AlfalfaGEDB | Msa0969790

M. sativa cultivar zhongmu-4 / Msa0969790

KEGG: -
GO: GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969790	XP_013450735.1	91.824	636	36	4	1	625	1	631	0.0	1092

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969790	sp\|Q9LT57\|CFM9_ARATH	77.879	330	60	3	61	377	1	330	1.49e-150	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969790	A0A072U6I9	91.824	636	36	4	1	625	1	631	0.0	1092

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0123360	Msa0969790	0.810314	1.225707e-50	-8.615850e-47
Msa0292030	Msa0969790	0.801891	7.268728e-49	-8.615850e-47
Msa0388700	Msa0969790	0.822011	2.975490e-53	-8.615850e-47
Msa0473990	Msa0969790	0.805706	1.172834e-49	-8.615850e-47
Msa0474010	Msa0969790	0.804055	2.595617e-49	-8.615850e-47
Msa0660490	Msa0969790	0.803512	3.365725e-49	-8.615850e-47
Msa0689260	Msa0969790	0.830979	2.164241e-55	-8.615850e-47
Msa0711780	Msa0969790	0.805871	1.083053e-49	-8.615850e-47
Msa0790660	Msa0969790	-0.805895	1.070255e-49	-8.615850e-47
Msa0969340	Msa0969790	0.883415	4.573402e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969790	MtrunA17_Chr6g0449261	91.824	636	36	4	1	625	1	631	0.0	1092
Msa0969790	MtrunA17_Chr4g0067911	49.112	169	78	1	113	273	161	329	3.24e-42	155
Msa0969790	MtrunA17_Chr1g0171521	50.327	153	66	2	110	252	116	268	1.93e-38	143
Msa0969790	MtrunA17_Chr4g0033621	44.379	169	86	1	113	273	134	302	5.76e-37	143
Msa0969790	MtrunA17_Chr8g0391361	47.917	144	67	1	113	248	7	150	4.84e-34	127
Msa0969790	MtrunA17_Chr1g0187011	31.280	211	123	5	77	276	566	765	1.82e-21	99.4
Msa0969790	MtrunA17_Chr6g0484411	33.175	211	119	6	77	276	557	756	3.60e-21	98.6
Msa0969790	MtrunA17_Chr6g0451621	35.593	177	98	5	114	276	518	692	3.91e-18	89.0
Msa0969790	MtrunA17_Chr2g0330811	36.719	128	65	3	148	264	593	715	2.70e-16	82.8
Msa0969790	MtrunA17_Chr4g0071101	28.293	205	132	4	89	282	531	731	2.15e-15	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969790	AT3G27550.2	69.975	393	95	8	1	377	1	386	1.04e-152	451
Msa0969790	AT3G27550.3	77.879	330	60	3	61	377	1	330	1.52e-151	446
Msa0969790	AT3G27550.1	77.879	330	60	3	61	377	1	330	1.52e-151	446
Msa0969790	AT3G25440.2	44.898	196	98	2	96	281	57	252	1.53e-43	160
Msa0969790	AT3G25440.1	44.898	196	98	2	96	281	121	316	8.58e-43	160
Msa0969790	AT2G28480.1	45.143	175	88	1	107	273	119	293	5.73e-39	147
Msa0969790	AT3G25440.4	46.584	161	76	2	131	281	1	161	2.79e-38	143
Msa0969790	AT3G25440.3	46.584	161	76	2	131	281	1	161	2.79e-38	143
Msa0969790	AT3G25440.5	46.584	161	76	2	131	281	1	161	2.79e-38	143
Msa0969790	AT4G13070.1	48.408	157	72	1	113	260	143	299	1.65e-37	143

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Find 197 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATCATCATGTTCCG+TGG	0.652160	6_4:-1211934	Msa0969790:CDS
AAAACTATTACGATATTGAG+CGG	0.607700	6_4:+1210431	None:intergenic
AAACATAAAGAAAATAGAAC+AGG	0.489664	6_4:-1211264	Msa0969790:CDS
AAACTGAAAAGGGAGGAAAA+TGG	0.471915	6_4:+1214905	None:intergenic
AAAGAGTATGCGAAGCAAGG+TGG	0.683453	6_4:-1214377	Msa0969790:CDS
AAAGGAAGCTGATGAAGCTT+GGG	0.481393	6_4:-1210211	Msa0969790:CDS
AAATAGAACAGGACCTGCGG+CGG	0.657187	6_4:-1211253	Msa0969790:CDS
AAATGATGACTATGATGGTG+AGG	0.683700	6_4:-1210907	Msa0969790:CDS
AAATGGCGGCAGTGAGGATG+AGG	0.522703	6_4:+1214922	None:intergenic
AACAAGAATTATGTTCCAGT+TGG	0.532863	6_4:-1212123	Msa0969790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCATTCTTCAAACTGAAAA+GGG	+	chr6_4:1209398-1209417	None:intergenic	30.0%
ACTCATTCTTCAAACTGAAA+AGG	+	chr6_4:1209399-1209418	None:intergenic	30.0%
AGTTGAAAGAGAGATGAAAT+GGG	+	chr6_4:1209492-1209511	None:intergenic	30.0%
AAGTTGAAAGAGAGATGAAA+TGG	+	chr6_4:1209493-1209512	None:intergenic	30.0%
GATCCATTCAAAAGATTCAA+CGG	+	chr6_4:1209863-1209882	None:intergenic	30.0%
AAGAGTCTGGTAAAACATTA+AGG	-	chr6_4:1209951-1209970	Msa0969790:three_prime_UTR	30.0%
AGAGTCTGGTAAAACATTAA+GGG	-	chr6_4:1209952-1209971	Msa0969790:three_prime_UTR	30.0%
CAACATCTCAAAGCAATATA+TGG	+	chr6_4:1210122-1210141	None:intergenic	30.0%
AAAGCCTTCTTAAACACTTT+AGG	-	chr6_4:1210225-1210244	Msa0969790:CDS	30.0%
CCAATTGTTAAGATTAGAAC+AGG	+	chr6_4:1210253-1210272	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	1209276	1215036	1209276	ID=Msa0969790;Name=Msa0969790
chr6_4	mRNA	1209276	1215036	1209276	ID=Msa0969790-mRNA-1;Parent=Msa0969790;Name=Msa0969790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171\|0.8\|0.66\|1\|0.4\|0.16\|6\|378\|625
chr6_4	exon	1209276	1209366	1209276	ID=Msa0969790-mRNA-1:exon:683;Parent=Msa0969790-mRNA-1
chr6_4	exon	1209913	1211333	1209913	ID=Msa0969790-mRNA-1:exon:682;Parent=Msa0969790-mRNA-1
chr6_4	exon	1211876	1212028	1211876	ID=Msa0969790-mRNA-1:exon:681;Parent=Msa0969790-mRNA-1
chr6_4	exon	1212053	1212277	1212053	ID=Msa0969790-mRNA-1:exon:680;Parent=Msa0969790-mRNA-1
chr6_4	exon	1214264	1214546	1214264	ID=Msa0969790-mRNA-1:exon:679;Parent=Msa0969790-mRNA-1
chr6_4	exon	1214783	1215036	1214783	ID=Msa0969790-mRNA-1:exon:678;Parent=Msa0969790-mRNA-1
chr6_4	five_prime_UTR	1214866	1215036	1214866	ID=Msa0969790-mRNA-1:five_prime_utr;Parent=Msa0969790-mRNA-1
chr6_4	CDS	1214783	1214865	1214783	ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1
chr6_4	CDS	1214264	1214546	1214264	ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1
chr6_4	CDS	1212053	1212277	1212053	ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1
chr6_4	CDS	1211876	1212028	1211876	ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1
chr6_4	CDS	1210200	1211333	1210200	ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1
chr6_4	three_prime_UTR	1209913	1210199	1209913	ID=Msa0969790-mRNA-1:three_prime_utr;Parent=Msa0969790-mRNA-1
chr6_4	three_prime_UTR	1209276	1209366	1209276	ID=Msa0969790-mRNA-1:three_prime_utr;Parent=Msa0969790-mRNA-1

Gene Sequence

>Msa0969790

ATGTTCAGTGTTCGAAATCTTCATAAACATTACTCCCTCAAACCCATTTCATCTCTCTTTCAACTTCAATCCAATCTCTTCAGAAATGTTGTGCCTTTAGGACAAGGAATAGAGCAAAGTAAAACTGATGATAAAGTTGAAGCGTACCATAACGATAGCTTTTATTGTTATGTTAAACCGTTGAATCTTTTGAATGGATCCTTGTGTCGGGGAATGTCAACGATGAGAGGAAAGAGTATGCGAAGCAAGGTGGAAAGAAGAATGCAGAAAGAGTCTGGTAAAACATTAAGGGAAATTCGAAAAGCTAAAAAAATTACGAAGAAACTTATGACTGACGAGGAGCGGCTTGTTTACAATCTCAAAAGAGCAAAGAAGAAAATTGCATTGCTACTACAAAAGCTTAAGAAATATGAGCTACCGGAGCTGCCTCCACCACGGCATGATCCAGAGCTCTTTACACCCGAACAGCTTCAGGCGTATAAAAAAATTGGATTCAAGAACAAGAATTATGTTCCAGTTGGTGTTCGTGGAGTATTTGGAGGAGTTGTGCAAAATATGCATCTCCATTGGAAGTTTCATGAGACTGTGCAAGAAAGAATTAAAGAAATGGCTTCAATGCTTGCAAGACTGAGTGGTGGGATCGTGTTAAACGTTCATAATGTGAAAACAATCATCATGTTCCGTGGTAGAAATTACCGCCAACCCAAAAATTTGATACCTATTAATACCCTTACAAAGAGGAAGGCCCTATTCAAGGCCAGATTTGAGCAAGCTCTTGAATCTCAAAAGTTAAACATAAAGAAAATAGAACAGGACCTGCGGCGGATGGGAGTAAATCCTGAGGATCCAACTGCAATGGCCAGCATCCAAAGAGTGGCTTCCACTTTCTTCAATGCCATTGACAAGAAAGATGGAAGTCCTTATGTTAACCGTGGAGACAAGCCGTCAGTAATAGAACCTAATGATGGTTTGGAGGAATCAGATCCTGCTGAACAGGAAGAGCTAGATCGGTTCATCGCTGATATAGAGGATGCCGCCGATAAAGAATATGAAGCTGAAGAGGCCAAAGAAAAGGAAGAGTTTGGAAGACTTAGATATTGGAACAGAGAAGAGTATGGTGGAAGATTCAGAAGATTGAACGATTCTAGAAATGATGACTATGATGGTGAGGTTAGAGGCTCAAGAGTTCGGCAGAATATACATCCCAAGCATCGGACTGCCGATAGCGACGATGAAGAGAATGCTTATTCTAACAATGACGACGACGACGACGACGATGAGTGGCATCATGGTAATATTGCCGATGACAGTGATGTTGACAGCAATTTTGATGGCTCTGATGAAGCTAGAGGTAGGTTCAAGGAAAGTAGGGGGAGAAGAGAGAGGATAAATAATACAAGTATTGGCAATGGTCAAGTTAATGGTGGTCAGAGCAGACACGGTGAAGCTAAATTTAGGACGAATATGGGTGTACAAGATTTTGAATCAGAAGATATACTTAGCGAAGTTGAAAATGCAATGTGGGAGTCGGATTTGGAGGACAATGACTCGGTACATTTGAGAGGAGTCAATAGCAGTAACTATAAGAGCAGCAGCAGCGATGATGAGGGTCAGATTGATGATTCCGCTCAATATCGTAATAGTTTTAATGCACCAAAGAGTTTGAGAGGCAGGGAAGCAGGAATTATCCGCACTAAATCCGTGTCCATGGATGCCTTTAGCGGTTTGGAAGACTGGATGTCCCAATCAGAAGGTGAGGAGGACTCAAGAGGTGGTGATAAGGACTACCCTACAAGTCAAAATAGTAAGGTGGTCAAAAGTGATATCCATAAGAAGAGATCACCAAAGGAAGCTGATGAAGCTTGGGACAGTGACTAG

Protein sequence

>Msa0969790

MFSVRNLHKHYSLKPISSLFQLQSNLFRNVVPLGQGIEQSKTDDKVEAYHNDSFYCYVKPLNLLNGSLCRGMSTMRGKSMRSKVERRMQKESGKTLREIRKAKKITKKLMTDEERLVYNLKRAKKKIALLLQKLKKYELPELPPPRHDPELFTPEQLQAYKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQERIKEMASMLARLSGGIVLNVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQDLRRMGVNPEDPTAMASIQRVASTFFNAIDKKDGSPYVNRGDKPSVIEPNDGLEESDPAEQEELDRFIADIEDAADKEYEAEEAKEKEEFGRLRYWNREEYGGRFRRLNDSRNDDYDGEVRGSRVRQNIHPKHRTADSDDEENAYSNNDDDDDDDEWHHGNIADDSDVDSNFDGSDEARGRFKESRGRRERINNTSIGNGQVNGGQSRHGEAKFRTNMGVQDFESEDILSEVENAMWESDLEDNDSVHLRGVNSSNYKSSSSDDEGQIDDSAQYRNSFNAPKSLRGREAGIIRTKSVSMDAFSGLEDWMSQSEGEEDSRGGDKDYPTSQNSKVVKSDIHKKRSPKEADEAWDSD*