Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969790 | XP_013450735.1 | 91.824 | 636 | 36 | 4 | 1 | 625 | 1 | 631 | 0.0 | 1092 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969790 | sp|Q9LT57|CFM9_ARATH | 77.879 | 330 | 60 | 3 | 61 | 377 | 1 | 330 | 1.49e-150 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969790 | A0A072U6I9 | 91.824 | 636 | 36 | 4 | 1 | 625 | 1 | 631 | 0.0 | 1092 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660490 | Msa0969790 | 0.803512 | 3.365725e-49 | -8.615850e-47 |
| Msa0689260 | Msa0969790 | 0.830979 | 2.164241e-55 | -8.615850e-47 |
| Msa0711780 | Msa0969790 | 0.805871 | 1.083053e-49 | -8.615850e-47 |
| Msa0790660 | Msa0969790 | -0.805895 | 1.070255e-49 | -8.615850e-47 |
| Msa0123360 | Msa0969790 | 0.810314 | 1.225707e-50 | -8.615850e-47 |
| Msa0388700 | Msa0969790 | 0.822011 | 2.975490e-53 | -8.615850e-47 |
| Msa0473990 | Msa0969790 | 0.805706 | 1.172834e-49 | -8.615850e-47 |
| Msa0474010 | Msa0969790 | 0.804055 | 2.595617e-49 | -8.615850e-47 |
| Msa0292030 | Msa0969790 | 0.801891 | 7.268728e-49 | -8.615850e-47 |
| Msa0969340 | Msa0969790 | 0.883415 | 4.573402e-71 | -8.615850e-47 |
| Msa0969790 | Msa0987370 | 0.815189 | 1.050281e-51 | -8.615850e-47 |
| Msa0969790 | Msa0989540 | 0.806835 | 6.783146e-50 | -8.615850e-47 |
| Msa0969790 | Msa1051200 | 0.823650 | 1.235764e-53 | -8.615850e-47 |
| Msa0969790 | Msa1097920 | 0.812716 | 3.685474e-51 | -8.615850e-47 |
| Msa0969790 | Msa1137700 | 0.812035 | 5.191605e-51 | -8.615850e-47 |
| Msa0969790 | Msa1160590 | 0.818136 | 2.294009e-52 | -8.615850e-47 |
| Msa0969790 | Msa1358250 | 0.832482 | 9.216969e-56 | -8.615850e-47 |
| Msa0969790 | Msa1392780 | 0.841622 | 4.249356e-58 | -8.615850e-47 |
| Msa0969790 | Msa1419870 | 0.810739 | 9.921303e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969790 | MtrunA17_Chr6g0449261 | 91.824 | 636 | 36 | 4 | 1 | 625 | 1 | 631 | 0.0 | 1092 |
| Msa0969790 | MtrunA17_Chr4g0067911 | 49.112 | 169 | 78 | 1 | 113 | 273 | 161 | 329 | 3.24e-42 | 155 |
| Msa0969790 | MtrunA17_Chr1g0171521 | 50.327 | 153 | 66 | 2 | 110 | 252 | 116 | 268 | 1.93e-38 | 143 |
| Msa0969790 | MtrunA17_Chr4g0033621 | 44.379 | 169 | 86 | 1 | 113 | 273 | 134 | 302 | 5.76e-37 | 143 |
| Msa0969790 | MtrunA17_Chr8g0391361 | 47.917 | 144 | 67 | 1 | 113 | 248 | 7 | 150 | 4.84e-34 | 127 |
| Msa0969790 | MtrunA17_Chr1g0187011 | 31.280 | 211 | 123 | 5 | 77 | 276 | 566 | 765 | 1.82e-21 | 99.4 |
| Msa0969790 | MtrunA17_Chr6g0484411 | 33.175 | 211 | 119 | 6 | 77 | 276 | 557 | 756 | 3.60e-21 | 98.6 |
| Msa0969790 | MtrunA17_Chr6g0451621 | 35.593 | 177 | 98 | 5 | 114 | 276 | 518 | 692 | 3.91e-18 | 89.0 |
| Msa0969790 | MtrunA17_Chr2g0330811 | 36.719 | 128 | 65 | 3 | 148 | 264 | 593 | 715 | 2.70e-16 | 82.8 |
| Msa0969790 | MtrunA17_Chr4g0071101 | 28.293 | 205 | 132 | 4 | 89 | 282 | 531 | 731 | 2.15e-15 | 79.7 |
| Msa0969790 | MtrunA17_Chr8g0391141 | 31.016 | 187 | 111 | 5 | 75 | 250 | 413 | 592 | 3.17e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969790 | AT3G27550.2 | 69.975 | 393 | 95 | 8 | 1 | 377 | 1 | 386 | 1.04e-152 | 451 |
| Msa0969790 | AT3G27550.3 | 77.879 | 330 | 60 | 3 | 61 | 377 | 1 | 330 | 1.52e-151 | 446 |
| Msa0969790 | AT3G27550.1 | 77.879 | 330 | 60 | 3 | 61 | 377 | 1 | 330 | 1.52e-151 | 446 |
| Msa0969790 | AT3G25440.2 | 44.898 | 196 | 98 | 2 | 96 | 281 | 57 | 252 | 1.53e-43 | 160 |
| Msa0969790 | AT3G25440.1 | 44.898 | 196 | 98 | 2 | 96 | 281 | 121 | 316 | 8.58e-43 | 160 |
| Msa0969790 | AT2G28480.1 | 45.143 | 175 | 88 | 1 | 107 | 273 | 119 | 293 | 5.73e-39 | 147 |
| Msa0969790 | AT3G25440.4 | 46.584 | 161 | 76 | 2 | 131 | 281 | 1 | 161 | 2.79e-38 | 143 |
| Msa0969790 | AT3G25440.3 | 46.584 | 161 | 76 | 2 | 131 | 281 | 1 | 161 | 2.79e-38 | 143 |
| Msa0969790 | AT3G25440.5 | 46.584 | 161 | 76 | 2 | 131 | 281 | 1 | 161 | 2.79e-38 | 143 |
| Msa0969790 | AT4G13070.1 | 48.408 | 157 | 72 | 1 | 113 | 260 | 143 | 299 | 1.65e-37 | 143 |
| Msa0969790 | AT3G18390.1 | 35.638 | 188 | 100 | 5 | 100 | 276 | 611 | 788 | 3.12e-24 | 108 |
| Msa0969790 | AT3G23070.1 | 36.000 | 175 | 91 | 4 | 90 | 253 | 586 | 750 | 3.21e-21 | 99.0 |
| Msa0969790 | AT4G14510.1 | 32.812 | 192 | 108 | 4 | 90 | 270 | 613 | 794 | 1.39e-20 | 97.1 |
| Msa0969790 | AT4G29750.1 | 32.065 | 184 | 105 | 4 | 113 | 282 | 611 | 788 | 3.06e-19 | 92.8 |
| Msa0969790 | AT4G29750.2 | 32.065 | 184 | 105 | 4 | 113 | 282 | 611 | 788 | 5.04e-19 | 92.0 |
| Msa0969790 | AT3G01370.1 | 36.429 | 140 | 78 | 2 | 148 | 276 | 575 | 714 | 4.99e-18 | 89.0 |
| Msa0969790 | AT5G16180.1 | 32.308 | 195 | 109 | 7 | 111 | 282 | 523 | 717 | 4.10e-15 | 79.3 |
Find 197 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCAATTATCACAAAAT+TGG | 0.201684 | 6_4:+1209334 | None:intergenic |
| CCTTTGGTGATCTCTTCTTA+TGG | 0.210452 | 6_4:+1210229 | None:intergenic |
| GTTGGTGTTCGTGGAGTATT+TGG | 0.242614 | 6_4:-1212105 | Msa0969790:CDS |
| AAGAGTCTGGTAAAACATTA+AGG | 0.251609 | 6_4:-1214339 | Msa0969790:CDS |
| TTGTTCAGATGTGTACTTTA+GGG | 0.259867 | 6_4:-1210035 | Msa0969790:three_prime_UTR |
| TTCAGCTTCATATTCTTTAT+CGG | 0.273368 | 6_4:+1211019 | None:intergenic |
| TGCAATGTGGGAGTCGGATT+TGG | 0.290486 | 6_4:-1210541 | Msa0969790:CDS |
| TCCCTGCCTCTCAAACTCTT+TGG | 0.295275 | 6_4:+1210402 | None:intergenic |
| TTTGTTCAGATGTGTACTTT+AGG | 0.300577 | 6_4:-1210036 | Msa0969790:three_prime_UTR |
| CTCTTTGTAAGGGTATTAAT+AGG | 0.314891 | 6_4:+1211880 | None:intergenic |
| CAAGCTTCATCAGCTTCCTT+TGG | 0.315883 | 6_4:+1210213 | None:intergenic |
| AGTTTGGAAGACTTAGATAT+TGG | 0.318025 | 6_4:-1210977 | Msa0969790:CDS |
| ATTGGCAATGGTCAAGTTAA+TGG | 0.324195 | 6_4:-1210654 | Msa0969790:CDS |
| AGCTAAATTTAGGACGAATA+TGG | 0.330496 | 6_4:-1210610 | Msa0969790:CDS |
| AGTCCTCCTCACCTTCTGAT+TGG | 0.334499 | 6_4:+1210313 | None:intergenic |
| TTCAGAAATGTTGTGCCTTT+AGG | 0.335105 | 6_4:-1214529 | Msa0969790:intron |
| TTCAAGAGCTTGCTCAAATC+TGG | 0.345605 | 6_4:+1211298 | None:intergenic |
| ATCTTACCTTCCTCTTTGTA+AGG | 0.348042 | 6_4:+1211869 | None:intergenic |
| CTTTACACCCGAACAGCTTC+AGG | 0.349585 | 6_4:-1212169 | Msa0969790:CDS |
| CCTTTAGCGGTTTGGAAGAC+TGG | 0.351247 | 6_4:-1210341 | Msa0969790:CDS |
| CTCAAATCTGGCCTTGAATA+GGG | 0.356118 | 6_4:+1211310 | None:intergenic |
| ATAATTGAATTCCAATGTTA+TGG | 0.359931 | 6_4:-1209323 | Msa0969790:three_prime_UTR |
| TGCTCTATTCCTTGTCCTAA+AGG | 0.362024 | 6_4:+1214514 | None:intergenic |
| TTTATACGCCTGAAGCTGTT+CGG | 0.362329 | 6_4:+1212161 | None:intergenic |
| GCTCAAATCTGGCCTTGAAT+AGG | 0.363277 | 6_4:+1211309 | None:intergenic |
| CATGGATGCCTTTAGCGGTT+TGG | 0.367845 | 6_4:-1210349 | Msa0969790:CDS |
| AAGTTGAAAGAGAGATGAAA+TGG | 0.367950 | 6_4:+1214800 | None:intergenic |
| TTATACGCCTGAAGCTGTTC+GGG | 0.370216 | 6_4:+1212162 | None:intergenic |
| AACTTCAATCCAATCTCTTC+AGG | 0.372514 | 6_4:-1214782 | Msa0969790:intron |
| AGAAAGTGGAAGCCACTCTT+TGG | 0.372764 | 6_4:+1211189 | None:intergenic |
| GATTCCTCCAAACCATCATT+AGG | 0.373992 | 6_4:+1211098 | None:intergenic |
| ACTCATTCTTCAAACTGAAA+AGG | 0.379691 | 6_4:+1214894 | None:intergenic |
| GTCCTCCTCACCTTCTGATT+GGG | 0.380053 | 6_4:+1210314 | None:intergenic |
| GCCATTGCAGTTGGATCCTC+AGG | 0.380404 | 6_4:+1211218 | None:intergenic |
| ACTTCCATCTTTCTTGTCAA+TGG | 0.383828 | 6_4:+1211160 | None:intergenic |
| GCCAAAGAAAAGGAAGAGTT+TGG | 0.388346 | 6_4:-1210993 | Msa0969790:CDS |
| GGAATCAGATCCTGCTGAAC+AGG | 0.388918 | 6_4:-1211081 | Msa0969790:CDS |
| TGTGTACACCGAAGTTATTT+AGG | 0.399084 | 6_4:-1209985 | Msa0969790:three_prime_UTR |
| GGAGAAGAGAAGGGTTTCAA+GGG | 0.401105 | 6_4:+1215003 | None:intergenic |
| AAGGGTTTACCTGAAGAGAT+TGG | 0.402994 | 6_4:+1214773 | None:intergenic |
| CTCATTCTTCAAACTGAAAA+GGG | 0.414892 | 6_4:+1214895 | None:intergenic |
| GACACGGTGAAGCTAAATTT+AGG | 0.418116 | 6_4:-1210620 | Msa0969790:CDS |
| AATAGAACCTAATGATGGTT+TGG | 0.420274 | 6_4:-1211105 | Msa0969790:CDS |
| AATACTCCACGAACACCAAC+TGG | 0.421248 | 6_4:+1212108 | None:intergenic |
| TATGTTCCAGTTGGTGTTCG+TGG | 0.423683 | 6_4:-1212114 | Msa0969790:CDS |
| GAGAGATGAAATGGGTTTGA+GGG | 0.425769 | 6_4:+1214809 | None:intergenic |
| AGAGAGATGAAATGGGTTTG+AGG | 0.426459 | 6_4:+1214808 | None:intergenic |
| CACCAAAGAGTTTGAGAGGC+AGG | 0.427775 | 6_4:-1210404 | Msa0969790:CDS |
| AACCAATCAACAATTTCTTC+AGG | 0.430070 | 6_4:+1209944 | None:intergenic |
| AGTTTGAGAGGCAGGGAAGC+AGG | 0.434357 | 6_4:-1210396 | Msa0969790:CDS |
| GCTAAATTTAGGACGAATAT+GGG | 0.439861 | 6_4:-1210609 | Msa0969790:CDS |
| AACAATAAAAGCTATCGTTA+TGG | 0.440253 | 6_4:+1214461 | None:intergenic |
| TGCCGTGGTGGAGGCAGCTC+CGG | 0.440666 | 6_4:+1212204 | None:intergenic |
| TTTGAATGGATCCTTGTGTC+GGG | 0.442400 | 6_4:-1214419 | Msa0969790:CDS |
| AGAAGAATGCAGAAAGAGTC+TGG | 0.444428 | 6_4:-1214352 | Msa0969790:CDS |
| CAAGGAAAGAATTAAAGAAA+TGG | 0.444685 | 6_4:-1212010 | Msa0969790:intron |
| GGATGAGGATGGCGCGGCGG+AGG | 0.446977 | 6_4:+1214937 | None:intergenic |
| AGGATAAATAATACAAGTAT+TGG | 0.447491 | 6_4:-1210672 | Msa0969790:CDS |
| GAGGTAGGTTCAAGGAAAGT+AGG | 0.447947 | 6_4:-1210707 | Msa0969790:CDS |
| CTATCGGCAGTCCGATGCTT+GGG | 0.449257 | 6_4:+1210852 | None:intergenic |
| CAAAGGAAGCTGATGAAGCT+TGG | 0.453830 | 6_4:-1210212 | Msa0969790:CDS |
| AGGTTAGAGGCTCAAGAGTT+CGG | 0.454485 | 6_4:-1210887 | Msa0969790:CDS |
| TATTGGAACAGAGAAGAGTA+TGG | 0.456496 | 6_4:-1210960 | Msa0969790:CDS |
| AGGAGAAGAGAAGGGTTTCA+AGG | 0.461026 | 6_4:+1215002 | None:intergenic |
| GCGGCGGAGGGAGTTGATTA+CGG | 0.461896 | 6_4:+1214950 | None:intergenic |
| GACTATGATGGTGAGGTTAG+AGG | 0.468968 | 6_4:-1210900 | Msa0969790:CDS |
| AAACTGAAAAGGGAGGAAAA+TGG | 0.471915 | 6_4:+1214905 | None:intergenic |
| AGTTGAAAGAGAGATGAAAT+GGG | 0.472804 | 6_4:+1214801 | None:intergenic |
| TGCCTGAAGAAATTGTTGAT+TGG | 0.477215 | 6_4:-1209946 | Msa0969790:three_prime_UTR |
| TCTGGATCATGCCGTGGTGG+AGG | 0.477830 | 6_4:+1212195 | None:intergenic |
| AAAGGAAGCTGATGAAGCTT+GGG | 0.481393 | 6_4:-1210211 | Msa0969790:CDS |
| TTATATACAGGCCCTATTCA+AGG | 0.481490 | 6_4:-1211321 | Msa0969790:intron |
| GGTGTTCGTGGAGTATTTGG+AGG | 0.482666 | 6_4:-1212102 | Msa0969790:CDS |
| TGGATGCTGGCCATTGCAGT+TGG | 0.483571 | 6_4:+1211209 | None:intergenic |
| ATTCTGGTATAGCATTTACT+TGG | 0.484390 | 6_4:+1210176 | None:intergenic |
| CCAGTCTTCCAAACCGCTAA+AGG | 0.489203 | 6_4:+1210341 | None:intergenic |
| AAACATAAAGAAAATAGAAC+AGG | 0.489664 | 6_4:-1211264 | Msa0969790:CDS |
| AGAGTCTGGTAAAACATTAA+GGG | 0.491117 | 6_4:-1214338 | Msa0969790:CDS |
| CACATATAATTCCATAACAT+TGG | 0.494202 | 6_4:+1209312 | None:intergenic |
| GGAAGCCACTCTTTGGATGC+TGG | 0.495190 | 6_4:+1211196 | None:intergenic |
| AGGTAGGTTCAAGGAAAGTA+GGG | 0.497194 | 6_4:-1210706 | Msa0969790:CDS |
| AGCTGAAGAGGCCAAAGAAA+AGG | 0.499259 | 6_4:-1211003 | Msa0969790:CDS |
| ATTCTCTTCATCGTCGCTAT+CGG | 0.500009 | 6_4:+1210836 | None:intergenic |
| CCCTACAAGTCAAAATAGTA+AGG | 0.500263 | 6_4:-1210268 | Msa0969790:CDS |
| GGACTCAAGAGGTGGTGATA+AGG | 0.500654 | 6_4:-1210295 | Msa0969790:CDS |
| AATGCCATTGACAAGAAAGA+TGG | 0.502487 | 6_4:-1211164 | Msa0969790:CDS |
| GCTATCGGCAGTCCGATGCT+TGG | 0.508858 | 6_4:+1210851 | None:intergenic |
| GATGAGGATGGCGCGGCGGA+GGG | 0.509524 | 6_4:+1214938 | None:intergenic |
| AGAACAGGACCTGCGGCGGA+TGG | 0.509673 | 6_4:-1211249 | Msa0969790:CDS |
| TCAGAAACCACACACGACTC+TGG | 0.510038 | 6_4:-1210082 | Msa0969790:three_prime_UTR |
| GATCCATTCAAAAGATTCAA+CGG | 0.510157 | 6_4:+1214430 | None:intergenic |
| TGTTCGGGTGTAAAGAGCTC+TGG | 0.511414 | 6_4:+1212177 | None:intergenic |
| GAGCAGCAGCAGCGATGATG+AGG | 0.514342 | 6_4:-1210469 | Msa0969790:CDS |
| TCTAGCTCTTCCTGTTCAGC+AGG | 0.518776 | 6_4:+1211071 | None:intergenic |
| TTGTCTCCACGGTTAACATA+AGG | 0.519546 | 6_4:+1211137 | None:intergenic |
| GTGTCCATGGATGCCTTTAG+CGG | 0.520678 | 6_4:-1210354 | Msa0969790:CDS |
| AAATGGCGGCAGTGAGGATG+AGG | 0.522703 | 6_4:+1214922 | None:intergenic |
| AATGTGGGAGTCGGATTTGG+AGG | 0.524703 | 6_4:-1210538 | Msa0969790:CDS |
| CTGAACAGGAAGAGCTAGAT+CGG | 0.526672 | 6_4:-1211067 | Msa0969790:CDS |
| TGCAAAATATGCATCTCCAT+TGG | 0.528015 | 6_4:-1212074 | Msa0969790:CDS |
| GCTTAAGAAATATGAGCTAC+CGG | 0.528659 | 6_4:-1212223 | Msa0969790:CDS |
| TGAAGCTAGAGGTAGGTTCA+AGG | 0.529177 | 6_4:-1210715 | Msa0969790:CDS |
| TGCGTCGGAAGGAGAAGAGA+AGG | 0.530026 | 6_4:+1214993 | None:intergenic |
| GTCAATGGCATTGAAGAAAG+TGG | 0.531512 | 6_4:+1211175 | None:intergenic |
| CCGCACTAAATCCGTGTCCA+TGG | 0.531564 | 6_4:-1210367 | Msa0969790:CDS |
| AACAAGAATTATGTTCCAGT+TGG | 0.532863 | 6_4:-1212123 | Msa0969790:CDS |
| TCTTACCTTCCTCTTTGTAA+GGG | 0.535231 | 6_4:+1211870 | None:intergenic |
| GAACAGGACCTGCGGCGGAT+GGG | 0.538425 | 6_4:-1211248 | Msa0969790:CDS |
| GATTTACTCCCATCCGCCGC+AGG | 0.541197 | 6_4:+1211240 | None:intergenic |
| TTACTGACGGCTTGTCTCCA+CGG | 0.541347 | 6_4:+1211126 | None:intergenic |
| AGAACCTAATGATGGTTTGG+AGG | 0.543260 | 6_4:-1211102 | Msa0969790:CDS |
| CGAAGTTGAAAATGCAATGT+GGG | 0.549326 | 6_4:-1210553 | Msa0969790:CDS |
| CAAACCGCTAAAGGCATCCA+TGG | 0.549768 | 6_4:+1210350 | None:intergenic |
| ACCGAAGTTATTTAGGTGGG+TGG | 0.551390 | 6_4:-1209978 | Msa0969790:three_prime_UTR |
| GAGAAGAGAAGGGTTTCAAG+GGG | 0.552279 | 6_4:+1215004 | None:intergenic |
| TGGTTGAAACAAAATCATCA+AGG | 0.553592 | 6_4:-1209926 | Msa0969790:three_prime_UTR |
| CCCACCCACCTAAATAACTT+CGG | 0.554815 | 6_4:+1209977 | None:intergenic |
| TGAAGCTTGGGACAGTGACT+AGG | 0.557695 | 6_4:-1210199 | Msa0969790:exon |
| GCTGTCAACATCACTGTCAT+CGG | 0.559876 | 6_4:+1210755 | None:intergenic |
| AATGTTGTGCCTTTAGGACA+AGG | 0.561411 | 6_4:-1214523 | Msa0969790:CDS |
| TAAAGAATATGAAGCTGAAG+AGG | 0.562743 | 6_4:-1211015 | Msa0969790:CDS |
| TGGAACAGAGAAGAGTATGG+TGG | 0.564267 | 6_4:-1210957 | Msa0969790:CDS |
| AATGCACCAAAGAGTTTGAG+AGG | 0.565918 | 6_4:-1210408 | Msa0969790:CDS |
| TCATTAGGTTCTATTACTGA+CGG | 0.569181 | 6_4:+1211113 | None:intergenic |
| TCGGTTCATCGCTGATATAG+AGG | 0.570941 | 6_4:-1211048 | Msa0969790:CDS |
| GACGACGATGAGTGGCATCA+TGG | 0.572069 | 6_4:-1210786 | Msa0969790:CDS |
| TGAAAATGCAATGTGGGAGT+CGG | 0.574987 | 6_4:-1210547 | Msa0969790:CDS |
| CGGGGAATGTCAACGATGAG+AGG | 0.581892 | 6_4:-1214400 | Msa0969790:CDS |
| TCAGTAATAGAACCTAATGA+TGG | 0.582255 | 6_4:-1211110 | Msa0969790:CDS |
| TGTTTGACAATCAGAACGGA+TGG | 0.583072 | 6_4:-1210132 | Msa0969790:three_prime_UTR |
| AGCTTCATATTCTTTATCGG+CGG | 0.584618 | 6_4:+1211022 | None:intergenic |
| AACTTATGACTGACGAGGAG+CGG | 0.586837 | 6_4:-1214285 | Msa0969790:CDS |
| ACCAAAGAGTTTGAGAGGCA+GGG | 0.588416 | 6_4:-1210403 | Msa0969790:CDS |
| AATAATACAAGTATTGGCAA+TGG | 0.589479 | 6_4:-1210666 | Msa0969790:CDS |
| TCTAGAAATGATGACTATGA+TGG | 0.589821 | 6_4:-1210912 | Msa0969790:CDS |
| TCCTGAGGATCCAACTGCAA+TGG | 0.592648 | 6_4:-1211219 | Msa0969790:CDS |
| AGGAAAGAGTATGCGAAGCA+AGG | 0.594524 | 6_4:-1214380 | Msa0969790:CDS |
| TACACCGAAGTTATTTAGGT+GGG | 0.595132 | 6_4:-1209981 | Msa0969790:three_prime_UTR |
| CCGAAGTTATTTAGGTGGGT+GGG | 0.595385 | 6_4:-1209977 | Msa0969790:three_prime_UTR |
| GACTGGATGTCCCAATCAGA+AGG | 0.597113 | 6_4:-1210324 | Msa0969790:CDS |
| GGTTGAAACAAAATCATCAA+GGG | 0.600112 | 6_4:-1209925 | Msa0969790:three_prime_UTR |
| CGTTGACATTCCCCGACACA+AGG | 0.600701 | 6_4:+1214408 | None:intergenic |
| AGCAGCAGCAGCGATGATGA+GGG | 0.601546 | 6_4:-1210468 | Msa0969790:CDS |
| TGCTTGCAAGACTGAGTGGT+GGG | 0.602807 | 6_4:-1211981 | Msa0969790:CDS |
| TAATACCCTTACAAAGAGGA+AGG | 0.604277 | 6_4:-1211875 | Msa0969790:intron |
| AGAATATACATCCCAAGCAT+CGG | 0.605468 | 6_4:-1210863 | Msa0969790:CDS |
| AAAACTATTACGATATTGAG+CGG | 0.607700 | 6_4:+1210431 | None:intergenic |
| CAGTCTCATGAAACTTCCAA+TGG | 0.613298 | 6_4:+1212058 | None:intergenic |
| GTAGGTTCAAGGAAAGTAGG+GGG | 0.613514 | 6_4:-1210704 | Msa0969790:CDS |
| TTGAATGGATCCTTGTGTCG+GGG | 0.613828 | 6_4:-1214418 | Msa0969790:CDS |
| GCGGAGCAAAGTGCGTCGGA+AGG | 0.617172 | 6_4:+1214982 | None:intergenic |
| AATGACTCGGTACATTTGAG+AGG | 0.617243 | 6_4:-1210513 | Msa0969790:CDS |
| AGCTCTGGATCATGCCGTGG+TGG | 0.620706 | 6_4:+1212192 | None:intergenic |
| ACTTTGTTTGACAATCAGAA+CGG | 0.621423 | 6_4:-1210136 | Msa0969790:three_prime_UTR |
| GATGGCTCTGATGAAGCTAG+AGG | 0.623735 | 6_4:-1210726 | Msa0969790:CDS |
| GTTGGCGGTAATTTCTACCA+CGG | 0.628009 | 6_4:+1211917 | None:intergenic |
| GATGTCCCAATCAGAAGGTG+AGG | 0.630183 | 6_4:-1210319 | Msa0969790:CDS |
| GTCCCAATCAGAAGGTGAGG+AGG | 0.630743 | 6_4:-1210316 | Msa0969790:CDS |
| CCATAAGAAGAGATCACCAA+AGG | 0.633775 | 6_4:-1210229 | Msa0969790:CDS |
| GGCGGCAGTGAGGATGAGGA+TGG | 0.634747 | 6_4:+1214926 | None:intergenic |
| CAGTGAGGATGAGGATGGCG+CGG | 0.636459 | 6_4:+1214931 | None:intergenic |
| GTACACCGAAGTTATTTAGG+TGG | 0.638591 | 6_4:-1209982 | Msa0969790:three_prime_UTR |
| GCGTCGGAAGGAGAAGAGAA+GGG | 0.639599 | 6_4:+1214994 | None:intergenic |
| GAAGGTGAGGAGGACTCAAG+AGG | 0.641359 | 6_4:-1210306 | Msa0969790:CDS |
| AATGGCCAGCATCCAAAGAG+TGG | 0.641691 | 6_4:-1211201 | Msa0969790:CDS |
| TCAATGCTTGCAAGACTGAG+TGG | 0.642842 | 6_4:-1211985 | Msa0969790:CDS |
| GGTAGGTTCAAGGAAAGTAG+GGG | 0.644041 | 6_4:-1210705 | Msa0969790:CDS |
| TACAAGTCAAAATAGTAAGG+TGG | 0.645026 | 6_4:-1210265 | Msa0969790:CDS |
| ATTCTTCAAACTGAAAAGGG+AGG | 0.647075 | 6_4:+1214898 | None:intergenic |
| TACACTTCCAGAGTCGTGTG+TGG | 0.647458 | 6_4:+1210075 | None:intergenic |
| AATGGTGGTCAGAGCAGACA+CGG | 0.648459 | 6_4:-1210636 | Msa0969790:CDS |
| GGTGAGGAGGACTCAAGAGG+TGG | 0.651623 | 6_4:-1210303 | Msa0969790:CDS |
| AAAACAATCATCATGTTCCG+TGG | 0.652160 | 6_4:-1211934 | Msa0969790:CDS |
| GGCAATGGTCAAGTTAATGG+TGG | 0.652521 | 6_4:-1210651 | Msa0969790:CDS |
| CTATTAATACCCTTACAAAG+AGG | 0.653915 | 6_4:-1211879 | Msa0969790:CDS |
| GCTCTGATGAAGCTAGAGGT+AGG | 0.654685 | 6_4:-1210722 | Msa0969790:CDS |
| AGTGGCGGAGCAAAGTGCGT+CGG | 0.656485 | 6_4:+1214978 | None:intergenic |
| AAATAGAACAGGACCTGCGG+CGG | 0.657187 | 6_4:-1211253 | Msa0969790:CDS |
| TTGATTACGGAGGAGAGTGG+CGG | 0.661451 | 6_4:+1214963 | None:intergenic |
| AGAAAATAGAACAGGACCTG+CGG | 0.664826 | 6_4:-1211256 | Msa0969790:CDS |
| TACCGGAGCTGCCTCCACCA+CGG | 0.667902 | 6_4:-1212206 | Msa0969790:CDS |
| GAGTTGATTACGGAGGAGAG+TGG | 0.668179 | 6_4:+1214960 | None:intergenic |
| GCTAAAGGCATCCATGGACA+CGG | 0.670630 | 6_4:+1210356 | None:intergenic |
| GGAAGTCCTTATGTTAACCG+TGG | 0.676008 | 6_4:-1211143 | Msa0969790:CDS |
| GCGAAGTTGAAAATGCAATG+TGG | 0.678148 | 6_4:-1210554 | Msa0969790:CDS |
| CCATGGACACGGATTTAGTG+CGG | 0.681554 | 6_4:+1210367 | None:intergenic |
| AAAGAGTATGCGAAGCAAGG+TGG | 0.683453 | 6_4:-1214377 | Msa0969790:CDS |
| AAATGATGACTATGATGGTG+AGG | 0.683700 | 6_4:-1210907 | Msa0969790:CDS |
| GGAGGAAAATGGCGGCAGTG+AGG | 0.684280 | 6_4:+1214916 | None:intergenic |
| GGATTTGGAGGACAATGACT+CGG | 0.695707 | 6_4:-1210526 | Msa0969790:CDS |
| AAGAGCTCTGGATCATGCCG+TGG | 0.696702 | 6_4:+1212189 | None:intergenic |
| CTGAAAAGGGAGGAAAATGG+CGG | 0.701002 | 6_4:+1214908 | None:intergenic |
| TGAGGATGAGGATGGCGCGG+CGG | 0.702516 | 6_4:+1214934 | None:intergenic |
| ATGCTTGCAAGACTGAGTGG+TGG | 0.703573 | 6_4:-1211982 | Msa0969790:CDS |
| GCGGAGGGAGTTGATTACGG+AGG | 0.725893 | 6_4:+1214953 | None:intergenic |
| GCGGATGGGAGTAAATCCTG+AGG | 0.727364 | 6_4:-1211234 | Msa0969790:CDS |
| GAAGAAACTTATGACTGACG+AGG | 0.727589 | 6_4:-1214290 | Msa0969790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAATATAAACTTTA+AGG | + | chr6_4:1209604-1209623 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTAAGAT+TGG | - | chr6_4:1209655-1209674 | Msa0969790:intron | 10.0% |
| !!! | ATATTTTTGATTTAATTAGT+TGG | + | chr6_4:1210748-1210767 | None:intergenic | 10.0% |
| !!! | TACATTTGTTAATTGTTAAT+TGG | - | chr6_4:1209680-1209699 | Msa0969790:intron | 15.0% |
| !!! | AATTATCATTTTCATTACTT+TGG | + | chr6_4:1210397-1210416 | None:intergenic | 15.0% |
| !! | ATAAACAAAAAATCTACAAA+AGG | + | chr6_4:1210639-1210658 | None:intergenic | 15.0% |
| !!! | TCTACTACAATTTTTATTTT+TGG | + | chr6_4:1210806-1210825 | None:intergenic | 15.0% |
| !!! | TCTCAATTAAAATTGTTTTA+TGG | - | chr6_4:1211239-1211258 | Msa0969790:CDS | 15.0% |
| !!! | AAAATTGTTTTATGGTTTAA+AGG | - | chr6_4:1211247-1211266 | Msa0969790:CDS | 15.0% |
| !!! | TTAATAGGTATCAAATTTTT+GGG | + | chr6_4:1212398-1212417 | None:intergenic | 15.0% |
| !!! | ATTAATAGGTATCAAATTTT+TGG | + | chr6_4:1212399-1212418 | None:intergenic | 15.0% |
| !! | GTATTATATTAGTAATTTGA+AGG | + | chr6_4:1212730-1212749 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATTGTTTTTTAC+AGG | - | chr6_4:1214540-1214559 | Msa0969790:intron | 15.0% |
| !!! | AAAGAAAATTGTTTTTTACA+GGG | - | chr6_4:1214541-1214560 | Msa0969790:intron | 15.0% |
| !!! | AAAGATATATTTGAAACTTA+GGG | + | chr6_4:1214903-1214922 | None:intergenic | 15.0% |
| !!! | AAAAGATATATTTGAAACTT+AGG | + | chr6_4:1214904-1214923 | None:intergenic | 15.0% |
| !! | GAATACAAAATTGAAGTAAA+CGG | + | chr6_4:1209545-1209564 | None:intergenic | 20.0% |
| !! | ATTGTTAATTGGTATTTCAT+AGG | - | chr6_4:1209691-1209710 | Msa0969790:intron | 20.0% |
| !! | GATTTATGTATTCGAATTTA+TGG | - | chr6_4:1210152-1210171 | Msa0969790:three_prime_UTR | 20.0% |
| !! | AACGTGATATACTTAAAATT+TGG | + | chr6_4:1210297-1210316 | None:intergenic | 20.0% |
| !! | TAGACATTAGAAAGTTTAAT+TGG | - | chr6_4:1210331-1210350 | Msa0969790:CDS | 20.0% |
| !! | ATTGTAAATGTTGTATAGAT+AGG | - | chr6_4:1211420-1211439 | Msa0969790:intron | 20.0% |
| !! | AAAAACAGTAGTATTGTTTA+AGG | + | chr6_4:1211480-1211499 | None:intergenic | 20.0% |
| !! | ACAATTACTTAAAACTGATA+AGG | + | chr6_4:1211779-1211798 | None:intergenic | 20.0% |
| !! | ATTTCTTTAATTCTTTCCTT+GGG | + | chr6_4:1212281-1212300 | None:intergenic | 20.0% |
| !!! | TAACTGATAATGAACAATAT+TGG | + | chr6_4:1212481-1212500 | None:intergenic | 20.0% |
| !! | AAACATAAAGAAAATAGAAC+AGG | - | chr6_4:1213026-1213045 | Msa0969790:intron | 20.0% |
| !! | AGGATAAATAATACAAGTAT+TGG | - | chr6_4:1213618-1213637 | Msa0969790:intron | 20.0% |
| !! | TTAAAAACTACAATGAATTC+TGG | + | chr6_4:1214133-1214152 | None:intergenic | 20.0% |
| !! | CTTGATATATTTATTAGAAG+TGG | - | chr6_4:1214487-1214506 | Msa0969790:CDS | 20.0% |
| !!! | AAGAAAATTTTCAGATTCAT+CGG | - | chr6_4:1214564-1214583 | Msa0969790:intron | 20.0% |
| !! | GAATTCAATTATCACAAAAT+TGG | + | chr6_4:1214959-1214978 | None:intergenic | 20.0% |
| !! | ATAATTGAATTCCAATGTTA+TGG | - | chr6_4:1214967-1214986 | Msa0969790:five_prime_UTR | 20.0% |
| ! | AAATTGAAGTAAACGGAAAA+GGG | + | chr6_4:1209538-1209557 | None:intergenic | 25.0% |
| ! | AAAATTGAAGTAAACGGAAA+AGG | + | chr6_4:1209539-1209558 | None:intergenic | 25.0% |
| !! | TTTAAGGAAAAAGCGTAAAA+GGG | + | chr6_4:1209588-1209607 | None:intergenic | 25.0% |
| ! | AATTGGTATTTCATAGGAAT+AGG | - | chr6_4:1209697-1209716 | Msa0969790:intron | 25.0% |
| !!! | ATTCGATGTTTTTGTCTTTT+TGG | - | chr6_4:1209738-1209757 | Msa0969790:intron | 25.0% |
| ! | AACAATAAAAGCTATCGTTA+TGG | + | chr6_4:1209832-1209851 | None:intergenic | 25.0% |
| ! | GTATTCGAATTTATGGTTTA+AGG | - | chr6_4:1210159-1210178 | Msa0969790:three_prime_UTR | 25.0% |
| ! | AATTGTTAAGATTAGAACAG+GGG | + | chr6_4:1210251-1210270 | None:intergenic | 25.0% |
| ! | CAATTGTTAAGATTAGAACA+GGG | + | chr6_4:1210252-1210271 | None:intergenic | 25.0% |
| ! | CTGTTCTAATCTTAACAATT+GGG | - | chr6_4:1210251-1210270 | Msa0969790:CDS | 25.0% |
| !! | TGGCATTTTCTTTTTATTAG+CGG | + | chr6_4:1210277-1210296 | None:intergenic | 25.0% |
| ! | TACATTATGAGTATAGAATC+TGG | - | chr6_4:1210533-1210552 | Msa0969790:CDS | 25.0% |
| ! | ACATTATGAGTATAGAATCT+GGG | - | chr6_4:1210534-1210553 | Msa0969790:CDS | 25.0% |
| !! | GTATCTTTTCTCTCTTTTAT+GGG | + | chr6_4:1210778-1210797 | None:intergenic | 25.0% |
| !! | TGTATCTTTTCTCTCTTTTA+TGG | + | chr6_4:1210779-1210798 | None:intergenic | 25.0% |
| ! | ATTATACCAAACCTTTATAC+AGG | - | chr6_4:1210839-1210858 | Msa0969790:CDS | 25.0% |
| !!! | ATTTATTTTGCCGCAATTTT+GGG | + | chr6_4:1210981-1211000 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATTGAGAAGCA+CGG | + | chr6_4:1211235-1211254 | None:intergenic | 25.0% |
| ! | CAACTTATGTTGTAAAGTAT+TGG | - | chr6_4:1211324-1211343 | Msa0969790:intron | 25.0% |
| !!! | AAGTTTATTCAAGCTGATTT+TGG | - | chr6_4:1211397-1211416 | Msa0969790:intron | 25.0% |
| !!! | TACAAGTTTGTTATAAGTTG+TGG | + | chr6_4:1211631-1211650 | None:intergenic | 25.0% |
| ! | CAATGAAGTAGTTAAATTCT+TGG | + | chr6_4:1211826-1211845 | None:intergenic | 25.0% |
| ! | CAAGAATTTAACTACTTCAT+TGG | - | chr6_4:1211824-1211843 | Msa0969790:intron | 25.0% |
| !!! | GTCTATGTTTAATTTTGTTG+TGG | - | chr6_4:1211954-1211973 | Msa0969790:CDS | 25.0% |
| ! | TTTCTTTAATTCTTTCCTTG+GGG | + | chr6_4:1212280-1212299 | None:intergenic | 25.0% |
| ! | CATTTCTTTAATTCTTTCCT+TGG | + | chr6_4:1212282-1212301 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAATTAAAGAAA+TGG | - | chr6_4:1212280-1212299 | Msa0969790:intron | 25.0% |
| ! | AATCATGAACTGTCATATTT+AGG | - | chr6_4:1212453-1212472 | Msa0969790:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | - | chr6_4:1212510-1212529 | Msa0969790:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | - | chr6_4:1212510-1212529 | Msa0969790:intron | 25.0% |
| !! | TGAAAATGCTTTTGTGATTA+TGG | + | chr6_4:1212614-1212633 | None:intergenic | 25.0% |
| !! | TGATTGACTTTAATGTTTCA+AGG | - | chr6_4:1212866-1212885 | Msa0969790:intron | 25.0% |
| ! | GTTTAATAGATACCATAACT+AGG | + | chr6_4:1212907-1212926 | None:intergenic | 25.0% |
| ! | TTCAGCTTCATATTCTTTAT+CGG | + | chr6_4:1213274-1213293 | None:intergenic | 25.0% |
| !!! | AATAATACAAGTATTGGCAA+TGG | - | chr6_4:1213624-1213643 | Msa0969790:intron | 25.0% |
| ! | AAAACTATTACGATATTGAG+CGG | + | chr6_4:1213862-1213881 | None:intergenic | 25.0% |
| ! | GTCTATGAAAAATAGTGAAA+GGG | + | chr6_4:1214739-1214758 | None:intergenic | 25.0% |
| ! | TGTCTATGAAAAATAGTGAA+AGG | + | chr6_4:1214740-1214759 | None:intergenic | 25.0% |
| !! | TAGACATATTTCTTGTTTGA+AGG | - | chr6_4:1214754-1214773 | Msa0969790:intron | 25.0% |
| !! | AGACATATTTCTTGTTTGAA+GGG | - | chr6_4:1214755-1214774 | Msa0969790:intron | 25.0% |
| ! | CACATATAATTCCATAACAT+TGG | + | chr6_4:1214981-1215000 | None:intergenic | 25.0% |
| CTCATTCTTCAAACTGAAAA+GGG | + | chr6_4:1209398-1209417 | None:intergenic | 30.0% | |
| ACTCATTCTTCAAACTGAAA+AGG | + | chr6_4:1209399-1209418 | None:intergenic | 30.0% | |
| AGTTGAAAGAGAGATGAAAT+GGG | + | chr6_4:1209492-1209511 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAGATGAAA+TGG | + | chr6_4:1209493-1209512 | None:intergenic | 30.0% | |
| ! | TTAAGGAAAAAGCGTAAAAG+GGG | + | chr6_4:1209587-1209606 | None:intergenic | 30.0% |
| ! | CTTTAAGGAAAAAGCGTAAA+AGG | + | chr6_4:1209589-1209608 | None:intergenic | 30.0% |
| ! | AAACCGTTGAATCTTTTGAA+TGG | - | chr6_4:1209857-1209876 | Msa0969790:intron | 30.0% |
| GATCCATTCAAAAGATTCAA+CGG | + | chr6_4:1209863-1209882 | None:intergenic | 30.0% | |
| AAGAGTCTGGTAAAACATTA+AGG | - | chr6_4:1209951-1209970 | Msa0969790:three_prime_UTR | 30.0% | |
| AGAGTCTGGTAAAACATTAA+GGG | - | chr6_4:1209952-1209971 | Msa0969790:three_prime_UTR | 30.0% | |
| CAACATCTCAAAGCAATATA+TGG | + | chr6_4:1210122-1210141 | None:intergenic | 30.0% | |
| AAAGCCTTCTTAAACACTTT+AGG | - | chr6_4:1210225-1210244 | Msa0969790:CDS | 30.0% | |
| CCAATTGTTAAGATTAGAAC+AGG | + | chr6_4:1210253-1210272 | None:intergenic | 30.0% | |
| CCTGTTCTAATCTTAACAAT+TGG | - | chr6_4:1210250-1210269 | Msa0969790:CDS | 30.0% | |
| TTGATGCATGATTGATCATA+AGG | - | chr6_4:1210416-1210435 | Msa0969790:CDS | 30.0% | |
| TGATGCATGATTGATCATAA+GGG | - | chr6_4:1210417-1210436 | Msa0969790:CDS | 30.0% | |
| ATCATAAGGGGATAATTTGA+TGG | - | chr6_4:1210430-1210449 | Msa0969790:CDS | 30.0% | |
| AGAGTGATTCAAAATAGACA+TGG | - | chr6_4:1210460-1210479 | Msa0969790:CDS | 30.0% | |
| AAAATAGACATGGAACTGTT+AGG | - | chr6_4:1210470-1210489 | Msa0969790:CDS | 30.0% | |
| !! | TTTTGTTTATCTTGCCATCA+CGG | - | chr6_4:1210649-1210668 | Msa0969790:CDS | 30.0% |
| AAACTTCCTGTATAAAGGTT+TGG | + | chr6_4:1210848-1210867 | None:intergenic | 30.0% | |
| ! | AGTTCTCTTTGTTCTAAATG+TGG | + | chr6_4:1210958-1210977 | None:intergenic | 30.0% |
| !!! | GATTTATTTTGCCGCAATTT+TGG | + | chr6_4:1210982-1211001 | None:intergenic | 30.0% |
| TCAGACAAAATTAAATGCTG+TGG | - | chr6_4:1211020-1211039 | Msa0969790:CDS | 30.0% | |
| ! | ATCCTTTATTTGTGTGTAGT+CGG | - | chr6_4:1211071-1211090 | Msa0969790:CDS | 30.0% |
| TTTCTTCTGAATTCTGATCT+GGG | - | chr6_4:1211128-1211147 | Msa0969790:CDS | 30.0% | |
| ! | TTTTATGGTTTAAAGGCTCA+TGG | - | chr6_4:1211254-1211273 | Msa0969790:CDS | 30.0% |
| ACAAACTTGTATGACAATTC+TGG | - | chr6_4:1211640-1211659 | Msa0969790:intron | 30.0% | |
| !! | TGGCGATTTTAACAAAATTG+AGG | - | chr6_4:1211660-1211679 | Msa0969790:intron | 30.0% |
| !!! | GCTTGAAAATTTTCAAGTCA+CGG | + | chr6_4:1211885-1211904 | None:intergenic | 30.0% |
| CTTCAGGCGTATAAAAAAAT+TGG | - | chr6_4:1212137-1212156 | Msa0969790:CDS | 30.0% | |
| AACAAGAATTATGTTCCAGT+TGG | - | chr6_4:1212167-1212186 | Msa0969790:CDS | 30.0% | |
| !!! | TAGGTATCAAATTTTTGGGT+TGG | + | chr6_4:1212394-1212413 | None:intergenic | 30.0% |
| !! | CTCTTTGTAAGGGTATTAAT+AGG | + | chr6_4:1212413-1212432 | None:intergenic | 30.0% |
| CTATTAATACCCTTACAAAG+AGG | - | chr6_4:1212411-1212430 | Msa0969790:intron | 30.0% | |
| TTGTGATTATGGTCAATTCA+AGG | + | chr6_4:1212603-1212622 | None:intergenic | 30.0% | |
| !!! | CACAAAAGCATTTTCAAATG+TGG | - | chr6_4:1212618-1212637 | Msa0969790:intron | 30.0% |
| ACTAACGAAAGAACATTTGA+TGG | + | chr6_4:1212664-1212683 | None:intergenic | 30.0% | |
| TGTTCTTTCGTTAGTTAGTT+TGG | - | chr6_4:1212669-1212688 | Msa0969790:intron | 30.0% | |
| TAATGTAAGACACACATTCA+AGG | + | chr6_4:1212696-1212715 | None:intergenic | 30.0% | |
| CTAATATAATACACACTCAG+TGG | - | chr6_4:1212738-1212757 | Msa0969790:intron | 30.0% | |
| TTGTGAACATTCAGAAGTTT+CGG | - | chr6_4:1212775-1212794 | Msa0969790:intron | 30.0% | |
| !! | ATTTTAGTCCCTAAATGTGT+GGG | + | chr6_4:1212810-1212829 | None:intergenic | 30.0% |
| !! | AATTTTAGTCCCTAAATGTG+TGG | + | chr6_4:1212811-1212830 | None:intergenic | 30.0% |
| CTAAAATTACTGTTTGCTCT+TGG | - | chr6_4:1212823-1212842 | Msa0969790:intron | 30.0% | |
| GTTTCAAGGACAAAAGAATT+TGG | - | chr6_4:1212880-1212899 | Msa0969790:intron | 30.0% | |
| AAAGAATTTGGTCCTAGTTA+TGG | - | chr6_4:1212892-1212911 | Msa0969790:intron | 30.0% | |
| TTGCTACCGTTATTATATAC+AGG | - | chr6_4:1212957-1212976 | Msa0969790:intron | 30.0% | |
| ATAGGGCCTGTATATAATAA+CGG | + | chr6_4:1212966-1212985 | None:intergenic | 30.0% | |
| TCATTAGGTTCTATTACTGA+CGG | + | chr6_4:1213180-1213199 | None:intergenic | 30.0% | |
| TCAGTAATAGAACCTAATGA+TGG | - | chr6_4:1213180-1213199 | Msa0969790:intron | 30.0% | |
| AATAGAACCTAATGATGGTT+TGG | - | chr6_4:1213185-1213204 | Msa0969790:intron | 30.0% | |
| TAAAGAATATGAAGCTGAAG+AGG | - | chr6_4:1213275-1213294 | Msa0969790:intron | 30.0% | |
| AGTTTGGAAGACTTAGATAT+TGG | - | chr6_4:1213313-1213332 | Msa0969790:intron | 30.0% | |
| TCTAGAAATGATGACTATGA+TGG | - | chr6_4:1213378-1213397 | Msa0969790:intron | 30.0% | |
| ! | AGCTAAATTTAGGACGAATA+TGG | - | chr6_4:1213680-1213699 | Msa0969790:intron | 30.0% |
| ! | GCTAAATTTAGGACGAATAT+GGG | - | chr6_4:1213681-1213700 | Msa0969790:intron | 30.0% |
| !!! | CCTTACTATTTTGACTTGTA+GGG | + | chr6_4:1214025-1214044 | None:intergenic | 30.0% |
| !!! | ACCTTACTATTTTGACTTGT+AGG | + | chr6_4:1214026-1214045 | None:intergenic | 30.0% |
| TACAAGTCAAAATAGTAAGG+TGG | - | chr6_4:1214025-1214044 | Msa0969790:intron | 30.0% | |
| ATTCTGGTATAGCATTTACT+TGG | + | chr6_4:1214117-1214136 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTGACAATCAGAA+CGG | - | chr6_4:1214154-1214173 | Msa0969790:intron | 30.0% |
| AACCAATCAACAATTTCTTC+AGG | + | chr6_4:1214349-1214368 | None:intergenic | 30.0% | |
| TGGTTGAAACAAAATCATCA+AGG | - | chr6_4:1214364-1214383 | Msa0969790:CDS | 30.0% | |
| GGTTGAAACAAAATCATCAA+GGG | - | chr6_4:1214365-1214384 | Msa0969790:CDS | 30.0% | |
| TACTCAAAAGCTACAAATAG+TGG | + | chr6_4:1214669-1214688 | None:intergenic | 30.0% | |
| AAACTGAAAAGGGAGGAAAA+TGG | + | chr6_4:1209388-1209407 | None:intergenic | 35.0% | |
| ATTCTTCAAACTGAAAAGGG+AGG | + | chr6_4:1209395-1209414 | None:intergenic | 35.0% | |
| AACTTCAATCCAATCTCTTC+AGG | - | chr6_4:1209508-1209527 | Msa0969790:intron | 35.0% | |
| AAAGCGTAAAAGGGGTTTAA+GGG | + | chr6_4:1209579-1209598 | None:intergenic | 35.0% | |
| ! | AAAAGCGTAAAAGGGGTTTA+AGG | + | chr6_4:1209580-1209599 | None:intergenic | 35.0% |
| TTCACCAAGATTCTAGTCTA+AGG | - | chr6_4:1209626-1209645 | Msa0969790:intron | 35.0% | |
| ACAACCTTAGACTAGAATCT+TGG | + | chr6_4:1209633-1209652 | None:intergenic | 35.0% | |
| TTCAGAAATGTTGTGCCTTT+AGG | - | chr6_4:1209761-1209780 | Msa0969790:intron | 35.0% | |
| ! | TTTTGAATGGATCCTTGTGT+CGG | - | chr6_4:1209870-1209889 | Msa0969790:intron | 35.0% |
| TCGACAAACAGTTATTAGAC+GGG | + | chr6_4:1210068-1210087 | None:intergenic | 35.0% | |
| GTCGACAAACAGTTATTAGA+CGG | + | chr6_4:1210069-1210088 | None:intergenic | 35.0% | |
| GATGCATGATTGATCATAAG+GGG | - | chr6_4:1210418-1210437 | Msa0969790:CDS | 35.0% | |
| GATTGAGATTCTGTCAAGAA+GGG | - | chr6_4:1210492-1210511 | Msa0969790:CDS | 35.0% | |
| ATTGAGATTCTGTCAAGAAG+GGG | - | chr6_4:1210493-1210512 | Msa0969790:CDS | 35.0% | |
| GTATAGAATCTGGGTTTAAC+AGG | - | chr6_4:1210543-1210562 | Msa0969790:CDS | 35.0% | |
| TTTGTTTATCTTGCCATCAC+GGG | - | chr6_4:1210650-1210669 | Msa0969790:CDS | 35.0% | |
| AGCTCAAACTTCCTGTATAA+AGG | + | chr6_4:1210853-1210872 | None:intergenic | 35.0% | |
| ! | CTTTGTTCTAAATGTGGCAT+GGG | + | chr6_4:1210952-1210971 | None:intergenic | 35.0% |
| ! | TCTTTGTTCTAAATGTGGCA+TGG | + | chr6_4:1210953-1210972 | None:intergenic | 35.0% |
| AAAGAGAACTCCCAAAATTG+CGG | - | chr6_4:1210968-1210987 | Msa0969790:CDS | 35.0% | |
| AATTGCGGCAAAATAAATCC+AGG | - | chr6_4:1210983-1211002 | Msa0969790:CDS | 35.0% | |
| TTTATTTGTGTGTAGTCGGT+GGG | - | chr6_4:1211075-1211094 | Msa0969790:CDS | 35.0% | |
| GTTTCTTCTGAATTCTGATC+TGG | - | chr6_4:1211127-1211146 | Msa0969790:CDS | 35.0% | |
| !! | TTTTAATTGAGAAGCACGGT+GGG | + | chr6_4:1211231-1211250 | None:intergenic | 35.0% |
| !!! | ATTTTAATTGAGAAGCACGG+TGG | + | chr6_4:1211232-1211251 | None:intergenic | 35.0% |
| GTGAAAGTAGTAAGCAGAAT+TGG | - | chr6_4:1211542-1211561 | Msa0969790:intron | 35.0% | |
| ! | TTTGTTATAAGTTGTGGCCA+TGG | + | chr6_4:1211625-1211644 | None:intergenic | 35.0% |
| GCTTAAGAAATATGAGCTAC+CGG | - | chr6_4:1212067-1212086 | Msa0969790:CDS | 35.0% | |
| TGCAAAATATGCATCTCCAT+TGG | - | chr6_4:1212216-1212235 | Msa0969790:CDS | 35.0% | |
| AAAACAATCATCATGTTCCG+TGG | - | chr6_4:1212356-1212375 | Msa0969790:intron | 35.0% | |
| !!! | GTATCAAATTTTTGGGTTGG+CGG | + | chr6_4:1212391-1212410 | None:intergenic | 35.0% |
| TAATACCCTTACAAAGAGGA+AGG | - | chr6_4:1212415-1212434 | Msa0969790:intron | 35.0% | |
| TCTTACCTTCCTCTTTGTAA+GGG | + | chr6_4:1212423-1212442 | None:intergenic | 35.0% | |
| ATCTTACCTTCCTCTTTGTA+AGG | + | chr6_4:1212424-1212443 | None:intergenic | 35.0% | |
| ! | TGATGGACAAAACTGACTAA+CGG | + | chr6_4:1212647-1212666 | None:intergenic | 35.0% |
| GTGTCTTACATTAGTCAGTT+TGG | - | chr6_4:1212703-1212722 | Msa0969790:intron | 35.0% | |
| ! | TTTTAGTCCCTAAATGTGTG+GGG | + | chr6_4:1212809-1212828 | None:intergenic | 35.0% |
| TTATATACAGGCCCTATTCA+AGG | - | chr6_4:1212969-1212988 | Msa0969790:intron | 35.0% | |
| AATGCCATTGACAAGAAAGA+TGG | - | chr6_4:1213126-1213145 | Msa0969790:intron | 35.0% | |
| ACTTCCATCTTTCTTGTCAA+TGG | + | chr6_4:1213133-1213152 | None:intergenic | 35.0% | |
| AGCTTCATATTCTTTATCGG+CGG | + | chr6_4:1213271-1213290 | None:intergenic | 35.0% | |
| ! | TCCAAACTCTTCCTTTTCTT+TGG | + | chr6_4:1213301-1213320 | None:intergenic | 35.0% |
| TATTGGAACAGAGAAGAGTA+TGG | - | chr6_4:1213330-1213349 | Msa0969790:intron | 35.0% | |
| ! | AAATGATGACTATGATGGTG+AGG | - | chr6_4:1213383-1213402 | Msa0969790:intron | 35.0% |
| AGAATATACATCCCAAGCAT+CGG | - | chr6_4:1213427-1213446 | Msa0969790:intron | 35.0% | |
| ! | GATGTTGACAGCAATTTTGA+TGG | - | chr6_4:1213546-1213565 | Msa0969790:intron | 35.0% |
| ATTGGCAATGGTCAAGTTAA+TGG | - | chr6_4:1213636-1213655 | Msa0969790:intron | 35.0% | |
| CGAAGTTGAAAATGCAATGT+GGG | - | chr6_4:1213737-1213756 | Msa0969790:intron | 35.0% | |
| CCCTACAAGTCAAAATAGTA+AGG | - | chr6_4:1214022-1214041 | Msa0969790:intron | 35.0% | |
| TGTGTACACCGAAGTTATTT+AGG | - | chr6_4:1214305-1214324 | Msa0969790:CDS | 35.0% | |
| TACACCGAAGTTATTTAGGT+GGG | - | chr6_4:1214309-1214328 | Msa0969790:CDS | 35.0% | |
| TGCCTGAAGAAATTGTTGAT+TGG | - | chr6_4:1214344-1214363 | Msa0969790:CDS | 35.0% | |
| TGAGAAGGAATAACAGTAAG+AGG | + | chr6_4:1214410-1214429 | None:intergenic | 35.0% | |
| GAGGTAACATTATTGTGAGA+AGG | + | chr6_4:1214425-1214444 | None:intergenic | 35.0% | |
| TCAAGTACATCATGACTAGT+AGG | + | chr6_4:1214472-1214491 | None:intergenic | 35.0% | |
| TCGGAGATAAGTAGCATATT+TGG | - | chr6_4:1214583-1214602 | Msa0969790:intron | 35.0% | |
| !! | TTGAACGAGTTAGCTTGTTA+GGG | + | chr6_4:1214814-1214833 | None:intergenic | 35.0% |
| TTGTTCAATGATCACGTATG+TGG | + | chr6_4:1214853-1214872 | None:intergenic | 35.0% | |
| ! | GAGAGATGAAATGGGTTTGA+GGG | + | chr6_4:1209484-1209503 | None:intergenic | 40.0% |
| ! | AGAGAGATGAAATGGGTTTG+AGG | + | chr6_4:1209485-1209504 | None:intergenic | 40.0% |
| AAGGGTTTACCTGAAGAGAT+TGG | + | chr6_4:1209520-1209539 | None:intergenic | 40.0% | |
| !! | AATGTTGTGCCTTTAGGACA+AGG | - | chr6_4:1209767-1209786 | Msa0969790:intron | 40.0% |
| TGCTCTATTCCTTGTCCTAA+AGG | + | chr6_4:1209779-1209798 | None:intergenic | 40.0% | |
| TTTGAATGGATCCTTGTGTC+GGG | - | chr6_4:1209871-1209890 | Msa0969790:intron | 40.0% | |
| AGAAGAATGCAGAAAGAGTC+TGG | - | chr6_4:1209938-1209957 | Msa0969790:three_prime_UTR | 40.0% | |
| GAAGAAACTTATGACTGACG+AGG | - | chr6_4:1210000-1210019 | Msa0969790:three_prime_UTR | 40.0% | |
| GGATTGAGATTCTGTCAAGA+AGG | - | chr6_4:1210491-1210510 | Msa0969790:CDS | 40.0% | |
| !! | TGGGTTTAACAGGTGTTGAA+TGG | - | chr6_4:1210553-1210572 | Msa0969790:CDS | 40.0% |
| ACAAAAGGCTAGCGAAAACA+TGG | + | chr6_4:1210624-1210643 | None:intergenic | 40.0% | |
| TTGTTTATCTTGCCATCACG+GGG | - | chr6_4:1210651-1210670 | Msa0969790:CDS | 40.0% | |
| TGGTAAAGCTTTCGTCAATG+CGG | + | chr6_4:1210910-1210929 | None:intergenic | 40.0% | |
| CTGAACAGAAATTACCTTCC+TGG | + | chr6_4:1211004-1211023 | None:intergenic | 40.0% | |
| ! | CACCGACTACACACAAATAA+AGG | + | chr6_4:1211076-1211095 | None:intergenic | 40.0% |
| ! | CTTTATTTGTGTGTAGTCGG+TGG | - | chr6_4:1211074-1211093 | Msa0969790:CDS | 40.0% |
| GGCCAAAGTCATGAAAGTTT+GGG | - | chr6_4:1211149-1211168 | Msa0969790:CDS | 40.0% | |
| ! | TTTAATTGAGAAGCACGGTG+GGG | + | chr6_4:1211230-1211249 | None:intergenic | 40.0% |
| GTGCTCGTTATATGATCTCT+TGG | - | chr6_4:1211976-1211995 | Msa0969790:CDS | 40.0% | |
| TTTGCCTGCAAACAGTTGAA+GGG | + | chr6_4:1212020-1212039 | None:intergenic | 40.0% | |
| TTTATACGCCTGAAGCTGTT+CGG | + | chr6_4:1212132-1212151 | None:intergenic | 40.0% | |
| CAGTCTCATGAAACTTCCAA+TGG | + | chr6_4:1212235-1212254 | None:intergenic | 40.0% | |
| ATGGTCAATTCAAGGACTAC+AGG | + | chr6_4:1212595-1212614 | None:intergenic | 40.0% | |
| !! | CTCAAATCTGGCCTTGAATA+GGG | + | chr6_4:1212983-1213002 | None:intergenic | 40.0% |
| ! | TTCAAGAGCTTGCTCAAATC+TGG | + | chr6_4:1212995-1213014 | None:intergenic | 40.0% |
| AGAAAATAGAACAGGACCTG+CGG | - | chr6_4:1213034-1213053 | Msa0969790:intron | 40.0% | |
| ! | GTCAATGGCATTGAAGAAAG+TGG | + | chr6_4:1213118-1213137 | None:intergenic | 40.0% |
| TTGTCTCCACGGTTAACATA+AGG | + | chr6_4:1213156-1213175 | None:intergenic | 40.0% | |
| ! | AGAACCTAATGATGGTTTGG+AGG | - | chr6_4:1213188-1213207 | Msa0969790:intron | 40.0% |
| GATTCCTCCAAACCATCATT+AGG | + | chr6_4:1213195-1213214 | None:intergenic | 40.0% | |
| GCCAAAGAAAAGGAAGAGTT+TGG | - | chr6_4:1213297-1213316 | Msa0969790:intron | 40.0% | |
| ATTCTCTTCATCGTCGCTAT+CGG | + | chr6_4:1213457-1213476 | None:intergenic | 40.0% | |
| AGGTAGGTTCAAGGAAAGTA+GGG | - | chr6_4:1213584-1213603 | Msa0969790:intron | 40.0% | |
| GACACGGTGAAGCTAAATTT+AGG | - | chr6_4:1213670-1213689 | Msa0969790:intron | 40.0% | |
| GCGAAGTTGAAAATGCAATG+TGG | - | chr6_4:1213736-1213755 | Msa0969790:intron | 40.0% | |
| TGAAAATGCAATGTGGGAGT+CGG | - | chr6_4:1213743-1213762 | Msa0969790:intron | 40.0% | |
| !! | AATGACTCGGTACATTTGAG+AGG | - | chr6_4:1213777-1213796 | Msa0969790:intron | 40.0% |
| AATGCACCAAAGAGTTTGAG+AGG | - | chr6_4:1213882-1213901 | Msa0969790:intron | 40.0% | |
| ! | CCTTTGGTGATCTCTTCTTA+TGG | + | chr6_4:1214064-1214083 | None:intergenic | 40.0% |
| CCATAAGAAGAGATCACCAA+AGG | - | chr6_4:1214061-1214080 | Msa0969790:intron | 40.0% | |
| AAAGGAAGCTGATGAAGCTT+GGG | - | chr6_4:1214079-1214098 | Msa0969790:intron | 40.0% | |
| TGTTTGACAATCAGAACGGA+TGG | - | chr6_4:1214158-1214177 | Msa0969790:intron | 40.0% | |
| ! | GTTTCTGAAAAACGAGAGGT+GGG | + | chr6_4:1214196-1214215 | None:intergenic | 40.0% |
| ! | TGTGGTTTCTGAAAAACGAG+AGG | + | chr6_4:1214200-1214219 | None:intergenic | 40.0% |
| GTACACCGAAGTTATTTAGG+TGG | - | chr6_4:1214308-1214327 | Msa0969790:CDS | 40.0% | |
| AATAGAACCTTGAGGAGTTG+AGG | + | chr6_4:1214447-1214466 | None:intergenic | 40.0% | |
| AGTAGGACAATAGAACCTTG+AGG | + | chr6_4:1214455-1214474 | None:intergenic | 40.0% | |
| GGGTAATTCTTGTGTGTTCA+TGG | + | chr6_4:1214719-1214738 | None:intergenic | 40.0% | |
| !! | CTTGAACGAGTTAGCTTGTT+AGG | + | chr6_4:1214815-1214834 | None:intergenic | 40.0% |
| GAGAAGAGAAGGGTTTCAAG+GGG | + | chr6_4:1209289-1209308 | None:intergenic | 45.0% | |
| GGAGAAGAGAAGGGTTTCAA+GGG | + | chr6_4:1209290-1209309 | None:intergenic | 45.0% | |
| AGGAGAAGAGAAGGGTTTCA+AGG | + | chr6_4:1209291-1209310 | None:intergenic | 45.0% | |
| CTGAAAAGGGAGGAAAATGG+CGG | + | chr6_4:1209385-1209404 | None:intergenic | 45.0% | |
| TTGAATGGATCCTTGTGTCG+GGG | - | chr6_4:1209872-1209891 | Msa0969790:intron | 45.0% | |
| ! | AGGAAAGAGTATGCGAAGCA+AGG | - | chr6_4:1209910-1209929 | Msa0969790:intron | 45.0% |
| ! | AAAGAGTATGCGAAGCAAGG+TGG | - | chr6_4:1209913-1209932 | Msa0969790:three_prime_UTR | 45.0% |
| AACTTATGACTGACGAGGAG+CGG | - | chr6_4:1210005-1210024 | Msa0969790:three_prime_UTR | 45.0% | |
| ! | GGGGCCTAAAGTGTTTAAGA+AGG | + | chr6_4:1210232-1210251 | None:intergenic | 45.0% |
| TGTTTATCTTGCCATCACGG+GGG | - | chr6_4:1210652-1210671 | Msa0969790:CDS | 45.0% | |
| CTTTCGTCAATGCGGTTTCA+GGG | + | chr6_4:1210902-1210921 | None:intergenic | 45.0% | |
| GCGGCAAAATAAATCCAGGA+AGG | - | chr6_4:1210987-1211006 | Msa0969790:CDS | 45.0% | |
| AGAATCGAACTTCGTGATCG+AGG | + | chr6_4:1211049-1211068 | None:intergenic | 45.0% | |
| GGGCCAAAGTCATGAAAGTT+TGG | - | chr6_4:1211148-1211167 | Msa0969790:CDS | 45.0% | |
| GGCCCAAACTTTCATGACTT+TGG | + | chr6_4:1211154-1211173 | None:intergenic | 45.0% | |
| ACTTTGATGCCTGTGCGAAA+TGG | - | chr6_4:1211582-1211601 | Msa0969790:intron | 45.0% | |
| CTTTGATGCCTGTGCGAAAT+GGG | - | chr6_4:1211583-1211602 | Msa0969790:intron | 45.0% | |
| TTTGATGCCTGTGCGAAATG+GGG | - | chr6_4:1211584-1211603 | Msa0969790:intron | 45.0% | |
| GGCAAGTTCAAGTGTTTCCA+TGG | - | chr6_4:1211605-1211624 | Msa0969790:intron | 45.0% | |
| AAGAATGCGTGCATGTGTAC+TGG | - | chr6_4:1211712-1211731 | Msa0969790:intron | 45.0% | |
| CTTTGCCTGCAAACAGTTGA+AGG | + | chr6_4:1212021-1212040 | None:intergenic | 45.0% | |
| TTATACGCCTGAAGCTGTTC+GGG | + | chr6_4:1212131-1212150 | None:intergenic | 45.0% | |
| ! | TATGTTCCAGTTGGTGTTCG+TGG | - | chr6_4:1212176-1212195 | Msa0969790:CDS | 45.0% |
| AATACTCCACGAACACCAAC+TGG | + | chr6_4:1212185-1212204 | None:intergenic | 45.0% | |
| ! | GTTGGTGTTCGTGGAGTATT+TGG | - | chr6_4:1212185-1212204 | Msa0969790:CDS | 45.0% |
| TTGTTGTGACAACTTCCCCA+AGG | - | chr6_4:1212262-1212281 | Msa0969790:intron | 45.0% | |
| TCAATGCTTGCAAGACTGAG+TGG | - | chr6_4:1212305-1212324 | Msa0969790:intron | 45.0% | |
| GTTGGCGGTAATTTCTACCA+CGG | + | chr6_4:1212376-1212395 | None:intergenic | 45.0% | |
| TGACACTACCCCACACATTT+AGG | - | chr6_4:1212798-1212817 | Msa0969790:intron | 45.0% | |
| GACACTACCCCACACATTTA+GGG | - | chr6_4:1212799-1212818 | Msa0969790:intron | 45.0% | |
| !! | GCTCAAATCTGGCCTTGAAT+AGG | + | chr6_4:1212984-1213003 | None:intergenic | 45.0% |
| AGAAAGTGGAAGCCACTCTT+TGG | + | chr6_4:1213104-1213123 | None:intergenic | 45.0% | |
| GGAAGTCCTTATGTTAACCG+TGG | - | chr6_4:1213147-1213166 | Msa0969790:intron | 45.0% | |
| CTGAACAGGAAGAGCTAGAT+CGG | - | chr6_4:1213223-1213242 | Msa0969790:intron | 45.0% | |
| TCGGTTCATCGCTGATATAG+AGG | - | chr6_4:1213242-1213261 | Msa0969790:intron | 45.0% | |
| AGCTGAAGAGGCCAAAGAAA+AGG | - | chr6_4:1213287-1213306 | Msa0969790:intron | 45.0% | |
| ! | TGGAACAGAGAAGAGTATGG+TGG | - | chr6_4:1213333-1213352 | Msa0969790:intron | 45.0% |
| ! | GACTATGATGGTGAGGTTAG+AGG | - | chr6_4:1213390-1213409 | Msa0969790:intron | 45.0% |
| AGGTTAGAGGCTCAAGAGTT+CGG | - | chr6_4:1213403-1213422 | Msa0969790:intron | 45.0% | |
| GCTGTCAACATCACTGTCAT+CGG | + | chr6_4:1213538-1213557 | None:intergenic | 45.0% | |
| TGAAGCTAGAGGTAGGTTCA+AGG | - | chr6_4:1213575-1213594 | Msa0969790:intron | 45.0% | |
| GAGGTAGGTTCAAGGAAAGT+AGG | - | chr6_4:1213583-1213602 | Msa0969790:intron | 45.0% | |
| GGTAGGTTCAAGGAAAGTAG+GGG | - | chr6_4:1213585-1213604 | Msa0969790:intron | 45.0% | |
| GTAGGTTCAAGGAAAGTAGG+GGG | - | chr6_4:1213586-1213605 | Msa0969790:intron | 45.0% | |
| GGCAATGGTCAAGTTAATGG+TGG | - | chr6_4:1213639-1213658 | Msa0969790:intron | 45.0% | |
| GGATTTGGAGGACAATGACT+CGG | - | chr6_4:1213764-1213783 | Msa0969790:intron | 45.0% | |
| ACCAAAGAGTTTGAGAGGCA+GGG | - | chr6_4:1213887-1213906 | Msa0969790:intron | 45.0% | |
| CAAGCTTCATCAGCTTCCTT+TGG | + | chr6_4:1214080-1214099 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGATGAAGCT+TGG | - | chr6_4:1214078-1214097 | Msa0969790:intron | 45.0% | |
| ! | GGTTTCTGAAAAACGAGAGG+TGG | + | chr6_4:1214197-1214216 | None:intergenic | 45.0% |
| ACCGAAGTTATTTAGGTGGG+TGG | - | chr6_4:1214312-1214331 | Msa0969790:CDS | 45.0% | |
| CCCACCCACCTAAATAACTT+CGG | + | chr6_4:1214316-1214335 | None:intergenic | 45.0% | |
| CCGAAGTTATTTAGGTGGGT+GGG | - | chr6_4:1214313-1214332 | Msa0969790:CDS | 45.0% | |
| TCAGAAAAGCCACGGCAAAT+AGG | + | chr6_4:1214644-1214663 | None:intergenic | 45.0% | |
| TAGTGGCTTCAGAAAAGCCA+CGG | + | chr6_4:1214652-1214671 | None:intergenic | 45.0% | |
| TTGATTACGGAGGAGAGTGG+CGG | + | chr6_4:1209330-1209349 | None:intergenic | 50.0% | |
| ! | GAGTTGATTACGGAGGAGAG+TGG | + | chr6_4:1209333-1209352 | None:intergenic | 50.0% |
| GTTCTTACAAACCCCCGTGA+TGG | + | chr6_4:1210666-1210685 | None:intergenic | 50.0% | |
| GCTTTCGTCAATGCGGTTTC+AGG | + | chr6_4:1210903-1210922 | None:intergenic | 50.0% | |
| !! | GTTACTGACTCGACTGGCTT+TGG | + | chr6_4:1210930-1210949 | None:intergenic | 50.0% |
| TGGGATGAGATGTGTGTGGT+GGG | - | chr6_4:1211094-1211113 | Msa0969790:CDS | 50.0% | |
| GTTTGGGCCCCAAATATCTG+AGG | - | chr6_4:1211165-1211184 | Msa0969790:CDS | 50.0% | |
| CACAGGGCCTCAGATATTTG+GGG | + | chr6_4:1211175-1211194 | None:intergenic | 50.0% | |
| GCACAGGGCCTCAGATATTT+GGG | + | chr6_4:1211176-1211195 | None:intergenic | 50.0% | |
| AGCACAGGGCCTCAGATATT+TGG | + | chr6_4:1211177-1211196 | None:intergenic | 50.0% | |
| CTTAGAGTGACTGATCGACG+AGG | + | chr6_4:1211449-1211468 | None:intergenic | 50.0% | |
| CCTGCAAACAGTTGAAGGGT+AGG | + | chr6_4:1212016-1212035 | None:intergenic | 50.0% | |
| CCTACCCTTCAACTGTTTGC+AGG | - | chr6_4:1212013-1212032 | Msa0969790:intron | 50.0% | |
| TGTTCGGGTGTAAAGAGCTC+TGG | + | chr6_4:1212116-1212135 | None:intergenic | 50.0% | |
| CTTTACACCCGAACAGCTTC+AGG | - | chr6_4:1212121-1212140 | Msa0969790:CDS | 50.0% | |
| ! | GGTGTTCGTGGAGTATTTGG+AGG | - | chr6_4:1212188-1212207 | Msa0969790:CDS | 50.0% |
| ATGCTTGCAAGACTGAGTGG+TGG | - | chr6_4:1212308-1212327 | Msa0969790:intron | 50.0% | |
| TGCTTGCAAGACTGAGTGGT+GGG | - | chr6_4:1212309-1212328 | Msa0969790:intron | 50.0% | |
| AAATAGAACAGGACCTGCGG+CGG | - | chr6_4:1213037-1213056 | Msa0969790:intron | 50.0% | |
| TCCTGAGGATCCAACTGCAA+TGG | - | chr6_4:1213071-1213090 | Msa0969790:intron | 50.0% | |
| AATGGCCAGCATCCAAAGAG+TGG | - | chr6_4:1213089-1213108 | Msa0969790:intron | 50.0% | |
| TTACTGACGGCTTGTCTCCA+CGG | + | chr6_4:1213167-1213186 | None:intergenic | 50.0% | |
| GGAATCAGATCCTGCTGAAC+AGG | - | chr6_4:1213209-1213228 | Msa0969790:intron | 50.0% | |
| !! | TCTAGCTCTTCCTGTTCAGC+AGG | + | chr6_4:1213222-1213241 | None:intergenic | 50.0% |
| !! | GATGGCTCTGATGAAGCTAG+AGG | - | chr6_4:1213564-1213583 | Msa0969790:intron | 50.0% |
| GCTCTGATGAAGCTAGAGGT+AGG | - | chr6_4:1213568-1213587 | Msa0969790:intron | 50.0% | |
| AAAGTAGGGGGAGAAGAGAG+AGG | - | chr6_4:1213598-1213617 | Msa0969790:intron | 50.0% | |
| AATGGTGGTCAGAGCAGACA+CGG | - | chr6_4:1213654-1213673 | Msa0969790:intron | 50.0% | |
| TGCAATGTGGGAGTCGGATT+TGG | - | chr6_4:1213749-1213768 | Msa0969790:intron | 50.0% | |
| AATGTGGGAGTCGGATTTGG+AGG | - | chr6_4:1213752-1213771 | Msa0969790:intron | 50.0% | |
| CACCAAAGAGTTTGAGAGGC+AGG | - | chr6_4:1213886-1213905 | Msa0969790:intron | 50.0% | |
| TCCCTGCCTCTCAAACTCTT+TGG | + | chr6_4:1213891-1213910 | None:intergenic | 50.0% | |
| CCATGGACACGGATTTAGTG+CGG | + | chr6_4:1213926-1213945 | None:intergenic | 50.0% | |
| !! | GCTAAAGGCATCCATGGACA+CGG | + | chr6_4:1213937-1213956 | None:intergenic | 50.0% |
| GTGTCCATGGATGCCTTTAG+CGG | - | chr6_4:1213936-1213955 | Msa0969790:intron | 50.0% | |
| !! | CAAACCGCTAAAGGCATCCA+TGG | + | chr6_4:1213943-1213962 | None:intergenic | 50.0% |
| CATGGATGCCTTTAGCGGTT+TGG | - | chr6_4:1213941-1213960 | Msa0969790:intron | 50.0% | |
| CCAGTCTTCCAAACCGCTAA+AGG | + | chr6_4:1213952-1213971 | None:intergenic | 50.0% | |
| ! | CCTTTAGCGGTTTGGAAGAC+TGG | - | chr6_4:1213949-1213968 | Msa0969790:intron | 50.0% |
| GACTGGATGTCCCAATCAGA+AGG | - | chr6_4:1213966-1213985 | Msa0969790:intron | 50.0% | |
| GATGTCCCAATCAGAAGGTG+AGG | - | chr6_4:1213971-1213990 | Msa0969790:intron | 50.0% | |
| GTCCTCCTCACCTTCTGATT+GGG | + | chr6_4:1213979-1213998 | None:intergenic | 50.0% | |
| AGTCCTCCTCACCTTCTGAT+TGG | + | chr6_4:1213980-1213999 | None:intergenic | 50.0% | |
| GGACTCAAGAGGTGGTGATA+AGG | - | chr6_4:1213995-1214014 | Msa0969790:intron | 50.0% | |
| TGAAGCTTGGGACAGTGACT+AGG | - | chr6_4:1214091-1214110 | Msa0969790:intron | 50.0% | |
| TCAGAAACCACACACGACTC+TGG | - | chr6_4:1214208-1214227 | Msa0969790:intron | 50.0% | |
| TACACTTCCAGAGTCGTGTG+TGG | + | chr6_4:1214218-1214237 | None:intergenic | 50.0% | |
| GTTACCTCCTCAACTCCTCA+AGG | - | chr6_4:1214437-1214456 | Msa0969790:CDS | 50.0% | |
| AGAACCTTGAGGAGTTGAGG+AGG | + | chr6_4:1214444-1214463 | None:intergenic | 50.0% | |
| GCGTCGGAAGGAGAAGAGAA+GGG | + | chr6_4:1209299-1209318 | None:intergenic | 55.0% | |
| TGCGTCGGAAGGAGAAGAGA+AGG | + | chr6_4:1209300-1209319 | None:intergenic | 55.0% | |
| AAATGGCGGCAGTGAGGATG+AGG | + | chr6_4:1209371-1209390 | None:intergenic | 55.0% | |
| CGTTGACATTCCCCGACACA+AGG | + | chr6_4:1209885-1209904 | None:intergenic | 55.0% | |
| CGGGGAATGTCAACGATGAG+AGG | - | chr6_4:1209890-1209909 | Msa0969790:intron | 55.0% | |
| !! | GCATGGGTTACTGACTCGAC+TGG | + | chr6_4:1210936-1210955 | None:intergenic | 55.0% |
| TCGGTGGGATGAGATGTGTG+TGG | - | chr6_4:1211090-1211109 | Msa0969790:CDS | 55.0% | |
| GTGGGATGAGATGTGTGTGG+TGG | - | chr6_4:1211093-1211112 | Msa0969790:CDS | 55.0% | |
| GGGATGAGATGTGTGTGGTG+GGG | - | chr6_4:1211095-1211114 | Msa0969790:CDS | 55.0% | |
| GGATGAGATGTGTGTGGTGG+GGG | - | chr6_4:1211096-1211115 | Msa0969790:CDS | 55.0% | |
| ! | AGATGTGTGTGGTGGGGGAA+GGG | - | chr6_4:1211101-1211120 | Msa0969790:CDS | 55.0% |
| GTAGGCTGAGCTACAGCACA+GGG | + | chr6_4:1211191-1211210 | None:intergenic | 55.0% | |
| TGTAGGCTGAGCTACAGCAC+AGG | + | chr6_4:1211192-1211211 | None:intergenic | 55.0% | |
| TGCTGTAGCTCAGCCTACAC+AGG | - | chr6_4:1211193-1211212 | Msa0969790:CDS | 55.0% | |
| GAACTTGCCCCATTTCGCAC+AGG | + | chr6_4:1211594-1211613 | None:intergenic | 55.0% | |
| !! | AAGAGCTCTGGATCATGCCG+TGG | + | chr6_4:1212104-1212123 | None:intergenic | 55.0% |
| GCGGATGGGAGTAAATCCTG+AGG | - | chr6_4:1213056-1213075 | Msa0969790:intron | 55.0% | |
| GCCATTGCAGTTGGATCCTC+AGG | + | chr6_4:1213075-1213094 | None:intergenic | 55.0% | |
| TGGATGCTGGCCATTGCAGT+TGG | + | chr6_4:1213084-1213103 | None:intergenic | 55.0% | |
| GGAAGCCACTCTTTGGATGC+TGG | + | chr6_4:1213097-1213116 | None:intergenic | 55.0% | |
| CTATCGGCAGTCCGATGCTT+GGG | + | chr6_4:1213441-1213460 | None:intergenic | 55.0% | |
| GACGACGATGAGTGGCATCA+TGG | - | chr6_4:1213504-1213523 | Msa0969790:intron | 55.0% | |
| AGCAGCAGCAGCGATGATGA+GGG | - | chr6_4:1213822-1213841 | Msa0969790:intron | 55.0% | |
| AGTTTGAGAGGCAGGGAAGC+AGG | - | chr6_4:1213894-1213913 | Msa0969790:intron | 55.0% | |
| CCGCACTAAATCCGTGTCCA+TGG | - | chr6_4:1213923-1213942 | Msa0969790:intron | 55.0% | |
| GTCCCAATCAGAAGGTGAGG+AGG | - | chr6_4:1213974-1213993 | Msa0969790:intron | 55.0% | |
| GAAGGTGAGGAGGACTCAAG+AGG | - | chr6_4:1213984-1214003 | Msa0969790:intron | 55.0% | |
| AGCCACGGCAAATAGGCGTT+GGG | + | chr6_4:1214637-1214656 | None:intergenic | 55.0% | |
| AAGCCACGGCAAATAGGCGT+TGG | + | chr6_4:1214638-1214657 | None:intergenic | 55.0% | |
| ! | AGTGGCGGAGCAAAGTGCGT+CGG | + | chr6_4:1209315-1209334 | None:intergenic | 60.0% |
| ! | GCGGAGGGAGTTGATTACGG+AGG | + | chr6_4:1209340-1209359 | None:intergenic | 60.0% |
| ! | GCGGCGGAGGGAGTTGATTA+CGG | + | chr6_4:1209343-1209362 | None:intergenic | 60.0% |
| CAGTGAGGATGAGGATGGCG+CGG | + | chr6_4:1209362-1209381 | None:intergenic | 60.0% | |
| GGAGGAAAATGGCGGCAGTG+AGG | + | chr6_4:1209377-1209396 | None:intergenic | 60.0% | |
| ! | GAGATGTGTGTGGTGGGGGA+AGG | - | chr6_4:1211100-1211119 | Msa0969790:CDS | 60.0% |
| AGCTCAGCCTACACAGGCAC+AGG | - | chr6_4:1211199-1211218 | Msa0969790:CDS | 60.0% | |
| GCTCAGCCTACACAGGCACA+GGG | - | chr6_4:1211200-1211219 | Msa0969790:CDS | 60.0% | |
| ! | ATTGAGAAGCACGGTGGGGC+CGG | + | chr6_4:1211226-1211245 | None:intergenic | 60.0% |
| TCTGGATCATGCCGTGGTGG+AGG | + | chr6_4:1212098-1212117 | None:intergenic | 60.0% | |
| !! | AGCTCTGGATCATGCCGTGG+TGG | + | chr6_4:1212101-1212120 | None:intergenic | 60.0% |
| GATTTACTCCCATCCGCCGC+AGG | + | chr6_4:1213053-1213072 | None:intergenic | 60.0% | |
| GCTATCGGCAGTCCGATGCT+TGG | + | chr6_4:1213442-1213461 | None:intergenic | 60.0% | |
| ACGACGACGACGACGATGAG+TGG | - | chr6_4:1213496-1213515 | Msa0969790:intron | 60.0% | |
| GAGCAGCAGCAGCGATGATG+AGG | - | chr6_4:1213821-1213840 | Msa0969790:intron | 60.0% | |
| GGTGAGGAGGACTCAAGAGG+TGG | - | chr6_4:1213987-1214006 | Msa0969790:intron | 60.0% | |
| GTCCCAACGCCTATTTGCCG+TGG | - | chr6_4:1214632-1214651 | Msa0969790:intron | 60.0% | |
| GCGGAGCAAAGTGCGTCGGA+AGG | + | chr6_4:1209311-1209330 | None:intergenic | 65.0% | |
| TGAGGATGAGGATGGCGCGG+CGG | + | chr6_4:1209359-1209378 | None:intergenic | 65.0% | |
| GGCGGCAGTGAGGATGAGGA+TGG | + | chr6_4:1209367-1209386 | None:intergenic | 65.0% | |
| AGCCTACACAGGCACAGGGC+CGG | - | chr6_4:1211204-1211223 | Msa0969790:CDS | 65.0% | |
| TACCGGAGCTGCCTCCACCA+CGG | - | chr6_4:1212084-1212103 | Msa0969790:CDS | 65.0% | |
| AGAACAGGACCTGCGGCGGA+TGG | - | chr6_4:1213041-1213060 | Msa0969790:intron | 65.0% | |
| GAACAGGACCTGCGGCGGAT+GGG | - | chr6_4:1213042-1213061 | Msa0969790:intron | 65.0% | |
| GATGAGGATGGCGCGGCGGA+GGG | + | chr6_4:1209355-1209374 | None:intergenic | 70.0% | |
| ! | TGCCGTGGTGGAGGCAGCTC+CGG | + | chr6_4:1212089-1212108 | None:intergenic | 70.0% |
| GGATGAGGATGGCGCGGCGG+AGG | + | chr6_4:1209356-1209375 | None:intergenic | 75.0% | |
| GGCCGGCCCTGTGCCTGTGT+AGG | + | chr6_4:1211209-1211228 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1209276 | 1215036 | 1209276 | ID=Msa0969790;Name=Msa0969790 |
| chr6_4 | mRNA | 1209276 | 1215036 | 1209276 | ID=Msa0969790-mRNA-1;Parent=Msa0969790;Name=Msa0969790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|0.8|0.66|1|0.4|0.16|6|378|625 |
| chr6_4 | exon | 1209276 | 1209366 | 1209276 | ID=Msa0969790-mRNA-1:exon:683;Parent=Msa0969790-mRNA-1 |
| chr6_4 | exon | 1209913 | 1211333 | 1209913 | ID=Msa0969790-mRNA-1:exon:682;Parent=Msa0969790-mRNA-1 |
| chr6_4 | exon | 1211876 | 1212028 | 1211876 | ID=Msa0969790-mRNA-1:exon:681;Parent=Msa0969790-mRNA-1 |
| chr6_4 | exon | 1212053 | 1212277 | 1212053 | ID=Msa0969790-mRNA-1:exon:680;Parent=Msa0969790-mRNA-1 |
| chr6_4 | exon | 1214264 | 1214546 | 1214264 | ID=Msa0969790-mRNA-1:exon:679;Parent=Msa0969790-mRNA-1 |
| chr6_4 | exon | 1214783 | 1215036 | 1214783 | ID=Msa0969790-mRNA-1:exon:678;Parent=Msa0969790-mRNA-1 |
| chr6_4 | five_prime_UTR | 1214866 | 1215036 | 1214866 | ID=Msa0969790-mRNA-1:five_prime_utr;Parent=Msa0969790-mRNA-1 |
| chr6_4 | CDS | 1214783 | 1214865 | 1214783 | ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1 |
| chr6_4 | CDS | 1214264 | 1214546 | 1214264 | ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1 |
| chr6_4 | CDS | 1212053 | 1212277 | 1212053 | ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1 |
| chr6_4 | CDS | 1211876 | 1212028 | 1211876 | ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1 |
| chr6_4 | CDS | 1210200 | 1211333 | 1210200 | ID=Msa0969790-mRNA-1:cds;Parent=Msa0969790-mRNA-1 |
| chr6_4 | three_prime_UTR | 1209913 | 1210199 | 1209913 | ID=Msa0969790-mRNA-1:three_prime_utr;Parent=Msa0969790-mRNA-1 |
| chr6_4 | three_prime_UTR | 1209276 | 1209366 | 1209276 | ID=Msa0969790-mRNA-1:three_prime_utr;Parent=Msa0969790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
