Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969340 | XP_013450735.1 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969340 | sp|Q9LT57|CFM9_ARATH | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.15e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969340 | A0A072U6I9 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0969340 | 0.802160 | 6.401633e-49 | -8.615850e-47 |
| Msa0033950 | Msa0969340 | 0.816177 | 6.325566e-52 | -8.615850e-47 |
| Msa0034030 | Msa0969340 | 0.800014 | 1.758212e-48 | -8.615850e-47 |
| Msa0051170 | Msa0969340 | 0.800113 | 1.678312e-48 | -8.615850e-47 |
| Msa0061080 | Msa0969340 | 0.803406 | 3.538990e-49 | -8.615850e-47 |
| Msa0094470 | Msa0969340 | 0.826082 | 3.297252e-54 | -8.615850e-47 |
| Msa0105620 | Msa0969340 | 0.808272 | 3.359466e-50 | -8.615850e-47 |
| Msa0625720 | Msa0969340 | 0.800979 | 1.117570e-48 | -8.615850e-47 |
| Msa0647500 | Msa0969340 | 0.808483 | 3.029010e-50 | -8.615850e-47 |
| Msa0663390 | Msa0969340 | 0.803396 | 3.556079e-49 | -8.615850e-47 |
| Msa0685140 | Msa0969340 | 0.800010 | 1.761347e-48 | -8.615850e-47 |
| Msa0689260 | Msa0969340 | 0.808755 | 2.650438e-50 | -8.615850e-47 |
| Msa0692830 | Msa0969340 | 0.806803 | 6.889683e-50 | -8.615850e-47 |
| Msa0692950 | Msa0969340 | 0.812024 | 5.220853e-51 | -8.615850e-47 |
| Msa0709500 | Msa0969340 | 0.803756 | 2.994959e-49 | -8.615850e-47 |
| Msa0711780 | Msa0969340 | 0.826502 | 2.618549e-54 | -8.615850e-47 |
| Msa0750430 | Msa0969340 | 0.811032 | 8.572940e-51 | -8.615850e-47 |
| Msa0786270 | Msa0969340 | 0.811992 | 5.304039e-51 | -8.615850e-47 |
| Msa0790850 | Msa0969340 | 0.801915 | 7.189069e-49 | -8.615850e-47 |
| Msa0794670 | Msa0969340 | 0.837167 | 6.099622e-57 | -8.615850e-47 |
| Msa0798440 | Msa0969340 | 0.800691 | 1.279842e-48 | -8.615850e-47 |
| Msa0830540 | Msa0969340 | 0.801530 | 8.622467e-49 | -8.615850e-47 |
| Msa0137550 | Msa0969340 | 0.807641 | 4.577102e-50 | -8.615850e-47 |
| Msa0137840 | Msa0969340 | 0.812002 | 5.277291e-51 | -8.615850e-47 |
| Msa0150820 | Msa0969340 | 0.806623 | 7.520181e-50 | -8.615850e-47 |
| Msa0184040 | Msa0969340 | 0.802102 | 6.580073e-49 | -8.615850e-47 |
| Msa0366890 | Msa0969340 | 0.808786 | 2.610520e-50 | -8.615850e-47 |
| Msa0376300 | Msa0969340 | 0.802199 | 6.284648e-49 | -8.615850e-47 |
| Msa0388700 | Msa0969340 | 0.835082 | 2.064071e-56 | -8.615850e-47 |
| Msa0399340 | Msa0969340 | 0.802370 | 5.793833e-49 | -8.615850e-47 |
| Msa0402650 | Msa0969340 | 0.811913 | 5.519413e-51 | -8.615850e-47 |
| Msa0422400 | Msa0969340 | 0.839045 | 2.003215e-57 | -8.615850e-47 |
| Msa0422840 | Msa0969340 | 0.806386 | 8.435143e-50 | -8.615850e-47 |
| Msa0458060 | Msa0969340 | 0.800836 | 1.195643e-48 | -8.615850e-47 |
| Msa0473990 | Msa0969340 | 0.904411 | 1.262096e-79 | -8.615850e-47 |
| Msa0474010 | Msa0969340 | 0.816350 | 5.787407e-52 | -8.615850e-47 |
| Msa0481530 | Msa0969340 | 0.816958 | 4.227642e-52 | -8.615850e-47 |
| Msa0253200 | Msa0969340 | 0.808856 | 2.521417e-50 | -8.615850e-47 |
| Msa0279220 | Msa0969340 | 0.807799 | 4.235902e-50 | -8.615850e-47 |
| Msa0280610 | Msa0969340 | 0.809611 | 1.737443e-50 | -8.615850e-47 |
| Msa0292030 | Msa0969340 | 0.810433 | 1.155576e-50 | -8.615850e-47 |
| Msa0344540 | Msa0969340 | 0.806534 | 7.852617e-50 | -8.615850e-47 |
| Msa0345390 | Msa0969340 | 0.800542 | 1.372520e-48 | -8.615850e-47 |
| Msa0497490 | Msa0969340 | 0.825980 | 3.487412e-54 | -8.615850e-47 |
| Msa0516260 | Msa0969340 | 0.803653 | 3.145529e-49 | -8.615850e-47 |
| Msa0519740 | Msa0969340 | 0.809925 | 1.486942e-50 | -8.615850e-47 |
| Msa0542090 | Msa0969340 | 0.810894 | 9.186351e-51 | -8.615850e-47 |
| Msa0542130 | Msa0969340 | 0.811444 | 6.979056e-51 | -8.615850e-47 |
| Msa0555450 | Msa0969340 | 0.812177 | 4.833263e-51 | -8.615850e-47 |
| Msa0585560 | Msa0969340 | 0.806044 | 9.959536e-50 | -8.615850e-47 |
| Msa0902760 | Msa0969340 | 0.803358 | 3.620736e-49 | -8.615850e-47 |
| Msa0926850 | Msa0969340 | 0.807227 | 5.602421e-50 | -8.615850e-47 |
| Msa0945440 | Msa0969340 | 0.800642 | 1.309727e-48 | -8.615850e-47 |
| Msa0969340 | Msa0969630 | 0.887044 | 2.015965e-72 | -8.615850e-47 |
| Msa0969340 | Msa0969790 | 0.883415 | 4.573402e-71 | -8.615850e-47 |
| Msa0969340 | Msa0970030 | 0.811955 | 5.403856e-51 | -8.615850e-47 |
| Msa0969340 | Msa0987370 | 0.815498 | 8.962505e-52 | -8.615850e-47 |
| Msa0969340 | Msa1009820 | 0.819656 | 1.035668e-52 | -8.615850e-47 |
| Msa0969340 | Msa1013400 | 0.801037 | 1.087511e-48 | -8.615850e-47 |
| Msa0969340 | Msa1051200 | 0.832837 | 7.525052e-56 | -8.615850e-47 |
| Msa0969340 | Msa1093530 | 0.805879 | 1.078775e-49 | -8.615850e-47 |
| Msa0969340 | Msa1097920 | 0.823530 | 1.317835e-53 | -8.615850e-47 |
| Msa0969340 | Msa1119200 | 0.821295 | 4.357375e-53 | -8.615850e-47 |
| Msa0969340 | Msa1137700 | 0.832729 | 8.005867e-56 | -8.615850e-47 |
| Msa0969340 | Msa1160590 | 0.831152 | 1.962537e-55 | -8.615850e-47 |
| Msa0969340 | Msa1171360 | 0.801927 | 7.146365e-49 | -8.615850e-47 |
| Msa0969340 | Msa1209760 | 0.829393 | 5.279420e-55 | -8.615850e-47 |
| Msa0969340 | Msa1211890 | 0.822665 | 2.097953e-53 | -8.615850e-47 |
| Msa0969340 | Msa1217580 | 0.813279 | 2.773429e-51 | -8.615850e-47 |
| Msa0969340 | Msa1224810 | 0.804603 | 1.995771e-49 | -8.615850e-47 |
| Msa0969340 | Msa1332590 | 0.812698 | 3.720257e-51 | -8.615850e-47 |
| Msa0969340 | Msa1356440 | 0.814662 | 1.374532e-51 | -8.615850e-47 |
| Msa0969340 | Msa1358250 | 0.812823 | 3.492593e-51 | -8.615850e-47 |
| Msa0969340 | Msa1368060 | 0.804919 | 1.714330e-49 | -8.615850e-47 |
| Msa0969340 | Msa1370740 | 0.800098 | 1.690345e-48 | -8.615850e-47 |
| Msa0969340 | Msa1386780 | 0.806108 | 9.654340e-50 | -8.615850e-47 |
| Msa0969340 | Msa1392780 | 0.803171 | 3.959369e-49 | -8.615850e-47 |
| Msa0969340 | Msa1394290 | 0.825241 | 5.218397e-54 | -8.615850e-47 |
| Msa0969340 | Msa1400220 | 0.808324 | 3.274680e-50 | -8.615850e-47 |
| Msa0969340 | Msa1419870 | 0.820260 | 7.533797e-53 | -8.615850e-47 |
| Msa0969340 | Msa1439550 | 0.803472 | 3.430134e-49 | -8.615850e-47 |
| Msa0969340 | Msa1445660 | 0.803652 | 3.147171e-49 | -8.615850e-47 |
| Msa0969340 | Msa1457920 | 0.810402 | 1.173427e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969340 | MtrunA17_Chr6g0449261 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Msa0969340 | MtrunA17_Chr4g0067911 | 49.704 | 169 | 85 | 0 | 113 | 281 | 161 | 329 | 2.04e-45 | 164 |
| Msa0969340 | MtrunA17_Chr1g0171521 | 51.634 | 153 | 72 | 1 | 110 | 260 | 116 | 268 | 2.58e-42 | 154 |
| Msa0969340 | MtrunA17_Chr4g0033621 | 44.970 | 169 | 93 | 0 | 113 | 281 | 134 | 302 | 4.54e-40 | 152 |
| Msa0969340 | MtrunA17_Chr8g0391361 | 48.611 | 144 | 74 | 0 | 113 | 256 | 7 | 150 | 3.74e-37 | 136 |
| Msa0969340 | MtrunA17_Chr6g0484411 | 32.701 | 211 | 128 | 5 | 77 | 284 | 557 | 756 | 4.34e-23 | 104 |
| Msa0969340 | MtrunA17_Chr1g0187011 | 31.925 | 213 | 127 | 6 | 77 | 284 | 566 | 765 | 5.46e-23 | 104 |
| Msa0969340 | MtrunA17_Chr6g0451621 | 35.593 | 177 | 106 | 3 | 114 | 284 | 518 | 692 | 1.54e-21 | 99.8 |
| Msa0969340 | MtrunA17_Chr2g0330811 | 37.500 | 128 | 72 | 2 | 148 | 272 | 593 | 715 | 9.34e-18 | 87.4 |
| Msa0969340 | MtrunA17_Chr4g0071101 | 28.293 | 205 | 140 | 3 | 89 | 290 | 531 | 731 | 3.54e-17 | 85.5 |
| Msa0969340 | MtrunA17_Chr8g0391141 | 30.851 | 188 | 120 | 4 | 74 | 258 | 412 | 592 | 1.28e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969340 | AT3G27550.2 | 71.756 | 393 | 96 | 6 | 1 | 385 | 1 | 386 | 4.84e-164 | 481 |
| Msa0969340 | AT3G27550.3 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.23e-163 | 476 |
| Msa0969340 | AT3G27550.1 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.23e-163 | 476 |
| Msa0969340 | AT3G25440.2 | 45.918 | 196 | 104 | 1 | 96 | 289 | 57 | 252 | 2.68e-47 | 171 |
| Msa0969340 | AT3G25440.1 | 45.918 | 196 | 104 | 1 | 96 | 289 | 121 | 316 | 1.54e-46 | 171 |
| Msa0969340 | AT2G28480.1 | 46.857 | 175 | 93 | 0 | 107 | 281 | 119 | 293 | 7.25e-44 | 161 |
| Msa0969340 | AT3G25440.4 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969340 | AT3G25440.3 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969340 | AT3G25440.5 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969340 | AT4G13070.1 | 45.128 | 195 | 97 | 3 | 78 | 268 | 111 | 299 | 1.87e-40 | 151 |
| Msa0969340 | AT3G18390.1 | 35.106 | 188 | 109 | 4 | 100 | 284 | 611 | 788 | 1.63e-25 | 112 |
| Msa0969340 | AT3G23070.1 | 36.000 | 175 | 99 | 3 | 90 | 261 | 586 | 750 | 6.74e-23 | 104 |
| Msa0969340 | AT4G14510.1 | 32.812 | 192 | 116 | 3 | 90 | 278 | 613 | 794 | 2.35e-22 | 102 |
| Msa0969340 | AT3G01370.1 | 37.143 | 140 | 85 | 1 | 148 | 284 | 575 | 714 | 3.76e-22 | 102 |
| Msa0969340 | AT4G29750.1 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 4.52e-21 | 98.6 |
| Msa0969340 | AT4G29750.2 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 6.65e-21 | 98.2 |
| Msa0969340 | AT5G16180.1 | 31.795 | 195 | 118 | 5 | 111 | 290 | 523 | 717 | 1.45e-16 | 84.0 |
Find 199 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGGTGATCTCTTCTTA+TGG | 0.210452 | 6_4:+833868 | None:intergenic |
| GTTGGTGTTCGTGGAGTATT+TGG | 0.242614 | 6_4:-835719 | Msa0969340:CDS |
| AAGAGTCTGGTAAAACATTA+AGG | 0.251609 | 6_4:-838237 | Msa0969340:CDS |
| TTGTTCAGATGTGTACTTTA+GGG | 0.259867 | 6_4:-833674 | Msa0969340:three_prime_UTR |
| TTCAGCTTCATATTCTTTAT+CGG | 0.273368 | 6_4:+834661 | None:intergenic |
| TGCAATGTGGGAGTCGGATT+TGG | 0.290486 | 6_4:-834180 | Msa0969340:CDS |
| CATTTCTTTAATTCTTTCCT+TGG | 0.291251 | 6_4:+835625 | None:intergenic |
| TCCCTGCCTCTCAAACTCTT+TGG | 0.295275 | 6_4:+834041 | None:intergenic |
| TTTGTTCAGATGTGTACTTT+AGG | 0.300577 | 6_4:-833675 | Msa0969340:three_prime_UTR |
| CTCTTTGTAAGGGTATTAAT+AGG | 0.314891 | 6_4:+835494 | None:intergenic |
| CAAGCTTCATCAGCTTCCTT+TGG | 0.315883 | 6_4:+833852 | None:intergenic |
| AGTTTGGAAGACTTAGATAT+TGG | 0.318025 | 6_4:-834619 | Msa0969340:CDS |
| ATTGGCAATGGTCAAGTTAA+TGG | 0.324195 | 6_4:-834293 | Msa0969340:CDS |
| AGCTAAATTTAGGACGAATA+TGG | 0.330496 | 6_4:-834249 | Msa0969340:CDS |
| AGTCCTCCTCACCTTCTGAT+TGG | 0.334499 | 6_4:+833952 | None:intergenic |
| TTCAGAAATGTTGTGCCTTT+AGG | 0.335105 | 6_4:-838427 | Msa0969340:intron |
| ATTTCTTTAATTCTTTCCTT+GGG | 0.340101 | 6_4:+835626 | None:intergenic |
| TTCAAGAGCTTGCTCAAATC+TGG | 0.345605 | 6_4:+834940 | None:intergenic |
| ATCTTACCTTCCTCTTTGTA+AGG | 0.348042 | 6_4:+835483 | None:intergenic |
| CTTTACACCCGAACAGCTTC+AGG | 0.349585 | 6_4:-835783 | Msa0969340:CDS |
| CCTTTAGCGGTTTGGAAGAC+TGG | 0.351247 | 6_4:-833980 | Msa0969340:CDS |
| CTCAAATCTGGCCTTGAATA+GGG | 0.356118 | 6_4:+834952 | None:intergenic |
| TGCTCTATTCCTTGTCCTAA+AGG | 0.362024 | 6_4:+838412 | None:intergenic |
| TTTATACGCCTGAAGCTGTT+CGG | 0.362329 | 6_4:+835775 | None:intergenic |
| GCTCAAATCTGGCCTTGAAT+AGG | 0.363277 | 6_4:+834951 | None:intergenic |
| CATGGATGCCTTTAGCGGTT+TGG | 0.367845 | 6_4:-833988 | Msa0969340:CDS |
| AAGTTGAAAGAGAGATGAAA+TGG | 0.367950 | 6_4:+838692 | None:intergenic |
| TTATACGCCTGAAGCTGTTC+GGG | 0.370216 | 6_4:+835776 | None:intergenic |
| AACTTCAATCCAATCTCTTC+AGG | 0.372514 | 6_4:-838674 | Msa0969340:intron |
| AGAAAGTGGAAGCCACTCTT+TGG | 0.372764 | 6_4:+834831 | None:intergenic |
| GATTCCTCCAAACCATCATT+AGG | 0.373992 | 6_4:+834740 | None:intergenic |
| ACTCATTCTTCAAACTGAAA+AGG | 0.379691 | 6_4:+838786 | None:intergenic |
| GTCCTCCTCACCTTCTGATT+GGG | 0.380053 | 6_4:+833953 | None:intergenic |
| GCCATTGCAGTTGGATCCTC+AGG | 0.380404 | 6_4:+834860 | None:intergenic |
| ACTTCCATCTTTCTTGTCAA+TGG | 0.383828 | 6_4:+834802 | None:intergenic |
| GCCAAAGAAAAGGAAGAGTT+TGG | 0.388346 | 6_4:-834635 | Msa0969340:CDS |
| GGAATCAGATCCTGCTGAAC+AGG | 0.388918 | 6_4:-834723 | Msa0969340:CDS |
| TGTGTACACCGAAGTTATTT+AGG | 0.399084 | 6_4:-833624 | Msa0969340:three_prime_UTR |
| GGAGAAGAGAAGGGTTTCAA+GGG | 0.401105 | 6_4:+838895 | None:intergenic |
| AAGGGTTTACCTGAAGAGAT+TGG | 0.402994 | 6_4:+838665 | None:intergenic |
| CTCATTCTTCAAACTGAAAA+GGG | 0.414892 | 6_4:+838787 | None:intergenic |
| GACACGGTGAAGCTAAATTT+AGG | 0.418116 | 6_4:-834259 | Msa0969340:CDS |
| CTATCGGCAGTCCGATGCTT+GGG | 0.419822 | 6_4:+834494 | None:intergenic |
| AATAGAACCTAATGATGGTT+TGG | 0.420274 | 6_4:-834747 | Msa0969340:CDS |
| AATACTCCACGAACACCAAC+TGG | 0.421248 | 6_4:+835722 | None:intergenic |
| TATGTTCCAGTTGGTGTTCG+TGG | 0.423683 | 6_4:-835728 | Msa0969340:CDS |
| GAGAGATGAAATGGGTTTGA+GGG | 0.425769 | 6_4:+838701 | None:intergenic |
| AGAGAGATGAAATGGGTTTG+AGG | 0.426459 | 6_4:+838700 | None:intergenic |
| CACCAAAGAGTTTGAGAGGC+AGG | 0.427775 | 6_4:-834043 | Msa0969340:CDS |
| AACCAATCAACAATTTCTTC+AGG | 0.430070 | 6_4:+833583 | None:intergenic |
| AGTTTGAGAGGCAGGGAAGC+AGG | 0.434357 | 6_4:-834035 | Msa0969340:CDS |
| GCTAAATTTAGGACGAATAT+GGG | 0.439861 | 6_4:-834248 | Msa0969340:CDS |
| AACAATAAAAGCTATCGTTA+TGG | 0.440253 | 6_4:+838359 | None:intergenic |
| TGCCGTGGTGGAGGCAGCTC+CGG | 0.440666 | 6_4:+835818 | None:intergenic |
| TTTGAATGGATCCTTGTGTC+GGG | 0.442400 | 6_4:-838317 | Msa0969340:CDS |
| AGAAGAATGCAGAAAGAGTC+TGG | 0.444428 | 6_4:-838250 | Msa0969340:CDS |
| CAAGGAAAGAATTAAAGAAA+TGG | 0.444685 | 6_4:-835624 | Msa0969340:CDS |
| AAATGGCGGCAGTGAGGATA+AGG | 0.446224 | 6_4:+838814 | None:intergenic |
| AGGATAAATAATACAAGTAT+TGG | 0.447491 | 6_4:-834311 | Msa0969340:CDS |
| GAGGTAGGTTCAAGGAAAGT+AGG | 0.447947 | 6_4:-834346 | Msa0969340:CDS |
| CAAAGGAAGCTGATGAAGCT+TGG | 0.453830 | 6_4:-833851 | Msa0969340:CDS |
| AGGTTAGAGGCTCAAGAGTT+CGG | 0.454485 | 6_4:-834529 | Msa0969340:CDS |
| GGATAAGGATGGCGCGGCGG+AGG | 0.456392 | 6_4:+838829 | None:intergenic |
| TATTGGAACAGAGAAGAGTA+TGG | 0.456496 | 6_4:-834602 | Msa0969340:CDS |
| AGGAGAAGAGAAGGGTTTCA+AGG | 0.461026 | 6_4:+838894 | None:intergenic |
| GCGGCGGAGGGAGTTGATTA+CGG | 0.461896 | 6_4:+838842 | None:intergenic |
| GACTATGATGGTGAGGTTAG+AGG | 0.468968 | 6_4:-834542 | Msa0969340:CDS |
| AAACTGAAAAGGGAGGAAAA+TGG | 0.471915 | 6_4:+838797 | None:intergenic |
| AGTTGAAAGAGAGATGAAAT+GGG | 0.472804 | 6_4:+838693 | None:intergenic |
| TGCCTGAAGAAATTGTTGAT+TGG | 0.477215 | 6_4:-833585 | Msa0969340:three_prime_UTR |
| TCTGGATCATGCCGTGGTGG+AGG | 0.477830 | 6_4:+835809 | None:intergenic |
| AAAGGAAGCTGATGAAGCTT+GGG | 0.481393 | 6_4:-833850 | Msa0969340:CDS |
| TTATATACAGGCCCTATTCA+AGG | 0.481490 | 6_4:-834963 | Msa0969340:intron |
| GGTGTTCGTGGAGTATTTGG+AGG | 0.482666 | 6_4:-835716 | Msa0969340:CDS |
| TGGATGCTGGCCATTGCAGT+TGG | 0.483571 | 6_4:+834851 | None:intergenic |
| ATTCTGGTATAGCATTTACT+TGG | 0.484390 | 6_4:+833815 | None:intergenic |
| CCAGTCTTCCAAACCGCTAA+AGG | 0.489203 | 6_4:+833980 | None:intergenic |
| AAACATAAAGAAAATAGAAC+AGG | 0.489664 | 6_4:-834906 | Msa0969340:CDS |
| AGAGTCTGGTAAAACATTAA+GGG | 0.491117 | 6_4:-838236 | Msa0969340:CDS |
| GGAAGCCACTCTTTGGATGC+TGG | 0.495190 | 6_4:+834838 | None:intergenic |
| AGGTAGGTTCAAGGAAAGTA+GGG | 0.497194 | 6_4:-834345 | Msa0969340:CDS |
| AGCTGAAGAGGCCAAAGAAA+AGG | 0.499259 | 6_4:-834645 | Msa0969340:CDS |
| CCCTACAAGTCAAAATAGTA+AGG | 0.500263 | 6_4:-833907 | Msa0969340:CDS |
| GGACTCAAGAGGTGGTGATA+AGG | 0.500654 | 6_4:-833934 | Msa0969340:CDS |
| AATGCCATTGACAAGAAAGA+TGG | 0.502487 | 6_4:-834806 | Msa0969340:CDS |
| AGAACAGGACCTGCGGCGGA+TGG | 0.509673 | 6_4:-834891 | Msa0969340:CDS |
| TCAGAAACCACACACGACTC+TGG | 0.510038 | 6_4:-833721 | Msa0969340:three_prime_UTR |
| GATCCATTCAAAAGATTCAA+CGG | 0.510157 | 6_4:+838328 | None:intergenic |
| TGTTCGGGTGTAAAGAGCTC+TGG | 0.511414 | 6_4:+835791 | None:intergenic |
| GATAAGGATGGCGCGGCGGA+GGG | 0.512390 | 6_4:+838830 | None:intergenic |
| ACTATCGGCAGTCCGATGCT+TGG | 0.513686 | 6_4:+834493 | None:intergenic |
| GAGCAGCAGCAGCGATGATG+AGG | 0.514342 | 6_4:-834108 | Msa0969340:CDS |
| TCTAGCTCTTCCTGTTCAGC+AGG | 0.518776 | 6_4:+834713 | None:intergenic |
| TTGTCTCCACGGTTAACATA+AGG | 0.519546 | 6_4:+834779 | None:intergenic |
| GACGATGGTGAGTGGCATCA+TGG | 0.520485 | 6_4:-834425 | Msa0969340:CDS |
| GTGTCCATGGATGCCTTTAG+CGG | 0.520678 | 6_4:-833993 | Msa0969340:CDS |
| AATGTGGGAGTCGGATTTGG+AGG | 0.524703 | 6_4:-834177 | Msa0969340:CDS |
| CTGAACAGGAAGAGCTAGAT+CGG | 0.526672 | 6_4:-834709 | Msa0969340:CDS |
| TGCAAAATATGCATCTCCAT+TGG | 0.528015 | 6_4:-835688 | Msa0969340:CDS |
| GCTTAAGAAATATGAGCTAC+CGG | 0.528659 | 6_4:-835837 | Msa0969340:CDS |
| TGAAGCTAGAGGTAGGTTCA+AGG | 0.529177 | 6_4:-834354 | Msa0969340:CDS |
| TGCGTCGGAAGGAGAAGAGA+AGG | 0.530026 | 6_4:+838885 | None:intergenic |
| GTCAATGGCATTGAAGAAAG+TGG | 0.531512 | 6_4:+834817 | None:intergenic |
| CCGCACTAAATCCGTGTCCA+TGG | 0.531564 | 6_4:-834006 | Msa0969340:CDS |
| AACAAGAATTATGTTCCAGT+TGG | 0.532863 | 6_4:-835737 | Msa0969340:CDS |
| TCTTACCTTCCTCTTTGTAA+GGG | 0.535231 | 6_4:+835484 | None:intergenic |
| GAACAGGACCTGCGGCGGAT+GGG | 0.538425 | 6_4:-834890 | Msa0969340:CDS |
| GATTTACTCCCATCCGCCGC+AGG | 0.541197 | 6_4:+834882 | None:intergenic |
| TTACTGACGGCTTGTCTCCA+CGG | 0.541347 | 6_4:+834768 | None:intergenic |
| AGAACCTAATGATGGTTTGG+AGG | 0.543260 | 6_4:-834744 | Msa0969340:CDS |
| CGAAGTTGAAAATGCAATGT+GGG | 0.549326 | 6_4:-834192 | Msa0969340:CDS |
| CAAACCGCTAAAGGCATCCA+TGG | 0.549768 | 6_4:+833989 | None:intergenic |
| ACCGAAGTTATTTAGGTGGG+TGG | 0.551390 | 6_4:-833617 | Msa0969340:three_prime_UTR |
| GAGAAGAGAAGGGTTTCAAG+GGG | 0.552279 | 6_4:+838896 | None:intergenic |
| TGGTTGAAACAAAATCATCA+AGG | 0.553592 | 6_4:-833565 | Msa0969340:three_prime_UTR |
| CCCACCCACCTAAATAACTT+CGG | 0.554815 | 6_4:+833616 | None:intergenic |
| ATTCTCTTCATCGTCACTAT+CGG | 0.555645 | 6_4:+834478 | None:intergenic |
| TGAAGCTTGGGACAGTGACT+AGG | 0.557695 | 6_4:-833838 | Msa0969340:exon |
| GCTGTCAACATCACTGTCAT+CGG | 0.559876 | 6_4:+834394 | None:intergenic |
| AATGTTGTGCCTTTAGGACA+AGG | 0.561411 | 6_4:-838421 | Msa0969340:CDS |
| TAAAGAATATGAAGCTGAAG+AGG | 0.562743 | 6_4:-834657 | Msa0969340:CDS |
| TGGAACAGAGAAGAGTATGG+TGG | 0.564267 | 6_4:-834599 | Msa0969340:CDS |
| TTTCTTTAATTCTTTCCTTG+GGG | 0.565613 | 6_4:+835627 | None:intergenic |
| AATGCACCAAAGAGTTTGAG+AGG | 0.565918 | 6_4:-834047 | Msa0969340:CDS |
| TCATTAGGTTCTATTACTGA+CGG | 0.569181 | 6_4:+834755 | None:intergenic |
| TCGGTTCATCGCTGATATAG+AGG | 0.570941 | 6_4:-834690 | Msa0969340:CDS |
| TGAAAATGCAATGTGGGAGT+CGG | 0.574987 | 6_4:-834186 | Msa0969340:CDS |
| CGGGGAATGTCAACGATGAG+AGG | 0.581892 | 6_4:-838298 | Msa0969340:CDS |
| TCAGTAATAGAACCTAATGA+TGG | 0.582255 | 6_4:-834752 | Msa0969340:CDS |
| TGTTTGACAATCAGAACGGA+TGG | 0.583072 | 6_4:-833771 | Msa0969340:three_prime_UTR |
| AGCTTCATATTCTTTATCGG+CGG | 0.584618 | 6_4:+834664 | None:intergenic |
| AACTTATGACTGACGAGGAG+CGG | 0.586837 | 6_4:-838183 | Msa0969340:CDS |
| ACCAAAGAGTTTGAGAGGCA+GGG | 0.588416 | 6_4:-834042 | Msa0969340:CDS |
| AATAATACAAGTATTGGCAA+TGG | 0.589479 | 6_4:-834305 | Msa0969340:CDS |
| TCTAGAAATGATGACTATGA+TGG | 0.589821 | 6_4:-834554 | Msa0969340:CDS |
| TCCTGAGGATCCAACTGCAA+TGG | 0.592648 | 6_4:-834861 | Msa0969340:CDS |
| AGGAAAGAGTATGCGAAGCA+AGG | 0.594524 | 6_4:-838278 | Msa0969340:CDS |
| TACACCGAAGTTATTTAGGT+GGG | 0.595132 | 6_4:-833620 | Msa0969340:three_prime_UTR |
| CCGAAGTTATTTAGGTGGGT+GGG | 0.595385 | 6_4:-833616 | Msa0969340:three_prime_UTR |
| GACTGGATGTCCCAATCAGA+AGG | 0.597113 | 6_4:-833963 | Msa0969340:CDS |
| GGTTGAAACAAAATCATCAA+GGG | 0.600112 | 6_4:-833564 | Msa0969340:three_prime_UTR |
| CGTTGACATTCCCCGACACA+AGG | 0.600701 | 6_4:+838306 | None:intergenic |
| AGCAGCAGCAGCGATGATGA+GGG | 0.601546 | 6_4:-834107 | Msa0969340:CDS |
| TGCTTGCAAGACTGAGTGGT+GGG | 0.602807 | 6_4:-835595 | Msa0969340:CDS |
| TAATACCCTTACAAAGAGGA+AGG | 0.604277 | 6_4:-835489 | Msa0969340:intron |
| AGAATATACATCCCAAGCAT+CGG | 0.605468 | 6_4:-834505 | Msa0969340:CDS |
| AAAACTATTACGATATTGAG+CGG | 0.607700 | 6_4:+834070 | None:intergenic |
| CAGTCTCATGAAACTTCCAA+TGG | 0.613298 | 6_4:+835672 | None:intergenic |
| GTAGGTTCAAGGAAAGTAGG+GGG | 0.613514 | 6_4:-834343 | Msa0969340:CDS |
| TTGAATGGATCCTTGTGTCG+GGG | 0.613828 | 6_4:-838316 | Msa0969340:CDS |
| GCGGAGCAAAGTGCGTCGGA+AGG | 0.617172 | 6_4:+838874 | None:intergenic |
| AATGACTCGGTACATTTGAG+AGG | 0.617243 | 6_4:-834152 | Msa0969340:CDS |
| AGCTCTGGATCATGCCGTGG+TGG | 0.620706 | 6_4:+835806 | None:intergenic |
| ACTTTGTTTGACAATCAGAA+CGG | 0.621423 | 6_4:-833775 | Msa0969340:three_prime_UTR |
| GATGGCTCTGATGAAGCTAG+AGG | 0.623735 | 6_4:-834365 | Msa0969340:CDS |
| GTTGGCGGTAATTTCTACCA+CGG | 0.628009 | 6_4:+835531 | None:intergenic |
| GATGTCCCAATCAGAAGGTG+AGG | 0.630183 | 6_4:-833958 | Msa0969340:CDS |
| GTCCCAATCAGAAGGTGAGG+AGG | 0.630743 | 6_4:-833955 | Msa0969340:CDS |
| CCATAAGAAGAGATCACCAA+AGG | 0.633775 | 6_4:-833868 | Msa0969340:CDS |
| TTGTTGTGACAACTTCCCCA+AGG | 0.637735 | 6_4:-835642 | Msa0969340:CDS |
| CAGTGAGGATAAGGATGGCG+CGG | 0.638132 | 6_4:+838823 | None:intergenic |
| GTACACCGAAGTTATTTAGG+TGG | 0.638591 | 6_4:-833621 | Msa0969340:three_prime_UTR |
| GCGTCGGAAGGAGAAGAGAA+GGG | 0.639599 | 6_4:+838886 | None:intergenic |
| GAAGGTGAGGAGGACTCAAG+AGG | 0.641359 | 6_4:-833945 | Msa0969340:CDS |
| AATGGCCAGCATCCAAAGAG+TGG | 0.641691 | 6_4:-834843 | Msa0969340:CDS |
| TCAATGCTTGCAAGACTGAG+TGG | 0.642842 | 6_4:-835599 | Msa0969340:CDS |
| GGTAGGTTCAAGGAAAGTAG+GGG | 0.644041 | 6_4:-834344 | Msa0969340:CDS |
| TACAAGTCAAAATAGTAAGG+TGG | 0.645026 | 6_4:-833904 | Msa0969340:CDS |
| ATTCTTCAAACTGAAAAGGG+AGG | 0.647075 | 6_4:+838790 | None:intergenic |
| TACACTTCCAGAGTCGTGTG+TGG | 0.647458 | 6_4:+833714 | None:intergenic |
| AATGGTGGTCAGAGCAGACA+CGG | 0.648459 | 6_4:-834275 | Msa0969340:CDS |
| ACGACGACGACGATGGTGAG+TGG | 0.649974 | 6_4:-834433 | Msa0969340:CDS |
| GGTGAGGAGGACTCAAGAGG+TGG | 0.651623 | 6_4:-833942 | Msa0969340:CDS |
| AAAACAATCATCATGTTCCG+TGG | 0.652160 | 6_4:-835548 | Msa0969340:CDS |
| GGCAATGGTCAAGTTAATGG+TGG | 0.652521 | 6_4:-834290 | Msa0969340:CDS |
| CTATTAATACCCTTACAAAG+AGG | 0.653915 | 6_4:-835493 | Msa0969340:CDS |
| GCTCTGATGAAGCTAGAGGT+AGG | 0.654685 | 6_4:-834361 | Msa0969340:CDS |
| AGTGGCGGAGCAAAGTGCGT+CGG | 0.656485 | 6_4:+838870 | None:intergenic |
| AAATAGAACAGGACCTGCGG+CGG | 0.657187 | 6_4:-834895 | Msa0969340:CDS |
| GGCGGCAGTGAGGATAAGGA+TGG | 0.660305 | 6_4:+838818 | None:intergenic |
| TTGATTACGGAGGAGAGTGG+CGG | 0.661451 | 6_4:+838855 | None:intergenic |
| AGAAAATAGAACAGGACCTG+CGG | 0.664826 | 6_4:-834898 | Msa0969340:CDS |
| TACCGGAGCTGCCTCCACCA+CGG | 0.667902 | 6_4:-835820 | Msa0969340:CDS |
| GAGTTGATTACGGAGGAGAG+TGG | 0.668179 | 6_4:+838852 | None:intergenic |
| GCTAAAGGCATCCATGGACA+CGG | 0.670630 | 6_4:+833995 | None:intergenic |
| GGAAGTCCTTATGTTAACCG+TGG | 0.676008 | 6_4:-834785 | Msa0969340:CDS |
| GCGAAGTTGAAAATGCAATG+TGG | 0.678148 | 6_4:-834193 | Msa0969340:CDS |
| CCATGGACACGGATTTAGTG+CGG | 0.681554 | 6_4:+834006 | None:intergenic |
| AAAGAGTATGCGAAGCAAGG+TGG | 0.683453 | 6_4:-838275 | Msa0969340:CDS |
| AAATGATGACTATGATGGTG+AGG | 0.683700 | 6_4:-834549 | Msa0969340:CDS |
| GGAGGAAAATGGCGGCAGTG+AGG | 0.687637 | 6_4:+838808 | None:intergenic |
| TGAGGATAAGGATGGCGCGG+CGG | 0.691932 | 6_4:+838826 | None:intergenic |
| GGATTTGGAGGACAATGACT+CGG | 0.695707 | 6_4:-834165 | Msa0969340:CDS |
| AAGAGCTCTGGATCATGCCG+TGG | 0.696702 | 6_4:+835803 | None:intergenic |
| CTGAAAAGGGAGGAAAATGG+CGG | 0.701002 | 6_4:+838800 | None:intergenic |
| ATGCTTGCAAGACTGAGTGG+TGG | 0.703573 | 6_4:-835596 | Msa0969340:CDS |
| GCGGAGGGAGTTGATTACGG+AGG | 0.725893 | 6_4:+838845 | None:intergenic |
| GCGGATGGGAGTAAATCCTG+AGG | 0.727364 | 6_4:-834876 | Msa0969340:CDS |
| GAAGAAACTTATGACTGACG+AGG | 0.727589 | 6_4:-838188 | Msa0969340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAATATAAACTTTA+AGG | + | chr6_4:833881-833900 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTAAGAT+TGG | - | chr6_4:833933-833952 | Msa0969340:CDS | 10.0% |
| !!! | ATATTTTTGATTTAATTAGT+TGG | + | chr6_4:835304-835323 | None:intergenic | 10.0% |
| !!! | AATTATCATTTTCATTACTT+TGG | + | chr6_4:834667-834686 | None:intergenic | 15.0% |
| !! | ATAAACAAAAAATCTACAAA+AGG | + | chr6_4:834909-834928 | None:intergenic | 15.0% |
| !!! | TCTACTACAATTTTTATTTT+TGG | + | chr6_4:835362-835381 | None:intergenic | 15.0% |
| !!! | TCTCAATTAAAATTGTTTTA+TGG | - | chr6_4:835795-835814 | Msa0969340:CDS | 15.0% |
| !!! | AAAATTGTTTTATGGTTTAA+AGG | - | chr6_4:835803-835822 | Msa0969340:CDS | 15.0% |
| !!! | TTAATAGGTATCAAATTTTT+GGG | + | chr6_4:836953-836972 | None:intergenic | 15.0% |
| !!! | ATTAATAGGTATCAAATTTT+TGG | + | chr6_4:836954-836973 | None:intergenic | 15.0% |
| !! | GTATTATATTAGTAATTTGA+AGG | + | chr6_4:837259-837278 | None:intergenic | 15.0% |
| !! | GAATACAAAATTGAAGTAAA+CGG | + | chr6_4:833822-833841 | None:intergenic | 20.0% |
| !!! | ATTGGTTTACATTTGTTAAT+TGG | - | chr6_4:833951-833970 | Msa0969340:CDS | 20.0% |
| !! | TTTGTTAATTGGTATTTCAT+AGG | - | chr6_4:833962-833981 | Msa0969340:CDS | 20.0% |
| !! | GATTTATGTATTCGAATTTA+TGG | - | chr6_4:834423-834442 | Msa0969340:CDS | 20.0% |
| !! | TAGACATTAGAAAGTTTAAT+TGG | - | chr6_4:834601-834620 | Msa0969340:CDS | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr6_4:835026-835045 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr6_4:835108-835127 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr6_4:835109-835128 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr6_4:835110-835129 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr6_4:835151-835170 | Msa0969340:intron | 20.0% |
| !! | ATTGTAAATGTTGTATAGAT+AGG | - | chr6_4:835976-835995 | Msa0969340:intron | 20.0% |
| !! | AAAAACAGTAGTATTGTTTA+AGG | + | chr6_4:836036-836055 | None:intergenic | 20.0% |
| !! | ACAATTACTTAAAACTGATA+AGG | + | chr6_4:836334-836353 | None:intergenic | 20.0% |
| !! | ATTTCTTTAATTCTTTCCTT+GGG | + | chr6_4:836836-836855 | None:intergenic | 20.0% |
| !!! | TAACTGATAATGAACAATAT+TGG | + | chr6_4:837036-837055 | None:intergenic | 20.0% |
| !! | AAACATAAAGAAAATAGAAC+AGG | - | chr6_4:837553-837572 | Msa0969340:intron | 20.0% |
| !! | AGGATAAATAATACAAGTAT+TGG | - | chr6_4:838148-838167 | Msa0969340:intron | 20.0% |
| !! | TTAAAAACTACAATGAATTC+TGG | + | chr6_4:838663-838682 | None:intergenic | 20.0% |
| ! | AAATTGAAGTAAACGGAAAA+GGG | + | chr6_4:833815-833834 | None:intergenic | 25.0% |
| ! | AAAATTGAAGTAAACGGAAA+AGG | + | chr6_4:833816-833835 | None:intergenic | 25.0% |
| !! | TTTAAGGAAAAAGCGTAAAA+GGG | + | chr6_4:833865-833884 | None:intergenic | 25.0% |
| ! | AATTGGTATTTCATAGGAAT+AGG | - | chr6_4:833968-833987 | Msa0969340:CDS | 25.0% |
| !!! | ATTCGATGTTTTTGTCTTTT+TGG | - | chr6_4:834009-834028 | Msa0969340:CDS | 25.0% |
| ! | AACAATAAAAGCTATCGTTA+TGG | + | chr6_4:834103-834122 | None:intergenic | 25.0% |
| ! | GTATTCGAATTTATGGTTTA+AGG | - | chr6_4:834430-834449 | Msa0969340:CDS | 25.0% |
| ! | AATTGTTTAGATTAGAACAG+GGG | + | chr6_4:834521-834540 | None:intergenic | 25.0% |
| ! | CAATTGTTTAGATTAGAACA+GGG | + | chr6_4:834522-834541 | None:intergenic | 25.0% |
| ! | CTGTTCTAATCTAAACAATT+GGG | - | chr6_4:834521-834540 | Msa0969340:CDS | 25.0% |
| !!! | TGCCATTTTCTTTTTATTAG+CGG | + | chr6_4:834547-834566 | None:intergenic | 25.0% |
| ! | TACATTATGAGTATAGAATC+TGG | - | chr6_4:834803-834822 | Msa0969340:CDS | 25.0% |
| ! | ACATTATGAGTATAGAATCT+GGG | - | chr6_4:834804-834823 | Msa0969340:CDS | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr6_4:835023-835042 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr6_4:835027-835046 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr6_4:835061-835080 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr6_4:835062-835081 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr6_4:835098-835117 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | - | chr6_4:835233-835252 | Msa0969340:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | - | chr6_4:835234-835253 | Msa0969340:intron | 25.0% |
| ! | TTTAATTAGTTGGAGTTTAG+TGG | + | chr6_4:835294-835313 | None:intergenic | 25.0% |
| !! | GTATCTTTTCTCTCTTTTAT+GGG | + | chr6_4:835334-835353 | None:intergenic | 25.0% |
| !! | TGTATCTTTTCTCTCTTTTA+TGG | + | chr6_4:835335-835354 | None:intergenic | 25.0% |
| ! | ATTATACCAAACCTTTATAC+AGG | - | chr6_4:835395-835414 | Msa0969340:intron | 25.0% |
| !!! | ATTTATTTTGCCGCAATTTT+GGG | + | chr6_4:835537-835556 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATTGAGAAGCA+CGG | + | chr6_4:835791-835810 | None:intergenic | 25.0% |
| ! | CAACTTATGTTGTAAAGTAT+TGG | - | chr6_4:835880-835899 | Msa0969340:intron | 25.0% |
| !!! | AAGTTTATTCAAGCTGATTT+TGG | - | chr6_4:835953-835972 | Msa0969340:intron | 25.0% |
| !!! | TACAAGTTTGTTATAAGTTG+TGG | + | chr6_4:836186-836205 | None:intergenic | 25.0% |
| ! | CAATGAAGTAGTTAAATTCT+TGG | + | chr6_4:836381-836400 | None:intergenic | 25.0% |
| ! | CAAGAATTTAACTACTTCAT+TGG | - | chr6_4:836379-836398 | Msa0969340:intron | 25.0% |
| !!! | GTCTATGTTTAATTTTGTTG+TGG | - | chr6_4:836509-836528 | Msa0969340:intron | 25.0% |
| ! | TTTCTTTAATTCTTTCCTTG+GGG | + | chr6_4:836835-836854 | None:intergenic | 25.0% |
| ! | CATTTCTTTAATTCTTTCCT+TGG | + | chr6_4:836837-836856 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAATTAAAGAAA+TGG | - | chr6_4:836835-836854 | Msa0969340:intron | 25.0% |
| ! | AATCATGAACTGTCATATTT+AGG | - | chr6_4:837008-837027 | Msa0969340:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | - | chr6_4:837065-837084 | Msa0969340:intron | 25.0% |
| !! | TGAAAATGCTTTTGTGATTA+TGG | + | chr6_4:837143-837162 | None:intergenic | 25.0% |
| !! | TGATTGACTTTAATGTTTCA+AGG | - | chr6_4:837395-837414 | Msa0969340:intron | 25.0% |
| ! | ATGTTTCAAGGACAATAATT+TGG | - | chr6_4:837407-837426 | Msa0969340:intron | 25.0% |
| ! | GTTTAATAGATACCATAACT+AGG | + | chr6_4:837434-837453 | None:intergenic | 25.0% |
| ! | TTGTTACCGTTATTATATAC+AGG | - | chr6_4:837484-837503 | Msa0969340:intron | 25.0% |
| ! | TTCAGCTTCATATTCTTTAT+CGG | + | chr6_4:837801-837820 | None:intergenic | 25.0% |
| !!! | AATAATACAAGTATTGGCAA+TGG | - | chr6_4:838154-838173 | Msa0969340:intron | 25.0% |
| ! | AAAACTATTACGATATTGAG+CGG | + | chr6_4:838392-838411 | None:intergenic | 25.0% |
| CTCATTCTTCAAACTGAAAA+GGG | + | chr6_4:833675-833694 | None:intergenic | 30.0% | |
| ACTCATTCTTCAAACTGAAA+AGG | + | chr6_4:833676-833695 | None:intergenic | 30.0% | |
| AGTTGAAAGAGAGATGAAAT+GGG | + | chr6_4:833769-833788 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAGATGAAA+TGG | + | chr6_4:833770-833789 | None:intergenic | 30.0% | |
| ! | TTAAGGAAAAAGCGTAAAAG+GGG | + | chr6_4:833864-833883 | None:intergenic | 30.0% |
| ! | CTTTAAGGAAAAAGCGTAAA+AGG | + | chr6_4:833866-833885 | None:intergenic | 30.0% |
| ! | AAACCGTTGAATCTTTTGAA+TGG | - | chr6_4:834128-834147 | Msa0969340:CDS | 30.0% |
| GATCCATTCAAAAGATTCAA+CGG | + | chr6_4:834134-834153 | None:intergenic | 30.0% | |
| AAGAGTCTGGTAAAACATTA+AGG | - | chr6_4:834222-834241 | Msa0969340:CDS | 30.0% | |
| AGAGTCTGGTAAAACATTAA+GGG | - | chr6_4:834223-834242 | Msa0969340:CDS | 30.0% | |
| CAACATCTCAAAGCAATATA+TGG | + | chr6_4:834393-834412 | None:intergenic | 30.0% | |
| AAAGCCTTCTTAAACACTTT+AGG | - | chr6_4:834495-834514 | Msa0969340:CDS | 30.0% | |
| CCAATTGTTTAGATTAGAAC+AGG | + | chr6_4:834523-834542 | None:intergenic | 30.0% | |
| CCTGTTCTAATCTAAACAAT+TGG | - | chr6_4:834520-834539 | Msa0969340:CDS | 30.0% | |
| TTGATGCATGATTGATCATA+AGG | - | chr6_4:834686-834705 | Msa0969340:CDS | 30.0% | |
| TGATGCATGATTGATCATAA+GGG | - | chr6_4:834687-834706 | Msa0969340:CDS | 30.0% | |
| ATCATAAGGGGATAATTTGA+TGG | - | chr6_4:834700-834719 | Msa0969340:CDS | 30.0% | |
| AGAGTGATTCAAAATAGACA+TGG | - | chr6_4:834730-834749 | Msa0969340:CDS | 30.0% | |
| AAAATAGACATGGAACTGTT+AGG | - | chr6_4:834740-834759 | Msa0969340:CDS | 30.0% | |
| !! | TTTTGTTTATCTTGCCATCA+CGG | - | chr6_4:834919-834938 | Msa0969340:CDS | 30.0% |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr6_4:835059-835078 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr6_4:835060-835079 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr6_4:835160-835179 | Msa0969340:intron | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | - | chr6_4:835235-835254 | Msa0969340:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | - | chr6_4:835236-835255 | Msa0969340:intron | 30.0% | |
| ! | AGTTCTCTTTGTTCTAAATG+TGG | + | chr6_4:835514-835533 | None:intergenic | 30.0% |
| !!! | GATTTATTTTGCCGCAATTT+TGG | + | chr6_4:835538-835557 | None:intergenic | 30.0% |
| TCAGACAAAATTAAATGCTG+TGG | - | chr6_4:835576-835595 | Msa0969340:CDS | 30.0% | |
| ! | ATCCTTTATTTGTGTGTAGT+CGG | - | chr6_4:835627-835646 | Msa0969340:CDS | 30.0% |
| TTTCTTCTGAATTCTGATCT+GGG | - | chr6_4:835684-835703 | Msa0969340:CDS | 30.0% | |
| ! | TTTTATGGTTTAAAGGCTCA+TGG | - | chr6_4:835810-835829 | Msa0969340:CDS | 30.0% |
| ACAAACTTGTATGACAATTC+TGG | - | chr6_4:836195-836214 | Msa0969340:intron | 30.0% | |
| !! | TGGCGATTTTAACAAAATTG+AGG | - | chr6_4:836215-836234 | Msa0969340:intron | 30.0% |
| !!! | GCTTGAAAATTTTCAAGTCA+CGG | + | chr6_4:836440-836459 | None:intergenic | 30.0% |
| CTTCAGGCGTATAAAAAAAT+TGG | - | chr6_4:836692-836711 | Msa0969340:intron | 30.0% | |
| AACAAGAATTATGTTCCAGT+TGG | - | chr6_4:836722-836741 | Msa0969340:intron | 30.0% | |
| !!! | TAGGTATCAAATTTTTGGGT+TGG | + | chr6_4:836949-836968 | None:intergenic | 30.0% |
| !! | CTCTTTGTAAGGGTATTAAT+AGG | + | chr6_4:836968-836987 | None:intergenic | 30.0% |
| CTATTAATACCCTTACAAAG+AGG | - | chr6_4:836966-836985 | Msa0969340:intron | 30.0% | |
| TTGTGATTATGGTCAATTCA+AGG | + | chr6_4:837132-837151 | None:intergenic | 30.0% | |
| !!! | CACAAAAGCATTTTCAAATG+TGG | - | chr6_4:837147-837166 | Msa0969340:intron | 30.0% |
| ACTAACGAAAGAACATTTGA+TGG | + | chr6_4:837193-837212 | None:intergenic | 30.0% | |
| TGTTCTTTCGTTAGTTAGTT+TGG | - | chr6_4:837198-837217 | Msa0969340:intron | 30.0% | |
| TAATGTAAGACACACATTCA+AGG | + | chr6_4:837225-837244 | None:intergenic | 30.0% | |
| CTAATATAATACACACTCAG+TGG | - | chr6_4:837267-837286 | Msa0969340:intron | 30.0% | |
| TTGTGAACATTCAGAAGTTT+CGG | - | chr6_4:837304-837323 | Msa0969340:intron | 30.0% | |
| CTAAAATTACTGTTTGCTCT+TGG | - | chr6_4:837352-837371 | Msa0969340:intron | 30.0% | |
| CAATAATTTGGTCCTAGTTA+TGG | - | chr6_4:837419-837438 | Msa0969340:intron | 30.0% | |
| ATAGGGCCTGTATATAATAA+CGG | + | chr6_4:837493-837512 | None:intergenic | 30.0% | |
| TCATTAGGTTCTATTACTGA+CGG | + | chr6_4:837707-837726 | None:intergenic | 30.0% | |
| TCAGTAATAGAACCTAATGA+TGG | - | chr6_4:837707-837726 | Msa0969340:intron | 30.0% | |
| AATAGAACCTAATGATGGTT+TGG | - | chr6_4:837712-837731 | Msa0969340:intron | 30.0% | |
| TAAAGAATATGAAGCTGAAG+AGG | - | chr6_4:837802-837821 | Msa0969340:intron | 30.0% | |
| AGTTTGGAAGACTTAGATAT+TGG | - | chr6_4:837840-837859 | Msa0969340:intron | 30.0% | |
| TCTAGAAATGATGACTATGA+TGG | - | chr6_4:837905-837924 | Msa0969340:intron | 30.0% | |
| ! | AGCTAAATTTAGGACGAATA+TGG | - | chr6_4:838210-838229 | Msa0969340:CDS | 30.0% |
| ! | GCTAAATTTAGGACGAATAT+GGG | - | chr6_4:838211-838230 | Msa0969340:CDS | 30.0% |
| !!! | CCTTACTATTTTGACTTGTA+GGG | + | chr6_4:838555-838574 | None:intergenic | 30.0% |
| !!! | ACCTTACTATTTTGACTTGT+AGG | + | chr6_4:838556-838575 | None:intergenic | 30.0% |
| TACAAGTCAAAATAGTAAGG+TGG | - | chr6_4:838555-838574 | Msa0969340:intron | 30.0% | |
| ATTCTGGTATAGCATTTACT+TGG | + | chr6_4:838647-838666 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTGACAATCAGAA+CGG | - | chr6_4:838684-838703 | Msa0969340:CDS | 30.0% |
| TTTGTTCAGATGTGTACTTT+AGG | - | chr6_4:838784-838803 | Msa0969340:five_prime_UTR | 30.0% | |
| TTGTTCAGATGTGTACTTTA+GGG | - | chr6_4:838785-838804 | Msa0969340:five_prime_UTR | 30.0% | |
| AACCAATCAACAATTTCTTC+AGG | + | chr6_4:838879-838898 | None:intergenic | 30.0% | |
| TGGTTGAAACAAAATCATCA+AGG | - | chr6_4:838894-838913 | Msa0969340:five_prime_UTR | 30.0% | |
| GGTTGAAACAAAATCATCAA+GGG | - | chr6_4:838895-838914 | Msa0969340:five_prime_UTR | 30.0% | |
| AAACTGAAAAGGGAGGAAAA+TGG | + | chr6_4:833665-833684 | None:intergenic | 35.0% | |
| ATTCTTCAAACTGAAAAGGG+AGG | + | chr6_4:833672-833691 | None:intergenic | 35.0% | |
| AACTTCAATCCAATCTCTTC+AGG | - | chr6_4:833785-833804 | Msa0969340:three_prime_UTR | 35.0% | |
| AAAGCGTAAAAGGGGTTTAA+GGG | + | chr6_4:833856-833875 | None:intergenic | 35.0% | |
| ! | AAAAGCGTAAAAGGGGTTTA+AGG | + | chr6_4:833857-833876 | None:intergenic | 35.0% |
| TTCACCAAGATTCTAGTCTA+AGG | - | chr6_4:833903-833922 | Msa0969340:CDS | 35.0% | |
| ACAACCTTAGACTAGAATCT+TGG | + | chr6_4:833910-833929 | None:intergenic | 35.0% | |
| TTCAGAAATGTTGTGCCTTT+AGG | - | chr6_4:834032-834051 | Msa0969340:CDS | 35.0% | |
| ! | TTTTGAATGGATCCTTGTGT+CGG | - | chr6_4:834141-834160 | Msa0969340:CDS | 35.0% |
| TCGACAAACAGTTATTAGAC+GGG | + | chr6_4:834339-834358 | None:intergenic | 35.0% | |
| GTCGACAAACAGTTATTAGA+CGG | + | chr6_4:834340-834359 | None:intergenic | 35.0% | |
| GGCCGCTAATAAAAAGAAAA+TGG | - | chr6_4:834542-834561 | Msa0969340:CDS | 35.0% | |
| GATGCATGATTGATCATAAG+GGG | - | chr6_4:834688-834707 | Msa0969340:CDS | 35.0% | |
| GATTGAGATTCTGTCAAGAA+GGG | - | chr6_4:834762-834781 | Msa0969340:CDS | 35.0% | |
| ATTGAGATTCTGTCAAGAAG+GGG | - | chr6_4:834763-834782 | Msa0969340:CDS | 35.0% | |
| GTATAGAATCTGGGTTTAAC+AGG | - | chr6_4:834813-834832 | Msa0969340:CDS | 35.0% | |
| TTTGTTTATCTTGCCATCAC+GGG | - | chr6_4:834920-834939 | Msa0969340:CDS | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | + | chr6_4:835011-835030 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr6_4:835012-835031 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr6_4:835047-835066 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr6_4:835048-835067 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | - | chr6_4:835237-835256 | Msa0969340:intron | 35.0% | |
| AAGCTTCCTGTATAAAGGTT+TGG | + | chr6_4:835404-835423 | None:intergenic | 35.0% | |
| ! | CTTTGTTCTAAATGTGGCAT+GGG | + | chr6_4:835508-835527 | None:intergenic | 35.0% |
| ! | TCTTTGTTCTAAATGTGGCA+TGG | + | chr6_4:835509-835528 | None:intergenic | 35.0% |
| AAAGAGAACTCCCAAAATTG+CGG | - | chr6_4:835524-835543 | Msa0969340:CDS | 35.0% | |
| AATTGCGGCAAAATAAATCC+AGG | - | chr6_4:835539-835558 | Msa0969340:CDS | 35.0% | |
| TTTATTTGTGTGTAGTCGGT+GGG | - | chr6_4:835631-835650 | Msa0969340:CDS | 35.0% | |
| GTTTCTTCTGAATTCTGATC+TGG | - | chr6_4:835683-835702 | Msa0969340:CDS | 35.0% | |
| !! | TTTTAATTGAGAAGCACGGT+GGG | + | chr6_4:835787-835806 | None:intergenic | 35.0% |
| !!! | ATTTTAATTGAGAAGCACGG+TGG | + | chr6_4:835788-835807 | None:intergenic | 35.0% |
| GTGAAAGTAGTAAGCAGAAT+TGG | - | chr6_4:836097-836116 | Msa0969340:intron | 35.0% | |
| ! | TTTGTTATAAGTTGTGGCCA+TGG | + | chr6_4:836180-836199 | None:intergenic | 35.0% |
| GCTTAAGAAATATGAGCTAC+CGG | - | chr6_4:836622-836641 | Msa0969340:intron | 35.0% | |
| TGCAAAATATGCATCTCCAT+TGG | - | chr6_4:836771-836790 | Msa0969340:intron | 35.0% | |
| AAAACAATCATCATGTTCCG+TGG | - | chr6_4:836911-836930 | Msa0969340:intron | 35.0% | |
| !!! | GTATCAAATTTTTGGGTTGG+CGG | + | chr6_4:836946-836965 | None:intergenic | 35.0% |
| TAATACCCTTACAAAGAGGA+AGG | - | chr6_4:836970-836989 | Msa0969340:intron | 35.0% | |
| TCTTACCTTCCTCTTTGTAA+GGG | + | chr6_4:836978-836997 | None:intergenic | 35.0% | |
| ATCTTACCTTCCTCTTTGTA+AGG | + | chr6_4:836979-836998 | None:intergenic | 35.0% | |
| ! | TGATGGACAAAACTGACTAA+CGG | + | chr6_4:837176-837195 | None:intergenic | 35.0% |
| GTGTCTTACATTAGTCAGTT+TGG | - | chr6_4:837232-837251 | Msa0969340:intron | 35.0% | |
| ! | TTTTAGTCCCTAAATGTGTG+AGG | + | chr6_4:837338-837357 | None:intergenic | 35.0% |
| TTATATACAGGCCCTATTCA+AGG | - | chr6_4:837496-837515 | Msa0969340:intron | 35.0% | |
| AATGCCATTGACAAGAAAGA+TGG | - | chr6_4:837653-837672 | Msa0969340:intron | 35.0% | |
| ACTTCCATCTTTCTTGTCAA+TGG | + | chr6_4:837660-837679 | None:intergenic | 35.0% | |
| AGCTTCATATTCTTTATCGG+CGG | + | chr6_4:837798-837817 | None:intergenic | 35.0% | |
| ! | TCCAAACTCTTCCTTTTCTT+TGG | + | chr6_4:837828-837847 | None:intergenic | 35.0% |
| TATTGGAACAGAGAAGAGTA+TGG | - | chr6_4:837857-837876 | Msa0969340:intron | 35.0% | |
| ! | AAATGATGACTATGATGGTG+AGG | - | chr6_4:837910-837929 | Msa0969340:intron | 35.0% |
| AGAATATACATCCCAAGCAT+CGG | - | chr6_4:837954-837973 | Msa0969340:intron | 35.0% | |
| ATTCTCTTCATCGTCACTAT+CGG | + | chr6_4:837984-838003 | None:intergenic | 35.0% | |
| ! | GATGTTGACAGCAATTTTGA+TGG | - | chr6_4:838076-838095 | Msa0969340:intron | 35.0% |
| ATTGGCAATGGTCAAGTTAA+TGG | - | chr6_4:838166-838185 | Msa0969340:CDS | 35.0% | |
| CGAAGTTGAAAATGCAATGT+GGG | - | chr6_4:838267-838286 | Msa0969340:CDS | 35.0% | |
| CCCTACAAGTCAAAATAGTA+AGG | - | chr6_4:838552-838571 | Msa0969340:intron | 35.0% | |
| TGTGTACACCGAAGTTATTT+AGG | - | chr6_4:838835-838854 | Msa0969340:five_prime_UTR | 35.0% | |
| TACACCGAAGTTATTTAGGT+GGG | - | chr6_4:838839-838858 | Msa0969340:five_prime_UTR | 35.0% | |
| TGCCTGAAGAAATTGTTGAT+TGG | - | chr6_4:838874-838893 | Msa0969340:five_prime_UTR | 35.0% | |
| ! | GAGAGATGAAATGGGTTTGA+GGG | + | chr6_4:833761-833780 | None:intergenic | 40.0% |
| ! | AGAGAGATGAAATGGGTTTG+AGG | + | chr6_4:833762-833781 | None:intergenic | 40.0% |
| AAGGGTTTACCTGAAGAGAT+TGG | + | chr6_4:833797-833816 | None:intergenic | 40.0% | |
| !! | AATGTTGTGCCTTTAGGACA+AGG | - | chr6_4:834038-834057 | Msa0969340:CDS | 40.0% |
| TGCTCTATTCCTTGTCCTAA+AGG | + | chr6_4:834050-834069 | None:intergenic | 40.0% | |
| TTTGAATGGATCCTTGTGTC+GGG | - | chr6_4:834142-834161 | Msa0969340:CDS | 40.0% | |
| AGAAGAATGCAGAAAGAGTC+TGG | - | chr6_4:834209-834228 | Msa0969340:CDS | 40.0% | |
| GAAGAAACTTATGACTGACG+AGG | - | chr6_4:834271-834290 | Msa0969340:CDS | 40.0% | |
| GGATTGAGATTCTGTCAAGA+AGG | - | chr6_4:834761-834780 | Msa0969340:CDS | 40.0% | |
| !! | TGGGTTTAACAGGTGTTGAA+TGG | - | chr6_4:834823-834842 | Msa0969340:CDS | 40.0% |
| ACAAAAGGCTAGCGAAAACA+TGG | + | chr6_4:834894-834913 | None:intergenic | 40.0% | |
| TTGTTTATCTTGCCATCACG+GGG | - | chr6_4:834921-834940 | Msa0969340:CDS | 40.0% | |
| AGCTCAAGCTTCCTGTATAA+AGG | + | chr6_4:835409-835428 | None:intergenic | 40.0% | |
| TGGTAAAGCTTTCGTCAATG+CGG | + | chr6_4:835466-835485 | None:intergenic | 40.0% | |
| CTGAACAGAAATTACCTTCC+TGG | + | chr6_4:835560-835579 | None:intergenic | 40.0% | |
| ! | CACCGACTACACACAAATAA+AGG | + | chr6_4:835632-835651 | None:intergenic | 40.0% |
| ! | CTTTATTTGTGTGTAGTCGG+TGG | - | chr6_4:835630-835649 | Msa0969340:CDS | 40.0% |
| GGCCAAAGTCATGAAAGTTT+GGG | - | chr6_4:835705-835724 | Msa0969340:CDS | 40.0% | |
| ! | TTTAATTGAGAAGCACGGTG+GGG | + | chr6_4:835786-835805 | None:intergenic | 40.0% |
| GTGCTCGTTATATGATCTCT+TGG | - | chr6_4:836531-836550 | Msa0969340:intron | 40.0% | |
| TTTGCCTGCAAACAGTTGAA+GGG | + | chr6_4:836575-836594 | None:intergenic | 40.0% | |
| TTTATACGCCTGAAGCTGTT+CGG | + | chr6_4:836687-836706 | None:intergenic | 40.0% | |
| CAGTCTCATGAAACTTCCAA+TGG | + | chr6_4:836790-836809 | None:intergenic | 40.0% | |
| ATGGTCAATTCAAGGACTAC+AGG | + | chr6_4:837124-837143 | None:intergenic | 40.0% | |
| TGACACTACCTCACACATTT+AGG | - | chr6_4:837327-837346 | Msa0969340:intron | 40.0% | |
| GACACTACCTCACACATTTA+GGG | - | chr6_4:837328-837347 | Msa0969340:intron | 40.0% | |
| !! | CTCAAATCTGGCCTTGAATA+GGG | + | chr6_4:837510-837529 | None:intergenic | 40.0% |
| ! | TTCAAGAGCTTGCTCAAATC+TGG | + | chr6_4:837522-837541 | None:intergenic | 40.0% |
| AGAAAATAGAACAGGACCTG+CGG | - | chr6_4:837561-837580 | Msa0969340:intron | 40.0% | |
| ! | GTCAATGGCATTGAAGAAAG+TGG | + | chr6_4:837645-837664 | None:intergenic | 40.0% |
| TTGTCTCCACGGTTAACATA+AGG | + | chr6_4:837683-837702 | None:intergenic | 40.0% | |
| ! | AGAACCTAATGATGGTTTGG+AGG | - | chr6_4:837715-837734 | Msa0969340:intron | 40.0% |
| GATTCCTCCAAACCATCATT+AGG | + | chr6_4:837722-837741 | None:intergenic | 40.0% | |
| GCCAAAGAAAAGGAAGAGTT+TGG | - | chr6_4:837824-837843 | Msa0969340:intron | 40.0% | |
| AGGTAGGTTCAAGGAAAGTA+GGG | - | chr6_4:838114-838133 | Msa0969340:intron | 40.0% | |
| GACACGGTGAAGCTAAATTT+AGG | - | chr6_4:838200-838219 | Msa0969340:CDS | 40.0% | |
| GCGAAGTTGAAAATGCAATG+TGG | - | chr6_4:838266-838285 | Msa0969340:CDS | 40.0% | |
| TGAAAATGCAATGTGGGAGT+CGG | - | chr6_4:838273-838292 | Msa0969340:CDS | 40.0% | |
| !! | AATGACTCGGTACATTTGAG+AGG | - | chr6_4:838307-838326 | Msa0969340:CDS | 40.0% |
| AATGCACCAAAGAGTTTGAG+AGG | - | chr6_4:838412-838431 | Msa0969340:CDS | 40.0% | |
| ! | CCTTTGGTGATCTCTTCTTA+TGG | + | chr6_4:838594-838613 | None:intergenic | 40.0% |
| CCATAAGAAGAGATCACCAA+AGG | - | chr6_4:838591-838610 | Msa0969340:intron | 40.0% | |
| AAAGGAAGCTGATGAAGCTT+GGG | - | chr6_4:838609-838628 | Msa0969340:intron | 40.0% | |
| TGTTTGACAATCAGAACGGA+TGG | - | chr6_4:838688-838707 | Msa0969340:CDS | 40.0% | |
| ! | GTTTCTGAAAAACGAGAGGT+GGG | + | chr6_4:838726-838745 | None:intergenic | 40.0% |
| ! | TGTGGTTTCTGAAAAACGAG+AGG | + | chr6_4:838730-838749 | None:intergenic | 40.0% |
| GTACACCGAAGTTATTTAGG+TGG | - | chr6_4:838838-838857 | Msa0969340:five_prime_UTR | 40.0% | |
| GAGAAGAGAAGGGTTTCAAG+GGG | + | chr6_4:833566-833585 | None:intergenic | 45.0% | |
| GGAGAAGAGAAGGGTTTCAA+GGG | + | chr6_4:833567-833586 | None:intergenic | 45.0% | |
| AGGAGAAGAGAAGGGTTTCA+AGG | + | chr6_4:833568-833587 | None:intergenic | 45.0% | |
| CTGAAAAGGGAGGAAAATGG+CGG | + | chr6_4:833662-833681 | None:intergenic | 45.0% | |
| TTGAATGGATCCTTGTGTCG+GGG | - | chr6_4:834143-834162 | Msa0969340:CDS | 45.0% | |
| ! | AGGAAAGAGTATGCGAAGCA+AGG | - | chr6_4:834181-834200 | Msa0969340:CDS | 45.0% |
| ! | AAAGAGTATGCGAAGCAAGG+TGG | - | chr6_4:834184-834203 | Msa0969340:CDS | 45.0% |
| AACTTATGACTGACGAGGAG+CGG | - | chr6_4:834276-834295 | Msa0969340:CDS | 45.0% | |
| ! | GGGGCCTAAAGTGTTTAAGA+AGG | + | chr6_4:834502-834521 | None:intergenic | 45.0% |
| TGTTTATCTTGCCATCACGG+GGG | - | chr6_4:834922-834941 | Msa0969340:CDS | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr6_4:835003-835022 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr6_4:835007-835026 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | - | chr6_4:835248-835267 | Msa0969340:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | - | chr6_4:835249-835268 | Msa0969340:intron | 45.0% | |
| CTTTCGTCAATGCGGTTTCA+GGG | + | chr6_4:835458-835477 | None:intergenic | 45.0% | |
| GCGGCAAAATAAATCCAGGA+AGG | - | chr6_4:835543-835562 | Msa0969340:CDS | 45.0% | |
| AGAATCGAACTTCGTGATCG+AGG | + | chr6_4:835605-835624 | None:intergenic | 45.0% | |
| GGGCCAAAGTCATGAAAGTT+TGG | - | chr6_4:835704-835723 | Msa0969340:CDS | 45.0% | |
| GGCCCAAACTTTCATGACTT+TGG | + | chr6_4:835710-835729 | None:intergenic | 45.0% | |
| ACTTTGATGCCTGTGCGAAA+TGG | - | chr6_4:836137-836156 | Msa0969340:intron | 45.0% | |
| CTTTGATGCCTGTGCGAAAT+GGG | - | chr6_4:836138-836157 | Msa0969340:intron | 45.0% | |
| TTTGATGCCTGTGCGAAATG+GGG | - | chr6_4:836139-836158 | Msa0969340:intron | 45.0% | |
| GGCAAGTTCAAGTGTTTCCA+TGG | - | chr6_4:836160-836179 | Msa0969340:intron | 45.0% | |
| AAGAATGCGTGCATGTGTAC+TGG | - | chr6_4:836267-836286 | Msa0969340:intron | 45.0% | |
| CTTTGCCTGCAAACAGTTGA+AGG | + | chr6_4:836576-836595 | None:intergenic | 45.0% | |
| TTATACGCCTGAAGCTGTTC+GGG | + | chr6_4:836686-836705 | None:intergenic | 45.0% | |
| ! | TATGTTCCAGTTGGTGTTCG+TGG | - | chr6_4:836731-836750 | Msa0969340:intron | 45.0% |
| AATACTCCACGAACACCAAC+TGG | + | chr6_4:836740-836759 | None:intergenic | 45.0% | |
| ! | GTTGGTGTTCGTGGAGTATT+TGG | - | chr6_4:836740-836759 | Msa0969340:intron | 45.0% |
| TTGTTGTGACAACTTCCCCA+AGG | - | chr6_4:836817-836836 | Msa0969340:intron | 45.0% | |
| TCAATGCTTGCAAGACTGAG+TGG | - | chr6_4:836860-836879 | Msa0969340:intron | 45.0% | |
| GTTGGCGGTAATTTCTACCA+CGG | + | chr6_4:836931-836950 | None:intergenic | 45.0% | |
| !! | GCTCAAATCTGGCCTTGAAT+AGG | + | chr6_4:837511-837530 | None:intergenic | 45.0% |
| AGAAAGTGGAAGCCACTCTT+TGG | + | chr6_4:837631-837650 | None:intergenic | 45.0% | |
| GGAAGTCCTTATGTTAACCG+TGG | - | chr6_4:837674-837693 | Msa0969340:intron | 45.0% | |
| CTGAACAGGAAGAGCTAGAT+CGG | - | chr6_4:837750-837769 | Msa0969340:intron | 45.0% | |
| TCGGTTCATCGCTGATATAG+AGG | - | chr6_4:837769-837788 | Msa0969340:intron | 45.0% | |
| AGCTGAAGAGGCCAAAGAAA+AGG | - | chr6_4:837814-837833 | Msa0969340:intron | 45.0% | |
| ! | TGGAACAGAGAAGAGTATGG+TGG | - | chr6_4:837860-837879 | Msa0969340:intron | 45.0% |
| ! | GACTATGATGGTGAGGTTAG+AGG | - | chr6_4:837917-837936 | Msa0969340:intron | 45.0% |
| AGGTTAGAGGCTCAAGAGTT+CGG | - | chr6_4:837930-837949 | Msa0969340:intron | 45.0% | |
| GCTGTCAACATCACTGTCAT+CGG | + | chr6_4:838068-838087 | None:intergenic | 45.0% | |
| TGAAGCTAGAGGTAGGTTCA+AGG | - | chr6_4:838105-838124 | Msa0969340:intron | 45.0% | |
| GAGGTAGGTTCAAGGAAAGT+AGG | - | chr6_4:838113-838132 | Msa0969340:intron | 45.0% | |
| GGTAGGTTCAAGGAAAGTAG+GGG | - | chr6_4:838115-838134 | Msa0969340:intron | 45.0% | |
| GTAGGTTCAAGGAAAGTAGG+GGG | - | chr6_4:838116-838135 | Msa0969340:intron | 45.0% | |
| GGCAATGGTCAAGTTAATGG+TGG | - | chr6_4:838169-838188 | Msa0969340:CDS | 45.0% | |
| GGATTTGGAGGACAATGACT+CGG | - | chr6_4:838294-838313 | Msa0969340:CDS | 45.0% | |
| ACCAAAGAGTTTGAGAGGCA+GGG | - | chr6_4:838417-838436 | Msa0969340:CDS | 45.0% | |
| CAAGCTTCATCAGCTTCCTT+TGG | + | chr6_4:838610-838629 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGATGAAGCT+TGG | - | chr6_4:838608-838627 | Msa0969340:intron | 45.0% | |
| ! | GGTTTCTGAAAAACGAGAGG+TGG | + | chr6_4:838727-838746 | None:intergenic | 45.0% |
| ACCGAAGTTATTTAGGTGGG+TGG | - | chr6_4:838842-838861 | Msa0969340:five_prime_UTR | 45.0% | |
| CCCACCCACCTAAATAACTT+CGG | + | chr6_4:838846-838865 | None:intergenic | 45.0% | |
| CCGAAGTTATTTAGGTGGGT+GGG | - | chr6_4:838843-838862 | Msa0969340:five_prime_UTR | 45.0% | |
| TTGATTACGGAGGAGAGTGG+CGG | + | chr6_4:833607-833626 | None:intergenic | 50.0% | |
| ! | GAGTTGATTACGGAGGAGAG+TGG | + | chr6_4:833610-833629 | None:intergenic | 50.0% |
| AAATGGCGGCAGTGAGGATA+AGG | + | chr6_4:833648-833667 | None:intergenic | 50.0% | |
| GTTCTTACAAACCCCCGTGA+TGG | + | chr6_4:834936-834955 | None:intergenic | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr6_4:835004-835023 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | chr6_4:835253-835272 | Msa0969340:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr6_4:835257-835276 | Msa0969340:intron | 50.0% | |
| GCTTTCGTCAATGCGGTTTC+AGG | + | chr6_4:835459-835478 | None:intergenic | 50.0% | |
| !! | GTTACTGACTCGACTGGCTT+TGG | + | chr6_4:835486-835505 | None:intergenic | 50.0% |
| TGGGATGAGATGTGTGTGGT+GGG | - | chr6_4:835650-835669 | Msa0969340:CDS | 50.0% | |
| GTTTGGGCCCCAAATATCTG+AGG | - | chr6_4:835721-835740 | Msa0969340:CDS | 50.0% | |
| CTTAGAGTGACTGATCGACG+AGG | + | chr6_4:836005-836024 | None:intergenic | 50.0% | |
| CCTGCAAACAGTTGAAGGGT+AGG | + | chr6_4:836571-836590 | None:intergenic | 50.0% | |
| CCTACCCTTCAACTGTTTGC+AGG | - | chr6_4:836568-836587 | Msa0969340:intron | 50.0% | |
| TGTTCGGGTGTAAAGAGCTC+TGG | + | chr6_4:836671-836690 | None:intergenic | 50.0% | |
| CTTTACACCCGAACAGCTTC+AGG | - | chr6_4:836676-836695 | Msa0969340:intron | 50.0% | |
| ! | GGTGTTCGTGGAGTATTTGG+AGG | - | chr6_4:836743-836762 | Msa0969340:intron | 50.0% |
| ATGCTTGCAAGACTGAGTGG+TGG | - | chr6_4:836863-836882 | Msa0969340:intron | 50.0% | |
| TGCTTGCAAGACTGAGTGGT+GGG | - | chr6_4:836864-836883 | Msa0969340:intron | 50.0% | |
| AAATAGAACAGGACCTGCGG+CGG | - | chr6_4:837564-837583 | Msa0969340:intron | 50.0% | |
| TCCTGAGGATCCAACTGCAA+TGG | - | chr6_4:837598-837617 | Msa0969340:intron | 50.0% | |
| AATGGCCAGCATCCAAAGAG+TGG | - | chr6_4:837616-837635 | Msa0969340:intron | 50.0% | |
| TTACTGACGGCTTGTCTCCA+CGG | + | chr6_4:837694-837713 | None:intergenic | 50.0% | |
| GGAATCAGATCCTGCTGAAC+AGG | - | chr6_4:837736-837755 | Msa0969340:intron | 50.0% | |
| !! | TCTAGCTCTTCCTGTTCAGC+AGG | + | chr6_4:837749-837768 | None:intergenic | 50.0% |
| !! | GATGGCTCTGATGAAGCTAG+AGG | - | chr6_4:838094-838113 | Msa0969340:intron | 50.0% |
| GCTCTGATGAAGCTAGAGGT+AGG | - | chr6_4:838098-838117 | Msa0969340:intron | 50.0% | |
| AAAGTAGGGGGAGAAGAGAG+AGG | - | chr6_4:838128-838147 | Msa0969340:intron | 50.0% | |
| AATGGTGGTCAGAGCAGACA+CGG | - | chr6_4:838184-838203 | Msa0969340:CDS | 50.0% | |
| TGCAATGTGGGAGTCGGATT+TGG | - | chr6_4:838279-838298 | Msa0969340:CDS | 50.0% | |
| AATGTGGGAGTCGGATTTGG+AGG | - | chr6_4:838282-838301 | Msa0969340:CDS | 50.0% | |
| CACCAAAGAGTTTGAGAGGC+AGG | - | chr6_4:838416-838435 | Msa0969340:CDS | 50.0% | |
| TCCCTGCCTCTCAAACTCTT+TGG | + | chr6_4:838421-838440 | None:intergenic | 50.0% | |
| CCATGGACACGGATTTAGTG+CGG | + | chr6_4:838456-838475 | None:intergenic | 50.0% | |
| !! | GCTAAAGGCATCCATGGACA+CGG | + | chr6_4:838467-838486 | None:intergenic | 50.0% |
| GTGTCCATGGATGCCTTTAG+CGG | - | chr6_4:838466-838485 | Msa0969340:intron | 50.0% | |
| !! | CAAACCGCTAAAGGCATCCA+TGG | + | chr6_4:838473-838492 | None:intergenic | 50.0% |
| CATGGATGCCTTTAGCGGTT+TGG | - | chr6_4:838471-838490 | Msa0969340:intron | 50.0% | |
| CCAGTCTTCCAAACCGCTAA+AGG | + | chr6_4:838482-838501 | None:intergenic | 50.0% | |
| ! | CCTTTAGCGGTTTGGAAGAC+TGG | - | chr6_4:838479-838498 | Msa0969340:intron | 50.0% |
| GACTGGATGTCCCAATCAGA+AGG | - | chr6_4:838496-838515 | Msa0969340:intron | 50.0% | |
| GATGTCCCAATCAGAAGGTG+AGG | - | chr6_4:838501-838520 | Msa0969340:intron | 50.0% | |
| GTCCTCCTCACCTTCTGATT+GGG | + | chr6_4:838509-838528 | None:intergenic | 50.0% | |
| AGTCCTCCTCACCTTCTGAT+TGG | + | chr6_4:838510-838529 | None:intergenic | 50.0% | |
| GGACTCAAGAGGTGGTGATA+AGG | - | chr6_4:838525-838544 | Msa0969340:intron | 50.0% | |
| TGAAGCTTGGGACAGTGACT+AGG | - | chr6_4:838621-838640 | Msa0969340:intron | 50.0% | |
| TCAGAAACCACACACGACTC+TGG | - | chr6_4:838738-838757 | Msa0969340:CDS | 50.0% | |
| TACACTTCCAGAGTCGTGTG+TGG | + | chr6_4:838748-838767 | None:intergenic | 50.0% | |
| GCGTCGGAAGGAGAAGAGAA+GGG | + | chr6_4:833576-833595 | None:intergenic | 55.0% | |
| TGCGTCGGAAGGAGAAGAGA+AGG | + | chr6_4:833577-833596 | None:intergenic | 55.0% | |
| CAGTGAGGATAAGGATGGCG+CGG | + | chr6_4:833639-833658 | None:intergenic | 55.0% | |
| CGTTGACATTCCCCGACACA+AGG | + | chr6_4:834156-834175 | None:intergenic | 55.0% | |
| CGGGGAATGTCAACGATGAG+AGG | - | chr6_4:834161-834180 | Msa0969340:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | chr6_4:835256-835275 | Msa0969340:intron | 55.0% | |
| !! | GCATGGGTTACTGACTCGAC+TGG | + | chr6_4:835492-835511 | None:intergenic | 55.0% |
| TCGGTGGGATGAGATGTGTG+TGG | - | chr6_4:835646-835665 | Msa0969340:CDS | 55.0% | |
| GTGGGATGAGATGTGTGTGG+TGG | - | chr6_4:835649-835668 | Msa0969340:CDS | 55.0% | |
| GGGATGAGATGTGTGTGGTG+GGG | - | chr6_4:835651-835670 | Msa0969340:CDS | 55.0% | |
| GGATGAGATGTGTGTGGTGG+GGG | - | chr6_4:835652-835671 | Msa0969340:CDS | 55.0% | |
| ! | AGATGTGTGTGGTGGGGGAA+GGG | - | chr6_4:835657-835676 | Msa0969340:CDS | 55.0% |
| CGCAGGGCCTCAGATATTTG+GGG | + | chr6_4:835731-835750 | None:intergenic | 55.0% | |
| GCGCAGGGCCTCAGATATTT+GGG | + | chr6_4:835732-835751 | None:intergenic | 55.0% | |
| AGCGCAGGGCCTCAGATATT+TGG | + | chr6_4:835733-835752 | None:intergenic | 55.0% | |
| GAACTTGCCCCATTTCGCAC+AGG | + | chr6_4:836149-836168 | None:intergenic | 55.0% | |
| !! | AAGAGCTCTGGATCATGCCG+TGG | + | chr6_4:836659-836678 | None:intergenic | 55.0% |
| GCGGATGGGAGTAAATCCTG+AGG | - | chr6_4:837583-837602 | Msa0969340:intron | 55.0% | |
| GCCATTGCAGTTGGATCCTC+AGG | + | chr6_4:837602-837621 | None:intergenic | 55.0% | |
| TGGATGCTGGCCATTGCAGT+TGG | + | chr6_4:837611-837630 | None:intergenic | 55.0% | |
| GGAAGCCACTCTTTGGATGC+TGG | + | chr6_4:837624-837643 | None:intergenic | 55.0% | |
| CTATCGGCAGTCCGATGCTT+GGG | + | chr6_4:837968-837987 | None:intergenic | 55.0% | |
| ACTATCGGCAGTCCGATGCT+TGG | + | chr6_4:837969-837988 | None:intergenic | 55.0% | |
| GACGATGGTGAGTGGCATCA+TGG | - | chr6_4:838034-838053 | Msa0969340:intron | 55.0% | |
| AGCAGCAGCAGCGATGATGA+GGG | - | chr6_4:838352-838371 | Msa0969340:CDS | 55.0% | |
| AGTTTGAGAGGCAGGGAAGC+AGG | - | chr6_4:838424-838443 | Msa0969340:CDS | 55.0% | |
| CCGCACTAAATCCGTGTCCA+TGG | - | chr6_4:838453-838472 | Msa0969340:intron | 55.0% | |
| GTCCCAATCAGAAGGTGAGG+AGG | - | chr6_4:838504-838523 | Msa0969340:intron | 55.0% | |
| GAAGGTGAGGAGGACTCAAG+AGG | - | chr6_4:838514-838533 | Msa0969340:intron | 55.0% | |
| ! | AGTGGCGGAGCAAAGTGCGT+CGG | + | chr6_4:833592-833611 | None:intergenic | 60.0% |
| ! | GCGGAGGGAGTTGATTACGG+AGG | + | chr6_4:833617-833636 | None:intergenic | 60.0% |
| ! | GCGGCGGAGGGAGTTGATTA+CGG | + | chr6_4:833620-833639 | None:intergenic | 60.0% |
| TGAGGATAAGGATGGCGCGG+CGG | + | chr6_4:833636-833655 | None:intergenic | 60.0% | |
| GGCGGCAGTGAGGATAAGGA+TGG | + | chr6_4:833644-833663 | None:intergenic | 60.0% | |
| GGAGGAAAATGGCGGCAGTG+AGG | + | chr6_4:833654-833673 | None:intergenic | 60.0% | |
| ! | GAGATGTGTGTGGTGGGGGA+AGG | - | chr6_4:835656-835675 | Msa0969340:CDS | 60.0% |
| GTAGGCTGAGCTACAGCGCA+GGG | + | chr6_4:835747-835766 | None:intergenic | 60.0% | |
| TGTAGGCTGAGCTACAGCGC+AGG | + | chr6_4:835748-835767 | None:intergenic | 60.0% | |
| CGCTGTAGCTCAGCCTACAC+AGG | - | chr6_4:835749-835768 | Msa0969340:CDS | 60.0% | |
| AGCTCAGCCTACACAGGCAC+AGG | - | chr6_4:835755-835774 | Msa0969340:CDS | 60.0% | |
| GCTCAGCCTACACAGGCACA+GGG | - | chr6_4:835756-835775 | Msa0969340:CDS | 60.0% | |
| ! | ATTGAGAAGCACGGTGGGGC+CGG | + | chr6_4:835782-835801 | None:intergenic | 60.0% |
| TCTGGATCATGCCGTGGTGG+AGG | + | chr6_4:836653-836672 | None:intergenic | 60.0% | |
| !! | AGCTCTGGATCATGCCGTGG+TGG | + | chr6_4:836656-836675 | None:intergenic | 60.0% |
| GATTTACTCCCATCCGCCGC+AGG | + | chr6_4:837580-837599 | None:intergenic | 60.0% | |
| ACGACGACGACGATGGTGAG+TGG | - | chr6_4:838026-838045 | Msa0969340:intron | 60.0% | |
| GAGCAGCAGCAGCGATGATG+AGG | - | chr6_4:838351-838370 | Msa0969340:CDS | 60.0% | |
| GGTGAGGAGGACTCAAGAGG+TGG | - | chr6_4:838517-838536 | Msa0969340:intron | 60.0% | |
| GCGGAGCAAAGTGCGTCGGA+AGG | + | chr6_4:833588-833607 | None:intergenic | 65.0% | |
| GATAAGGATGGCGCGGCGGA+GGG | + | chr6_4:833632-833651 | None:intergenic | 65.0% | |
| AGCCTACACAGGCACAGGGC+CGG | - | chr6_4:835760-835779 | Msa0969340:CDS | 65.0% | |
| TACCGGAGCTGCCTCCACCA+CGG | - | chr6_4:836639-836658 | Msa0969340:intron | 65.0% | |
| AGAACAGGACCTGCGGCGGA+TGG | - | chr6_4:837568-837587 | Msa0969340:intron | 65.0% | |
| GAACAGGACCTGCGGCGGAT+GGG | - | chr6_4:837569-837588 | Msa0969340:intron | 65.0% | |
| GACGACGACGACGACGACGA+TGG | - | chr6_4:838019-838038 | Msa0969340:intron | 65.0% | |
| GGATAAGGATGGCGCGGCGG+AGG | + | chr6_4:833633-833652 | None:intergenic | 70.0% | |
| ! | TGCCGTGGTGGAGGCAGCTC+CGG | + | chr6_4:836644-836663 | None:intergenic | 70.0% |
| GGCCGGCCCTGTGCCTGTGT+AGG | + | chr6_4:835765-835784 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 833553 | 838928 | 833553 | ID=Msa0969340;Name=Msa0969340 |
| chr6_4 | mRNA | 833553 | 838928 | 833553 | ID=Msa0969340-mRNA-1;Parent=Msa0969340;Name=Msa0969340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=171|1|1|1|1|1|4|286|634 |
| chr6_4 | exon | 833553 | 834975 | 833553 | ID=Msa0969340-mRNA-1:exon:407;Parent=Msa0969340-mRNA-1 |
| chr6_4 | exon | 835490 | 835891 | 835490 | ID=Msa0969340-mRNA-1:exon:406;Parent=Msa0969340-mRNA-1 |
| chr6_4 | exon | 838162 | 838444 | 838162 | ID=Msa0969340-mRNA-1:exon:405;Parent=Msa0969340-mRNA-1 |
| chr6_4 | exon | 838675 | 838928 | 838675 | ID=Msa0969340-mRNA-1:exon:404;Parent=Msa0969340-mRNA-1 |
| chr6_4 | five_prime_UTR | 838758 | 838928 | 838758 | ID=Msa0969340-mRNA-1:five_prime_utr;Parent=Msa0969340-mRNA-1 |
| chr6_4 | CDS | 838675 | 838757 | 838675 | ID=Msa0969340-mRNA-1:cds;Parent=Msa0969340-mRNA-1 |
| chr6_4 | CDS | 838162 | 838444 | 838162 | ID=Msa0969340-mRNA-1:cds;Parent=Msa0969340-mRNA-1 |
| chr6_4 | CDS | 835490 | 835891 | 835490 | ID=Msa0969340-mRNA-1:cds;Parent=Msa0969340-mRNA-1 |
| chr6_4 | CDS | 833839 | 834975 | 833839 | ID=Msa0969340-mRNA-1:cds;Parent=Msa0969340-mRNA-1 |
| chr6_4 | three_prime_UTR | 833553 | 833838 | 833553 | ID=Msa0969340-mRNA-1:three_prime_utr;Parent=Msa0969340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
