Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474010 | XP_013450735.1 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474010 | sp|Q9LT57|CFM9_ARATH | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.73e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474010 | A0A072U6I9 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067620 | Msa0474010 | 0.805717 | 1.166596e-49 | -8.615850e-47 |
| Msa0150820 | Msa0474010 | 0.800658 | 1.299834e-48 | -8.615850e-47 |
| Msa0159180 | Msa0474010 | 0.800631 | 1.316123e-48 | -8.615850e-47 |
| Msa0205230 | Msa0474010 | 0.801830 | 7.480869e-49 | -8.615850e-47 |
| Msa0388700 | Msa0474010 | 0.806562 | 7.743469e-50 | -8.615850e-47 |
| Msa0473990 | Msa0474010 | 0.887038 | 2.026520e-72 | -8.615850e-47 |
| Msa0474010 | Msa0481530 | 0.806121 | 9.594582e-50 | -8.615850e-47 |
| Msa0474010 | Msa0556060 | 0.813697 | 2.244386e-51 | -8.615850e-47 |
| Msa0474010 | Msa0771720 | 0.818886 | 1.551145e-52 | -8.615850e-47 |
| Msa0474010 | Msa0877410 | 0.809806 | 1.577488e-50 | -8.615850e-47 |
| Msa0474010 | Msa0933310 | 0.805563 | 1.256871e-49 | -8.615850e-47 |
| Msa0474010 | Msa0969340 | 0.816350 | 5.787407e-52 | -8.615850e-47 |
| Msa0474010 | Msa0969790 | 0.804055 | 2.595617e-49 | -8.615850e-47 |
| Msa0474010 | Msa0971090 | 0.805208 | 1.491446e-49 | -8.615850e-47 |
| Msa0474010 | Msa1023920 | 0.808602 | 2.857821e-50 | -8.615850e-47 |
| Msa0474010 | Msa1051200 | 0.805454 | 1.324338e-49 | -8.615850e-47 |
| Msa0474010 | Msa1062920 | 0.803751 | 3.001449e-49 | -8.615850e-47 |
| Msa0474010 | Msa1107900 | 0.807584 | 4.707082e-50 | -8.615850e-47 |
| Msa0474010 | Msa1411020 | 0.800470 | 1.419748e-48 | -8.615850e-47 |
| Msa0474010 | Msa1439320 | 0.803267 | 3.782202e-49 | -8.615850e-47 |
| Msa0253200 | Msa0474010 | 0.801978 | 6.977138e-49 | -8.615850e-47 |
| Msa0292030 | Msa0474010 | 0.802701 | 4.950502e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474010 | MtrunA17_Chr6g0449261 | 92.902 | 634 | 39 | 2 | 1 | 631 | 1 | 631 | 0.0 | 1122 |
| Msa0474010 | MtrunA17_Chr4g0067911 | 49.704 | 169 | 85 | 0 | 113 | 281 | 161 | 329 | 2.22e-45 | 164 |
| Msa0474010 | MtrunA17_Chr1g0171521 | 51.634 | 153 | 72 | 1 | 110 | 260 | 116 | 268 | 2.09e-42 | 154 |
| Msa0474010 | MtrunA17_Chr4g0033621 | 44.970 | 169 | 93 | 0 | 113 | 281 | 134 | 302 | 5.31e-40 | 151 |
| Msa0474010 | MtrunA17_Chr8g0391361 | 48.611 | 144 | 74 | 0 | 113 | 256 | 7 | 150 | 4.66e-37 | 135 |
| Msa0474010 | MtrunA17_Chr6g0484411 | 32.701 | 211 | 128 | 5 | 77 | 284 | 557 | 756 | 4.46e-23 | 104 |
| Msa0474010 | MtrunA17_Chr1g0187011 | 31.925 | 213 | 127 | 6 | 77 | 284 | 566 | 765 | 5.38e-23 | 104 |
| Msa0474010 | MtrunA17_Chr6g0451621 | 35.593 | 177 | 106 | 3 | 114 | 284 | 518 | 692 | 1.40e-21 | 100 |
| Msa0474010 | MtrunA17_Chr2g0330811 | 37.500 | 128 | 72 | 2 | 148 | 272 | 593 | 715 | 9.08e-18 | 87.4 |
| Msa0474010 | MtrunA17_Chr4g0071101 | 28.293 | 205 | 140 | 3 | 89 | 290 | 531 | 731 | 3.38e-17 | 85.9 |
| Msa0474010 | MtrunA17_Chr8g0391141 | 30.851 | 188 | 120 | 4 | 74 | 258 | 412 | 592 | 1.11e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474010 | AT3G27550.2 | 71.756 | 393 | 96 | 6 | 1 | 385 | 1 | 386 | 4.19e-164 | 481 |
| Msa0474010 | AT3G27550.3 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.82e-163 | 476 |
| Msa0474010 | AT3G27550.1 | 80.303 | 330 | 60 | 2 | 61 | 385 | 1 | 330 | 5.82e-163 | 476 |
| Msa0474010 | AT3G25440.2 | 45.918 | 196 | 104 | 1 | 96 | 289 | 57 | 252 | 2.85e-47 | 171 |
| Msa0474010 | AT3G25440.1 | 45.918 | 196 | 104 | 1 | 96 | 289 | 121 | 316 | 1.42e-46 | 171 |
| Msa0474010 | AT2G28480.1 | 46.857 | 175 | 93 | 0 | 107 | 281 | 119 | 293 | 7.29e-44 | 161 |
| Msa0474010 | AT3G25440.4 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0474010 | AT3G25440.3 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0474010 | AT3G25440.5 | 47.826 | 161 | 82 | 1 | 131 | 289 | 1 | 161 | 4.91e-42 | 154 |
| Msa0474010 | AT4G13070.1 | 45.128 | 195 | 97 | 3 | 78 | 268 | 111 | 299 | 1.71e-40 | 151 |
| Msa0474010 | AT3G18390.1 | 35.106 | 188 | 109 | 4 | 100 | 284 | 611 | 788 | 1.88e-25 | 112 |
| Msa0474010 | AT3G23070.1 | 36.000 | 175 | 99 | 3 | 90 | 261 | 586 | 750 | 7.31e-23 | 104 |
| Msa0474010 | AT4G14510.1 | 32.812 | 192 | 116 | 3 | 90 | 278 | 613 | 794 | 2.50e-22 | 102 |
| Msa0474010 | AT3G01370.1 | 37.143 | 140 | 85 | 1 | 148 | 284 | 575 | 714 | 3.49e-22 | 102 |
| Msa0474010 | AT4G29750.1 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 4.42e-21 | 98.6 |
| Msa0474010 | AT4G29750.2 | 32.609 | 184 | 112 | 3 | 113 | 290 | 611 | 788 | 6.98e-21 | 97.8 |
| Msa0474010 | AT5G16180.1 | 31.795 | 195 | 118 | 5 | 111 | 290 | 523 | 717 | 1.57e-16 | 84.0 |
Find 205 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGGTGATCTCTTCTTA+TGG | 0.210452 | 3_3:+76778561 | None:intergenic |
| GTTGGTGTTCGTGGAGTATT+TGG | 0.242614 | 3_3:-76780405 | Msa0474010:CDS |
| AAGAGTCTGGTAAAACATTA+AGG | 0.251609 | 3_3:-76782638 | Msa0474010:CDS |
| TTGTTCAGATGTGTACTTTA+GGG | 0.259867 | 3_3:-76778367 | Msa0474010:three_prime_UTR |
| TTCAGCTTCATATTCTTTAT+CGG | 0.273368 | 3_3:+76779345 | None:intergenic |
| TGCAATGTGGGAGTCGGATT+TGG | 0.290486 | 3_3:-76778873 | Msa0474010:CDS |
| CATTTCTTTAATTCTTTCCT+TGG | 0.291251 | 3_3:+76780311 | None:intergenic |
| TCCCTGCCTCTCAAACTCTT+TGG | 0.295275 | 3_3:+76778734 | None:intergenic |
| TTTGTTCAGATGTGTACTTT+AGG | 0.300577 | 3_3:-76778368 | Msa0474010:three_prime_UTR |
| CTCTTTGTAAGGGTATTAAT+AGG | 0.314891 | 3_3:+76780180 | None:intergenic |
| CAAGCTTCATCAGCTTCCTT+TGG | 0.315883 | 3_3:+76778545 | None:intergenic |
| AGTTTGGAAGACTTAGATAT+TGG | 0.318025 | 3_3:-76779303 | Msa0474010:CDS |
| ATTGGCAATGGTCAAGTTAA+TGG | 0.324195 | 3_3:-76778986 | Msa0474010:CDS |
| AGCTAAATTTAGGACGAATA+TGG | 0.330496 | 3_3:-76778942 | Msa0474010:CDS |
| AGTCCTCCTCACCTTCTGAT+TGG | 0.334499 | 3_3:+76778645 | None:intergenic |
| TTCAGAAATGTTGTGCCTTT+AGG | 0.335105 | 3_3:-76782828 | Msa0474010:intron |
| ATTTCTTTAATTCTTTCCTT+GGG | 0.340101 | 3_3:+76780312 | None:intergenic |
| TTCAAGAGCTTGCTCAAATC+TGG | 0.345605 | 3_3:+76779624 | None:intergenic |
| ATCTTACCTTCCTCTTTGTA+AGG | 0.348042 | 3_3:+76780169 | None:intergenic |
| CTTTACACCCGAACAGCTTC+AGG | 0.349585 | 3_3:-76780469 | Msa0474010:CDS |
| CCTTTAGCGGTTTGGAAGAC+TGG | 0.351247 | 3_3:-76778673 | Msa0474010:CDS |
| CTCAAATCTGGCCTTGAATA+GGG | 0.356118 | 3_3:+76779636 | None:intergenic |
| TGCTCTATTCCTTGTCCTAA+AGG | 0.362024 | 3_3:+76782813 | None:intergenic |
| TTTATACGCCTGAAGCTGTT+CGG | 0.362329 | 3_3:+76780461 | None:intergenic |
| GCTCAAATCTGGCCTTGAAT+AGG | 0.363277 | 3_3:+76779635 | None:intergenic |
| CATGGATGCCTTTAGCGGTT+TGG | 0.367845 | 3_3:-76778681 | Msa0474010:CDS |
| AAGTTGAAAGAGAGATGAAA+TGG | 0.367950 | 3_3:+76783092 | None:intergenic |
| TTATACGCCTGAAGCTGTTC+GGG | 0.370216 | 3_3:+76780462 | None:intergenic |
| AACTTCAATCCAATCTCTTC+AGG | 0.372514 | 3_3:-76783074 | Msa0474010:intron |
| AGAAAGTGGAAGCCACTCTT+TGG | 0.372764 | 3_3:+76779515 | None:intergenic |
| GATTCCTCCAAACCATCATT+AGG | 0.373992 | 3_3:+76779424 | None:intergenic |
| ACTCATTCTTCAAACTGAAA+AGG | 0.379691 | 3_3:+76783186 | None:intergenic |
| GTCCTCCTCACCTTCTGATT+GGG | 0.380053 | 3_3:+76778646 | None:intergenic |
| GCCATTGCAGTTGGATCCTC+AGG | 0.380404 | 3_3:+76779544 | None:intergenic |
| GCCAAAGAAAAGGAAGAGTT+TGG | 0.388346 | 3_3:-76779319 | Msa0474010:CDS |
| GGAATCAGATCCTGCTGAAC+AGG | 0.388918 | 3_3:-76779407 | Msa0474010:CDS |
| TGTGTACACCGAAGTTATTT+AGG | 0.399084 | 3_3:-76778318 | Msa0474010:three_prime_UTR |
| AAGGGTTTACCTGAAGAGAT+TGG | 0.402994 | 3_3:+76783065 | None:intergenic |
| TGAGAAGGAATAACAGTAAG+AGG | 0.409015 | 3_3:+76778216 | None:intergenic |
| CTCATTCTTCAAACTGAAAA+GGG | 0.414892 | 3_3:+76783187 | None:intergenic |
| GACACGGTGAAGCTAAATTT+AGG | 0.418116 | 3_3:-76778952 | Msa0474010:CDS |
| AATAGAACCTAATGATGGTT+TGG | 0.420274 | 3_3:-76779431 | Msa0474010:CDS |
| AATACTCCACGAACACCAAC+TGG | 0.421248 | 3_3:+76780408 | None:intergenic |
| CAATGGCGGCAGTGAGGATA+AGG | 0.421625 | 3_3:+76783214 | None:intergenic |
| TATGTTCCAGTTGGTGTTCG+TGG | 0.423683 | 3_3:-76780414 | Msa0474010:CDS |
| GAGAGATGAAATGGGTTTGA+GGG | 0.425769 | 3_3:+76783101 | None:intergenic |
| AGAGAGATGAAATGGGTTTG+AGG | 0.426459 | 3_3:+76783100 | None:intergenic |
| CACCAAAGAGTTTGAGAGGC+AGG | 0.427775 | 3_3:-76778736 | Msa0474010:CDS |
| AACCAATCAACAATTTCTTC+AGG | 0.433306 | 3_3:+76778277 | None:intergenic |
| CTTGATATATTTATTAGAAG+TGG | 0.434170 | 3_3:-76778047 | Msa0474010:three_prime_UTR |
| AGTTTGAGAGGCAGGGAAGC+AGG | 0.434357 | 3_3:-76778728 | Msa0474010:CDS |
| GCTAAATTTAGGACGAATAT+GGG | 0.439861 | 3_3:-76778941 | Msa0474010:CDS |
| AACAATAAAAGCTATCGTTA+TGG | 0.440253 | 3_3:+76782760 | None:intergenic |
| TGCCGTGGTGGAGGCAGCTC+CGG | 0.440666 | 3_3:+76780504 | None:intergenic |
| TTTGAATGGATCCTTGTGTC+GGG | 0.442400 | 3_3:-76782718 | Msa0474010:CDS |
| AGAAGAATGCAGAAAGAGTC+TGG | 0.444428 | 3_3:-76782651 | Msa0474010:CDS |
| CAAGGAAAGAATTAAAGAAA+TGG | 0.444685 | 3_3:-76780310 | Msa0474010:CDS |
| GAGGTAGGTTCAAGGAAAGT+AGG | 0.447947 | 3_3:-76779039 | Msa0474010:CDS |
| CTATCGGCAGTCCGATGCTT+GGG | 0.449257 | 3_3:+76779178 | None:intergenic |
| CAAAGGAAGCTGATGAAGCT+TGG | 0.453830 | 3_3:-76778544 | Msa0474010:CDS |
| AGGTTAGAGGCTCAAGAGTT+CGG | 0.454485 | 3_3:-76779213 | Msa0474010:CDS |
| GGATAAGGATGGCGCGGCGG+AGG | 0.456392 | 3_3:+76783229 | None:intergenic |
| TATTGGAACAGAGAAGAGTA+TGG | 0.456496 | 3_3:-76779286 | Msa0474010:CDS |
| GTCAATTGCATTGAAGAAAG+TGG | 0.461024 | 3_3:+76779501 | None:intergenic |
| GCGGCGGAGGGAGTTGATTA+CGG | 0.461896 | 3_3:+76783242 | None:intergenic |
| GACTATGATGGTGAGGTTAG+AGG | 0.468968 | 3_3:-76779226 | Msa0474010:CDS |
| AGGATAAATAATACAAGTAT+TGG | 0.469445 | 3_3:-76779004 | Msa0474010:CDS |
| AGTTGAAAGAGAGATGAAAT+GGG | 0.472804 | 3_3:+76783093 | None:intergenic |
| GTAGAAGAGAAGGGTTTCAA+GGG | 0.475423 | 3_3:+76783295 | None:intergenic |
| TGCCTGAAGAAATTGTTGAT+TGG | 0.477215 | 3_3:-76778279 | Msa0474010:three_prime_UTR |
| TCTGGATCATGCCGTGGTGG+AGG | 0.477830 | 3_3:+76780495 | None:intergenic |
| AAAGGAAGCTGATGAAGCTT+GGG | 0.481393 | 3_3:-76778543 | Msa0474010:CDS |
| TTATATACAGGCCCTATTCA+AGG | 0.481490 | 3_3:-76779647 | Msa0474010:intron |
| AATGCAATTGACAAGAAAGA+TGG | 0.481999 | 3_3:-76779490 | Msa0474010:CDS |
| GGTGTTCGTGGAGTATTTGG+AGG | 0.482666 | 3_3:-76780402 | Msa0474010:CDS |
| TGGATGCTGGCCATTGCAGT+TGG | 0.483571 | 3_3:+76779535 | None:intergenic |
| AGTAGAAGAGAAGGGTTTCA+AGG | 0.484196 | 3_3:+76783294 | None:intergenic |
| ATTCTGGTATAGCATTTACT+TGG | 0.484390 | 3_3:+76778508 | None:intergenic |
| CCAGTCTTCCAAACCGCTAA+AGG | 0.489203 | 3_3:+76778673 | None:intergenic |
| TCAAGTACATCATGACTAGT+AGG | 0.489438 | 3_3:+76778065 | None:intergenic |
| AAACATAAAGAAAATAGAAC+AGG | 0.489664 | 3_3:-76779590 | Msa0474010:CDS |
| AGAGTCTGGTAAAACATTAA+GGG | 0.491117 | 3_3:-76782637 | Msa0474010:CDS |
| GGAAGCCACTCTTTGGATGC+TGG | 0.495190 | 3_3:+76779522 | None:intergenic |
| AGGTAGGTTCAAGGAAAGTA+GGG | 0.497194 | 3_3:-76779038 | Msa0474010:CDS |
| AGCTGAAGAGGCCAAAGAAA+AGG | 0.499259 | 3_3:-76779329 | Msa0474010:CDS |
| ATTCTCTTCATCGTCGCTAT+CGG | 0.500009 | 3_3:+76779162 | None:intergenic |
| CCCTACAAGTCAAAATAGTA+AGG | 0.500263 | 3_3:-76778600 | Msa0474010:CDS |
| GGACTCAAGAGGTGGTGATA+AGG | 0.500654 | 3_3:-76778627 | Msa0474010:CDS |
| GCTATCGGCAGTCCGATGCT+TGG | 0.508858 | 3_3:+76779177 | None:intergenic |
| AGAACAGGACCTGCGGCGGA+TGG | 0.509673 | 3_3:-76779575 | Msa0474010:CDS |
| TCAGAAACCACACACGACTC+TGG | 0.510038 | 3_3:-76778414 | Msa0474010:three_prime_UTR |
| GATCCATTCAAAAGATTCAA+CGG | 0.510157 | 3_3:+76782729 | None:intergenic |
| TGTTCGGGTGTAAAGAGCTC+TGG | 0.511414 | 3_3:+76780477 | None:intergenic |
| GATAAGGATGGCGCGGCGGA+GGG | 0.512390 | 3_3:+76783230 | None:intergenic |
| GAGCAGCAGCAGCGATGATG+AGG | 0.514342 | 3_3:-76778801 | Msa0474010:CDS |
| ACTTTGTTTGACAATCAAAA+CGG | 0.514945 | 3_3:-76778468 | Msa0474010:three_prime_UTR |
| TCTAGCTCTTCCTGTTCAGC+AGG | 0.518776 | 3_3:+76779397 | None:intergenic |
| TTGTCTCCACGGTTAACATA+AGG | 0.519546 | 3_3:+76779463 | None:intergenic |
| GACGATGGTGAGTGGCATCA+TGG | 0.520485 | 3_3:-76779118 | Msa0474010:CDS |
| GTGTCCATGGATGCCTTTAG+CGG | 0.520678 | 3_3:-76778686 | Msa0474010:CDS |
| AATGTGGGAGTCGGATTTGG+AGG | 0.524703 | 3_3:-76778870 | Msa0474010:CDS |
| CTGAACAGGAAGAGCTAGAT+CGG | 0.526672 | 3_3:-76779393 | Msa0474010:CDS |
| TGCAAAATATGCATCTCCAT+TGG | 0.528015 | 3_3:-76780374 | Msa0474010:CDS |
| GCTTAAGAAATATGAGCTAC+CGG | 0.528659 | 3_3:-76780523 | Msa0474010:CDS |
| TGAAGCTAGAGGTAGGTTCA+AGG | 0.529177 | 3_3:-76779047 | Msa0474010:CDS |
| CCGCACTAAATCCGTGTCCA+TGG | 0.531564 | 3_3:-76778699 | Msa0474010:CDS |
| TGCGTCGGAAGTAGAAGAGA+AGG | 0.532772 | 3_3:+76783285 | None:intergenic |
| AACAAGAATTATGTTCCAGT+TGG | 0.532863 | 3_3:-76780423 | Msa0474010:CDS |
| TCTTACCTTCCTCTTTGTAA+GGG | 0.535231 | 3_3:+76780170 | None:intergenic |
| GAACAGGACCTGCGGCGGAT+GGG | 0.538425 | 3_3:-76779574 | Msa0474010:CDS |
| TAGAAGAGAAGGGTTTCAAG+GGG | 0.539623 | 3_3:+76783296 | None:intergenic |
| GATTTACTCCCATCCGCCGC+AGG | 0.541197 | 3_3:+76779566 | None:intergenic |
| TTACTGACGGCTTGTCTCCA+CGG | 0.541347 | 3_3:+76779452 | None:intergenic |
| AGAACCTAATGATGGTTTGG+AGG | 0.543260 | 3_3:-76779428 | Msa0474010:CDS |
| CGAAGTTGAAAATGCAATGT+GGG | 0.549326 | 3_3:-76778885 | Msa0474010:CDS |
| CAAACCGCTAAAGGCATCCA+TGG | 0.549768 | 3_3:+76778682 | None:intergenic |
| ACCGAAGTTATTTAGGTGGG+TGG | 0.551390 | 3_3:-76778311 | Msa0474010:three_prime_UTR |
| CCCACCCACCTAAATAACTT+CGG | 0.554815 | 3_3:+76778310 | None:intergenic |
| TGAAGCTTGGGACAGTGACT+AGG | 0.557695 | 3_3:-76778531 | Msa0474010:exon |
| GCTGTCAACATCACTGTCAT+CGG | 0.559876 | 3_3:+76779087 | None:intergenic |
| AATGTTGTGCCTTTAGGACA+AGG | 0.561411 | 3_3:-76782822 | Msa0474010:CDS |
| TAAAGAATATGAAGCTGAAG+AGG | 0.562743 | 3_3:-76779341 | Msa0474010:CDS |
| TGGAACAGAGAAGAGTATGG+TGG | 0.564267 | 3_3:-76779283 | Msa0474010:CDS |
| TTTCTTTAATTCTTTCCTTG+GGG | 0.565613 | 3_3:+76780313 | None:intergenic |
| AATGCACCAAAGAGTTTGAG+AGG | 0.565918 | 3_3:-76778740 | Msa0474010:CDS |
| GAGGTAACATTATTGTGAGA+AGG | 0.567194 | 3_3:+76778201 | None:intergenic |
| TCATTAGGTTCTATTACTGA+CGG | 0.569181 | 3_3:+76779439 | None:intergenic |
| TCGGTTCATCGCTGATATAG+AGG | 0.570941 | 3_3:-76779374 | Msa0474010:CDS |
| TGAAAATGCAATGTGGGAGT+CGG | 0.574987 | 3_3:-76778879 | Msa0474010:CDS |
| AATAGAACCTTGAGGAGTTG+AGG | 0.579296 | 3_3:+76778179 | None:intergenic |
| TGTTTGACAATCAAAACGGA+TGG | 0.579451 | 3_3:-76778464 | Msa0474010:three_prime_UTR |
| CGGGGAATGTCAACGATGAG+AGG | 0.581892 | 3_3:-76782699 | Msa0474010:CDS |
| TCAGTAATAGAACCTAATGA+TGG | 0.582255 | 3_3:-76779436 | Msa0474010:CDS |
| AGCTTCATATTCTTTATCGG+CGG | 0.584618 | 3_3:+76779348 | None:intergenic |
| AACTTATGACTGACGAGGAG+CGG | 0.586837 | 3_3:-76782584 | Msa0474010:CDS |
| ACCAAAGAGTTTGAGAGGCA+GGG | 0.588416 | 3_3:-76778735 | Msa0474010:CDS |
| AATAATACAAGTATTGGCAA+TGG | 0.589479 | 3_3:-76778998 | Msa0474010:CDS |
| TCTAGAAATGATGACTATGA+TGG | 0.589821 | 3_3:-76779238 | Msa0474010:CDS |
| TCCTGAGGATCCAACTGCAA+TGG | 0.592648 | 3_3:-76779545 | Msa0474010:CDS |
| TGGTTGAGACAAAATCATCA+AGG | 0.593626 | 3_3:-76778259 | Msa0474010:three_prime_UTR |
| AGGAAAGAGTATGCGAAGCA+AGG | 0.594524 | 3_3:-76782679 | Msa0474010:CDS |
| TACACCGAAGTTATTTAGGT+GGG | 0.595132 | 3_3:-76778314 | Msa0474010:three_prime_UTR |
| CCGAAGTTATTTAGGTGGGT+GGG | 0.595385 | 3_3:-76778310 | Msa0474010:three_prime_UTR |
| GACTGGATGTCCCAATCAGA+AGG | 0.597113 | 3_3:-76778656 | Msa0474010:CDS |
| CGTTGACATTCCCCGACACA+AGG | 0.600701 | 3_3:+76782707 | None:intergenic |
| AGCAGCAGCAGCGATGATGA+GGG | 0.601546 | 3_3:-76778800 | Msa0474010:CDS |
| TGCTTGCAAGACTGAGTGGT+GGG | 0.602807 | 3_3:-76780281 | Msa0474010:CDS |
| TAATACCCTTACAAAGAGGA+AGG | 0.604277 | 3_3:-76780175 | Msa0474010:intron |
| GTTACCTCCTCAACTCCTCA+AGG | 0.605405 | 3_3:-76778186 | Msa0474010:intron |
| AGAATATACATCCCAAGCAT+CGG | 0.605468 | 3_3:-76779189 | Msa0474010:CDS |
| AAAACTATTACGATATTGAG+CGG | 0.607700 | 3_3:+76778763 | None:intergenic |
| CAGTCTCATGAAACTTCCAA+TGG | 0.613298 | 3_3:+76780358 | None:intergenic |
| GTAGGTTCAAGGAAAGTAGG+GGG | 0.613514 | 3_3:-76779036 | Msa0474010:CDS |
| TTGAATGGATCCTTGTGTCG+GGG | 0.613828 | 3_3:-76782717 | Msa0474010:CDS |
| AATGACTCGGTACATTTGAG+AGG | 0.617243 | 3_3:-76778845 | Msa0474010:CDS |
| AGCTCTGGATCATGCCGTGG+TGG | 0.620706 | 3_3:+76780492 | None:intergenic |
| GGTTGAGACAAAATCATCAA+GGG | 0.622964 | 3_3:-76778258 | Msa0474010:three_prime_UTR |
| GATGGCTCTGATGAAGCTAG+AGG | 0.623735 | 3_3:-76779058 | Msa0474010:CDS |
| CATCATGACTAGTAGGACAA+TGG | 0.625661 | 3_3:+76778072 | None:intergenic |
| GTTGGCGGTAATTTCTACCA+CGG | 0.628009 | 3_3:+76780217 | None:intergenic |
| GATGTCCCAATCAGAAGGTG+AGG | 0.630183 | 3_3:-76778651 | Msa0474010:CDS |
| GTCCCAATCAGAAGGTGAGG+AGG | 0.630743 | 3_3:-76778648 | Msa0474010:CDS |
| CCATAAGAAGAGATCACCAA+AGG | 0.633775 | 3_3:-76778561 | Msa0474010:CDS |
| ACGACGACGACGATGGTGAG+TGG | 0.634013 | 3_3:-76779126 | Msa0474010:CDS |
| TTGTTGTGACAACTTCCCCA+AGG | 0.637735 | 3_3:-76780328 | Msa0474010:CDS |
| CAGTGAGGATAAGGATGGCG+CGG | 0.638132 | 3_3:+76783223 | None:intergenic |
| GCGTCGGAAGTAGAAGAGAA+GGG | 0.638583 | 3_3:+76783286 | None:intergenic |
| GTACACCGAAGTTATTTAGG+TGG | 0.638591 | 3_3:-76778315 | Msa0474010:three_prime_UTR |
| GAAGGTGAGGAGGACTCAAG+AGG | 0.641359 | 3_3:-76778638 | Msa0474010:CDS |
| AATGGCCAGCATCCAAAGAG+TGG | 0.641691 | 3_3:-76779527 | Msa0474010:CDS |
| TCAATGCTTGCAAGACTGAG+TGG | 0.642842 | 3_3:-76780285 | Msa0474010:CDS |
| GGTAGGTTCAAGGAAAGTAG+GGG | 0.644041 | 3_3:-76779037 | Msa0474010:CDS |
| TACAAGTCAAAATAGTAAGG+TGG | 0.645026 | 3_3:-76778597 | Msa0474010:CDS |
| TACACTTCCAGAGTCGTGTG+TGG | 0.647458 | 3_3:+76778407 | None:intergenic |
| AATGGTGGTCAGAGCAGACA+CGG | 0.648459 | 3_3:-76778968 | Msa0474010:CDS |
| GGTGAGGAGGACTCAAGAGG+TGG | 0.651623 | 3_3:-76778635 | Msa0474010:CDS |
| AAAACAATCATCATGTTCCG+TGG | 0.652160 | 3_3:-76780234 | Msa0474010:CDS |
| GGCAATGGTCAAGTTAATGG+TGG | 0.652521 | 3_3:-76778983 | Msa0474010:CDS |
| CTATTAATACCCTTACAAAG+AGG | 0.653915 | 3_3:-76780179 | Msa0474010:CDS |
| GCTCTGATGAAGCTAGAGGT+AGG | 0.654685 | 3_3:-76779054 | Msa0474010:CDS |
| AGTGGCGGAGCAAAGTGCGT+CGG | 0.656485 | 3_3:+76783270 | None:intergenic |
| AAATAGAACAGGACCTGCGG+CGG | 0.657187 | 3_3:-76779579 | Msa0474010:CDS |
| ATTCTTCAAACTGAAAAGGG+AGG | 0.659494 | 3_3:+76783190 | None:intergenic |
| GGCGGCAGTGAGGATAAGGA+TGG | 0.660305 | 3_3:+76783218 | None:intergenic |
| TTGATTACGGAGGAGAGTGG+CGG | 0.661451 | 3_3:+76783255 | None:intergenic |
| AGAAAATAGAACAGGACCTG+CGG | 0.664826 | 3_3:-76779582 | Msa0474010:CDS |
| TACCGGAGCTGCCTCCACCA+CGG | 0.667902 | 3_3:-76780506 | Msa0474010:CDS |
| GAGTTGATTACGGAGGAGAG+TGG | 0.668179 | 3_3:+76783252 | None:intergenic |
| GCTAAAGGCATCCATGGACA+CGG | 0.670630 | 3_3:+76778688 | None:intergenic |
| AGAACCTTGAGGAGTTGAGG+AGG | 0.674677 | 3_3:+76778182 | None:intergenic |
| GGAGGACAATGGCGGCAGTG+AGG | 0.675006 | 3_3:+76783208 | None:intergenic |
| GGAAGTCCTTATGTTAACCG+TGG | 0.676008 | 3_3:-76779469 | Msa0474010:CDS |
| GCGAAGTTGAAAATGCAATG+TGG | 0.678148 | 3_3:-76778886 | Msa0474010:CDS |
| CCATGGACACGGATTTAGTG+CGG | 0.681554 | 3_3:+76778699 | None:intergenic |
| AAAGAGTATGCGAAGCAAGG+TGG | 0.683453 | 3_3:-76782676 | Msa0474010:CDS |
| AAATGATGACTATGATGGTG+AGG | 0.683700 | 3_3:-76779233 | Msa0474010:CDS |
| CTGAAAAGGGAGGACAATGG+CGG | 0.688318 | 3_3:+76783200 | None:intergenic |
| TGAGGATAAGGATGGCGCGG+CGG | 0.691932 | 3_3:+76783226 | None:intergenic |
| GGATTTGGAGGACAATGACT+CGG | 0.695707 | 3_3:-76778858 | Msa0474010:CDS |
| AAGAGCTCTGGATCATGCCG+TGG | 0.696702 | 3_3:+76780489 | None:intergenic |
| ATGCTTGCAAGACTGAGTGG+TGG | 0.703573 | 3_3:-76780282 | Msa0474010:CDS |
| AAACTGAAAAGGGAGGACAA+TGG | 0.724243 | 3_3:+76783197 | None:intergenic |
| GCGGAGGGAGTTGATTACGG+AGG | 0.725893 | 3_3:+76783245 | None:intergenic |
| GCGGATGGGAGTAAATCCTG+AGG | 0.727364 | 3_3:-76779560 | Msa0474010:CDS |
| GAAGAAACTTATGACTGACG+AGG | 0.727589 | 3_3:-76782589 | Msa0474010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAATATAAACTTTA+AGG | + | chr3_3:76778346-76778365 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTAAGAT+TGG | - | chr3_3:76778397-76778416 | Msa0474010:three_prime_UTR | 10.0% |
| !!! | ATATTTTTGATTTAATTAGT+TGG | + | chr3_3:76779481-76779500 | None:intergenic | 10.0% |
| !!! | AATTATCATTTTCATTACTT+TGG | + | chr3_3:76779130-76779149 | None:intergenic | 15.0% |
| !! | ATAAACAAAAAATCTACAAA+AGG | + | chr3_3:76779372-76779391 | None:intergenic | 15.0% |
| !!! | TCTACTACAATTTTTATTTT+TGG | + | chr3_3:76779539-76779558 | None:intergenic | 15.0% |
| !!! | TCTCAATTAAAATTGTTTTA+TGG | - | chr3_3:76779972-76779991 | Msa0474010:intron | 15.0% |
| !!! | AAAATTGTTTTATGGTTTAA+AGG | - | chr3_3:76779980-76779999 | Msa0474010:intron | 15.0% |
| !!! | TTAATAGGTATCAAATTTTT+GGG | + | chr3_3:76781132-76781151 | None:intergenic | 15.0% |
| !!! | ATTAATAGGTATCAAATTTT+TGG | + | chr3_3:76781133-76781152 | None:intergenic | 15.0% |
| !! | GTATTATATTAGTAATTTGA+AGG | + | chr3_3:76781438-76781457 | None:intergenic | 15.0% |
| !! | GAATACAAAATTGAAGTAAA+CGG | + | chr3_3:76778287-76778306 | None:intergenic | 20.0% |
| !! | TTTGTTAATTGGTATTTCAT+AGG | - | chr3_3:76778426-76778445 | Msa0474010:three_prime_UTR | 20.0% |
| !! | GATTTATGTATTCGAATTTA+TGG | - | chr3_3:76778887-76778906 | Msa0474010:CDS | 20.0% |
| !! | AACGTGATATACTTAAAATT+TGG | + | chr3_3:76779031-76779050 | None:intergenic | 20.0% |
| !! | TAGACATTAGAAAGTTTAAT+TGG | - | chr3_3:76779065-76779084 | Msa0474010:CDS | 20.0% |
| !! | ATTGTAAATGTTGTATAGAT+AGG | - | chr3_3:76780153-76780172 | Msa0474010:intron | 20.0% |
| !! | AAAAACAGTAGTATTGTTTA+AGG | + | chr3_3:76780213-76780232 | None:intergenic | 20.0% |
| !! | ACAATTACTTAAAACTGATA+AGG | + | chr3_3:76780513-76780532 | None:intergenic | 20.0% |
| !! | ATTTCTTTAATTCTTTCCTT+GGG | + | chr3_3:76781015-76781034 | None:intergenic | 20.0% |
| !!! | TAACTGATAATGAACAATAT+TGG | + | chr3_3:76781215-76781234 | None:intergenic | 20.0% |
| !! | AAACATAAAGAAAATAGAAC+AGG | - | chr3_3:76781734-76781753 | Msa0474010:intron | 20.0% |
| !! | AGGATAAATAATACAAGTAT+TGG | - | chr3_3:76782320-76782339 | Msa0474010:intron | 20.0% |
| !! | TTAAAAACTACAATGAATTC+TGG | + | chr3_3:76782835-76782854 | None:intergenic | 20.0% |
| !! | CTTGATATATTTATTAGAAG+TGG | - | chr3_3:76783277-76783296 | Msa0474010:five_prime_UTR | 20.0% |
| ! | AAATTGAAGTAAACGGAAAA+GGG | + | chr3_3:76778280-76778299 | None:intergenic | 25.0% |
| ! | AAAATTGAAGTAAACGGAAA+AGG | + | chr3_3:76778281-76778300 | None:intergenic | 25.0% |
| !! | TTTAAGGAAAAAGCGTAAAA+GGG | + | chr3_3:76778330-76778349 | None:intergenic | 25.0% |
| !! | ATTGGCTTACATTTGTTAAT+TGG | - | chr3_3:76778415-76778434 | Msa0474010:three_prime_UTR | 25.0% |
| ! | AATTGGTATTTCATAGGAAT+AGG | - | chr3_3:76778432-76778451 | Msa0474010:three_prime_UTR | 25.0% |
| !!! | ATTCGATGTTTTTGTCTTTT+TGG | - | chr3_3:76778473-76778492 | Msa0474010:three_prime_UTR | 25.0% |
| ! | AACAATAAAAGCTATCGTTA+TGG | + | chr3_3:76778567-76778586 | None:intergenic | 25.0% |
| ! | GTATTCGAATTTATGGTTTA+AGG | - | chr3_3:76778894-76778913 | Msa0474010:CDS | 25.0% |
| ! | AATTGTTAAGATTAGAACAG+GGG | + | chr3_3:76778985-76779004 | None:intergenic | 25.0% |
| ! | CAATTGTTAAGATTAGAACA+GGG | + | chr3_3:76778986-76779005 | None:intergenic | 25.0% |
| ! | CTGTTCTAATCTTAACAATT+GGG | - | chr3_3:76778985-76779004 | Msa0474010:CDS | 25.0% |
| !! | GTATCTTTTCTCTCTTTTAT+GGG | + | chr3_3:76779511-76779530 | None:intergenic | 25.0% |
| !! | TGTATCTTTTCTCTCTTTTA+TGG | + | chr3_3:76779512-76779531 | None:intergenic | 25.0% |
| ! | ATTATACCAAACCTTTATAC+AGG | - | chr3_3:76779572-76779591 | Msa0474010:CDS | 25.0% |
| !!! | ATTTATTTTGCCGCAATTTT+GGG | + | chr3_3:76779714-76779733 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATTGAGAAGCA+CGG | + | chr3_3:76779968-76779987 | None:intergenic | 25.0% |
| ! | CAACTTATGTTGTAAAGTAT+TGG | - | chr3_3:76780057-76780076 | Msa0474010:intron | 25.0% |
| !!! | AAGTTTATTCAAGCTGATTT+TGG | - | chr3_3:76780130-76780149 | Msa0474010:intron | 25.0% |
| !!! | TACAAGTTTGTTATAAGTTG+TGG | + | chr3_3:76780365-76780384 | None:intergenic | 25.0% |
| ! | CAATGAAGTAGTTAAATTCT+TGG | + | chr3_3:76780560-76780579 | None:intergenic | 25.0% |
| ! | CAAGAATTTAACTACTTCAT+TGG | - | chr3_3:76780558-76780577 | Msa0474010:CDS | 25.0% |
| !!! | GTCTATGTTTAATTTTGTTG+TGG | - | chr3_3:76780688-76780707 | Msa0474010:intron | 25.0% |
| ! | TTTCTTTAATTCTTTCCTTG+GGG | + | chr3_3:76781014-76781033 | None:intergenic | 25.0% |
| ! | CATTTCTTTAATTCTTTCCT+TGG | + | chr3_3:76781016-76781035 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAATTAAAGAAA+TGG | - | chr3_3:76781014-76781033 | Msa0474010:intron | 25.0% |
| ! | AATCATGAACTGTCATATTT+AGG | - | chr3_3:76781187-76781206 | Msa0474010:intron | 25.0% |
| !! | TTGAAAGTAAACAGTAGTTT+TGG | - | chr3_3:76781244-76781263 | Msa0474010:intron | 25.0% |
| !! | TGAAAATGCTTTTGTGATTA+TGG | + | chr3_3:76781322-76781341 | None:intergenic | 25.0% |
| !! | TGATTGACTTTAATGTTTCA+AGG | - | chr3_3:76781574-76781593 | Msa0474010:intron | 25.0% |
| ! | GTTTAATAGATACCATAACT+AGG | + | chr3_3:76781615-76781634 | None:intergenic | 25.0% |
| ! | TTGTTACCGTTATTATATAC+AGG | - | chr3_3:76781665-76781684 | Msa0474010:intron | 25.0% |
| ! | TTCAGCTTCATATTCTTTAT+CGG | + | chr3_3:76781982-76782001 | None:intergenic | 25.0% |
| !!! | AATAATACAAGTATTGGCAA+TGG | - | chr3_3:76782326-76782345 | Msa0474010:intron | 25.0% |
| ! | AAAACTATTACGATATTGAG+CGG | + | chr3_3:76782564-76782583 | None:intergenic | 25.0% |
| !! | ACTTTGTTTGACAATCAAAA+CGG | - | chr3_3:76782856-76782875 | Msa0474010:intron | 25.0% |
| CTCATTCTTCAAACTGAAAA+GGG | + | chr3_3:76778140-76778159 | None:intergenic | 30.0% | |
| ACTCATTCTTCAAACTGAAA+AGG | + | chr3_3:76778141-76778160 | None:intergenic | 30.0% | |
| AGTTGAAAGAGAGATGAAAT+GGG | + | chr3_3:76778234-76778253 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAGATGAAA+TGG | + | chr3_3:76778235-76778254 | None:intergenic | 30.0% | |
| ! | TTAAGGAAAAAGCGTAAAAG+GGG | + | chr3_3:76778329-76778348 | None:intergenic | 30.0% |
| ! | CTTTAAGGAAAAAGCGTAAA+AGG | + | chr3_3:76778331-76778350 | None:intergenic | 30.0% |
| ! | AAACCGTTGAATCTTTTGAA+TGG | - | chr3_3:76778592-76778611 | Msa0474010:CDS | 30.0% |
| GATCCATTCAAAAGATTCAA+CGG | + | chr3_3:76778598-76778617 | None:intergenic | 30.0% | |
| AAGAGTCTGGTAAAACATTA+AGG | - | chr3_3:76778686-76778705 | Msa0474010:CDS | 30.0% | |
| AGAGTCTGGTAAAACATTAA+GGG | - | chr3_3:76778687-76778706 | Msa0474010:CDS | 30.0% | |
| CAACATCTCAAAGCAATATA+TGG | + | chr3_3:76778857-76778876 | None:intergenic | 30.0% | |
| AAAGCCTTCTTAAACACTTT+AGG | - | chr3_3:76778959-76778978 | Msa0474010:CDS | 30.0% | |
| CCAATTGTTAAGATTAGAAC+AGG | + | chr3_3:76778987-76779006 | None:intergenic | 30.0% | |
| CCTGTTCTAATCTTAACAAT+TGG | - | chr3_3:76778984-76779003 | Msa0474010:CDS | 30.0% | |
| TTGATGCATGATTGATCATA+AGG | - | chr3_3:76779149-76779168 | Msa0474010:CDS | 30.0% | |
| TGATGCATGATTGATCATAA+GGG | - | chr3_3:76779150-76779169 | Msa0474010:CDS | 30.0% | |
| ATCATAAGGGGATAATTTGA+TGG | - | chr3_3:76779163-76779182 | Msa0474010:CDS | 30.0% | |
| AGAGTGATTCAAAATAGACA+TGG | - | chr3_3:76779193-76779212 | Msa0474010:CDS | 30.0% | |
| AAAATAGACATGGAACTGTT+AGG | - | chr3_3:76779203-76779222 | Msa0474010:CDS | 30.0% | |
| TACATTATGAGTATAGAAGC+TGG | - | chr3_3:76779266-76779285 | Msa0474010:CDS | 30.0% | |
| ACATTATGAGTATAGAAGCT+GGG | - | chr3_3:76779267-76779286 | Msa0474010:CDS | 30.0% | |
| !! | TTTTGTTTATCTTGCCATCA+CGG | - | chr3_3:76779382-76779401 | Msa0474010:CDS | 30.0% |
| ! | AGTTCTCTTTGTTCTAAATG+CGG | + | chr3_3:76779691-76779710 | None:intergenic | 30.0% |
| !!! | GATTTATTTTGCCGCAATTT+TGG | + | chr3_3:76779715-76779734 | None:intergenic | 30.0% |
| ! | ATCCTTTATTTGTGTGTAGT+CGG | - | chr3_3:76779804-76779823 | Msa0474010:intron | 30.0% |
| TTTCTTCTGAATTCTGATCT+GGG | - | chr3_3:76779861-76779880 | Msa0474010:intron | 30.0% | |
| ! | TTTTATGGTTTAAAGGCTCA+TGG | - | chr3_3:76779987-76780006 | Msa0474010:intron | 30.0% |
| ACAAACTTGTATGACAATTC+TGG | - | chr3_3:76780374-76780393 | Msa0474010:CDS | 30.0% | |
| !! | TGGCGATTTTAACAAAATTG+AGG | - | chr3_3:76780394-76780413 | Msa0474010:CDS | 30.0% |
| !!! | GCTTGAAAATTTTCAAGTCA+CGG | + | chr3_3:76780619-76780638 | None:intergenic | 30.0% |
| CTTCAGGCGTATAAAAAAAT+TGG | - | chr3_3:76780871-76780890 | Msa0474010:intron | 30.0% | |
| AACAAGAATTATGTTCCAGT+TGG | - | chr3_3:76780901-76780920 | Msa0474010:intron | 30.0% | |
| !!! | TAGGTATCAAATTTTTGGGT+TGG | + | chr3_3:76781128-76781147 | None:intergenic | 30.0% |
| !! | CTCTTTGTAAGGGTATTAAT+AGG | + | chr3_3:76781147-76781166 | None:intergenic | 30.0% |
| CTATTAATACCCTTACAAAG+AGG | - | chr3_3:76781145-76781164 | Msa0474010:intron | 30.0% | |
| TTGTGATTATGGTCAATTCA+AGG | + | chr3_3:76781311-76781330 | None:intergenic | 30.0% | |
| !!! | CACAAAAGCATTTTCAAATG+TGG | - | chr3_3:76781326-76781345 | Msa0474010:intron | 30.0% |
| ACTAACGAAAGAACATTTGA+TGG | + | chr3_3:76781372-76781391 | None:intergenic | 30.0% | |
| CTAATATAATACACACTCAG+TGG | - | chr3_3:76781446-76781465 | Msa0474010:intron | 30.0% | |
| TTGTGAACATTCAGAAGTTT+CGG | - | chr3_3:76781483-76781502 | Msa0474010:intron | 30.0% | |
| CTAAAATTACTGTTTGCTCT+TGG | - | chr3_3:76781531-76781550 | Msa0474010:intron | 30.0% | |
| GTTTCAAGGACAAAAGAATT+TGG | - | chr3_3:76781588-76781607 | Msa0474010:intron | 30.0% | |
| AAAGAATTTGGTCCTAGTTA+TGG | - | chr3_3:76781600-76781619 | Msa0474010:intron | 30.0% | |
| ATAGGGCCTGTATATAATAA+CGG | + | chr3_3:76781674-76781693 | None:intergenic | 30.0% | |
| AATGCAATTGACAAGAAAGA+TGG | - | chr3_3:76781834-76781853 | Msa0474010:intron | 30.0% | |
| TCATTAGGTTCTATTACTGA+CGG | + | chr3_3:76781888-76781907 | None:intergenic | 30.0% | |
| TCAGTAATAGAACCTAATGA+TGG | - | chr3_3:76781888-76781907 | Msa0474010:intron | 30.0% | |
| AATAGAACCTAATGATGGTT+TGG | - | chr3_3:76781893-76781912 | Msa0474010:intron | 30.0% | |
| TAAAGAATATGAAGCTGAAG+AGG | - | chr3_3:76781983-76782002 | Msa0474010:intron | 30.0% | |
| AGTTTGGAAGACTTAGATAT+TGG | - | chr3_3:76782021-76782040 | Msa0474010:intron | 30.0% | |
| TCTAGAAATGATGACTATGA+TGG | - | chr3_3:76782086-76782105 | Msa0474010:intron | 30.0% | |
| ! | AGCTAAATTTAGGACGAATA+TGG | - | chr3_3:76782382-76782401 | Msa0474010:intron | 30.0% |
| ! | GCTAAATTTAGGACGAATAT+GGG | - | chr3_3:76782383-76782402 | Msa0474010:intron | 30.0% |
| !!! | CCTTACTATTTTGACTTGTA+GGG | + | chr3_3:76782727-76782746 | None:intergenic | 30.0% |
| !!! | ACCTTACTATTTTGACTTGT+AGG | + | chr3_3:76782728-76782747 | None:intergenic | 30.0% |
| TACAAGTCAAAATAGTAAGG+TGG | - | chr3_3:76782727-76782746 | Msa0474010:CDS | 30.0% | |
| ATTCTGGTATAGCATTTACT+TGG | + | chr3_3:76782819-76782838 | None:intergenic | 30.0% | |
| TTTGTTCAGATGTGTACTTT+AGG | - | chr3_3:76782956-76782975 | Msa0474010:intron | 30.0% | |
| TTGTTCAGATGTGTACTTTA+GGG | - | chr3_3:76782957-76782976 | Msa0474010:intron | 30.0% | |
| AACCAATCAACAATTTCTTC+AGG | + | chr3_3:76783050-76783069 | None:intergenic | 30.0% | |
| ATTCTTCAAACTGAAAAGGG+AGG | + | chr3_3:76778137-76778156 | None:intergenic | 35.0% | |
| AACTTCAATCCAATCTCTTC+AGG | - | chr3_3:76778250-76778269 | Msa0474010:three_prime_UTR | 35.0% | |
| AAAGCGTAAAAGGGGTTTAA+GGG | + | chr3_3:76778321-76778340 | None:intergenic | 35.0% | |
| ! | AAAAGCGTAAAAGGGGTTTA+AGG | + | chr3_3:76778322-76778341 | None:intergenic | 35.0% |
| TTCACCAAGATTCTAGTCTA+AGG | - | chr3_3:76778368-76778387 | Msa0474010:three_prime_UTR | 35.0% | |
| ACAACCTTAGACTAGAATCT+TGG | + | chr3_3:76778375-76778394 | None:intergenic | 35.0% | |
| TTCAGAAATGTTGTGCCTTT+AGG | - | chr3_3:76778496-76778515 | Msa0474010:three_prime_UTR | 35.0% | |
| ! | TTTTGAATGGATCCTTGTGT+CGG | - | chr3_3:76778605-76778624 | Msa0474010:CDS | 35.0% |
| TCGACAAACAGTTATTAGAC+GGG | + | chr3_3:76778803-76778822 | None:intergenic | 35.0% | |
| GTCGACAAACAGTTATTAGA+CGG | + | chr3_3:76778804-76778823 | None:intergenic | 35.0% | |
| GATGCATGATTGATCATAAG+GGG | - | chr3_3:76779151-76779170 | Msa0474010:CDS | 35.0% | |
| GATTGAGATTCTGTCAAGAA+GGG | - | chr3_3:76779225-76779244 | Msa0474010:CDS | 35.0% | |
| ATTGAGATTCTGTCAAGAAG+GGG | - | chr3_3:76779226-76779245 | Msa0474010:CDS | 35.0% | |
| TTTGTTTATCTTGCCATCAC+GGG | - | chr3_3:76779383-76779402 | Msa0474010:CDS | 35.0% | |
| AAGCTTCCTGTATAAAGGTT+TGG | + | chr3_3:76779581-76779600 | None:intergenic | 35.0% | |
| AAAGAGAACTCCCAAAATTG+CGG | - | chr3_3:76779701-76779720 | Msa0474010:intron | 35.0% | |
| AATTGCGGCAAAATAAATCC+AGG | - | chr3_3:76779716-76779735 | Msa0474010:intron | 35.0% | |
| TCAGACAAAATTAAACGCTG+TGG | - | chr3_3:76779753-76779772 | Msa0474010:intron | 35.0% | |
| TTTATTTGTGTGTAGTCGGT+GGG | - | chr3_3:76779808-76779827 | Msa0474010:intron | 35.0% | |
| GTTTCTTCTGAATTCTGATC+TGG | - | chr3_3:76779860-76779879 | Msa0474010:intron | 35.0% | |
| !! | TTTTAATTGAGAAGCACGGT+GGG | + | chr3_3:76779964-76779983 | None:intergenic | 35.0% |
| !!! | ATTTTAATTGAGAAGCACGG+TGG | + | chr3_3:76779965-76779984 | None:intergenic | 35.0% |
| GTGAAAGTAGTAAGCAGAAT+TGG | - | chr3_3:76780276-76780295 | Msa0474010:CDS | 35.0% | |
| ! | TTTGTTATAAGTTGTGGCCA+TGG | + | chr3_3:76780359-76780378 | None:intergenic | 35.0% |
| GCTTAAGAAATATGAGCTAC+CGG | - | chr3_3:76780801-76780820 | Msa0474010:intron | 35.0% | |
| TGCAAAATATGCATCTCCAT+TGG | - | chr3_3:76780950-76780969 | Msa0474010:intron | 35.0% | |
| AAAACAATCATCATGTTCCG+TGG | - | chr3_3:76781090-76781109 | Msa0474010:intron | 35.0% | |
| !!! | GTATCAAATTTTTGGGTTGG+CGG | + | chr3_3:76781125-76781144 | None:intergenic | 35.0% |
| TAATACCCTTACAAAGAGGA+AGG | - | chr3_3:76781149-76781168 | Msa0474010:intron | 35.0% | |
| TCTTACCTTCCTCTTTGTAA+GGG | + | chr3_3:76781157-76781176 | None:intergenic | 35.0% | |
| ATCTTACCTTCCTCTTTGTA+AGG | + | chr3_3:76781158-76781177 | None:intergenic | 35.0% | |
| ! | TGATGGACAAAACTGACTAA+CGG | + | chr3_3:76781355-76781374 | None:intergenic | 35.0% |
| TGTTCTTTCGTTAGTCAGTT+TGG | - | chr3_3:76781377-76781396 | Msa0474010:intron | 35.0% | |
| TAATGCAAGACACACATTCA+AGG | + | chr3_3:76781404-76781423 | None:intergenic | 35.0% | |
| TTATATACAGGCCCTATTCA+AGG | - | chr3_3:76781677-76781696 | Msa0474010:intron | 35.0% | |
| GTCAATTGCATTGAAGAAAG+TGG | + | chr3_3:76781826-76781845 | None:intergenic | 35.0% | |
| AGCTTCATATTCTTTATCGG+CGG | + | chr3_3:76781979-76781998 | None:intergenic | 35.0% | |
| ! | TCCAAACTCTTCCTTTTCTT+TGG | + | chr3_3:76782009-76782028 | None:intergenic | 35.0% |
| TATTGGAACAGAGAAGAGTA+TGG | - | chr3_3:76782038-76782057 | Msa0474010:intron | 35.0% | |
| ! | AAATGATGACTATGATGGTG+AGG | - | chr3_3:76782091-76782110 | Msa0474010:intron | 35.0% |
| AGAATATACATCCCAAGCAT+CGG | - | chr3_3:76782135-76782154 | Msa0474010:intron | 35.0% | |
| ! | GATGTTGACAGCAATTTTGA+TGG | - | chr3_3:76782248-76782267 | Msa0474010:intron | 35.0% |
| ATTGGCAATGGTCAAGTTAA+TGG | - | chr3_3:76782338-76782357 | Msa0474010:intron | 35.0% | |
| CGAAGTTGAAAATGCAATGT+GGG | - | chr3_3:76782439-76782458 | Msa0474010:intron | 35.0% | |
| CCCTACAAGTCAAAATAGTA+AGG | - | chr3_3:76782724-76782743 | Msa0474010:CDS | 35.0% | |
| TGTTTGACAATCAAAACGGA+TGG | - | chr3_3:76782860-76782879 | Msa0474010:intron | 35.0% | |
| TGTGTACACCGAAGTTATTT+AGG | - | chr3_3:76783006-76783025 | Msa0474010:intron | 35.0% | |
| TACACCGAAGTTATTTAGGT+GGG | - | chr3_3:76783010-76783029 | Msa0474010:intron | 35.0% | |
| TGCCTGAAGAAATTGTTGAT+TGG | - | chr3_3:76783045-76783064 | Msa0474010:intron | 35.0% | |
| TGGTTGAGACAAAATCATCA+AGG | - | chr3_3:76783065-76783084 | Msa0474010:intron | 35.0% | |
| GGTTGAGACAAAATCATCAA+GGG | - | chr3_3:76783066-76783085 | Msa0474010:intron | 35.0% | |
| TGAGAAGGAATAACAGTAAG+AGG | + | chr3_3:76783111-76783130 | None:intergenic | 35.0% | |
| GAGGTAACATTATTGTGAGA+AGG | + | chr3_3:76783126-76783145 | None:intergenic | 35.0% | |
| TGAGAAGGAATAACAGTAAG+AGG | + | chr3_3:76783111-76783130 | None:intergenic | 35.0% | |
| GAGGTAACATTATTGTGAGA+AGG | + | chr3_3:76783126-76783145 | None:intergenic | 35.0% | |
| TCAAGTACATCATGACTAGT+AGG | + | chr3_3:76783262-76783281 | None:intergenic | 35.0% | |
| TAGAAGAGAAGGGTTTCAAG+GGG | + | chr3_3:76778031-76778050 | None:intergenic | 40.0% | |
| GTAGAAGAGAAGGGTTTCAA+GGG | + | chr3_3:76778032-76778051 | None:intergenic | 40.0% | |
| AGTAGAAGAGAAGGGTTTCA+AGG | + | chr3_3:76778033-76778052 | None:intergenic | 40.0% | |
| AAACTGAAAAGGGAGGACAA+TGG | + | chr3_3:76778130-76778149 | None:intergenic | 40.0% | |
| ! | GAGAGATGAAATGGGTTTGA+GGG | + | chr3_3:76778226-76778245 | None:intergenic | 40.0% |
| ! | AGAGAGATGAAATGGGTTTG+AGG | + | chr3_3:76778227-76778246 | None:intergenic | 40.0% |
| AAGGGTTTACCTGAAGAGAT+TGG | + | chr3_3:76778262-76778281 | None:intergenic | 40.0% | |
| !! | AATGTTGTGCCTTTAGGACA+AGG | - | chr3_3:76778502-76778521 | Msa0474010:three_prime_UTR | 40.0% |
| TGCTCTATTCCTTGTCCTAA+AGG | + | chr3_3:76778514-76778533 | None:intergenic | 40.0% | |
| TTTGAATGGATCCTTGTGTC+GGG | - | chr3_3:76778606-76778625 | Msa0474010:CDS | 40.0% | |
| AGAAGAATGCAGAAAGAGTC+TGG | - | chr3_3:76778673-76778692 | Msa0474010:CDS | 40.0% | |
| GAAGAAACTTATGACTGACG+AGG | - | chr3_3:76778735-76778754 | Msa0474010:CDS | 40.0% | |
| GGATTGAGATTCTGTCAAGA+AGG | - | chr3_3:76779224-76779243 | Msa0474010:CDS | 40.0% | |
| GTATAGAAGCTGGGTTTAAC+AGG | - | chr3_3:76779276-76779295 | Msa0474010:CDS | 40.0% | |
| !! | TGGGTTTAACAGGTGTTGAA+TGG | - | chr3_3:76779286-76779305 | Msa0474010:CDS | 40.0% |
| ACAAAAGGCTAGCGAAAACA+TGG | + | chr3_3:76779357-76779376 | None:intergenic | 40.0% | |
| TTGTTTATCTTGCCATCACG+GGG | - | chr3_3:76779384-76779403 | Msa0474010:CDS | 40.0% | |
| AGCTCAAGCTTCCTGTATAA+AGG | + | chr3_3:76779586-76779605 | None:intergenic | 40.0% | |
| TGGTAAAGCTTTCGTCAATG+CGG | + | chr3_3:76779643-76779662 | None:intergenic | 40.0% | |
| ! | CTTTGTTCTAAATGCGGCAT+GGG | + | chr3_3:76779685-76779704 | None:intergenic | 40.0% |
| ! | TCTTTGTTCTAAATGCGGCA+TGG | + | chr3_3:76779686-76779705 | None:intergenic | 40.0% |
| CTGAACAGAAATTACCTTCC+TGG | + | chr3_3:76779737-76779756 | None:intergenic | 40.0% | |
| ! | CACCGACTACACACAAATAA+AGG | + | chr3_3:76779809-76779828 | None:intergenic | 40.0% |
| ! | CTTTATTTGTGTGTAGTCGG+TGG | - | chr3_3:76779807-76779826 | Msa0474010:intron | 40.0% |
| GGCCAAAGTCATGAAAGTTT+GGG | - | chr3_3:76779882-76779901 | Msa0474010:intron | 40.0% | |
| ! | TTTAATTGAGAAGCACGGTG+GGG | + | chr3_3:76779963-76779982 | None:intergenic | 40.0% |
| GTGCTCGTTATATGATCTCT+TGG | - | chr3_3:76780710-76780729 | Msa0474010:intron | 40.0% | |
| TTTGCCTGCAAACAGTTGAA+GGG | + | chr3_3:76780754-76780773 | None:intergenic | 40.0% | |
| TTTATACGCCTGAAGCTGTT+CGG | + | chr3_3:76780866-76780885 | None:intergenic | 40.0% | |
| CAGTCTCATGAAACTTCCAA+TGG | + | chr3_3:76780969-76780988 | None:intergenic | 40.0% | |
| ATGGTCAATTCAAGGACTAC+AGG | + | chr3_3:76781303-76781322 | None:intergenic | 40.0% | |
| GTGTCTTGCATTAGTCAGTT+TGG | - | chr3_3:76781411-76781430 | Msa0474010:intron | 40.0% | |
| !! | CTCAAATCTGGCCTTGAATA+GGG | + | chr3_3:76781691-76781710 | None:intergenic | 40.0% |
| ! | TTCAAGAGCTTGCTCAAATC+TGG | + | chr3_3:76781703-76781722 | None:intergenic | 40.0% |
| AGAAAATAGAACAGGACCTG+CGG | - | chr3_3:76781742-76781761 | Msa0474010:intron | 40.0% | |
| TTGTCTCCACGGTTAACATA+AGG | + | chr3_3:76781864-76781883 | None:intergenic | 40.0% | |
| ! | AGAACCTAATGATGGTTTGG+AGG | - | chr3_3:76781896-76781915 | Msa0474010:intron | 40.0% |
| GATTCCTCCAAACCATCATT+AGG | + | chr3_3:76781903-76781922 | None:intergenic | 40.0% | |
| GCCAAAGAAAAGGAAGAGTT+TGG | - | chr3_3:76782005-76782024 | Msa0474010:intron | 40.0% | |
| ATTCTCTTCATCGTCGCTAT+CGG | + | chr3_3:76782165-76782184 | None:intergenic | 40.0% | |
| AGGTAGGTTCAAGGAAAGTA+GGG | - | chr3_3:76782286-76782305 | Msa0474010:intron | 40.0% | |
| GACACGGTGAAGCTAAATTT+AGG | - | chr3_3:76782372-76782391 | Msa0474010:intron | 40.0% | |
| GCGAAGTTGAAAATGCAATG+TGG | - | chr3_3:76782438-76782457 | Msa0474010:intron | 40.0% | |
| TGAAAATGCAATGTGGGAGT+CGG | - | chr3_3:76782445-76782464 | Msa0474010:intron | 40.0% | |
| !! | AATGACTCGGTACATTTGAG+AGG | - | chr3_3:76782479-76782498 | Msa0474010:intron | 40.0% |
| AATGCACCAAAGAGTTTGAG+AGG | - | chr3_3:76782584-76782603 | Msa0474010:CDS | 40.0% | |
| ! | CCTTTGGTGATCTCTTCTTA+TGG | + | chr3_3:76782766-76782785 | None:intergenic | 40.0% |
| CCATAAGAAGAGATCACCAA+AGG | - | chr3_3:76782763-76782782 | Msa0474010:CDS | 40.0% | |
| AAAGGAAGCTGATGAAGCTT+GGG | - | chr3_3:76782781-76782800 | Msa0474010:CDS | 40.0% | |
| ! | GTTTCTGAAAAACGAGAGGT+GGG | + | chr3_3:76782898-76782917 | None:intergenic | 40.0% |
| ! | TGTGGTTTCTGAAAAACGAG+AGG | + | chr3_3:76782902-76782921 | None:intergenic | 40.0% |
| GTACACCGAAGTTATTTAGG+TGG | - | chr3_3:76783009-76783028 | Msa0474010:intron | 40.0% | |
| AATAGAACCTTGAGGAGTTG+AGG | + | chr3_3:76783148-76783167 | None:intergenic | 40.0% | |
| CTCAAGGTTCTATTGTCCTA+CGG | - | chr3_3:76783154-76783173 | Msa0474010:exon | 40.0% | |
| TCAAGGTTCTATTGTCCTAC+GGG | - | chr3_3:76783155-76783174 | Msa0474010:exon | 40.0% | |
| TACATTAAGCTTCATCCCGT+AGG | + | chr3_3:76783173-76783192 | None:intergenic | 40.0% | |
| CATCATGACTAGTAGGACAA+TGG | + | chr3_3:76783255-76783274 | None:intergenic | 40.0% | |
| TTGAATGGATCCTTGTGTCG+GGG | - | chr3_3:76778607-76778626 | Msa0474010:CDS | 45.0% | |
| ! | AGGAAAGAGTATGCGAAGCA+AGG | - | chr3_3:76778645-76778664 | Msa0474010:CDS | 45.0% |
| ! | AAAGAGTATGCGAAGCAAGG+TGG | - | chr3_3:76778648-76778667 | Msa0474010:CDS | 45.0% |
| AACTTATGACTGACGAGGAG+CGG | - | chr3_3:76778740-76778759 | Msa0474010:CDS | 45.0% | |
| ! | GGGGCCTAAAGTGTTTAAGA+AGG | + | chr3_3:76778966-76778985 | None:intergenic | 45.0% |
| TGTTTATCTTGCCATCACGG+GGG | - | chr3_3:76779385-76779404 | Msa0474010:CDS | 45.0% | |
| CTTTCGTCAATGCGGTTTCA+GGG | + | chr3_3:76779635-76779654 | None:intergenic | 45.0% | |
| GCGGCAAAATAAATCCAGGA+AGG | - | chr3_3:76779720-76779739 | Msa0474010:intron | 45.0% | |
| AGAATCGAACTTCGTGATCG+AGG | + | chr3_3:76779782-76779801 | None:intergenic | 45.0% | |
| GGGCCAAAGTCATGAAAGTT+TGG | - | chr3_3:76779881-76779900 | Msa0474010:intron | 45.0% | |
| GGCCCAAACTTTCATGACTT+TGG | + | chr3_3:76779887-76779906 | None:intergenic | 45.0% | |
| ACTTTGATGCCTGTGCGAAA+TGG | - | chr3_3:76780316-76780335 | Msa0474010:CDS | 45.0% | |
| CTTTGATGCCTGTGCGAAAT+GGG | - | chr3_3:76780317-76780336 | Msa0474010:CDS | 45.0% | |
| TTTGATGCCTGTGCGAAATG+GGG | - | chr3_3:76780318-76780337 | Msa0474010:CDS | 45.0% | |
| GGCAAGTTCAAGTGTTTCCA+TGG | - | chr3_3:76780339-76780358 | Msa0474010:CDS | 45.0% | |
| AAGAATGCGTGCATGTGTAC+TGG | - | chr3_3:76780446-76780465 | Msa0474010:CDS | 45.0% | |
| CTTTGCCTGCAAACAGTTGA+AGG | + | chr3_3:76780755-76780774 | None:intergenic | 45.0% | |
| TTATACGCCTGAAGCTGTTC+GGG | + | chr3_3:76780865-76780884 | None:intergenic | 45.0% | |
| ! | TATGTTCCAGTTGGTGTTCG+TGG | - | chr3_3:76780910-76780929 | Msa0474010:intron | 45.0% |
| AATACTCCACGAACACCAAC+TGG | + | chr3_3:76780919-76780938 | None:intergenic | 45.0% | |
| ! | GTTGGTGTTCGTGGAGTATT+TGG | - | chr3_3:76780919-76780938 | Msa0474010:intron | 45.0% |
| TTGTTGTGACAACTTCCCCA+AGG | - | chr3_3:76780996-76781015 | Msa0474010:intron | 45.0% | |
| TCAATGCTTGCAAGACTGAG+TGG | - | chr3_3:76781039-76781058 | Msa0474010:intron | 45.0% | |
| GTTGGCGGTAATTTCTACCA+CGG | + | chr3_3:76781110-76781129 | None:intergenic | 45.0% | |
| !! | GCTCAAATCTGGCCTTGAAT+AGG | + | chr3_3:76781692-76781711 | None:intergenic | 45.0% |
| AGAAAGTGGAAGCCACTCTT+TGG | + | chr3_3:76781812-76781831 | None:intergenic | 45.0% | |
| GGAAGTCCTTATGTTAACCG+TGG | - | chr3_3:76781855-76781874 | Msa0474010:intron | 45.0% | |
| CTGAACAGGAAGAGCTAGAT+CGG | - | chr3_3:76781931-76781950 | Msa0474010:intron | 45.0% | |
| TCGGTTCATCGCTGATATAG+AGG | - | chr3_3:76781950-76781969 | Msa0474010:intron | 45.0% | |
| AGCTGAAGAGGCCAAAGAAA+AGG | - | chr3_3:76781995-76782014 | Msa0474010:intron | 45.0% | |
| ! | TGGAACAGAGAAGAGTATGG+TGG | - | chr3_3:76782041-76782060 | Msa0474010:intron | 45.0% |
| ! | GACTATGATGGTGAGGTTAG+AGG | - | chr3_3:76782098-76782117 | Msa0474010:intron | 45.0% |
| AGGTTAGAGGCTCAAGAGTT+CGG | - | chr3_3:76782111-76782130 | Msa0474010:intron | 45.0% | |
| GCTGTCAACATCACTGTCAT+CGG | + | chr3_3:76782240-76782259 | None:intergenic | 45.0% | |
| TGAAGCTAGAGGTAGGTTCA+AGG | - | chr3_3:76782277-76782296 | Msa0474010:intron | 45.0% | |
| GAGGTAGGTTCAAGGAAAGT+AGG | - | chr3_3:76782285-76782304 | Msa0474010:intron | 45.0% | |
| GGTAGGTTCAAGGAAAGTAG+GGG | - | chr3_3:76782287-76782306 | Msa0474010:intron | 45.0% | |
| GTAGGTTCAAGGAAAGTAGG+GGG | - | chr3_3:76782288-76782307 | Msa0474010:intron | 45.0% | |
| GGCAATGGTCAAGTTAATGG+TGG | - | chr3_3:76782341-76782360 | Msa0474010:intron | 45.0% | |
| GGATTTGGAGGACAATGACT+CGG | - | chr3_3:76782466-76782485 | Msa0474010:intron | 45.0% | |
| ACCAAAGAGTTTGAGAGGCA+GGG | - | chr3_3:76782589-76782608 | Msa0474010:CDS | 45.0% | |
| CAAGCTTCATCAGCTTCCTT+TGG | + | chr3_3:76782782-76782801 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGATGAAGCT+TGG | - | chr3_3:76782780-76782799 | Msa0474010:CDS | 45.0% | |
| ! | GGTTTCTGAAAAACGAGAGG+TGG | + | chr3_3:76782899-76782918 | None:intergenic | 45.0% |
| ACCGAAGTTATTTAGGTGGG+TGG | - | chr3_3:76783013-76783032 | Msa0474010:intron | 45.0% | |
| CCCACCCACCTAAATAACTT+CGG | + | chr3_3:76783017-76783036 | None:intergenic | 45.0% | |
| CCGAAGTTATTTAGGTGGGT+GGG | - | chr3_3:76783014-76783033 | Msa0474010:intron | 45.0% | |
| CGTAGGACAATAGAACCTTG+AGG | + | chr3_3:76783156-76783175 | None:intergenic | 45.0% | |
| AATGGAACCTTGAGGAGTTG+AGG | + | chr3_3:76783237-76783256 | None:intergenic | 45.0% | |
| AGTAGGACAATGGAACCTTG+AGG | + | chr3_3:76783245-76783264 | None:intergenic | 45.0% | |
| GCGTCGGAAGTAGAAGAGAA+GGG | + | chr3_3:76778041-76778060 | None:intergenic | 50.0% | |
| TGCGTCGGAAGTAGAAGAGA+AGG | + | chr3_3:76778042-76778061 | None:intergenic | 50.0% | |
| TTGATTACGGAGGAGAGTGG+CGG | + | chr3_3:76778072-76778091 | None:intergenic | 50.0% | |
| ! | GAGTTGATTACGGAGGAGAG+TGG | + | chr3_3:76778075-76778094 | None:intergenic | 50.0% |
| CTGAAAAGGGAGGACAATGG+CGG | + | chr3_3:76778127-76778146 | None:intergenic | 50.0% | |
| GTTCTTACAAACCCCCGTGA+TGG | + | chr3_3:76779399-76779418 | None:intergenic | 50.0% | |
| GCTTTCGTCAATGCGGTTTC+AGG | + | chr3_3:76779636-76779655 | None:intergenic | 50.0% | |
| !! | GTTACTGACTCGACTGGCTT+TGG | + | chr3_3:76779663-76779682 | None:intergenic | 50.0% |
| TGGGATGAGATGTGTGTGGT+GGG | - | chr3_3:76779827-76779846 | Msa0474010:intron | 50.0% | |
| GTTTGGGCCCCAAATATCTG+AGG | - | chr3_3:76779898-76779917 | Msa0474010:intron | 50.0% | |
| CACAGGGCCTCAGATATTTG+GGG | + | chr3_3:76779908-76779927 | None:intergenic | 50.0% | |
| GCACAGGGCCTCAGATATTT+GGG | + | chr3_3:76779909-76779928 | None:intergenic | 50.0% | |
| AGCACAGGGCCTCAGATATT+TGG | + | chr3_3:76779910-76779929 | None:intergenic | 50.0% | |
| CTTAGAGTGACTGATCGACG+AGG | + | chr3_3:76780182-76780201 | None:intergenic | 50.0% | |
| CCTGCAAACAGTTGAAGGGT+AGG | + | chr3_3:76780750-76780769 | None:intergenic | 50.0% | |
| CCTACCCTTCAACTGTTTGC+AGG | - | chr3_3:76780747-76780766 | Msa0474010:intron | 50.0% | |
| TGTTCGGGTGTAAAGAGCTC+TGG | + | chr3_3:76780850-76780869 | None:intergenic | 50.0% | |
| CTTTACACCCGAACAGCTTC+AGG | - | chr3_3:76780855-76780874 | Msa0474010:intron | 50.0% | |
| ! | GGTGTTCGTGGAGTATTTGG+AGG | - | chr3_3:76780922-76780941 | Msa0474010:intron | 50.0% |
| ATGCTTGCAAGACTGAGTGG+TGG | - | chr3_3:76781042-76781061 | Msa0474010:intron | 50.0% | |
| TGCTTGCAAGACTGAGTGGT+GGG | - | chr3_3:76781043-76781062 | Msa0474010:intron | 50.0% | |
| AAATAGAACAGGACCTGCGG+CGG | - | chr3_3:76781745-76781764 | Msa0474010:intron | 50.0% | |
| TCCTGAGGATCCAACTGCAA+TGG | - | chr3_3:76781779-76781798 | Msa0474010:intron | 50.0% | |
| AATGGCCAGCATCCAAAGAG+TGG | - | chr3_3:76781797-76781816 | Msa0474010:intron | 50.0% | |
| TTACTGACGGCTTGTCTCCA+CGG | + | chr3_3:76781875-76781894 | None:intergenic | 50.0% | |
| GGAATCAGATCCTGCTGAAC+AGG | - | chr3_3:76781917-76781936 | Msa0474010:intron | 50.0% | |
| !! | TCTAGCTCTTCCTGTTCAGC+AGG | + | chr3_3:76781930-76781949 | None:intergenic | 50.0% |
| !! | GATGGCTCTGATGAAGCTAG+AGG | - | chr3_3:76782266-76782285 | Msa0474010:intron | 50.0% |
| GCTCTGATGAAGCTAGAGGT+AGG | - | chr3_3:76782270-76782289 | Msa0474010:intron | 50.0% | |
| TCAAGGAAAGTAGGGGGAGA+AGG | - | chr3_3:76782294-76782313 | Msa0474010:intron | 50.0% | |
| CAAGGAAAGTAGGGGGAGAA+GGG | - | chr3_3:76782295-76782314 | Msa0474010:intron | 50.0% | |
| AATGGTGGTCAGAGCAGACA+CGG | - | chr3_3:76782356-76782375 | Msa0474010:intron | 50.0% | |
| TGCAATGTGGGAGTCGGATT+TGG | - | chr3_3:76782451-76782470 | Msa0474010:intron | 50.0% | |
| AATGTGGGAGTCGGATTTGG+AGG | - | chr3_3:76782454-76782473 | Msa0474010:intron | 50.0% | |
| CACCAAAGAGTTTGAGAGGC+AGG | - | chr3_3:76782588-76782607 | Msa0474010:CDS | 50.0% | |
| TCCCTGCCTCTCAAACTCTT+TGG | + | chr3_3:76782593-76782612 | None:intergenic | 50.0% | |
| CCATGGACACGGATTTAGTG+CGG | + | chr3_3:76782628-76782647 | None:intergenic | 50.0% | |
| !! | GCTAAAGGCATCCATGGACA+CGG | + | chr3_3:76782639-76782658 | None:intergenic | 50.0% |
| GTGTCCATGGATGCCTTTAG+CGG | - | chr3_3:76782638-76782657 | Msa0474010:CDS | 50.0% | |
| !! | CAAACCGCTAAAGGCATCCA+TGG | + | chr3_3:76782645-76782664 | None:intergenic | 50.0% |
| CATGGATGCCTTTAGCGGTT+TGG | - | chr3_3:76782643-76782662 | Msa0474010:CDS | 50.0% | |
| CCAGTCTTCCAAACCGCTAA+AGG | + | chr3_3:76782654-76782673 | None:intergenic | 50.0% | |
| ! | CCTTTAGCGGTTTGGAAGAC+TGG | - | chr3_3:76782651-76782670 | Msa0474010:CDS | 50.0% |
| GACTGGATGTCCCAATCAGA+AGG | - | chr3_3:76782668-76782687 | Msa0474010:CDS | 50.0% | |
| GATGTCCCAATCAGAAGGTG+AGG | - | chr3_3:76782673-76782692 | Msa0474010:CDS | 50.0% | |
| GTCCTCCTCACCTTCTGATT+GGG | + | chr3_3:76782681-76782700 | None:intergenic | 50.0% | |
| AGTCCTCCTCACCTTCTGAT+TGG | + | chr3_3:76782682-76782701 | None:intergenic | 50.0% | |
| GGACTCAAGAGGTGGTGATA+AGG | - | chr3_3:76782697-76782716 | Msa0474010:CDS | 50.0% | |
| TGAAGCTTGGGACAGTGACT+AGG | - | chr3_3:76782793-76782812 | Msa0474010:CDS | 50.0% | |
| TCAGAAACCACACACGACTC+TGG | - | chr3_3:76782910-76782929 | Msa0474010:intron | 50.0% | |
| TACACTTCCAGAGTCGTGTG+TGG | + | chr3_3:76782920-76782939 | None:intergenic | 50.0% | |
| GTTACCTCCTCAACTCCTCA+AGG | - | chr3_3:76783138-76783157 | Msa0474010:CDS | 50.0% | |
| AGAACCTTGAGGAGTTGAGG+AGG | + | chr3_3:76783145-76783164 | None:intergenic | 50.0% | |
| GTTACCTCCTCAACTCCTCA+AGG | - | chr3_3:76783138-76783157 | Msa0474010:CDS | 50.0% | |
| CAGTGAGGATAAGGATGGCG+CGG | + | chr3_3:76778104-76778123 | None:intergenic | 55.0% | |
| CAATGGCGGCAGTGAGGATA+AGG | + | chr3_3:76778113-76778132 | None:intergenic | 55.0% | |
| CGTTGACATTCCCCGACACA+AGG | + | chr3_3:76778620-76778639 | None:intergenic | 55.0% | |
| CGGGGAATGTCAACGATGAG+AGG | - | chr3_3:76778625-76778644 | Msa0474010:CDS | 55.0% | |
| !! | GCATGGGTTACTGACTCGAC+TGG | + | chr3_3:76779669-76779688 | None:intergenic | 55.0% |
| TCGGTGGGATGAGATGTGTG+TGG | - | chr3_3:76779823-76779842 | Msa0474010:intron | 55.0% | |
| GTGGGATGAGATGTGTGTGG+TGG | - | chr3_3:76779826-76779845 | Msa0474010:intron | 55.0% | |
| GGGATGAGATGTGTGTGGTG+GGG | - | chr3_3:76779828-76779847 | Msa0474010:intron | 55.0% | |
| GGATGAGATGTGTGTGGTGG+GGG | - | chr3_3:76779829-76779848 | Msa0474010:intron | 55.0% | |
| ! | AGATGTGTGTGGTGGGGGAA+GGG | - | chr3_3:76779834-76779853 | Msa0474010:intron | 55.0% |
| GTAGGCTGAGCTACAGCACA+GGG | + | chr3_3:76779924-76779943 | None:intergenic | 55.0% | |
| TGTAGGCTGAGCTACAGCAC+AGG | + | chr3_3:76779925-76779944 | None:intergenic | 55.0% | |
| TGCTGTAGCTCAGCCTACAC+AGG | - | chr3_3:76779926-76779945 | Msa0474010:intron | 55.0% | |
| GAACTTGCCCCATTTCGCAC+AGG | + | chr3_3:76780328-76780347 | None:intergenic | 55.0% | |
| !! | AAGAGCTCTGGATCATGCCG+TGG | + | chr3_3:76780838-76780857 | None:intergenic | 55.0% |
| GCGGATGGGAGTAAATCCTG+AGG | - | chr3_3:76781764-76781783 | Msa0474010:intron | 55.0% | |
| GCCATTGCAGTTGGATCCTC+AGG | + | chr3_3:76781783-76781802 | None:intergenic | 55.0% | |
| TGGATGCTGGCCATTGCAGT+TGG | + | chr3_3:76781792-76781811 | None:intergenic | 55.0% | |
| GGAAGCCACTCTTTGGATGC+TGG | + | chr3_3:76781805-76781824 | None:intergenic | 55.0% | |
| CTATCGGCAGTCCGATGCTT+GGG | + | chr3_3:76782149-76782168 | None:intergenic | 55.0% | |
| TCTAACGACGACGACGACGA+TGG | - | chr3_3:76782191-76782210 | Msa0474010:intron | 55.0% | |
| GACGATGGTGAGTGGCATCA+TGG | - | chr3_3:76782206-76782225 | Msa0474010:intron | 55.0% | |
| AAAGTAGGGGGAGAAGGGAG+AGG | - | chr3_3:76782300-76782319 | Msa0474010:intron | 55.0% | |
| AGCAGCAGCAGCGATGATGA+GGG | - | chr3_3:76782524-76782543 | Msa0474010:intron | 55.0% | |
| AGTTTGAGAGGCAGGGAAGC+AGG | - | chr3_3:76782596-76782615 | Msa0474010:CDS | 55.0% | |
| CCGCACTAAATCCGTGTCCA+TGG | - | chr3_3:76782625-76782644 | Msa0474010:CDS | 55.0% | |
| GTCCCAATCAGAAGGTGAGG+AGG | - | chr3_3:76782676-76782695 | Msa0474010:CDS | 55.0% | |
| GAAGGTGAGGAGGACTCAAG+AGG | - | chr3_3:76782686-76782705 | Msa0474010:CDS | 55.0% | |
| GGAACCTTGAGGAGTTGAGG+AGG | + | chr3_3:76783234-76783253 | None:intergenic | 55.0% | |
| ! | AGTGGCGGAGCAAAGTGCGT+CGG | + | chr3_3:76778057-76778076 | None:intergenic | 60.0% |
| ! | GCGGAGGGAGTTGATTACGG+AGG | + | chr3_3:76778082-76778101 | None:intergenic | 60.0% |
| ! | GCGGCGGAGGGAGTTGATTA+CGG | + | chr3_3:76778085-76778104 | None:intergenic | 60.0% |
| TGAGGATAAGGATGGCGCGG+CGG | + | chr3_3:76778101-76778120 | None:intergenic | 60.0% | |
| GGCGGCAGTGAGGATAAGGA+TGG | + | chr3_3:76778109-76778128 | None:intergenic | 60.0% | |
| ! | GAGATGTGTGTGGTGGGGGA+AGG | - | chr3_3:76779833-76779852 | Msa0474010:intron | 60.0% |
| AGCTCAGCCTACACAGGCAC+AGG | - | chr3_3:76779932-76779951 | Msa0474010:intron | 60.0% | |
| GCTCAGCCTACACAGGCACA+GGG | - | chr3_3:76779933-76779952 | Msa0474010:intron | 60.0% | |
| ! | ATTGAGAAGCACGGTGGGGC+CGG | + | chr3_3:76779959-76779978 | None:intergenic | 60.0% |
| TCTGGATCATGCCGTGGTGG+AGG | + | chr3_3:76780832-76780851 | None:intergenic | 60.0% | |
| !! | AGCTCTGGATCATGCCGTGG+TGG | + | chr3_3:76780835-76780854 | None:intergenic | 60.0% |
| GATTTACTCCCATCCGCCGC+AGG | + | chr3_3:76781761-76781780 | None:intergenic | 60.0% | |
| GCTATCGGCAGTCCGATGCT+TGG | + | chr3_3:76782150-76782169 | None:intergenic | 60.0% | |
| ACGACGACGACGATGGTGAG+TGG | - | chr3_3:76782198-76782217 | Msa0474010:intron | 60.0% | |
| GAGCAGCAGCAGCGATGATG+AGG | - | chr3_3:76782523-76782542 | Msa0474010:intron | 60.0% | |
| GGTGAGGAGGACTCAAGAGG+TGG | - | chr3_3:76782689-76782708 | Msa0474010:CDS | 60.0% | |
| GATAAGGATGGCGCGGCGGA+GGG | + | chr3_3:76778097-76778116 | None:intergenic | 65.0% | |
| GGAGGACAATGGCGGCAGTG+AGG | + | chr3_3:76778119-76778138 | None:intergenic | 65.0% | |
| AGCCTACACAGGCACAGGGC+CGG | - | chr3_3:76779937-76779956 | Msa0474010:intron | 65.0% | |
| TACCGGAGCTGCCTCCACCA+CGG | - | chr3_3:76780818-76780837 | Msa0474010:intron | 65.0% | |
| AGAACAGGACCTGCGGCGGA+TGG | - | chr3_3:76781749-76781768 | Msa0474010:intron | 65.0% | |
| GAACAGGACCTGCGGCGGAT+GGG | - | chr3_3:76781750-76781769 | Msa0474010:intron | 65.0% | |
| GGATAAGGATGGCGCGGCGG+AGG | + | chr3_3:76778098-76778117 | None:intergenic | 70.0% | |
| ! | TGCCGTGGTGGAGGCAGCTC+CGG | + | chr3_3:76780823-76780842 | None:intergenic | 70.0% |
| GGCCGGCCCTGTGCCTGTGT+AGG | + | chr3_3:76779942-76779961 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 76778018 | 76783328 | 76778018 | ID=Msa0474010;Name=Msa0474010 |
| chr3_3 | mRNA | 76778018 | 76783328 | 76778018 | ID=Msa0474010-mRNA-1;Parent=Msa0474010;Name=Msa0474010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=171|1|1|1|0.75|0.6|5|425|631 |
| chr3_3 | exon | 76778018 | 76778097 | 76778018 | ID=Msa0474010-mRNA-1:exon:20240;Parent=Msa0474010-mRNA-1 |
| chr3_3 | exon | 76778187 | 76779659 | 76778187 | ID=Msa0474010-mRNA-1:exon:20239;Parent=Msa0474010-mRNA-1 |
| chr3_3 | exon | 76780176 | 76780577 | 76780176 | ID=Msa0474010-mRNA-1:exon:20238;Parent=Msa0474010-mRNA-1 |
| chr3_3 | exon | 76782563 | 76782845 | 76782563 | ID=Msa0474010-mRNA-1:exon:20237;Parent=Msa0474010-mRNA-1 |
| chr3_3 | exon | 76783075 | 76783328 | 76783075 | ID=Msa0474010-mRNA-1:exon:20236;Parent=Msa0474010-mRNA-1 |
| chr3_3 | five_prime_UTR | 76783158 | 76783328 | 76783158 | ID=Msa0474010-mRNA-1:five_prime_utr;Parent=Msa0474010-mRNA-1 |
| chr3_3 | CDS | 76783075 | 76783157 | 76783075 | ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1 |
| chr3_3 | CDS | 76782563 | 76782845 | 76782563 | ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1 |
| chr3_3 | CDS | 76780176 | 76780577 | 76780176 | ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1 |
| chr3_3 | CDS | 76778532 | 76779659 | 76778532 | ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1 |
| chr3_3 | three_prime_UTR | 76778187 | 76778531 | 76778187 | ID=Msa0474010-mRNA-1:three_prime_utr;Parent=Msa0474010-mRNA-1 |
| chr3_3 | three_prime_UTR | 76778018 | 76778097 | 76778018 | ID=Msa0474010-mRNA-1:three_prime_utr;Parent=Msa0474010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
