
TTTGAAGGAGAATGATTCTC+AGG 0.456489 6_3:-1805086 Msa0933310:CDS
AGGGGCAAATCGCAGCATTC+AGG 0.456509 6_3:-1803501 Msa0933310:CDS
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6_3:+1804214 None:intergenic
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6_3:-1803021 Msa0933310:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6_3:-1803780 Msa0933310:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6_3:-1804394 Msa0933310:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6_3:-1804051 Msa0933310:CDS
TATTGCTAGTGTTCTGGAGC+TGG 0.469362 6_3:-1803967 Msa0933310:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6_3:-1804398 Msa0933310:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6_3:+1805202 None:intergenic
TTTGAAGGCGAATGACTCTC+AGG 0.474527 6_3:-1804960 Msa0933310:CDS
GTCTATTGAGGTACCAATAG+TGG 0.480190 6_3:-1804618 Msa0933310:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6_3:-1803898 Msa0933310:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6_3:-1803686 Msa0933310:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6_3:-1803886 Msa0933310:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6_3:+1803194 None:intergenic
ACTTTGATGGAACATTTGCT+TGG 0.495401 6_3:-1804301 Msa0933310:CDS
ATGTTGATATTGAAGTGAAC+GGG 0.496688 6_3:-1804787 Msa0933310:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6_3:-1804150 Msa0933310:CDS
AGCTGGAAATATTGAAGGCT+CGG 0.497817 6_3:-1803950 Msa0933310:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6_3:-1803027 Msa0933310:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6_3:-1804822 Msa0933310:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6_3:-1804542 Msa0933310:CDS
TCTGGAGCTGGAAATATTGA+AGG 0.502048 6_3:-1803955 Msa0933310:CDS
AGAGACTTTGTGAAGGGAAG+AGG 0.502911 6_3:-1803324 Msa0933310:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6_3:-1804191 Msa0933310:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6_3:+1803168 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6_3:-1802701 Msa0933310:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6_3:-1804330 Msa0933310:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6_3:-1804145 Msa0933310:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6_3:-1803265 Msa0933310:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6_3:-1804510 Msa0933310:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6_3:-1802752 Msa0933310:CDS
TCAGGTTGTGAATGATTCCC+CGG 0.512345 6_3:-1805068 Msa0933310:CDS
GATGAATGAGAAGGATAGTG+AGG 0.516877 6_3:-1804678 Msa0933310:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6_3:-1804114 Msa0933310:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6_3:-1804144 Msa0933310:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6_3:+1803816 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6_3:-1804774 Msa0933310:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6_3:-1803435 Msa0933310:CDS
AGATGTTGATGCAAAAGATA+AGG 0.523242 6_3:-1803691 Msa0933310:CDS
GAATGAGAAGGATAGTGAGG+AGG 0.523714 6_3:-1804675 Msa0933310:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6_3:-1803453 Msa0933310:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6_3:-1802866 Msa0933310:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6_3:-1803408 Msa0933310:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6_3:+1803804 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6_3:-1803543 Msa0933310:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6_3:-1802864 Msa0933310:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6_3:-1803434 Msa0933310:CDS
AATGTTGATATTGAAGTGAA+CGG 0.548378 6_3:-1804788 Msa0933310:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6_3:-1804650 Msa0933310:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6_3:+1804272 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6_3:-1804147 Msa0933310:CDS
GAAGACACCCCATTATTCAC+CGG 0.552105 6_3:+1805049 None:intergenic
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6_3:+1802754 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6_3:+1802660 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6_3:-1803814 Msa0933310:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6_3:-1804187 Msa0933310:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6_3:-1804566 Msa0933310:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6_3:+1802726 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6_3:-1803722 Msa0933310:CDS
CTGGTTGCAATTAAGTCTAA+GGG 0.563006 6_3:-1803642 Msa0933310:CDS
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6_3:-1803131 Msa0933310:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6_3:+1804362 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6_3:-1805167 Msa0933310:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6_3:-1804460 Msa0933310:CDS
TCAATCAGAGACTTTGTGAA+GGG 0.572253 6_3:-1803330 Msa0933310:CDS
TGTGATAAGAAAGTCAAAGA+AGG 0.573083 6_3:-1804860 Msa0933310:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6_3:-1804492 Msa0933310:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6_3:-1803685 Msa0933310:CDS
TTGAAACTCGAGGAGAAAGC+AGG 0.575194 6_3:+1803295 None:intergenic
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6_3:-1803887 Msa0933310:CDS
GGAAAAGAAAGCTGTGACAG+GGG 0.576442 6_3:-1803519 Msa0933310:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6_3:-1804771 Msa0933310:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6_3:+1804276 None:intergenic
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6_3:-1802932 Msa0933310:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6_3:-1802631 Msa0933310:CDS
TGGGAAGATCGAGACTATTG+AGG 0.585945 6_3:-1804522 Msa0933310:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6_3:-1804186 Msa0933310:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6_3:-1804541 Msa0933310:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6_3:-1803828 Msa0933310:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6_3:-1804649 Msa0933310:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6_3:-1805215 Msa0933310:CDS
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6_3:-1803127 Msa0933310:CDS
CGATGTTGAAATGACTGAGA+AGG 0.596335 6_3:-1804579 Msa0933310:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6_3:+1804014 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6_3:+1802946 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6_3:-1804369 Msa0933310:CDS
AAGACACCCCATTATTCACC+GGG 0.600301 6_3:+1805050 None:intergenic
CTGTTATACTTTGAAACTCG+AGG 0.601039 6_3:+1803285 None:intergenic
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6_3:+1804202 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6_3:+1803342 None:intergenic
TTCAATCAGAGACTTTGTGA+AGG 0.604784 6_3:-1803331 Msa0933310:CDS
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6_3:-1804180 Msa0933310:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6_3:+1803888 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6_3:-1804242 Msa0933310:CDS
TGGAAAAGAAAGCTGTGACA+GGG 0.618152 6_3:-1803520 Msa0933310:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6_3:+1804389 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6_3:-1803063 Msa0933310:CDS
TGATATTGAAGTGAACGGGA+AGG 0.622379 6_3:-1804783 Msa0933310:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6_3:+1804380 None:intergenic
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6_3:-1802638 Msa0933310:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6_3:-1802650 Msa0933310:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6_3:-1803459 Msa0933310:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6_3:-1804507 Msa0933310:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6_3:-1804630 Msa0933310:CDS
TGTGGTTGATACTGAATCGA+TGG 0.639717 6_3:-1805227 Msa0933310:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6_3:-1804896 Msa0933310:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6_3:-1803126 Msa0933310:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6_3:+1803345 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6_3:+1802745 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6_3:-1804195 Msa0933310:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6_3:-1803017 Msa0933310:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6_3:-1804615 Msa0933310:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6_3:-1803540 Msa0933310:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6_3:-1803448 Msa0933310:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6_3:-1803827 Msa0933310:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6_3:+1802750 None:intergenic
GTAATGAGAACATCAGCGGT+GGG 0.671348 6_3:-1803458 Msa0933310:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6_3:-1803496 Msa0933310:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6_3:-1803128 Msa0933310:CDS
TGATGTTGAGATGAATGAGA+AGG 0.677474 6_3:-1804687 Msa0933310:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6_3:-1802751 Msa0933310:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6_3:-1804048 Msa0933310:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6_3:-1803193 Msa0933310:CDS
TGATTCTGAAGTGAATAATG+AGG 0.686144 6_3:-1804930 Msa0933310:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6_3:-1804570 Msa0933310:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6_3:-1804403 Msa0933310:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6_3:-1803462 Msa0933310:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6_3:-1802874 Msa0933310:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6_3:-1803721 Msa0933310:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6_3:-1804769 Msa0933310:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6_3:-1805031 Msa0933310:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6_3:-1802605 Msa0933310:CDS
TGATTCCCCGGTGAATAATG+GGG 0.731764 6_3:-1805056 Msa0933310:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6_3:-1803280 Msa0933310:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6_3:-1804406 Msa0933310:CDS
AGACACCCCATTATTCACCG+GGG 0.792139 6_3:+1805051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATTATCCTTAAA+AGG + chr6_3:1803563-1803582 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG - chr6_3:1803565-1803584 Msa0933310:CDS 20.0%
! TAGTTTAGCTGAAAATGTTA+TGG - chr6_3:1802632-1802651 Msa0933310:CDS 25.0%
! AATGTTGATATTGAAGTGAA+CGG - chr6_3:1803029-1803048 Msa0933310:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG - chr6_3:1803569-1803588 Msa0933310:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG - chr6_3:1803919-1803938 Msa0933310:CDS 25.0%
!! TCTTCTGAGATGAATAATGA+CGG - chr6_3:1802786-1802805 Msa0933310:CDS 30.0%
!! TGATTCTGAAGTGAATAATG+AGG - chr6_3:1802887-1802906 Msa0933310:CDS 30.0%
TGTGATAAGAAAGTCAAAGA+AGG - chr6_3:1802957-1802976 Msa0933310:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG - chr6_3:1802980-1802999 Msa0933310:CDS 30.0%
ATGTTGATATTGAAGTGAAC+GGG - chr6_3:1803030-1803049 Msa0933310:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG - chr6_3:1803168-1803187 Msa0933310:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG - chr6_3:1803275-1803294 Msa0933310:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG - chr6_3:1803276-1803295 Msa0933310:CDS 30.0%
TTGACGATTTGATTGATGAA+AGG - chr6_3:1803357-1803376 Msa0933310:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG - chr6_3:1803487-1803506 Msa0933310:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG + chr6_3:1803548-1803567 None:intergenic 30.0%
!! GGATAATTTTGATGATATGG+TGG - chr6_3:1803568-1803587 Msa0933310:CDS 30.0%
AAAAATTCAGGAATCAAGGA+AGG - chr6_3:1803728-1803747 Msa0933310:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG - chr6_3:1803844-1803863 Msa0933310:CDS 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG - chr6_3:1803893-1803912 Msa0933310:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG - chr6_3:1804126-1804145 Msa0933310:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG - chr6_3:1804131-1804150 Msa0933310:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG - chr6_3:1804132-1804151 Msa0933310:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG + chr6_3:1804421-1804440 None:intergenic 30.0%
AGTTTCAAAGTATAACAGTG+AGG - chr6_3:1804537-1804556 Msa0933310:CDS 30.0%
! GCGAATTTTTGACAGAATTT+CGG + chr6_3:1804659-1804678 None:intergenic 30.0%
! AAACTAGTTTCAACCCCAAA+TGG + chr6_3:1802618-1802637 None:intergenic 35.0%
GCTGAAAATGTTATGGTTGA+AGG - chr6_3:1802639-1802658 Msa0933310:CDS 35.0%
!! TGTTTTCAAGACTGAGGTTT+CGG - chr6_3:1802707-1802726 Msa0933310:CDS 35.0%
TTTGAAGGAGAATGATTCTC+AGG - chr6_3:1802731-1802750 Msa0933310:CDS 35.0%
GGTGTCTTCTTTGTTGAAAA+CGG - chr6_3:1802908-1802927 Msa0933310:CDS 35.0%
GTGTCTTCTTTGTTGAAAAC+GGG - chr6_3:1802909-1802928 Msa0933310:CDS 35.0%
TGAAAAAATTGCGACTGTTG+AGG - chr6_3:1803079-1803098 Msa0933310:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG + chr6_3:1803107-1803126 None:intergenic 35.0%
TGATGTTGAGATGAATGAGA+AGG - chr6_3:1803130-1803149 Msa0933310:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG - chr6_3:1803167-1803186 Msa0933310:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG - chr6_3:1803307-1803326 Msa0933310:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG - chr6_3:1803310-1803329 Msa0933310:CDS 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG - chr6_3:1803387-1803406 Msa0933310:CDS 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG - chr6_3:1803388-1803407 Msa0933310:CDS 35.0%
ACTTTGATGGAACATTTGCT+TGG - chr6_3:1803516-1803535 Msa0933310:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG - chr6_3:1803547-1803566 Msa0933310:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG - chr6_3:1803622-1803641 Msa0933310:CDS 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG - chr6_3:1803896-1803915 Msa0933310:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG + chr6_3:1804051-1804070 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG + chr6_3:1804081-1804100 None:intergenic 35.0%
!! AAAAGCATCGCTGACATTAT+GGG - chr6_3:1804094-1804113 Msa0933310:CDS 35.0%
TCTGGTTGCAATTAAGTCTA+AGG - chr6_3:1804174-1804193 Msa0933310:CDS 35.0%
CTGGTTGCAATTAAGTCTAA+GGG - chr6_3:1804175-1804194 Msa0933310:CDS 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG + chr6_3:1804244-1804263 None:intergenic 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG + chr6_3:1804412-1804431 None:intergenic 35.0%
CCGAAAGAACCAAATGAAAA+GGG - chr6_3:1804409-1804428 Msa0933310:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG - chr6_3:1804428-1804447 Msa0933310:CDS 35.0%
TCTCTGATTGAAGTAGTGAA+AGG + chr6_3:1804478-1804497 None:intergenic 35.0%
TTCAATCAGAGACTTTGTGA+AGG - chr6_3:1804486-1804505 Msa0933310:CDS 35.0%
TCAATCAGAGACTTTGTGAA+GGG - chr6_3:1804487-1804506 Msa0933310:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG + chr6_3:1804535-1804554 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG + chr6_3:1804896-1804915 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG + chr6_3:1804980-1804999 None:intergenic 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG + chr6_3:1805030-1805049 None:intergenic 35.0%
TCTACCTTTGTCTTGAAATC+AGG + chr6_3:1805174-1805193 None:intergenic 35.0%
! TGTGGTTGATACTGAATCGA+TGG - chr6_3:1802590-1802609 Msa0933310:CDS 40.0%
ACTGAATCGATGGAACCATT+TGG - chr6_3:1802600-1802619 Msa0933310:CDS 40.0%
CTGAATCGATGGAACCATTT+GGG - chr6_3:1802601-1802620 Msa0933310:CDS 40.0%
TGAATCGATGGAACCATTTG+GGG - chr6_3:1802602-1802621 Msa0933310:CDS 40.0%
!! GAGTAGTGTTTTCAAGACTG+AGG - chr6_3:1802701-1802720 Msa0933310:CDS 40.0%
AATGATTCCCCGGTGAATAA+TGG - chr6_3:1802759-1802778 Msa0933310:CDS 40.0%
ATGATTCCCCGGTGAATAAT+GGG - chr6_3:1802760-1802779 Msa0933310:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG - chr6_3:1802842-1802861 Msa0933310:CDS 40.0%
TTGAAAACGGGAGAAAACGA+TGG - chr6_3:1802921-1802940 Msa0933310:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG + chr6_3:1803011-1803030 None:intergenic 40.0%
TGATATTGAAGTGAACGGGA+AGG - chr6_3:1803034-1803053 Msa0933310:CDS 40.0%
GATGAATGAGAAGGATAGTG+AGG - chr6_3:1803139-1803158 Msa0933310:CDS 40.0%
AATGAGAAGGATAGTGAGGA+GGG - chr6_3:1803143-1803162 Msa0933310:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG - chr6_3:1803187-1803206 Msa0933310:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG - chr6_3:1803199-1803218 Msa0933310:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG - chr6_3:1803202-1803221 Msa0933310:CDS 40.0%
CGATGTTGAAATGACTGAGA+AGG - chr6_3:1803238-1803257 Msa0933310:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG - chr6_3:1803374-1803393 Msa0933310:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG - chr6_3:1803389-1803408 Msa0933310:CDS 40.0%
GAAAGATTAAGAGTCATCCG+TGG - chr6_3:1803411-1803430 Msa0933310:CDS 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG - chr6_3:1803503-1803522 Msa0933310:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG - chr6_3:1803575-1803594 Msa0933310:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG + chr6_3:1803606-1803625 None:intergenic 40.0%
TACAGCTTCTTGAACAGCAT+AGG + chr6_3:1803618-1803637 None:intergenic 40.0%
CAAGAAGCTGTAAATGAGGT+TGG - chr6_3:1803626-1803645 Msa0933310:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG - chr6_3:1803630-1803649 Msa0933310:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG - chr6_3:1803631-1803650 Msa0933310:CDS 40.0%
! CCTGAATTTTTCGCCAACAT+TGG + chr6_3:1803719-1803738 None:intergenic 40.0%
CCAATGTTGGCGAAAAATTC+AGG - chr6_3:1803716-1803735 Msa0933310:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG - chr6_3:1803724-1803743 Msa0933310:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG + chr6_3:1803806-1803825 None:intergenic 40.0%
! TCTGGAGCTGGAAATATTGA+AGG - chr6_3:1803862-1803881 Msa0933310:CDS 40.0%
AGCTGGAAATATTGAAGGCT+CGG - chr6_3:1803867-1803886 Msa0933310:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG - chr6_3:1803930-1803949 Msa0933310:CDS 40.0%
TTGTTATGAGGATCCCAAAC+GGG - chr6_3:1803931-1803950 Msa0933310:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG + chr6_3:1804016-1804035 None:intergenic 40.0%
! ACTTCCTGAACCTGATTTTG+GGG + chr6_3:1804050-1804069 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG + chr6_3:1804052-1804071 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+CGG + chr6_3:1804076-1804095 None:intergenic 40.0%
!! GAAAAGCATCGCTGACATTA+TGG - chr6_3:1804093-1804112 Msa0933310:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG - chr6_3:1804095-1804114 Msa0933310:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG - chr6_3:1804156-1804175 Msa0933310:CDS 40.0%
AAAAAAGACAACGACGATGC+AGG - chr6_3:1804208-1804227 Msa0933310:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG - chr6_3:1804209-1804228 Msa0933310:CDS 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG - chr6_3:1804250-1804269 Msa0933310:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG - chr6_3:1804274-1804293 Msa0933310:CDS 40.0%
TGGAAAAGAAAGCTGTGACA+GGG - chr6_3:1804297-1804316 Msa0933310:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG - chr6_3:1804355-1804374 Msa0933310:CDS 40.0%
GCCGAAAGAACCAAATGAAA+AGG - chr6_3:1804408-1804427 Msa0933310:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG + chr6_3:1804475-1804494 None:intergenic 40.0%
CTTTCTCATCATCTGGTGTT+TGG + chr6_3:1804600-1804619 None:intergenic 40.0%
AGGGTTTCTTTCTCATCATC+TGG + chr6_3:1804607-1804626 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG + chr6_3:1804626-1804645 None:intergenic 40.0%
TTTGACAGAATTTCGGCTGA+AGG + chr6_3:1804652-1804671 None:intergenic 40.0%
TTAGTCCACAAATGTCAAGG+AGG - chr6_3:1804689-1804708 Msa0933310:CDS 40.0%
TAGTCCACAAATGTCAAGGA+GGG - chr6_3:1804690-1804709 Msa0933310:CDS 40.0%
AGAAGTTCATTGTATCGCGA+AGG - chr6_3:1804754-1804773 Msa0933310:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG - chr6_3:1804790-1804809 Msa0933310:CDS 40.0%
GATTGATCAAGCTCAGATTC+TGG + chr6_3:1804838-1804857 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG - chr6_3:1804865-1804884 Msa0933310:CDS 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG + chr6_3:1805025-1805044 None:intergenic 40.0%
GACGATCAACTTAGATGTCT+CGG + chr6_3:1805094-1805113 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG - chr6_3:1805111-1805130 Msa0933310:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG - chr6_3:1805167-1805186 Msa0933310:CDS 40.0%
TTTGGAGGATGTGAACAACA+TGG - chr6_3:1805212-1805231 Msa0933310:CDS 40.0%
TATGGTTGAAGGTTCAGAGC+AGG - chr6_3:1802650-1802669 Msa0933310:CDS 45.0%
GCAGGAGAAGAATGAGCTTA+AGG - chr6_3:1802668-1802687 Msa0933310:CDS 45.0%
!! GACTGAGGTTTCGGTTTTGA+AGG - chr6_3:1802716-1802735 Msa0933310:CDS 45.0%
! TCAGGTTGTGAATGATTCCC+CGG - chr6_3:1802749-1802768 Msa0933310:CDS 45.0%
TGATTCCCCGGTGAATAATG+GGG - chr6_3:1802761-1802780 Msa0933310:CDS 45.0%
AAGACACCCCATTATTCACC+GGG + chr6_3:1802770-1802789 None:intergenic 45.0%
GAAGACACCCCATTATTCAC+CGG + chr6_3:1802771-1802790 None:intergenic 45.0%
TTTGAAGGCGAATGACTCTC+AGG - chr6_3:1802857-1802876 Msa0933310:CDS 45.0%
GACTGTGGAGATTCCAATTG+TGG - chr6_3:1802995-1803014 Msa0933310:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG - chr6_3:1803091-1803110 Msa0933310:CDS 45.0%
GAATGAGAAGGATAGTGAGG+AGG - chr6_3:1803142-1803161 Msa0933310:CDS 45.0%
GATAGTGAGGAGGGAGAAAA+GGG - chr6_3:1803152-1803171 Msa0933310:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG - chr6_3:1803295-1803314 Msa0933310:CDS 45.0%
AGATTAAGAGTCATCCGTGG+TGG - chr6_3:1803414-1803433 Msa0933310:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG - chr6_3:1803448-1803467 Msa0933310:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG + chr6_3:1803544-1803563 None:intergenic 45.0%
GTCTGAATTCGCTCCAATGT+TGG - chr6_3:1803703-1803722 Msa0933310:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG - chr6_3:1803749-1803768 Msa0933310:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG - chr6_3:1803766-1803785 Msa0933310:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG - chr6_3:1803850-1803869 Msa0933310:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG + chr6_3:1803932-1803951 None:intergenic 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG + chr6_3:1804043-1804062 None:intergenic 45.0%
TTGACCCCAAAATCAGGTTC+AGG - chr6_3:1804043-1804062 Msa0933310:CDS 45.0%
! AAGCATCGCTGACATTATGG+GGG - chr6_3:1804096-1804115 Msa0933310:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG - chr6_3:1804277-1804296 Msa0933310:CDS 45.0%
GTGGAAAAGAAAGCTGTGAC+AGG - chr6_3:1804296-1804315 Msa0933310:CDS 45.0%
GGAAAAGAAAGCTGTGACAG+GGG - chr6_3:1804298-1804317 Msa0933310:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG - chr6_3:1804337-1804356 Msa0933310:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG - chr6_3:1804359-1804378 Msa0933310:CDS 45.0%
AGAGACTTTGTGAAGGGAAG+AGG - chr6_3:1804493-1804512 Msa0933310:CDS 45.0%
TTGAAACTCGAGGAGAAAGC+AGG + chr6_3:1804525-1804544 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG - chr6_3:1804552-1804571 Msa0933310:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG + chr6_3:1804627-1804646 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG - chr6_3:1804624-1804643 Msa0933310:CDS 45.0%
GAAGGAACCTTGACTTTCTC+TGG + chr6_3:1804634-1804653 None:intergenic 45.0%
CGCTTAGTCCACAAATGTCA+AGG - chr6_3:1804686-1804705 Msa0933310:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG - chr6_3:1804691-1804710 Msa0933310:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG - chr6_3:1804796-1804815 Msa0933310:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG + chr6_3:1804811-1804830 None:intergenic 45.0%
TGGACCAGCCAAGAAAAGAA+AGG - chr6_3:1804885-1804904 Msa0933310:CDS 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG + chr6_3:1804892-1804911 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG - chr6_3:1804970-1804989 Msa0933310:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG - chr6_3:1805116-1805135 Msa0933310:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG + chr6_3:1805160-1805179 None:intergenic 45.0%
AGACACCCCATTATTCACCG+GGG + chr6_3:1802769-1802788 None:intergenic 50.0%
!! GAGTAGCGTTTTCGAGACTG+AGG - chr6_3:1802827-1802846 Msa0933310:CDS 50.0%
AGTGAACGGGAAGGAGAATG+AGG - chr6_3:1803043-1803062 Msa0933310:CDS 50.0%
AACGGGAAGGAGAATGAGGA+GGG - chr6_3:1803047-1803066 Msa0933310:CDS 50.0%
GGATAGTGAGGAGGGAGAAA+AGG - chr6_3:1803151-1803170 Msa0933310:CDS 50.0%
CTCTCACTTGCCTCCACTAT+TGG + chr6_3:1803215-1803234 None:intergenic 50.0%
AATGACTGAGAAGGAGAGCG+CGG - chr6_3:1803247-1803266 Msa0933310:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG - chr6_3:1803637-1803656 Msa0933310:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG - chr6_3:1803667-1803686 Msa0933310:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG + chr6_3:1803764-1803783 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG - chr6_3:1803784-1803803 Msa0933310:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG + chr6_3:1803947-1803966 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG + chr6_3:1803948-1803967 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG - chr6_3:1803990-1804009 Msa0933310:CDS 50.0%
CTGCCATTGACCCCAAAATC+AGG - chr6_3:1804037-1804056 Msa0933310:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG - chr6_3:1804321-1804340 Msa0933310:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG - chr6_3:1804358-1804377 Msa0933310:CDS 50.0%
AGCGGAGAGGAAAACGATGA+AGG - chr6_3:1804382-1804401 Msa0933310:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG - chr6_3:1804383-1804402 Msa0933310:CDS 50.0%
! TTTGTGAAGGGAAGAGGTGC+TGG - chr6_3:1804499-1804518 Msa0933310:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG - chr6_3:1804800-1804819 Msa0933310:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG - chr6_3:1804973-1804992 Msa0933310:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG - chr6_3:1805179-1805198 Msa0933310:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG - chr6_3:1805186-1805205 Msa0933310:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG - chr6_3:1805194-1805213 Msa0933310:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG - chr6_3:1805197-1805216 Msa0933310:CDS 50.0%
GAACGGGAAGGAGAATGAGG+AGG - chr6_3:1803046-1803065 Msa0933310:CDS 55.0%
ACGGGAAGGAGAATGAGGAG+GGG - chr6_3:1803048-1803067 Msa0933310:CDS 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG - chr6_3:1803325-1803344 Msa0933310:CDS 55.0%
GACGGATCATAAACCCGACC+TGG + chr6_3:1803440-1803459 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG + chr6_3:1803458-1803477 None:intergenic 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG - chr6_3:1803670-1803689 Msa0933310:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG - chr6_3:1803671-1803690 Msa0933310:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG - chr6_3:1803769-1803788 Msa0933310:CDS 55.0%
! GAGGATCCCAAACGGGTTCT+CGG - chr6_3:1803938-1803957 Msa0933310:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG - chr6_3:1803989-1804008 Msa0933310:CDS 55.0%
TCTTCAAACGGCCCTTGGGA+TGG + chr6_3:1804004-1804023 None:intergenic 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG - chr6_3:1804003-1804022 Msa0933310:CDS 55.0%
GTCCTCTTCAAACGGCCCTT+GGG + chr6_3:1804008-1804027 None:intergenic 55.0%
AGTCCTCTTCAAACGGCCCT+TGG + chr6_3:1804009-1804028 None:intergenic 55.0%
CATCGCTGACATTATGGGGG+AGG - chr6_3:1804099-1804118 Msa0933310:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG - chr6_3:1804316-1804335 Msa0933310:CDS 55.0%
GTGCCCCTCCTTGACATTTG+TGG + chr6_3:1804697-1804716 None:intergenic 55.0%
GCTGGTCCAGAATCTTCGCT+AGG + chr6_3:1804874-1804893 None:intergenic 55.0%
GCTCGTGAAACCAAGACCAG+CGG - chr6_3:1804943-1804962 Msa0933310:CDS 55.0%
AACCAAGACCAGCGGCAAGA+AGG - chr6_3:1804951-1804970 Msa0933310:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG - chr6_3:1804952-1804971 Msa0933310:CDS 55.0%
GAGATGGTGTGGCTGGAGTT+AGG + chr6_3:1805059-1805078 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG + chr6_3:1805066-1805085 None:intergenic 55.0%
AGCCACACCATCTCTGTCAC+AGG - chr6_3:1805065-1805084 Msa0933310:CDS 55.0%
GCCACACCATCTCTGTCACA+GGG - chr6_3:1805066-1805085 Msa0933310:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG + chr6_3:1805070-1805089 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG + chr6_3:1805075-1805094 None:intergenic 55.0%
! ACTGAGAAGGAGAGCGCGGA+AGG - chr6_3:1803251-1803270 Msa0933310:CDS 60.0%
AAGAGTCATCCGTGGTGGCC+AGG - chr6_3:1803419-1803438 Msa0933310:CDS 60.0%
TAAACCCGACCTGGCCACCA+CGG + chr6_3:1803431-1803450 None:intergenic 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG - chr6_3:1803672-1803691 Msa0933310:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG - chr6_3:1803673-1803692 Msa0933310:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG + chr6_3:1803680-1803699 None:intergenic 60.0%
GAGAACATCAGCGGTGGGAG+CGG - chr6_3:1804364-1804383 Msa0933310:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG - chr6_3:1804953-1804972 Msa0933310:CDS 60.0%
GTCATCCGTGGTGGCCAGGT+CGG - chr6_3:1803423-1803442 Msa0933310:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG - chr6_3:1803424-1803443 Msa0933310:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG + chr6_3:1804956-1804975 None:intergenic 65.0%
ATCGGTCCCCTTCTTGCCGC+TGG + chr6_3:1804962-1804981 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG - chr6_3:1804369-1804388 Msa0933310:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1802585 1805254 1802585 ID=Msa0933310;Name=Msa0933310
chr6_3 mRNA 1802585 1805254 1802585 ID=Msa0933310-mRNA-1;Parent=Msa0933310;Name=Msa0933310-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|889
chr6_3 exon 1802585 1805254 1802585 ID=Msa0933310-mRNA-1:exon:734;Parent=Msa0933310-mRNA-1
chr6_3 CDS 1802585 1805254 1802585 ID=Msa0933310-mRNA-1:cds;Parent=Msa0933310-mRNA-1
Gene Sequence

>Msa0933310

ATGGGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCAAGACTGAGGTTTCGGTTTTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCCGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTTGTTAAGAGTAGCGTTTTCGAGACTGAGGTTTCGATTTTGAAGGCGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGAGGTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTTGTCGTTTGTGATAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATGTTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAATTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATGTTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAATATTGAAGGCTCGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCGAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCTAAGGGTAGAAAAAAGAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGACAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTGAAGGGAAGAGGTGCTGGCCTGCTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCACCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTGTAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTCGTGA

Protein sequence

>Msa0933310

MGVVDTESMEPFGVETSLAENVMVEGSEQEKNELKEVVKSSVFKTEVSVLKENDSQVVNDSPVNNGVSSEMNNDGAVEVVKSSVFETEVSILKANDSQVVTDSEVNNEVSSLLKTGENDGSVVVCDKKVKEGDEKIQTVEIPIVEISENVDIEVNGKENEEGKKDEKIATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESIDVEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEILKARISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKDVDAKDKEWDASDDEVLVAIKSKGRKKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCDRGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKGRGAGLLSPRVSKYNSEAFQELELSVSLNHQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLVDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSS*