Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969630 | XP_013450735.1 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969630 | sp|Q9LT57|CFM9_ARATH | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.15e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969630 | A0A072U6I9 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0969630 | 0.808270 | 3.363257e-50 | -8.615850e-47 |
| Msa0047160 | Msa0969630 | 0.801021 | 1.096024e-48 | -8.615850e-47 |
| Msa0047980 | Msa0969630 | 0.807709 | 4.427039e-50 | -8.615850e-47 |
| Msa0094470 | Msa0969630 | 0.823534 | 1.315311e-53 | -8.615850e-47 |
| Msa0692830 | Msa0969630 | 0.803474 | 3.426395e-49 | -8.615850e-47 |
| Msa0698060 | Msa0969630 | 0.801397 | 9.178549e-49 | -8.615850e-47 |
| Msa0698540 | Msa0969630 | 0.810020 | 1.418244e-50 | -8.615850e-47 |
| Msa0709500 | Msa0969630 | 0.806877 | 6.643765e-50 | -8.615850e-47 |
| Msa0711780 | Msa0969630 | 0.804919 | 1.714456e-49 | -8.615850e-47 |
| Msa0726830 | Msa0969630 | 0.805941 | 1.046973e-49 | -8.615850e-47 |
| Msa0726860 | Msa0969630 | 0.802949 | 4.399972e-49 | -8.615850e-47 |
| Msa0750430 | Msa0969630 | 0.835056 | 2.094894e-56 | -8.615850e-47 |
| Msa0786270 | Msa0969630 | 0.803106 | 4.082993e-49 | -8.615850e-47 |
| Msa0787750 | Msa0969630 | 0.806809 | 6.868414e-50 | -8.615850e-47 |
| Msa0790850 | Msa0969630 | 0.808277 | 3.352453e-50 | -8.615850e-47 |
| Msa0794670 | Msa0969630 | 0.806680 | 7.314981e-50 | -8.615850e-47 |
| Msa0129060 | Msa0969630 | 0.810108 | 1.357982e-50 | -8.615850e-47 |
| Msa0137840 | Msa0969630 | 0.804441 | 2.156571e-49 | -8.615850e-47 |
| Msa0159180 | Msa0969630 | 0.809522 | 1.815266e-50 | -8.615850e-47 |
| Msa0366890 | Msa0969630 | 0.801380 | 9.252465e-49 | -8.615850e-47 |
| Msa0376690 | Msa0969630 | 0.805426 | 1.342791e-49 | -8.615850e-47 |
| Msa0385580 | Msa0969630 | 0.806559 | 7.755097e-50 | -8.615850e-47 |
| Msa0422400 | Msa0969630 | 0.811612 | 6.418003e-51 | -8.615850e-47 |
| Msa0458060 | Msa0969630 | 0.817155 | 3.818833e-52 | -8.615850e-47 |
| Msa0471590 | Msa0969630 | 0.803246 | 3.821024e-49 | -8.615850e-47 |
| Msa0473990 | Msa0969630 | 0.815796 | 7.695257e-52 | -8.615850e-47 |
| Msa0474950 | Msa0969630 | 0.803311 | 3.703560e-49 | -8.615850e-47 |
| Msa0345350 | Msa0969630 | 0.804277 | 2.333072e-49 | -8.615850e-47 |
| Msa0345390 | Msa0969630 | 0.818820 | 1.605894e-52 | -8.615850e-47 |
| Msa0485120 | Msa0969630 | 0.823023 | 1.731318e-53 | -8.615850e-47 |
| Msa0842830 | Msa0969630 | 0.823629 | 1.249394e-53 | -8.615850e-47 |
| Msa0847080 | Msa0969630 | 0.804384 | 2.217194e-49 | -8.615850e-47 |
| Msa0900110 | Msa0969630 | 0.805709 | 1.171253e-49 | -8.615850e-47 |
| Msa0926460 | Msa0969630 | 0.801525 | 8.642210e-49 | -8.615850e-47 |
| Msa0969340 | Msa0969630 | 0.887044 | 2.015965e-72 | -8.615850e-47 |
| Msa0969630 | Msa1051200 | 0.804446 | 2.151963e-49 | -8.615850e-47 |
| Msa0969630 | Msa1119200 | 0.817905 | 2.587719e-52 | -8.615850e-47 |
| Msa0969630 | Msa1137700 | 0.809156 | 2.174702e-50 | -8.615850e-47 |
| Msa0969630 | Msa1171360 | 0.804405 | 2.194692e-49 | -8.615850e-47 |
| Msa0969630 | Msa1179950 | 0.800682 | 1.285160e-48 | -8.615850e-47 |
| Msa0969630 | Msa1209760 | 0.824739 | 6.857694e-54 | -8.615850e-47 |
| Msa0969630 | Msa1370740 | 0.817914 | 2.575881e-52 | -8.615850e-47 |
| Msa0969630 | Msa1394290 | 0.826389 | 2.786469e-54 | -8.615850e-47 |
| Msa0969630 | Msa1443780 | 0.802842 | 4.630693e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969630 | MtrunA17_Chr6g0449261 | 92.779 | 637 | 37 | 3 | 1 | 634 | 1 | 631 | 0.0 | 1117 |
| Msa0969630 | MtrunA17_Chr4g0067911 | 49.704 | 169 | 85 | 0 | 113 | 281 | 161 | 329 | 2.04e-45 | 164 |
| Msa0969630 | MtrunA17_Chr1g0171521 | 51.634 | 153 | 72 | 1 | 110 | 260 | 116 | 268 | 2.58e-42 | 154 |
| Msa0969630 | MtrunA17_Chr4g0033621 | 44.970 | 169 | 93 | 0 | 113 | 281 | 134 | 302 | 4.54e-40 | 152 |
| Msa0969630 | MtrunA17_Chr8g0391361 | 48.611 | 144 | 74 | 0 | 113 | 256 | 7 | 150 | 3.74e-37 | 136 |
| Msa0969630 | MtrunA17_Chr6g0484411 | 32.701 | 211 | 128 | 5 | 77 | 284 | 557 | 756 | 4.34e-23 | 104 |
| Msa0969630 | MtrunA17_Chr1g0187011 | 31.925 | 213 | 127 | 6 | 77 | 284 | 566 | 765 | 5.46e-23 | 104 |
| Msa0969630 | MtrunA17_Chr6g0451621 | 35.593 | 177 | 106 | 3 | 114 | 284 | 518 | 692 | 1.54e-21 | 99.8 |
| Msa0969630 | MtrunA17_Chr2g0330811 | 37.500 | 128 | 72 | 2 | 148 | 272 | 593 | 715 | 9.34e-18 | 87.4 |
| Msa0969630 | MtrunA17_Chr4g0071101 | 28.293 | 205 | 140 | 3 | 89 | 290 | 531 | 731 | 3.54e-17 | 85.5 |
| Msa0969630 | MtrunA17_Chr8g0391141 | 30.851 | 188 | 120 | 4 | 74 | 258 | 412 | 592 | 1.28e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969630 | AT3G27550.2 | 71.756 | 393 | 96 | 6 | 1 | 385 | 1 | 386 | 4.84e-164 | 481 |
| Msa0969630 | AT3G27550.3 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.23e-163 | 476 |
| Msa0969630 | AT3G27550.1 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.23e-163 | 476 |
| Msa0969630 | AT3G25440.2 | 45.918 | 196 | 104 | 1 | 96 | 289 | 57 | 252 | 2.68e-47 | 171 |
| Msa0969630 | AT3G25440.1 | 45.918 | 196 | 104 | 1 | 96 | 289 | 121 | 316 | 1.54e-46 | 171 |
| Msa0969630 | AT2G28480.1 | 46.857 | 175 | 93 | 0 | 107 | 281 | 119 | 293 | 7.25e-44 | 161 |
| Msa0969630 | AT3G25440.4 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969630 | AT3G25440.3 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969630 | AT3G25440.5 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 3.86e-42 | 154 |
| Msa0969630 | AT4G13070.1 | 45.128 | 195 | 97 | 3 | 78 | 268 | 111 | 299 | 1.87e-40 | 151 |
| Msa0969630 | AT3G18390.1 | 35.106 | 188 | 109 | 4 | 100 | 284 | 611 | 788 | 1.63e-25 | 112 |
| Msa0969630 | AT3G23070.1 | 36.000 | 175 | 99 | 3 | 90 | 261 | 586 | 750 | 6.74e-23 | 104 |
| Msa0969630 | AT4G14510.1 | 32.812 | 192 | 116 | 3 | 90 | 278 | 613 | 794 | 2.35e-22 | 102 |
| Msa0969630 | AT3G01370.1 | 37.143 | 140 | 85 | 1 | 148 | 284 | 575 | 714 | 3.76e-22 | 102 |
| Msa0969630 | AT4G29750.1 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 4.52e-21 | 98.6 |
| Msa0969630 | AT4G29750.2 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 6.65e-21 | 98.2 |
| Msa0969630 | AT5G16180.1 | 31.795 | 195 | 118 | 5 | 111 | 290 | 523 | 717 | 1.45e-16 | 84.0 |
Find 202 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCAATTATCATAAAAT+TGG | 0.183076 | 6_4:-1089052 | None:intergenic |
| CCTTTGGTGATCTCTTCTTA+TGG | 0.210452 | 6_4:-1088703 | None:intergenic |
| GTTGGTGTTCGTGGAGTATT+TGG | 0.242614 | 6_4:+1086852 | Msa0969630:CDS |
| AAGAGTCTGGTAAAACATTA+AGG | 0.251609 | 6_4:+1084339 | Msa0969630:CDS |
| TTGTTCAGATGTGTACTTTA+GGG | 0.259867 | 6_4:+1088897 | Msa0969630:three_prime_UTR |
| TTCAGCTTCATATTCTTTAT+CGG | 0.273368 | 6_4:-1087910 | None:intergenic |
| TGCAATGTGGGAGTCGGATT+TGG | 0.290486 | 6_4:+1088391 | Msa0969630:CDS |
| CATTTCTTTAATTCTTTCCT+TGG | 0.291251 | 6_4:-1086946 | None:intergenic |
| TCCCTGCCTCTCAAACTCTT+TGG | 0.295275 | 6_4:-1088530 | None:intergenic |
| TTTGTTCAGATGTGTACTTT+AGG | 0.300577 | 6_4:+1088896 | Msa0969630:three_prime_UTR |
| ACACTGAACATTGTTTCTTT+TGG | 0.305301 | 6_4:-1083827 | None:intergenic |
| ATAATTGAATTCCAATGTTA+TGG | 0.314295 | 6_4:+1089063 | Msa0969630:three_prime_UTR |
| CTCTTTGTAAGGGTATTAAT+AGG | 0.314891 | 6_4:-1087077 | None:intergenic |
| CAAGCTTCATCAGCTTCCTT+TGG | 0.315883 | 6_4:-1088719 | None:intergenic |
| AGTTTGGAAGACTTAGATAT+TGG | 0.318025 | 6_4:+1087952 | Msa0969630:CDS |
| ATTGGCAATGGTCAAGTTAA+TGG | 0.324195 | 6_4:+1088278 | Msa0969630:CDS |
| AGCTAAATTTAGGACGAATA+TGG | 0.330496 | 6_4:+1088322 | Msa0969630:CDS |
| AGTCCTCCTCACCTTCTGAT+TGG | 0.334499 | 6_4:-1088619 | None:intergenic |
| TTCAGAAATGTTGTGCCTTT+AGG | 0.335105 | 6_4:+1084149 | Msa0969630:intron |
| ATTTCTTTAATTCTTTCCTT+GGG | 0.340101 | 6_4:-1086945 | None:intergenic |
| TTCAAGAGCTTGCTCAAATC+TGG | 0.345605 | 6_4:-1087631 | None:intergenic |
| ATCTTACCTTCCTCTTTGTA+AGG | 0.348042 | 6_4:-1087088 | None:intergenic |
| CTTTACACCCGAACAGCTTC+AGG | 0.349585 | 6_4:+1086788 | Msa0969630:CDS |
| CCTTTAGCGGTTTGGAAGAC+TGG | 0.351247 | 6_4:+1088591 | Msa0969630:CDS |
| CTCAAATCTGGCCTTGAATA+GGG | 0.356118 | 6_4:-1087619 | None:intergenic |
| TGCTCTATTCCTTGTCCTAA+AGG | 0.362024 | 6_4:-1084164 | None:intergenic |
| TTTATACGCCTGAAGCTGTT+CGG | 0.362329 | 6_4:-1086796 | None:intergenic |
| GCTCAAATCTGGCCTTGAAT+AGG | 0.363277 | 6_4:-1087620 | None:intergenic |
| CATGGATGCCTTTAGCGGTT+TGG | 0.367845 | 6_4:+1088583 | Msa0969630:CDS |
| AAGTTGAAAGAGAGATGAAA+TGG | 0.367950 | 6_4:-1083882 | None:intergenic |
| TTATACGCCTGAAGCTGTTC+GGG | 0.370216 | 6_4:-1086795 | None:intergenic |
| AACTTCAATCCAATCTCTTC+AGG | 0.372514 | 6_4:+1083900 | Msa0969630:CDS |
| AGAAAGTGGAAGCCACTCTT+TGG | 0.372764 | 6_4:-1087740 | None:intergenic |
| GATTCCTCCAAACCATCATT+AGG | 0.373992 | 6_4:-1087831 | None:intergenic |
| ACTCATTCTTCAAACTGAAA+AGG | 0.379691 | 6_4:-1083788 | None:intergenic |
| GTCCTCCTCACCTTCTGATT+GGG | 0.380053 | 6_4:-1088618 | None:intergenic |
| GCCATTGCAGTTGGATCCTC+AGG | 0.380404 | 6_4:-1087711 | None:intergenic |
| ACTTCCATCTTTCTTGTCAA+TGG | 0.383828 | 6_4:-1087769 | None:intergenic |
| GCCAAAGAAAAGGAAGAGTT+TGG | 0.388346 | 6_4:+1087936 | Msa0969630:CDS |
| GGAATCAGATCCTGCTGAAC+AGG | 0.388918 | 6_4:+1087848 | Msa0969630:CDS |
| TGTGTACACCGAAGTTATTT+AGG | 0.399084 | 6_4:+1088947 | Msa0969630:three_prime_UTR |
| AAGGGTTTACCTGAAGAGAT+TGG | 0.402994 | 6_4:-1083909 | None:intergenic |
| CTCATTCTTCAAACTGAAAA+GGG | 0.414892 | 6_4:-1083787 | None:intergenic |
| GACACGGTGAAGCTAAATTT+AGG | 0.418116 | 6_4:+1088312 | Msa0969630:CDS |
| CTATCGGCAGTCCGATGCTT+GGG | 0.419822 | 6_4:-1088077 | None:intergenic |
| AATAGAACCTAATGATGGTT+TGG | 0.420274 | 6_4:+1087824 | Msa0969630:CDS |
| AATACTCCACGAACACCAAC+TGG | 0.421248 | 6_4:-1086849 | None:intergenic |
| TATGTTCCAGTTGGTGTTCG+TGG | 0.423683 | 6_4:+1086843 | Msa0969630:CDS |
| GAGAGATGAAATGGGTTTGA+GGG | 0.425769 | 6_4:-1083873 | None:intergenic |
| AGAGAGATGAAATGGGTTTG+AGG | 0.426459 | 6_4:-1083874 | None:intergenic |
| CACCAAAGAGTTTGAGAGGC+AGG | 0.427775 | 6_4:+1088528 | Msa0969630:CDS |
| AACCAATCAACAATTTCTTC+AGG | 0.430070 | 6_4:-1088988 | None:intergenic |
| AGTTTGAGAGGCAGGGAAGC+AGG | 0.434357 | 6_4:+1088536 | Msa0969630:CDS |
| GCTAAATTTAGGACGAATAT+GGG | 0.439861 | 6_4:+1088323 | Msa0969630:CDS |
| AACAATAAAAGCTATCGTTA+TGG | 0.440253 | 6_4:-1084217 | None:intergenic |
| TGCCGTGGTGGAGGCAGCTC+CGG | 0.440666 | 6_4:-1086753 | None:intergenic |
| TTTGAATGGATCCTTGTGTC+GGG | 0.442400 | 6_4:+1084259 | Msa0969630:CDS |
| AGAAGAATGCAGAAAGAGTC+TGG | 0.444428 | 6_4:+1084326 | Msa0969630:CDS |
| CAAGGAAAGAATTAAAGAAA+TGG | 0.444685 | 6_4:+1086947 | Msa0969630:CDS |
| AAATGGCGGCAGTGAGGATA+AGG | 0.446224 | 6_4:-1083760 | None:intergenic |
| AGGATAAATAATACAAGTAT+TGG | 0.447491 | 6_4:+1088260 | Msa0969630:CDS |
| GAGGTAGGTTCAAGGAAAGT+AGG | 0.447947 | 6_4:+1088225 | Msa0969630:CDS |
| CAAAGGAAGCTGATGAAGCT+TGG | 0.453830 | 6_4:+1088720 | Msa0969630:CDS |
| AGGTTAGAGGCTCAAGAGTT+CGG | 0.454485 | 6_4:+1088042 | Msa0969630:CDS |
| GGATAAGGATGGCGCGGCGG+AGG | 0.456392 | 6_4:-1083745 | None:intergenic |
| TATTGGAACAGAGAAGAGTA+TGG | 0.456496 | 6_4:+1087969 | Msa0969630:CDS |
| GCGGCGGAGGGAGTTGATTA+CGG | 0.461896 | 6_4:-1083732 | None:intergenic |
| GACTATGATGGTGAGGTTAG+AGG | 0.468968 | 6_4:+1088029 | Msa0969630:CDS |
| AAACTGAAAAGGGAGGAAAA+TGG | 0.471915 | 6_4:-1083777 | None:intergenic |
| AGTTGAAAGAGAGATGAAAT+GGG | 0.472804 | 6_4:-1083881 | None:intergenic |
| GTAGAAGAGAAGGGTTTCAA+GGG | 0.475423 | 6_4:-1083679 | None:intergenic |
| TGCCTGAAGAAATTGTTGAT+TGG | 0.477215 | 6_4:+1088986 | Msa0969630:three_prime_UTR |
| TCTGGATCATGCCGTGGTGG+AGG | 0.477830 | 6_4:-1086762 | None:intergenic |
| AAAGGAAGCTGATGAAGCTT+GGG | 0.481393 | 6_4:+1088721 | Msa0969630:CDS |
| TTATATACAGGCCCTATTCA+AGG | 0.481490 | 6_4:+1087608 | Msa0969630:intron |
| GGTGTTCGTGGAGTATTTGG+AGG | 0.482666 | 6_4:+1086855 | Msa0969630:CDS |
| TGGATGCTGGCCATTGCAGT+TGG | 0.483571 | 6_4:-1087720 | None:intergenic |
| AGTAGAAGAGAAGGGTTTCA+AGG | 0.484196 | 6_4:-1083680 | None:intergenic |
| ATTCTGGTATAGCATTTACT+TGG | 0.484390 | 6_4:-1088756 | None:intergenic |
| CCAGTCTTCCAAACCGCTAA+AGG | 0.489203 | 6_4:-1088591 | None:intergenic |
| AAACATAAAGAAAATAGAAC+AGG | 0.489664 | 6_4:+1087665 | Msa0969630:CDS |
| AGAGTCTGGTAAAACATTAA+GGG | 0.491117 | 6_4:+1084340 | Msa0969630:CDS |
| CACATATAATTCCATAACAT+TGG | 0.494202 | 6_4:-1089074 | None:intergenic |
| GGAAGCCACTCTTTGGATGC+TGG | 0.495190 | 6_4:-1087733 | None:intergenic |
| AGGTAGGTTCAAGGAAAGTA+GGG | 0.497194 | 6_4:+1088226 | Msa0969630:CDS |
| AGCTGAAGAGGCCAAAGAAA+AGG | 0.499259 | 6_4:+1087926 | Msa0969630:CDS |
| CCCTACAAGTCAAAATAGTA+AGG | 0.500263 | 6_4:+1088664 | Msa0969630:CDS |
| GGACTCAAGAGGTGGTGATA+AGG | 0.500654 | 6_4:+1088637 | Msa0969630:CDS |
| AATGCCATTGACAAGAAAGA+TGG | 0.502487 | 6_4:+1087765 | Msa0969630:CDS |
| AGAACAGGACCTGCGGCGGA+TGG | 0.509673 | 6_4:+1087680 | Msa0969630:CDS |
| TCAGAAACCACACACGACTC+TGG | 0.510038 | 6_4:+1088850 | Msa0969630:three_prime_UTR |
| GATCCATTCAAAAGATTCAA+CGG | 0.510157 | 6_4:-1084248 | None:intergenic |
| TGTTCGGGTGTAAAGAGCTC+TGG | 0.511414 | 6_4:-1086780 | None:intergenic |
| GATAAGGATGGCGCGGCGGA+GGG | 0.512390 | 6_4:-1083744 | None:intergenic |
| ACTATCGGCAGTCCGATGCT+TGG | 0.513686 | 6_4:-1088078 | None:intergenic |
| GAGCAGCAGCAGCGATGATG+AGG | 0.514342 | 6_4:+1088463 | Msa0969630:CDS |
| TCTAGCTCTTCCTGTTCAGC+AGG | 0.518776 | 6_4:-1087858 | None:intergenic |
| TTGTCTCCACGGTTAACATA+AGG | 0.519546 | 6_4:-1087792 | None:intergenic |
| GACGATGGTGAGTGGCATCA+TGG | 0.520485 | 6_4:+1088146 | Msa0969630:CDS |
| GTGTCCATGGATGCCTTTAG+CGG | 0.520678 | 6_4:+1088578 | Msa0969630:CDS |
| AATGTGGGAGTCGGATTTGG+AGG | 0.524703 | 6_4:+1088394 | Msa0969630:CDS |
| CTGAACAGGAAGAGCTAGAT+CGG | 0.526672 | 6_4:+1087862 | Msa0969630:CDS |
| TGCAAAATATGCATCTCCAT+TGG | 0.528015 | 6_4:+1086883 | Msa0969630:CDS |
| GCTTAAGAAATATGAGCTAC+CGG | 0.528659 | 6_4:+1086734 | Msa0969630:CDS |
| TGAAGCTAGAGGTAGGTTCA+AGG | 0.529177 | 6_4:+1088217 | Msa0969630:CDS |
| GTCAATGGCATTGAAGAAAG+TGG | 0.531512 | 6_4:-1087754 | None:intergenic |
| CCGCACTAAATCCGTGTCCA+TGG | 0.531564 | 6_4:+1088565 | Msa0969630:CDS |
| TGCGTCGGAAGTAGAAGAGA+AGG | 0.532772 | 6_4:-1083689 | None:intergenic |
| AACAAGAATTATGTTCCAGT+TGG | 0.532863 | 6_4:+1086834 | Msa0969630:CDS |
| TCTTACCTTCCTCTTTGTAA+GGG | 0.535231 | 6_4:-1087087 | None:intergenic |
| GAACAGGACCTGCGGCGGAT+GGG | 0.538425 | 6_4:+1087681 | Msa0969630:CDS |
| TAGAAGAGAAGGGTTTCAAG+GGG | 0.539623 | 6_4:-1083678 | None:intergenic |
| GATTTACTCCCATCCGCCGC+AGG | 0.541197 | 6_4:-1087689 | None:intergenic |
| TTACTGACGGCTTGTCTCCA+CGG | 0.541347 | 6_4:-1087803 | None:intergenic |
| AGAACCTAATGATGGTTTGG+AGG | 0.543260 | 6_4:+1087827 | Msa0969630:CDS |
| CGAAGTTGAAAATGCAATGT+GGG | 0.549326 | 6_4:+1088379 | Msa0969630:CDS |
| CAAACCGCTAAAGGCATCCA+TGG | 0.549768 | 6_4:-1088582 | None:intergenic |
| ACCGAAGTTATTTAGGTGGG+TGG | 0.551390 | 6_4:+1088954 | Msa0969630:three_prime_UTR |
| TGGTTGAAACAAAATCATCA+AGG | 0.553592 | 6_4:+1089006 | Msa0969630:three_prime_UTR |
| CCCACCCACCTAAATAACTT+CGG | 0.554815 | 6_4:-1088955 | None:intergenic |
| ATTCTCTTCATCGTCACTAT+CGG | 0.555645 | 6_4:-1088093 | None:intergenic |
| TGAAGCTTGGGACAGTGACT+AGG | 0.557695 | 6_4:+1088733 | Msa0969630:CDS |
| GCTGTCAACATCACTGTCAT+CGG | 0.559876 | 6_4:-1088177 | None:intergenic |
| AATGTTGTGCCTTTAGGACA+AGG | 0.561411 | 6_4:+1084155 | Msa0969630:CDS |
| TAAAGAATATGAAGCTGAAG+AGG | 0.562743 | 6_4:+1087914 | Msa0969630:CDS |
| TGGAACAGAGAAGAGTATGG+TGG | 0.564267 | 6_4:+1087972 | Msa0969630:CDS |
| TTTCTTTAATTCTTTCCTTG+GGG | 0.565613 | 6_4:-1086944 | None:intergenic |
| AATGCACCAAAGAGTTTGAG+AGG | 0.565918 | 6_4:+1088524 | Msa0969630:CDS |
| TCATTAGGTTCTATTACTGA+CGG | 0.569181 | 6_4:-1087816 | None:intergenic |
| TCGGTTCATCGCTGATATAG+AGG | 0.570941 | 6_4:+1087881 | Msa0969630:CDS |
| TGAAAATGCAATGTGGGAGT+CGG | 0.574987 | 6_4:+1088385 | Msa0969630:CDS |
| CGGGGAATGTCAACGATGAG+AGG | 0.581892 | 6_4:+1084278 | Msa0969630:CDS |
| TCAGTAATAGAACCTAATGA+TGG | 0.582255 | 6_4:+1087819 | Msa0969630:CDS |
| TGTTTGACAATCAGAACGGA+TGG | 0.583072 | 6_4:+1088800 | Msa0969630:three_prime_UTR |
| AGCTTCATATTCTTTATCGG+CGG | 0.584618 | 6_4:-1087907 | None:intergenic |
| AACTTATGACTGACGAGGAG+CGG | 0.586837 | 6_4:+1084393 | Msa0969630:CDS |
| ACCAAAGAGTTTGAGAGGCA+GGG | 0.588416 | 6_4:+1088529 | Msa0969630:CDS |
| AATAATACAAGTATTGGCAA+TGG | 0.589479 | 6_4:+1088266 | Msa0969630:CDS |
| TCTAGAAATGATGACTATGA+TGG | 0.589821 | 6_4:+1088017 | Msa0969630:CDS |
| TCCTGAGGATCCAACTGCAA+TGG | 0.592648 | 6_4:+1087710 | Msa0969630:CDS |
| AGGAAAGAGTATGCGAAGCA+AGG | 0.594524 | 6_4:+1084298 | Msa0969630:CDS |
| TACACCGAAGTTATTTAGGT+GGG | 0.595132 | 6_4:+1088951 | Msa0969630:three_prime_UTR |
| CCGAAGTTATTTAGGTGGGT+GGG | 0.595385 | 6_4:+1088955 | Msa0969630:three_prime_UTR |
| GACTGGATGTCCCAATCAGA+AGG | 0.597113 | 6_4:+1088608 | Msa0969630:CDS |
| GGTTGAAACAAAATCATCAA+GGG | 0.600112 | 6_4:+1089007 | Msa0969630:three_prime_UTR |
| CGTTGACATTCCCCGACACA+AGG | 0.600701 | 6_4:-1084270 | None:intergenic |
| AGCAGCAGCAGCGATGATGA+GGG | 0.601546 | 6_4:+1088464 | Msa0969630:CDS |
| TGCTTGCAAGACTGAGTGGT+GGG | 0.602807 | 6_4:+1086976 | Msa0969630:CDS |
| TAATACCCTTACAAAGAGGA+AGG | 0.604277 | 6_4:+1087082 | Msa0969630:CDS |
| AGAATATACATCCCAAGCAT+CGG | 0.605468 | 6_4:+1088066 | Msa0969630:CDS |
| AAAACTATTACGATATTGAG+CGG | 0.607700 | 6_4:-1088501 | None:intergenic |
| CAGTCTCATGAAACTTCCAA+TGG | 0.613298 | 6_4:-1086899 | None:intergenic |
| GTAGGTTCAAGGAAAGTAGG+GGG | 0.613514 | 6_4:+1088228 | Msa0969630:CDS |
| TTGAATGGATCCTTGTGTCG+GGG | 0.613828 | 6_4:+1084260 | Msa0969630:CDS |
| AATGACTCGGTACATTTGAG+AGG | 0.617243 | 6_4:+1088419 | Msa0969630:CDS |
| AGCTCTGGATCATGCCGTGG+TGG | 0.620706 | 6_4:-1086765 | None:intergenic |
| ACTTTGTTTGACAATCAGAA+CGG | 0.621423 | 6_4:+1088796 | Msa0969630:three_prime_UTR |
| GATGGCTCTGATGAAGCTAG+AGG | 0.623735 | 6_4:+1088206 | Msa0969630:CDS |
| GTTGGCGGTAATTTCTACCA+CGG | 0.628009 | 6_4:-1087040 | None:intergenic |
| GATGTCCCAATCAGAAGGTG+AGG | 0.630183 | 6_4:+1088613 | Msa0969630:CDS |
| GTCCCAATCAGAAGGTGAGG+AGG | 0.630743 | 6_4:+1088616 | Msa0969630:CDS |
| CCATAAGAAGAGATCACCAA+AGG | 0.633775 | 6_4:+1088703 | Msa0969630:CDS |
| TTGTTGTGACAACTTCCCCA+AGG | 0.637735 | 6_4:+1086929 | Msa0969630:CDS |
| CAGTGAGGATAAGGATGGCG+CGG | 0.638132 | 6_4:-1083751 | None:intergenic |
| GCGTCGGAAGTAGAAGAGAA+GGG | 0.638583 | 6_4:-1083688 | None:intergenic |
| GTACACCGAAGTTATTTAGG+TGG | 0.638591 | 6_4:+1088950 | Msa0969630:three_prime_UTR |
| GAAGGTGAGGAGGACTCAAG+AGG | 0.641359 | 6_4:+1088626 | Msa0969630:CDS |
| AATGGCCAGCATCCAAAGAG+TGG | 0.641691 | 6_4:+1087728 | Msa0969630:CDS |
| TCAATGCTTGCAAGACTGAG+TGG | 0.642842 | 6_4:+1086972 | Msa0969630:CDS |
| GGTAGGTTCAAGGAAAGTAG+GGG | 0.644041 | 6_4:+1088227 | Msa0969630:CDS |
| TACAAGTCAAAATAGTAAGG+TGG | 0.645026 | 6_4:+1088667 | Msa0969630:CDS |
| ATTCTTCAAACTGAAAAGGG+AGG | 0.647075 | 6_4:-1083784 | None:intergenic |
| TACACTTCCAGAGTCGTGTG+TGG | 0.647458 | 6_4:-1088857 | None:intergenic |
| AATGGTGGTCAGAGCAGACA+CGG | 0.648459 | 6_4:+1088296 | Msa0969630:CDS |
| ACGACGACGACGATGGTGAG+TGG | 0.649974 | 6_4:+1088138 | Msa0969630:CDS |
| GGTGAGGAGGACTCAAGAGG+TGG | 0.651623 | 6_4:+1088629 | Msa0969630:CDS |
| AAAACAATCATCATGTTCCG+TGG | 0.652160 | 6_4:+1087023 | Msa0969630:CDS |
| GGCAATGGTCAAGTTAATGG+TGG | 0.652521 | 6_4:+1088281 | Msa0969630:CDS |
| CTATTAATACCCTTACAAAG+AGG | 0.653915 | 6_4:+1087078 | Msa0969630:CDS |
| GCTCTGATGAAGCTAGAGGT+AGG | 0.654685 | 6_4:+1088210 | Msa0969630:CDS |
| AGTGGCGGAGCAAAGTGCGT+CGG | 0.656485 | 6_4:-1083704 | None:intergenic |
| AAATAGAACAGGACCTGCGG+CGG | 0.657187 | 6_4:+1087676 | Msa0969630:CDS |
| GGCGGCAGTGAGGATAAGGA+TGG | 0.660305 | 6_4:-1083756 | None:intergenic |
| TTGATTACGGAGGAGAGTGG+CGG | 0.661451 | 6_4:-1083719 | None:intergenic |
| AGAAAATAGAACAGGACCTG+CGG | 0.664826 | 6_4:+1087673 | Msa0969630:CDS |
| TACCGGAGCTGCCTCCACCA+CGG | 0.667902 | 6_4:+1086751 | Msa0969630:CDS |
| GAGTTGATTACGGAGGAGAG+TGG | 0.668179 | 6_4:-1083722 | None:intergenic |
| GCTAAAGGCATCCATGGACA+CGG | 0.670630 | 6_4:-1088576 | None:intergenic |
| GGAAGTCCTTATGTTAACCG+TGG | 0.676008 | 6_4:+1087786 | Msa0969630:CDS |
| GCGAAGTTGAAAATGCAATG+TGG | 0.678148 | 6_4:+1088378 | Msa0969630:CDS |
| CCATGGACACGGATTTAGTG+CGG | 0.681554 | 6_4:-1088565 | None:intergenic |
| AAAGAGTATGCGAAGCAAGG+TGG | 0.683453 | 6_4:+1084301 | Msa0969630:CDS |
| AAATGATGACTATGATGGTG+AGG | 0.683700 | 6_4:+1088022 | Msa0969630:CDS |
| GGAGGAAAATGGCGGCAGTG+AGG | 0.687637 | 6_4:-1083766 | None:intergenic |
| TGAGGATAAGGATGGCGCGG+CGG | 0.691932 | 6_4:-1083748 | None:intergenic |
| GGATTTGGAGGACAATGACT+CGG | 0.695707 | 6_4:+1088406 | Msa0969630:CDS |
| AAGAGCTCTGGATCATGCCG+TGG | 0.696702 | 6_4:-1086768 | None:intergenic |
| CTGAAAAGGGAGGAAAATGG+CGG | 0.701002 | 6_4:-1083774 | None:intergenic |
| ATGCTTGCAAGACTGAGTGG+TGG | 0.703573 | 6_4:+1086975 | Msa0969630:CDS |
| GCGGAGGGAGTTGATTACGG+AGG | 0.725893 | 6_4:-1083729 | None:intergenic |
| GCGGATGGGAGTAAATCCTG+AGG | 0.727364 | 6_4:+1087695 | Msa0969630:CDS |
| GAAGAAACTTATGACTGACG+AGG | 0.727589 | 6_4:+1084388 | Msa0969630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAATATAAACTTTA+AGG | - | chr6_4:1083996-1084015 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTAAGAT+TGG | + | chr6_4:1084050-1084069 | Msa0969630:intron | 10.0% |
| !!! | ATATTTTTGATTTAATTAGT+TGG | - | chr6_4:1085421-1085440 | None:intergenic | 10.0% |
| !!! | AATTATCATTTTCATTACTT+TGG | - | chr6_4:1084784-1084803 | None:intergenic | 15.0% |
| !! | ATAAACAAAAAATCTACAAA+AGG | - | chr6_4:1085026-1085045 | None:intergenic | 15.0% |
| !!! | TCTACTACAATTTTTATTTT+TGG | - | chr6_4:1085479-1085498 | None:intergenic | 15.0% |
| !!! | TCTCAATTAAAATTGTTTTA+TGG | + | chr6_4:1085912-1085931 | Msa0969630:intron | 15.0% |
| !!! | AAAATTGTTTTATGGTTTAA+AGG | + | chr6_4:1085920-1085939 | Msa0969630:intron | 15.0% |
| !!! | TTAATAGGTATCAAATTTTT+GGG | - | chr6_4:1087065-1087084 | None:intergenic | 15.0% |
| !!! | ATTAATAGGTATCAAATTTT+TGG | - | chr6_4:1087066-1087085 | None:intergenic | 15.0% |
| !! | GTATTATATTAGTAATTTGA+AGG | - | chr6_4:1087371-1087390 | None:intergenic | 15.0% |
| !! | GAATTCAATTATCATAAAAT+TGG | - | chr6_4:1089055-1089074 | None:intergenic | 15.0% |
| !! | GAATACAAAATTGAAGTAAA+CGG | - | chr6_4:1083937-1083956 | None:intergenic | 20.0% |
| !!! | ATTGGTTTACATTTGTTAAT+TGG | + | chr6_4:1084068-1084087 | Msa0969630:intron | 20.0% |
| !! | TTTGTTAATTGGTATTTCAT+AGG | + | chr6_4:1084079-1084098 | Msa0969630:intron | 20.0% |
| !! | GATTTATGTATTCGAATTTA+TGG | + | chr6_4:1084540-1084559 | Msa0969630:intron | 20.0% |
| !! | TAGACATTAGAAAGTTTAAT+TGG | + | chr6_4:1084718-1084737 | Msa0969630:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr6_4:1085143-1085162 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr6_4:1085225-1085244 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr6_4:1085226-1085245 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr6_4:1085227-1085246 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr6_4:1085268-1085287 | Msa0969630:intron | 20.0% |
| !! | ATTGTAAATGTTGTATAGAT+AGG | + | chr6_4:1086093-1086112 | Msa0969630:intron | 20.0% |
| !! | AAAAACAGTAGTATTGTTTA+AGG | - | chr6_4:1086153-1086172 | None:intergenic | 20.0% |
| !! | ACAATTACTTAAAACTGATA+AGG | - | chr6_4:1086446-1086465 | None:intergenic | 20.0% |
| !! | ATTTCTTTAATTCTTTCCTT+GGG | - | chr6_4:1086948-1086967 | None:intergenic | 20.0% |
| !!! | TAACTGATAATGAACAATAT+TGG | - | chr6_4:1087148-1087167 | None:intergenic | 20.0% |
| !! | AAACATAAAGAAAATAGAAC+AGG | + | chr6_4:1087665-1087684 | Msa0969630:CDS | 20.0% |
| !! | AGGATAAATAATACAAGTAT+TGG | + | chr6_4:1088260-1088279 | Msa0969630:CDS | 20.0% |
| !! | TTAAAAACTACAATGAATTC+TGG | - | chr6_4:1088775-1088794 | None:intergenic | 20.0% |
| !! | ATAATTGAATTCCAATGTTA+TGG | + | chr6_4:1089063-1089082 | Msa0969630:three_prime_UTR | 20.0% |
| ! | AAATTGAAGTAAACGGAAAA+GGG | - | chr6_4:1083930-1083949 | None:intergenic | 25.0% |
| ! | AAAATTGAAGTAAACGGAAA+AGG | - | chr6_4:1083931-1083950 | None:intergenic | 25.0% |
| !! | TTTAAGGAAAAAGCGTAAAA+GGG | - | chr6_4:1083980-1083999 | None:intergenic | 25.0% |
| ! | AATTGGTATTTCATAGGAAT+AGG | + | chr6_4:1084085-1084104 | Msa0969630:intron | 25.0% |
| !!! | ATTCGATGTTTTTGTCTTTT+TGG | + | chr6_4:1084126-1084145 | Msa0969630:intron | 25.0% |
| ! | AACAATAAAAGCTATCGTTA+TGG | - | chr6_4:1084220-1084239 | None:intergenic | 25.0% |
| ! | GTATTCGAATTTATGGTTTA+AGG | + | chr6_4:1084547-1084566 | Msa0969630:intron | 25.0% |
| ! | AATTGTTAAGATTAGAACAG+GGG | - | chr6_4:1084638-1084657 | None:intergenic | 25.0% |
| ! | CAATTGTTAAGATTAGAACA+GGG | - | chr6_4:1084639-1084658 | None:intergenic | 25.0% |
| ! | CTGTTCTAATCTTAACAATT+GGG | + | chr6_4:1084638-1084657 | Msa0969630:intron | 25.0% |
| !!! | TGCCATTTTCTTTTTATTAG+CGG | - | chr6_4:1084664-1084683 | None:intergenic | 25.0% |
| ! | TACATTATGAGTATAGAATC+TGG | + | chr6_4:1084920-1084939 | Msa0969630:intron | 25.0% |
| ! | ACATTATGAGTATAGAATCT+GGG | + | chr6_4:1084921-1084940 | Msa0969630:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr6_4:1085140-1085159 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr6_4:1085144-1085163 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr6_4:1085178-1085197 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr6_4:1085179-1085198 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr6_4:1085215-1085234 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr6_4:1085350-1085369 | Msa0969630:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr6_4:1085351-1085370 | Msa0969630:intron | 25.0% |
| ! | TTTAATTAGTTGGAGTTTAG+TGG | - | chr6_4:1085411-1085430 | None:intergenic | 25.0% |
| !! | GTATCTTTTCTCTCTTTTAT+GGG | - | chr6_4:1085451-1085470 | None:intergenic | 25.0% |
| !! | TGTATCTTTTCTCTCTTTTA+TGG | - | chr6_4:1085452-1085471 | None:intergenic | 25.0% |
| ! | ATTATACCAAACCTTTATAC+AGG | + | chr6_4:1085512-1085531 | Msa0969630:intron | 25.0% |
| !!! | ATTTATTTTGCCGCAATTTT+GGG | - | chr6_4:1085654-1085673 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATTGAGAAGCA+CGG | - | chr6_4:1085908-1085927 | None:intergenic | 25.0% |
| ! | CAACTTATGTTGTAAAGTAT+TGG | + | chr6_4:1085997-1086016 | Msa0969630:intron | 25.0% |
| !!! | AAGTTTATTCAAGCTGATTT+TGG | + | chr6_4:1086070-1086089 | Msa0969630:intron | 25.0% |
| !!! | TACAAGTTTGTTATAAGTTG+TGG | - | chr6_4:1086298-1086317 | None:intergenic | 25.0% |
| ! | CAATGAAGTAGTTAAATTCT+TGG | - | chr6_4:1086493-1086512 | None:intergenic | 25.0% |
| ! | CAAGAATTTAACTACTTCAT+TGG | + | chr6_4:1086491-1086510 | Msa0969630:intron | 25.0% |
| !!! | GTCTATGTTTAATTTTGTTG+TGG | + | chr6_4:1086621-1086640 | Msa0969630:intron | 25.0% |
| ! | TTTCTTTAATTCTTTCCTTG+GGG | - | chr6_4:1086947-1086966 | None:intergenic | 25.0% |
| ! | CATTTCTTTAATTCTTTCCT+TGG | - | chr6_4:1086949-1086968 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAATTAAAGAAA+TGG | + | chr6_4:1086947-1086966 | Msa0969630:CDS | 25.0% |
| ! | AATCATGAACTGTCATATTT+AGG | + | chr6_4:1087120-1087139 | Msa0969630:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | + | chr6_4:1087177-1087196 | Msa0969630:intron | 25.0% |
| !! | TGAAAATGCTTTTGTGATTA+TGG | - | chr6_4:1087255-1087274 | None:intergenic | 25.0% |
| !! | TGATTGACTTTAATGTTTCA+AGG | + | chr6_4:1087507-1087526 | Msa0969630:intron | 25.0% |
| ! | ATGTTTCAAGGACAATAATT+TGG | + | chr6_4:1087519-1087538 | Msa0969630:intron | 25.0% |
| ! | GTTTAATAGATACCATAACT+AGG | - | chr6_4:1087546-1087565 | None:intergenic | 25.0% |
| ! | TTGTTACCGTTATTATATAC+AGG | + | chr6_4:1087596-1087615 | Msa0969630:intron | 25.0% |
| ! | TTCAGCTTCATATTCTTTAT+CGG | - | chr6_4:1087913-1087932 | None:intergenic | 25.0% |
| !!! | AATAATACAAGTATTGGCAA+TGG | + | chr6_4:1088266-1088285 | Msa0969630:CDS | 25.0% |
| ! | AAAACTATTACGATATTGAG+CGG | - | chr6_4:1088504-1088523 | None:intergenic | 25.0% |
| ! | CACATATAATTCCATAACAT+TGG | - | chr6_4:1089077-1089096 | None:intergenic | 25.0% |
| CTCATTCTTCAAACTGAAAA+GGG | - | chr6_4:1083790-1083809 | None:intergenic | 30.0% | |
| ACTCATTCTTCAAACTGAAA+AGG | - | chr6_4:1083791-1083810 | None:intergenic | 30.0% | |
| !! | ACACTGAACATTGTTTCTTT+TGG | - | chr6_4:1083830-1083849 | None:intergenic | 30.0% |
| AGTTGAAAGAGAGATGAAAT+GGG | - | chr6_4:1083884-1083903 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAGATGAAA+TGG | - | chr6_4:1083885-1083904 | None:intergenic | 30.0% | |
| ! | TTAAGGAAAAAGCGTAAAAG+GGG | - | chr6_4:1083979-1083998 | None:intergenic | 30.0% |
| ! | CTTTAAGGAAAAAGCGTAAA+AGG | - | chr6_4:1083981-1084000 | None:intergenic | 30.0% |
| ! | AAACCGTTGAATCTTTTGAA+TGG | + | chr6_4:1084245-1084264 | Msa0969630:CDS | 30.0% |
| GATCCATTCAAAAGATTCAA+CGG | - | chr6_4:1084251-1084270 | None:intergenic | 30.0% | |
| AAGAGTCTGGTAAAACATTA+AGG | + | chr6_4:1084339-1084358 | Msa0969630:CDS | 30.0% | |
| AGAGTCTGGTAAAACATTAA+GGG | + | chr6_4:1084340-1084359 | Msa0969630:CDS | 30.0% | |
| CAACATCTCAAAGCAATATA+TGG | - | chr6_4:1084510-1084529 | None:intergenic | 30.0% | |
| AAAGCCTTCTTAAACACTTT+AGG | + | chr6_4:1084612-1084631 | Msa0969630:intron | 30.0% | |
| CCAATTGTTAAGATTAGAAC+AGG | - | chr6_4:1084640-1084659 | None:intergenic | 30.0% | |
| CCTGTTCTAATCTTAACAAT+TGG | + | chr6_4:1084637-1084656 | Msa0969630:intron | 30.0% | |
| TTGATGCATGATTGATCATA+AGG | + | chr6_4:1084803-1084822 | Msa0969630:intron | 30.0% | |
| TGATGCATGATTGATCATAA+GGG | + | chr6_4:1084804-1084823 | Msa0969630:intron | 30.0% | |
| ATCATAAGGGGATAATTTGA+TGG | + | chr6_4:1084817-1084836 | Msa0969630:intron | 30.0% | |
| AGAGTGATTCAAAATAGACA+TGG | + | chr6_4:1084847-1084866 | Msa0969630:intron | 30.0% | |
| AAAATAGACATGGAACTGTT+AGG | + | chr6_4:1084857-1084876 | Msa0969630:intron | 30.0% | |
| !! | TTTTGTTTATCTTGCCATCA+CGG | + | chr6_4:1085036-1085055 | Msa0969630:intron | 30.0% |
| CATCTAGTAATTTGAAAAGG+GGG | - | chr6_4:1085176-1085195 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr6_4:1085177-1085196 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | + | chr6_4:1085277-1085296 | Msa0969630:intron | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr6_4:1085352-1085371 | Msa0969630:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr6_4:1085353-1085372 | Msa0969630:intron | 30.0% | |
| ! | AGTTCTCTTTGTTCTAAATG+TGG | - | chr6_4:1085631-1085650 | None:intergenic | 30.0% |
| !!! | GATTTATTTTGCCGCAATTT+TGG | - | chr6_4:1085655-1085674 | None:intergenic | 30.0% |
| TCAGACAAAATTAAATGCTG+TGG | + | chr6_4:1085693-1085712 | Msa0969630:intron | 30.0% | |
| ! | ATCCTTTATTTGTGTGTAGT+CGG | + | chr6_4:1085744-1085763 | Msa0969630:intron | 30.0% |
| TTTCTTCTGAATTCTGATCT+GGG | + | chr6_4:1085801-1085820 | Msa0969630:intron | 30.0% | |
| ! | TTTTATGGTTTAAAGGCTCA+TGG | + | chr6_4:1085927-1085946 | Msa0969630:intron | 30.0% |
| ACAAACTTGTATGACAATTC+TGG | + | chr6_4:1086307-1086326 | Msa0969630:intron | 30.0% | |
| !! | TGGCGATTTTAACAAAATTG+AGG | + | chr6_4:1086327-1086346 | Msa0969630:intron | 30.0% |
| !!! | GCTTGAAAATTTTCAAGTCA+CGG | - | chr6_4:1086552-1086571 | None:intergenic | 30.0% |
| CTTCAGGCGTATAAAAAAAT+TGG | + | chr6_4:1086804-1086823 | Msa0969630:CDS | 30.0% | |
| AACAAGAATTATGTTCCAGT+TGG | + | chr6_4:1086834-1086853 | Msa0969630:CDS | 30.0% | |
| !!! | TAGGTATCAAATTTTTGGGT+TGG | - | chr6_4:1087061-1087080 | None:intergenic | 30.0% |
| !! | CTCTTTGTAAGGGTATTAAT+AGG | - | chr6_4:1087080-1087099 | None:intergenic | 30.0% |
| CTATTAATACCCTTACAAAG+AGG | + | chr6_4:1087078-1087097 | Msa0969630:CDS | 30.0% | |
| TTGTGATTATGGTCAATTCA+AGG | - | chr6_4:1087244-1087263 | None:intergenic | 30.0% | |
| !!! | CACAAAAGCATTTTCAAATG+TGG | + | chr6_4:1087259-1087278 | Msa0969630:intron | 30.0% |
| ACTAACGAAAGAACATTTGA+TGG | - | chr6_4:1087305-1087324 | None:intergenic | 30.0% | |
| TGTTCTTTCGTTAGTTAGTT+TGG | + | chr6_4:1087310-1087329 | Msa0969630:intron | 30.0% | |
| TAATGTAAGACACACATTCA+AGG | - | chr6_4:1087337-1087356 | None:intergenic | 30.0% | |
| CTAATATAATACACACTCAG+TGG | + | chr6_4:1087379-1087398 | Msa0969630:intron | 30.0% | |
| TTGTGAACATTCAGAAGTTT+CGG | + | chr6_4:1087416-1087435 | Msa0969630:intron | 30.0% | |
| CTAAAATTACTGTTTGCTCT+TGG | + | chr6_4:1087464-1087483 | Msa0969630:intron | 30.0% | |
| CAATAATTTGGTCCTAGTTA+TGG | + | chr6_4:1087531-1087550 | Msa0969630:intron | 30.0% | |
| ATAGGGCCTGTATATAATAA+CGG | - | chr6_4:1087605-1087624 | None:intergenic | 30.0% | |
| TCATTAGGTTCTATTACTGA+CGG | - | chr6_4:1087819-1087838 | None:intergenic | 30.0% | |
| TCAGTAATAGAACCTAATGA+TGG | + | chr6_4:1087819-1087838 | Msa0969630:CDS | 30.0% | |
| AATAGAACCTAATGATGGTT+TGG | + | chr6_4:1087824-1087843 | Msa0969630:CDS | 30.0% | |
| TAAAGAATATGAAGCTGAAG+AGG | + | chr6_4:1087914-1087933 | Msa0969630:CDS | 30.0% | |
| AGTTTGGAAGACTTAGATAT+TGG | + | chr6_4:1087952-1087971 | Msa0969630:CDS | 30.0% | |
| TCTAGAAATGATGACTATGA+TGG | + | chr6_4:1088017-1088036 | Msa0969630:CDS | 30.0% | |
| ! | AGCTAAATTTAGGACGAATA+TGG | + | chr6_4:1088322-1088341 | Msa0969630:CDS | 30.0% |
| ! | GCTAAATTTAGGACGAATAT+GGG | + | chr6_4:1088323-1088342 | Msa0969630:CDS | 30.0% |
| !!! | CCTTACTATTTTGACTTGTA+GGG | - | chr6_4:1088667-1088686 | None:intergenic | 30.0% |
| !!! | ACCTTACTATTTTGACTTGT+AGG | - | chr6_4:1088668-1088687 | None:intergenic | 30.0% |
| TACAAGTCAAAATAGTAAGG+TGG | + | chr6_4:1088667-1088686 | Msa0969630:CDS | 30.0% | |
| ATTCTGGTATAGCATTTACT+TGG | - | chr6_4:1088759-1088778 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTGACAATCAGAA+CGG | + | chr6_4:1088796-1088815 | Msa0969630:three_prime_UTR | 30.0% |
| TTTGTTCAGATGTGTACTTT+AGG | + | chr6_4:1088896-1088915 | Msa0969630:three_prime_UTR | 30.0% | |
| TTGTTCAGATGTGTACTTTA+GGG | + | chr6_4:1088897-1088916 | Msa0969630:three_prime_UTR | 30.0% | |
| AACCAATCAACAATTTCTTC+AGG | - | chr6_4:1088991-1089010 | None:intergenic | 30.0% | |
| TGGTTGAAACAAAATCATCA+AGG | + | chr6_4:1089006-1089025 | Msa0969630:three_prime_UTR | 30.0% | |
| GGTTGAAACAAAATCATCAA+GGG | + | chr6_4:1089007-1089026 | Msa0969630:three_prime_UTR | 30.0% | |
| AAACTGAAAAGGGAGGAAAA+TGG | - | chr6_4:1083780-1083799 | None:intergenic | 35.0% | |
| ATTCTTCAAACTGAAAAGGG+AGG | - | chr6_4:1083787-1083806 | None:intergenic | 35.0% | |
| AACTTCAATCCAATCTCTTC+AGG | + | chr6_4:1083900-1083919 | Msa0969630:CDS | 35.0% | |
| AAAGCGTAAAAGGGGTTTAA+GGG | - | chr6_4:1083971-1083990 | None:intergenic | 35.0% | |
| ! | AAAAGCGTAAAAGGGGTTTA+AGG | - | chr6_4:1083972-1083991 | None:intergenic | 35.0% |
| TTCACCAAGATTCTAGTCTA+AGG | + | chr6_4:1084018-1084037 | Msa0969630:intron | 35.0% | |
| ACAACCTTAGACTAGAATCT+TGG | - | chr6_4:1084025-1084044 | None:intergenic | 35.0% | |
| TTCAGAAATGTTGTGCCTTT+AGG | + | chr6_4:1084149-1084168 | Msa0969630:intron | 35.0% | |
| ! | TTTTGAATGGATCCTTGTGT+CGG | + | chr6_4:1084258-1084277 | Msa0969630:CDS | 35.0% |
| TCGACAAACAGTTATTAGAC+GGG | - | chr6_4:1084456-1084475 | None:intergenic | 35.0% | |
| GTCGACAAACAGTTATTAGA+CGG | - | chr6_4:1084457-1084476 | None:intergenic | 35.0% | |
| GGCCGCTAATAAAAAGAAAA+TGG | + | chr6_4:1084659-1084678 | Msa0969630:intron | 35.0% | |
| GATGCATGATTGATCATAAG+GGG | + | chr6_4:1084805-1084824 | Msa0969630:intron | 35.0% | |
| GATTGAGATTCTGTCAAGAA+GGG | + | chr6_4:1084879-1084898 | Msa0969630:intron | 35.0% | |
| ATTGAGATTCTGTCAAGAAG+GGG | + | chr6_4:1084880-1084899 | Msa0969630:intron | 35.0% | |
| GTATAGAATCTGGGTTTAAC+AGG | + | chr6_4:1084930-1084949 | Msa0969630:intron | 35.0% | |
| TTTGTTTATCTTGCCATCAC+GGG | + | chr6_4:1085037-1085056 | Msa0969630:intron | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | - | chr6_4:1085128-1085147 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr6_4:1085129-1085148 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr6_4:1085164-1085183 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr6_4:1085165-1085184 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr6_4:1085354-1085373 | Msa0969630:intron | 35.0% | |
| AAGCTTCCTGTATAAAGGTT+TGG | - | chr6_4:1085521-1085540 | None:intergenic | 35.0% | |
| ! | CTTTGTTCTAAATGTGGCAT+GGG | - | chr6_4:1085625-1085644 | None:intergenic | 35.0% |
| ! | TCTTTGTTCTAAATGTGGCA+TGG | - | chr6_4:1085626-1085645 | None:intergenic | 35.0% |
| AAAGAGAACTCCCAAAATTG+CGG | + | chr6_4:1085641-1085660 | Msa0969630:intron | 35.0% | |
| AATTGCGGCAAAATAAATCC+AGG | + | chr6_4:1085656-1085675 | Msa0969630:intron | 35.0% | |
| TTTATTTGTGTGTAGTCGGT+GGG | + | chr6_4:1085748-1085767 | Msa0969630:intron | 35.0% | |
| GTTTCTTCTGAATTCTGATC+TGG | + | chr6_4:1085800-1085819 | Msa0969630:intron | 35.0% | |
| !! | TTTTAATTGAGAAGCACGGT+GGG | - | chr6_4:1085904-1085923 | None:intergenic | 35.0% |
| !!! | ATTTTAATTGAGAAGCACGG+TGG | - | chr6_4:1085905-1085924 | None:intergenic | 35.0% |
| GTGAAAGTAGTAAGCAGAAT+TGG | + | chr6_4:1086209-1086228 | Msa0969630:intron | 35.0% | |
| ! | TTTGTTATAAGTTGTGGCCA+TGG | - | chr6_4:1086292-1086311 | None:intergenic | 35.0% |
| GCTTAAGAAATATGAGCTAC+CGG | + | chr6_4:1086734-1086753 | Msa0969630:CDS | 35.0% | |
| TGCAAAATATGCATCTCCAT+TGG | + | chr6_4:1086883-1086902 | Msa0969630:CDS | 35.0% | |
| AAAACAATCATCATGTTCCG+TGG | + | chr6_4:1087023-1087042 | Msa0969630:CDS | 35.0% | |
| !!! | GTATCAAATTTTTGGGTTGG+CGG | - | chr6_4:1087058-1087077 | None:intergenic | 35.0% |
| TAATACCCTTACAAAGAGGA+AGG | + | chr6_4:1087082-1087101 | Msa0969630:CDS | 35.0% | |
| TCTTACCTTCCTCTTTGTAA+GGG | - | chr6_4:1087090-1087109 | None:intergenic | 35.0% | |
| ATCTTACCTTCCTCTTTGTA+AGG | - | chr6_4:1087091-1087110 | None:intergenic | 35.0% | |
| ! | TGATGGACAAAACTGACTAA+CGG | - | chr6_4:1087288-1087307 | None:intergenic | 35.0% |
| GTGTCTTACATTAGTCAGTT+TGG | + | chr6_4:1087344-1087363 | Msa0969630:intron | 35.0% | |
| ! | TTTTAGTCCCTAAATGTGTG+AGG | - | chr6_4:1087450-1087469 | None:intergenic | 35.0% |
| TTATATACAGGCCCTATTCA+AGG | + | chr6_4:1087608-1087627 | Msa0969630:intron | 35.0% | |
| AATGCCATTGACAAGAAAGA+TGG | + | chr6_4:1087765-1087784 | Msa0969630:CDS | 35.0% | |
| ACTTCCATCTTTCTTGTCAA+TGG | - | chr6_4:1087772-1087791 | None:intergenic | 35.0% | |
| AGCTTCATATTCTTTATCGG+CGG | - | chr6_4:1087910-1087929 | None:intergenic | 35.0% | |
| ! | TCCAAACTCTTCCTTTTCTT+TGG | - | chr6_4:1087940-1087959 | None:intergenic | 35.0% |
| TATTGGAACAGAGAAGAGTA+TGG | + | chr6_4:1087969-1087988 | Msa0969630:CDS | 35.0% | |
| ! | AAATGATGACTATGATGGTG+AGG | + | chr6_4:1088022-1088041 | Msa0969630:CDS | 35.0% |
| AGAATATACATCCCAAGCAT+CGG | + | chr6_4:1088066-1088085 | Msa0969630:CDS | 35.0% | |
| ATTCTCTTCATCGTCACTAT+CGG | - | chr6_4:1088096-1088115 | None:intergenic | 35.0% | |
| ! | GATGTTGACAGCAATTTTGA+TGG | + | chr6_4:1088188-1088207 | Msa0969630:CDS | 35.0% |
| ATTGGCAATGGTCAAGTTAA+TGG | + | chr6_4:1088278-1088297 | Msa0969630:CDS | 35.0% | |
| CGAAGTTGAAAATGCAATGT+GGG | + | chr6_4:1088379-1088398 | Msa0969630:CDS | 35.0% | |
| CCCTACAAGTCAAAATAGTA+AGG | + | chr6_4:1088664-1088683 | Msa0969630:CDS | 35.0% | |
| TGTGTACACCGAAGTTATTT+AGG | + | chr6_4:1088947-1088966 | Msa0969630:three_prime_UTR | 35.0% | |
| TACACCGAAGTTATTTAGGT+GGG | + | chr6_4:1088951-1088970 | Msa0969630:three_prime_UTR | 35.0% | |
| TGCCTGAAGAAATTGTTGAT+TGG | + | chr6_4:1088986-1089005 | Msa0969630:three_prime_UTR | 35.0% | |
| TAGAAGAGAAGGGTTTCAAG+GGG | - | chr6_4:1083681-1083700 | None:intergenic | 40.0% | |
| GTAGAAGAGAAGGGTTTCAA+GGG | - | chr6_4:1083682-1083701 | None:intergenic | 40.0% | |
| AGTAGAAGAGAAGGGTTTCA+AGG | - | chr6_4:1083683-1083702 | None:intergenic | 40.0% | |
| ! | GAGAGATGAAATGGGTTTGA+GGG | - | chr6_4:1083876-1083895 | None:intergenic | 40.0% |
| ! | AGAGAGATGAAATGGGTTTG+AGG | - | chr6_4:1083877-1083896 | None:intergenic | 40.0% |
| AAGGGTTTACCTGAAGAGAT+TGG | - | chr6_4:1083912-1083931 | None:intergenic | 40.0% | |
| !! | AATGTTGTGCCTTTAGGACA+AGG | + | chr6_4:1084155-1084174 | Msa0969630:CDS | 40.0% |
| TGCTCTATTCCTTGTCCTAA+AGG | - | chr6_4:1084167-1084186 | None:intergenic | 40.0% | |
| TTTGAATGGATCCTTGTGTC+GGG | + | chr6_4:1084259-1084278 | Msa0969630:CDS | 40.0% | |
| AGAAGAATGCAGAAAGAGTC+TGG | + | chr6_4:1084326-1084345 | Msa0969630:CDS | 40.0% | |
| GAAGAAACTTATGACTGACG+AGG | + | chr6_4:1084388-1084407 | Msa0969630:CDS | 40.0% | |
| GGATTGAGATTCTGTCAAGA+AGG | + | chr6_4:1084878-1084897 | Msa0969630:intron | 40.0% | |
| !! | TGGGTTTAACAGGTGTTGAA+TGG | + | chr6_4:1084940-1084959 | Msa0969630:intron | 40.0% |
| ACAAAAGGCTAGCGAAAACA+TGG | - | chr6_4:1085011-1085030 | None:intergenic | 40.0% | |
| TTGTTTATCTTGCCATCACG+GGG | + | chr6_4:1085038-1085057 | Msa0969630:intron | 40.0% | |
| AGCTCAAGCTTCCTGTATAA+AGG | - | chr6_4:1085526-1085545 | None:intergenic | 40.0% | |
| TGGTAAAGCTTTCGTCAATG+CGG | - | chr6_4:1085583-1085602 | None:intergenic | 40.0% | |
| CTGAACAGAAATTACCTTCC+TGG | - | chr6_4:1085677-1085696 | None:intergenic | 40.0% | |
| ! | CACCGACTACACACAAATAA+AGG | - | chr6_4:1085749-1085768 | None:intergenic | 40.0% |
| ! | CTTTATTTGTGTGTAGTCGG+TGG | + | chr6_4:1085747-1085766 | Msa0969630:intron | 40.0% |
| GGCCAAAGTCATGAAAGTTT+GGG | + | chr6_4:1085822-1085841 | Msa0969630:intron | 40.0% | |
| ! | TTTAATTGAGAAGCACGGTG+GGG | - | chr6_4:1085903-1085922 | None:intergenic | 40.0% |
| GTGCTCGTTATATGATCTCT+TGG | + | chr6_4:1086643-1086662 | Msa0969630:intron | 40.0% | |
| TTTGCCTGCAAACAGTTGAA+GGG | - | chr6_4:1086687-1086706 | None:intergenic | 40.0% | |
| TTTATACGCCTGAAGCTGTT+CGG | - | chr6_4:1086799-1086818 | None:intergenic | 40.0% | |
| CAGTCTCATGAAACTTCCAA+TGG | - | chr6_4:1086902-1086921 | None:intergenic | 40.0% | |
| ATGGTCAATTCAAGGACTAC+AGG | - | chr6_4:1087236-1087255 | None:intergenic | 40.0% | |
| TGACACTACCTCACACATTT+AGG | + | chr6_4:1087439-1087458 | Msa0969630:intron | 40.0% | |
| GACACTACCTCACACATTTA+GGG | + | chr6_4:1087440-1087459 | Msa0969630:intron | 40.0% | |
| !! | CTCAAATCTGGCCTTGAATA+GGG | - | chr6_4:1087622-1087641 | None:intergenic | 40.0% |
| ! | TTCAAGAGCTTGCTCAAATC+TGG | - | chr6_4:1087634-1087653 | None:intergenic | 40.0% |
| AGAAAATAGAACAGGACCTG+CGG | + | chr6_4:1087673-1087692 | Msa0969630:CDS | 40.0% | |
| ! | GTCAATGGCATTGAAGAAAG+TGG | - | chr6_4:1087757-1087776 | None:intergenic | 40.0% |
| TTGTCTCCACGGTTAACATA+AGG | - | chr6_4:1087795-1087814 | None:intergenic | 40.0% | |
| ! | AGAACCTAATGATGGTTTGG+AGG | + | chr6_4:1087827-1087846 | Msa0969630:CDS | 40.0% |
| GATTCCTCCAAACCATCATT+AGG | - | chr6_4:1087834-1087853 | None:intergenic | 40.0% | |
| GCCAAAGAAAAGGAAGAGTT+TGG | + | chr6_4:1087936-1087955 | Msa0969630:CDS | 40.0% | |
| AGGTAGGTTCAAGGAAAGTA+GGG | + | chr6_4:1088226-1088245 | Msa0969630:CDS | 40.0% | |
| GACACGGTGAAGCTAAATTT+AGG | + | chr6_4:1088312-1088331 | Msa0969630:CDS | 40.0% | |
| GCGAAGTTGAAAATGCAATG+TGG | + | chr6_4:1088378-1088397 | Msa0969630:CDS | 40.0% | |
| TGAAAATGCAATGTGGGAGT+CGG | + | chr6_4:1088385-1088404 | Msa0969630:CDS | 40.0% | |
| !! | AATGACTCGGTACATTTGAG+AGG | + | chr6_4:1088419-1088438 | Msa0969630:CDS | 40.0% |
| AATGCACCAAAGAGTTTGAG+AGG | + | chr6_4:1088524-1088543 | Msa0969630:CDS | 40.0% | |
| ! | CCTTTGGTGATCTCTTCTTA+TGG | - | chr6_4:1088706-1088725 | None:intergenic | 40.0% |
| CCATAAGAAGAGATCACCAA+AGG | + | chr6_4:1088703-1088722 | Msa0969630:CDS | 40.0% | |
| AAAGGAAGCTGATGAAGCTT+GGG | + | chr6_4:1088721-1088740 | Msa0969630:CDS | 40.0% | |
| TGTTTGACAATCAGAACGGA+TGG | + | chr6_4:1088800-1088819 | Msa0969630:three_prime_UTR | 40.0% | |
| ! | GTTTCTGAAAAACGAGAGGT+GGG | - | chr6_4:1088838-1088857 | None:intergenic | 40.0% |
| ! | TGTGGTTTCTGAAAAACGAG+AGG | - | chr6_4:1088842-1088861 | None:intergenic | 40.0% |
| GTACACCGAAGTTATTTAGG+TGG | + | chr6_4:1088950-1088969 | Msa0969630:three_prime_UTR | 40.0% | |
| CTGAAAAGGGAGGAAAATGG+CGG | - | chr6_4:1083777-1083796 | None:intergenic | 45.0% | |
| TTGAATGGATCCTTGTGTCG+GGG | + | chr6_4:1084260-1084279 | Msa0969630:CDS | 45.0% | |
| ! | AGGAAAGAGTATGCGAAGCA+AGG | + | chr6_4:1084298-1084317 | Msa0969630:CDS | 45.0% |
| ! | AAAGAGTATGCGAAGCAAGG+TGG | + | chr6_4:1084301-1084320 | Msa0969630:CDS | 45.0% |
| AACTTATGACTGACGAGGAG+CGG | + | chr6_4:1084393-1084412 | Msa0969630:CDS | 45.0% | |
| ! | GGGGCCTAAAGTGTTTAAGA+AGG | - | chr6_4:1084619-1084638 | None:intergenic | 45.0% |
| TGTTTATCTTGCCATCACGG+GGG | + | chr6_4:1085039-1085058 | Msa0969630:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr6_4:1085120-1085139 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr6_4:1085124-1085143 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr6_4:1085365-1085384 | Msa0969630:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr6_4:1085366-1085385 | Msa0969630:intron | 45.0% | |
| CTTTCGTCAATGCGGTTTCA+GGG | - | chr6_4:1085575-1085594 | None:intergenic | 45.0% | |
| GCGGCAAAATAAATCCAGGA+AGG | + | chr6_4:1085660-1085679 | Msa0969630:intron | 45.0% | |
| AGAATCGAACTTCGTGATCG+AGG | - | chr6_4:1085722-1085741 | None:intergenic | 45.0% | |
| GGGCCAAAGTCATGAAAGTT+TGG | + | chr6_4:1085821-1085840 | Msa0969630:intron | 45.0% | |
| GGCCCAAACTTTCATGACTT+TGG | - | chr6_4:1085827-1085846 | None:intergenic | 45.0% | |
| ACTTTGATGCCTGTGCGAAA+TGG | + | chr6_4:1086249-1086268 | Msa0969630:intron | 45.0% | |
| CTTTGATGCCTGTGCGAAAT+GGG | + | chr6_4:1086250-1086269 | Msa0969630:intron | 45.0% | |
| TTTGATGCCTGTGCGAAATG+GGG | + | chr6_4:1086251-1086270 | Msa0969630:intron | 45.0% | |
| GGCAAGTTCAAGTGTTTCCA+TGG | + | chr6_4:1086272-1086291 | Msa0969630:intron | 45.0% | |
| AAGAATGCGTGCATGTGTAC+TGG | + | chr6_4:1086379-1086398 | Msa0969630:intron | 45.0% | |
| CTTTGCCTGCAAACAGTTGA+AGG | - | chr6_4:1086688-1086707 | None:intergenic | 45.0% | |
| TTATACGCCTGAAGCTGTTC+GGG | - | chr6_4:1086798-1086817 | None:intergenic | 45.0% | |
| ! | TATGTTCCAGTTGGTGTTCG+TGG | + | chr6_4:1086843-1086862 | Msa0969630:CDS | 45.0% |
| AATACTCCACGAACACCAAC+TGG | - | chr6_4:1086852-1086871 | None:intergenic | 45.0% | |
| ! | GTTGGTGTTCGTGGAGTATT+TGG | + | chr6_4:1086852-1086871 | Msa0969630:CDS | 45.0% |
| TTGTTGTGACAACTTCCCCA+AGG | + | chr6_4:1086929-1086948 | Msa0969630:CDS | 45.0% | |
| TCAATGCTTGCAAGACTGAG+TGG | + | chr6_4:1086972-1086991 | Msa0969630:CDS | 45.0% | |
| GTTGGCGGTAATTTCTACCA+CGG | - | chr6_4:1087043-1087062 | None:intergenic | 45.0% | |
| !! | GCTCAAATCTGGCCTTGAAT+AGG | - | chr6_4:1087623-1087642 | None:intergenic | 45.0% |
| AGAAAGTGGAAGCCACTCTT+TGG | - | chr6_4:1087743-1087762 | None:intergenic | 45.0% | |
| GGAAGTCCTTATGTTAACCG+TGG | + | chr6_4:1087786-1087805 | Msa0969630:CDS | 45.0% | |
| CTGAACAGGAAGAGCTAGAT+CGG | + | chr6_4:1087862-1087881 | Msa0969630:CDS | 45.0% | |
| TCGGTTCATCGCTGATATAG+AGG | + | chr6_4:1087881-1087900 | Msa0969630:CDS | 45.0% | |
| AGCTGAAGAGGCCAAAGAAA+AGG | + | chr6_4:1087926-1087945 | Msa0969630:CDS | 45.0% | |
| ! | TGGAACAGAGAAGAGTATGG+TGG | + | chr6_4:1087972-1087991 | Msa0969630:CDS | 45.0% |
| ! | GACTATGATGGTGAGGTTAG+AGG | + | chr6_4:1088029-1088048 | Msa0969630:CDS | 45.0% |
| AGGTTAGAGGCTCAAGAGTT+CGG | + | chr6_4:1088042-1088061 | Msa0969630:CDS | 45.0% | |
| GCTGTCAACATCACTGTCAT+CGG | - | chr6_4:1088180-1088199 | None:intergenic | 45.0% | |
| TGAAGCTAGAGGTAGGTTCA+AGG | + | chr6_4:1088217-1088236 | Msa0969630:CDS | 45.0% | |
| GAGGTAGGTTCAAGGAAAGT+AGG | + | chr6_4:1088225-1088244 | Msa0969630:CDS | 45.0% | |
| GGTAGGTTCAAGGAAAGTAG+GGG | + | chr6_4:1088227-1088246 | Msa0969630:CDS | 45.0% | |
| GTAGGTTCAAGGAAAGTAGG+GGG | + | chr6_4:1088228-1088247 | Msa0969630:CDS | 45.0% | |
| GGCAATGGTCAAGTTAATGG+TGG | + | chr6_4:1088281-1088300 | Msa0969630:CDS | 45.0% | |
| GGATTTGGAGGACAATGACT+CGG | + | chr6_4:1088406-1088425 | Msa0969630:CDS | 45.0% | |
| ACCAAAGAGTTTGAGAGGCA+GGG | + | chr6_4:1088529-1088548 | Msa0969630:CDS | 45.0% | |
| CAAGCTTCATCAGCTTCCTT+TGG | - | chr6_4:1088722-1088741 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGATGAAGCT+TGG | + | chr6_4:1088720-1088739 | Msa0969630:CDS | 45.0% | |
| ! | GGTTTCTGAAAAACGAGAGG+TGG | - | chr6_4:1088839-1088858 | None:intergenic | 45.0% |
| ACCGAAGTTATTTAGGTGGG+TGG | + | chr6_4:1088954-1088973 | Msa0969630:three_prime_UTR | 45.0% | |
| CCCACCCACCTAAATAACTT+CGG | - | chr6_4:1088958-1088977 | None:intergenic | 45.0% | |
| CCGAAGTTATTTAGGTGGGT+GGG | + | chr6_4:1088955-1088974 | Msa0969630:three_prime_UTR | 45.0% | |
| GCGTCGGAAGTAGAAGAGAA+GGG | - | chr6_4:1083691-1083710 | None:intergenic | 50.0% | |
| TGCGTCGGAAGTAGAAGAGA+AGG | - | chr6_4:1083692-1083711 | None:intergenic | 50.0% | |
| TTGATTACGGAGGAGAGTGG+CGG | - | chr6_4:1083722-1083741 | None:intergenic | 50.0% | |
| ! | GAGTTGATTACGGAGGAGAG+TGG | - | chr6_4:1083725-1083744 | None:intergenic | 50.0% |
| AAATGGCGGCAGTGAGGATA+AGG | - | chr6_4:1083763-1083782 | None:intergenic | 50.0% | |
| GTTCTTACAAACCCCCGTGA+TGG | - | chr6_4:1085053-1085072 | None:intergenic | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr6_4:1085121-1085140 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr6_4:1085370-1085389 | Msa0969630:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr6_4:1085374-1085393 | Msa0969630:intron | 50.0% | |
| GCTTTCGTCAATGCGGTTTC+AGG | - | chr6_4:1085576-1085595 | None:intergenic | 50.0% | |
| !! | GTTACTGACTCGACTGGCTT+TGG | - | chr6_4:1085603-1085622 | None:intergenic | 50.0% |
| TGGGATGAGATGTGTGTGGT+GGG | + | chr6_4:1085767-1085786 | Msa0969630:intron | 50.0% | |
| GTTTGGGCCCCAAATATCTG+AGG | + | chr6_4:1085838-1085857 | Msa0969630:intron | 50.0% | |
| CTTAGAGTGACTGATCGACG+AGG | - | chr6_4:1086122-1086141 | None:intergenic | 50.0% | |
| CCTGCAAACAGTTGAAGGGT+AGG | - | chr6_4:1086683-1086702 | None:intergenic | 50.0% | |
| CCTACCCTTCAACTGTTTGC+AGG | + | chr6_4:1086680-1086699 | Msa0969630:intron | 50.0% | |
| TGTTCGGGTGTAAAGAGCTC+TGG | - | chr6_4:1086783-1086802 | None:intergenic | 50.0% | |
| CTTTACACCCGAACAGCTTC+AGG | + | chr6_4:1086788-1086807 | Msa0969630:CDS | 50.0% | |
| ! | GGTGTTCGTGGAGTATTTGG+AGG | + | chr6_4:1086855-1086874 | Msa0969630:CDS | 50.0% |
| ATGCTTGCAAGACTGAGTGG+TGG | + | chr6_4:1086975-1086994 | Msa0969630:CDS | 50.0% | |
| TGCTTGCAAGACTGAGTGGT+GGG | + | chr6_4:1086976-1086995 | Msa0969630:CDS | 50.0% | |
| AAATAGAACAGGACCTGCGG+CGG | + | chr6_4:1087676-1087695 | Msa0969630:CDS | 50.0% | |
| TCCTGAGGATCCAACTGCAA+TGG | + | chr6_4:1087710-1087729 | Msa0969630:CDS | 50.0% | |
| AATGGCCAGCATCCAAAGAG+TGG | + | chr6_4:1087728-1087747 | Msa0969630:CDS | 50.0% | |
| TTACTGACGGCTTGTCTCCA+CGG | - | chr6_4:1087806-1087825 | None:intergenic | 50.0% | |
| GGAATCAGATCCTGCTGAAC+AGG | + | chr6_4:1087848-1087867 | Msa0969630:CDS | 50.0% | |
| !! | TCTAGCTCTTCCTGTTCAGC+AGG | - | chr6_4:1087861-1087880 | None:intergenic | 50.0% |
| !! | GATGGCTCTGATGAAGCTAG+AGG | + | chr6_4:1088206-1088225 | Msa0969630:CDS | 50.0% |
| GCTCTGATGAAGCTAGAGGT+AGG | + | chr6_4:1088210-1088229 | Msa0969630:CDS | 50.0% | |
| AAAGTAGGGGGAGAAGAGAG+AGG | + | chr6_4:1088240-1088259 | Msa0969630:CDS | 50.0% | |
| AATGGTGGTCAGAGCAGACA+CGG | + | chr6_4:1088296-1088315 | Msa0969630:CDS | 50.0% | |
| TGCAATGTGGGAGTCGGATT+TGG | + | chr6_4:1088391-1088410 | Msa0969630:CDS | 50.0% | |
| AATGTGGGAGTCGGATTTGG+AGG | + | chr6_4:1088394-1088413 | Msa0969630:CDS | 50.0% | |
| CACCAAAGAGTTTGAGAGGC+AGG | + | chr6_4:1088528-1088547 | Msa0969630:CDS | 50.0% | |
| TCCCTGCCTCTCAAACTCTT+TGG | - | chr6_4:1088533-1088552 | None:intergenic | 50.0% | |
| CCATGGACACGGATTTAGTG+CGG | - | chr6_4:1088568-1088587 | None:intergenic | 50.0% | |
| !! | GCTAAAGGCATCCATGGACA+CGG | - | chr6_4:1088579-1088598 | None:intergenic | 50.0% |
| GTGTCCATGGATGCCTTTAG+CGG | + | chr6_4:1088578-1088597 | Msa0969630:CDS | 50.0% | |
| !! | CAAACCGCTAAAGGCATCCA+TGG | - | chr6_4:1088585-1088604 | None:intergenic | 50.0% |
| CATGGATGCCTTTAGCGGTT+TGG | + | chr6_4:1088583-1088602 | Msa0969630:CDS | 50.0% | |
| CCAGTCTTCCAAACCGCTAA+AGG | - | chr6_4:1088594-1088613 | None:intergenic | 50.0% | |
| ! | CCTTTAGCGGTTTGGAAGAC+TGG | + | chr6_4:1088591-1088610 | Msa0969630:CDS | 50.0% |
| GACTGGATGTCCCAATCAGA+AGG | + | chr6_4:1088608-1088627 | Msa0969630:CDS | 50.0% | |
| GATGTCCCAATCAGAAGGTG+AGG | + | chr6_4:1088613-1088632 | Msa0969630:CDS | 50.0% | |
| GTCCTCCTCACCTTCTGATT+GGG | - | chr6_4:1088621-1088640 | None:intergenic | 50.0% | |
| AGTCCTCCTCACCTTCTGAT+TGG | - | chr6_4:1088622-1088641 | None:intergenic | 50.0% | |
| GGACTCAAGAGGTGGTGATA+AGG | + | chr6_4:1088637-1088656 | Msa0969630:CDS | 50.0% | |
| TGAAGCTTGGGACAGTGACT+AGG | + | chr6_4:1088733-1088752 | Msa0969630:CDS | 50.0% | |
| TCAGAAACCACACACGACTC+TGG | + | chr6_4:1088850-1088869 | Msa0969630:three_prime_UTR | 50.0% | |
| TACACTTCCAGAGTCGTGTG+TGG | - | chr6_4:1088860-1088879 | None:intergenic | 50.0% | |
| CAGTGAGGATAAGGATGGCG+CGG | - | chr6_4:1083754-1083773 | None:intergenic | 55.0% | |
| CGTTGACATTCCCCGACACA+AGG | - | chr6_4:1084273-1084292 | None:intergenic | 55.0% | |
| CGGGGAATGTCAACGATGAG+AGG | + | chr6_4:1084278-1084297 | Msa0969630:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr6_4:1085373-1085392 | Msa0969630:intron | 55.0% | |
| !! | GCATGGGTTACTGACTCGAC+TGG | - | chr6_4:1085609-1085628 | None:intergenic | 55.0% |
| TCGGTGGGATGAGATGTGTG+TGG | + | chr6_4:1085763-1085782 | Msa0969630:intron | 55.0% | |
| GTGGGATGAGATGTGTGTGG+TGG | + | chr6_4:1085766-1085785 | Msa0969630:intron | 55.0% | |
| GGGATGAGATGTGTGTGGTG+GGG | + | chr6_4:1085768-1085787 | Msa0969630:intron | 55.0% | |
| GGATGAGATGTGTGTGGTGG+GGG | + | chr6_4:1085769-1085788 | Msa0969630:intron | 55.0% | |
| ! | AGATGTGTGTGGTGGGGGAA+GGG | + | chr6_4:1085774-1085793 | Msa0969630:intron | 55.0% |
| CGCAGGGCCTCAGATATTTG+GGG | - | chr6_4:1085848-1085867 | None:intergenic | 55.0% | |
| GCGCAGGGCCTCAGATATTT+GGG | - | chr6_4:1085849-1085868 | None:intergenic | 55.0% | |
| AGCGCAGGGCCTCAGATATT+TGG | - | chr6_4:1085850-1085869 | None:intergenic | 55.0% | |
| GAACTTGCCCCATTTCGCAC+AGG | - | chr6_4:1086261-1086280 | None:intergenic | 55.0% | |
| !! | AAGAGCTCTGGATCATGCCG+TGG | - | chr6_4:1086771-1086790 | None:intergenic | 55.0% |
| GCGGATGGGAGTAAATCCTG+AGG | + | chr6_4:1087695-1087714 | Msa0969630:CDS | 55.0% | |
| GCCATTGCAGTTGGATCCTC+AGG | - | chr6_4:1087714-1087733 | None:intergenic | 55.0% | |
| TGGATGCTGGCCATTGCAGT+TGG | - | chr6_4:1087723-1087742 | None:intergenic | 55.0% | |
| GGAAGCCACTCTTTGGATGC+TGG | - | chr6_4:1087736-1087755 | None:intergenic | 55.0% | |
| CTATCGGCAGTCCGATGCTT+GGG | - | chr6_4:1088080-1088099 | None:intergenic | 55.0% | |
| ACTATCGGCAGTCCGATGCT+TGG | - | chr6_4:1088081-1088100 | None:intergenic | 55.0% | |
| GACGATGGTGAGTGGCATCA+TGG | + | chr6_4:1088146-1088165 | Msa0969630:CDS | 55.0% | |
| AGCAGCAGCAGCGATGATGA+GGG | + | chr6_4:1088464-1088483 | Msa0969630:CDS | 55.0% | |
| AGTTTGAGAGGCAGGGAAGC+AGG | + | chr6_4:1088536-1088555 | Msa0969630:CDS | 55.0% | |
| CCGCACTAAATCCGTGTCCA+TGG | + | chr6_4:1088565-1088584 | Msa0969630:CDS | 55.0% | |
| GTCCCAATCAGAAGGTGAGG+AGG | + | chr6_4:1088616-1088635 | Msa0969630:CDS | 55.0% | |
| GAAGGTGAGGAGGACTCAAG+AGG | + | chr6_4:1088626-1088645 | Msa0969630:CDS | 55.0% | |
| ! | AGTGGCGGAGCAAAGTGCGT+CGG | - | chr6_4:1083707-1083726 | None:intergenic | 60.0% |
| ! | GCGGAGGGAGTTGATTACGG+AGG | - | chr6_4:1083732-1083751 | None:intergenic | 60.0% |
| ! | GCGGCGGAGGGAGTTGATTA+CGG | - | chr6_4:1083735-1083754 | None:intergenic | 60.0% |
| TGAGGATAAGGATGGCGCGG+CGG | - | chr6_4:1083751-1083770 | None:intergenic | 60.0% | |
| GGCGGCAGTGAGGATAAGGA+TGG | - | chr6_4:1083759-1083778 | None:intergenic | 60.0% | |
| GGAGGAAAATGGCGGCAGTG+AGG | - | chr6_4:1083769-1083788 | None:intergenic | 60.0% | |
| ! | GAGATGTGTGTGGTGGGGGA+AGG | + | chr6_4:1085773-1085792 | Msa0969630:intron | 60.0% |
| GTAGGCTGAGCTACAGCGCA+GGG | - | chr6_4:1085864-1085883 | None:intergenic | 60.0% | |
| TGTAGGCTGAGCTACAGCGC+AGG | - | chr6_4:1085865-1085884 | None:intergenic | 60.0% | |
| CGCTGTAGCTCAGCCTACAC+AGG | + | chr6_4:1085866-1085885 | Msa0969630:intron | 60.0% | |
| AGCTCAGCCTACACAGGCAC+AGG | + | chr6_4:1085872-1085891 | Msa0969630:intron | 60.0% | |
| GCTCAGCCTACACAGGCACA+GGG | + | chr6_4:1085873-1085892 | Msa0969630:intron | 60.0% | |
| ! | ATTGAGAAGCACGGTGGGGC+CGG | - | chr6_4:1085899-1085918 | None:intergenic | 60.0% |
| TCTGGATCATGCCGTGGTGG+AGG | - | chr6_4:1086765-1086784 | None:intergenic | 60.0% | |
| !! | AGCTCTGGATCATGCCGTGG+TGG | - | chr6_4:1086768-1086787 | None:intergenic | 60.0% |
| GATTTACTCCCATCCGCCGC+AGG | - | chr6_4:1087692-1087711 | None:intergenic | 60.0% | |
| ACGACGACGACGATGGTGAG+TGG | + | chr6_4:1088138-1088157 | Msa0969630:CDS | 60.0% | |
| GAGCAGCAGCAGCGATGATG+AGG | + | chr6_4:1088463-1088482 | Msa0969630:CDS | 60.0% | |
| GGTGAGGAGGACTCAAGAGG+TGG | + | chr6_4:1088629-1088648 | Msa0969630:CDS | 60.0% | |
| GATAAGGATGGCGCGGCGGA+GGG | - | chr6_4:1083747-1083766 | None:intergenic | 65.0% | |
| AGCCTACACAGGCACAGGGC+CGG | + | chr6_4:1085877-1085896 | Msa0969630:intron | 65.0% | |
| TACCGGAGCTGCCTCCACCA+CGG | + | chr6_4:1086751-1086770 | Msa0969630:CDS | 65.0% | |
| AGAACAGGACCTGCGGCGGA+TGG | + | chr6_4:1087680-1087699 | Msa0969630:CDS | 65.0% | |
| GAACAGGACCTGCGGCGGAT+GGG | + | chr6_4:1087681-1087700 | Msa0969630:CDS | 65.0% | |
| GACGACGACGACGACGACGA+TGG | + | chr6_4:1088131-1088150 | Msa0969630:CDS | 65.0% | |
| GGATAAGGATGGCGCGGCGG+AGG | - | chr6_4:1083748-1083767 | None:intergenic | 70.0% | |
| ! | TGCCGTGGTGGAGGCAGCTC+CGG | - | chr6_4:1086756-1086775 | None:intergenic | 70.0% |
| GGCCGGCCCTGTGCCTGTGT+AGG | - | chr6_4:1085882-1085901 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1083668 | 1089132 | 1083668 | ID=Msa0969630;Name=Msa0969630 |
| chr6_4 | mRNA | 1083668 | 1089132 | 1083668 | ID=Msa0969630-mRNA-1;Parent=Msa0969630;Name=Msa0969630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=171|1|1|1|1|1|4|378|634 |
| chr6_4 | exon | 1083668 | 1083921 | 1083668 | ID=Msa0969630-mRNA-1:exon:517;Parent=Msa0969630-mRNA-1 |
| chr6_4 | exon | 1084154 | 1084436 | 1084154 | ID=Msa0969630-mRNA-1:exon:518;Parent=Msa0969630-mRNA-1 |
| chr6_4 | exon | 1086702 | 1087103 | 1086702 | ID=Msa0969630-mRNA-1:exon:519;Parent=Msa0969630-mRNA-1 |
| chr6_4 | exon | 1087618 | 1089132 | 1087618 | ID=Msa0969630-mRNA-1:exon:520;Parent=Msa0969630-mRNA-1 |
| chr6_4 | five_prime_UTR | 1083668 | 1083838 | 1083668 | ID=Msa0969630-mRNA-1:five_prime_utr;Parent=Msa0969630-mRNA-1 |
| chr6_4 | CDS | 1083839 | 1083921 | 1083839 | ID=Msa0969630-mRNA-1:cds;Parent=Msa0969630-mRNA-1 |
| chr6_4 | CDS | 1084154 | 1084436 | 1084154 | ID=Msa0969630-mRNA-1:cds;Parent=Msa0969630-mRNA-1 |
| chr6_4 | CDS | 1086702 | 1087103 | 1086702 | ID=Msa0969630-mRNA-1:cds;Parent=Msa0969630-mRNA-1 |
| chr6_4 | CDS | 1087618 | 1088754 | 1087618 | ID=Msa0969630-mRNA-1:cds;Parent=Msa0969630-mRNA-1 |
| chr6_4 | three_prime_UTR | 1088755 | 1089132 | 1088755 | ID=Msa0969630-mRNA-1:three_prime_utr;Parent=Msa0969630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
