AlfalfaGEDB | Msa0474010

M. sativa cultivar zhongmu-4 / Msa0474010

KEGG: -
GO: GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474010	XP_013450735.1	92.902	634	39	2	1	631	1	631	0.0	1122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474010	sp\|Q9LT57\|CFM9_ARATH	80.303	330	60	2	61	385	1	330	5.73e-162	476

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474010	A0A072U6I9	92.902	634	39	2	1	631	1	631	0.0	1122

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0067620	Msa0474010	0.805717	1.166596e-49	-8.615850e-47
Msa0150820	Msa0474010	0.800658	1.299834e-48	-8.615850e-47
Msa0159180	Msa0474010	0.800631	1.316123e-48	-8.615850e-47
Msa0205230	Msa0474010	0.801830	7.480869e-49	-8.615850e-47
Msa0253200	Msa0474010	0.801978	6.977138e-49	-8.615850e-47
Msa0292030	Msa0474010	0.802701	4.950502e-49	-8.615850e-47
Msa0388700	Msa0474010	0.806562	7.743469e-50	-8.615850e-47
Msa0473990	Msa0474010	0.887038	2.026520e-72	-8.615850e-47
Msa0474010	Msa0481530	0.806121	9.594582e-50	-8.615850e-47
Msa0474010	Msa0556060	0.813697	2.244386e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474010	MtrunA17_Chr6g0449261	92.902	634	39	2	1	631	1	631	0.0	1122
Msa0474010	MtrunA17_Chr4g0067911	49.704	169	85	0	113	281	161	329	2.22e-45	164
Msa0474010	MtrunA17_Chr1g0171521	51.634	153	72	1	110	260	116	268	2.09e-42	154
Msa0474010	MtrunA17_Chr4g0033621	44.970	169	93	0	113	281	134	302	5.31e-40	151
Msa0474010	MtrunA17_Chr8g0391361	48.611	144	74	0	113	256	7	150	4.66e-37	135
Msa0474010	MtrunA17_Chr6g0484411	32.701	211	128	5	77	284	557	756	4.46e-23	104
Msa0474010	MtrunA17_Chr1g0187011	31.925	213	127	6	77	284	566	765	5.38e-23	104
Msa0474010	MtrunA17_Chr6g0451621	35.593	177	106	3	114	284	518	692	1.40e-21	100
Msa0474010	MtrunA17_Chr2g0330811	37.500	128	72	2	148	272	593	715	9.08e-18	87.4
Msa0474010	MtrunA17_Chr4g0071101	28.293	205	140	3	89	290	531	731	3.38e-17	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474010	AT3G27550.2	71.756	393	96	6	1	385	1	386	4.19e-164	481
Msa0474010	AT3G27550.3	80.303	330	60	2	61	385	1	330	5.82e-163	476
Msa0474010	AT3G27550.1	80.303	330	60	2	61	385	1	330	5.82e-163	476
Msa0474010	AT3G25440.2	45.918	196	104	1	96	289	57	252	2.85e-47	171
Msa0474010	AT3G25440.1	45.918	196	104	1	96	289	121	316	1.42e-46	171
Msa0474010	AT2G28480.1	46.857	175	93	0	107	281	119	293	7.29e-44	161
Msa0474010	AT3G25440.4	47.826	161	82	1	131	289	1	161	4.91e-42	154
Msa0474010	AT3G25440.3	47.826	161	82	1	131	289	1	161	4.91e-42	154
Msa0474010	AT3G25440.5	47.826	161	82	1	131	289	1	161	4.91e-42	154
Msa0474010	AT4G13070.1	45.128	195	97	3	78	268	111	299	1.71e-40	151

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Find 205 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATCATCATGTTCCG+TGG	0.652160	3_3:-76780234	Msa0474010:CDS
AAAACTATTACGATATTGAG+CGG	0.607700	3_3:+76778763	None:intergenic
AAACATAAAGAAAATAGAAC+AGG	0.489664	3_3:-76779590	Msa0474010:CDS
AAACTGAAAAGGGAGGACAA+TGG	0.724243	3_3:+76783197	None:intergenic
AAAGAGTATGCGAAGCAAGG+TGG	0.683453	3_3:-76782676	Msa0474010:CDS
AAAGGAAGCTGATGAAGCTT+GGG	0.481393	3_3:-76778543	Msa0474010:CDS
AAATAGAACAGGACCTGCGG+CGG	0.657187	3_3:-76779579	Msa0474010:CDS
AAATGATGACTATGATGGTG+AGG	0.683700	3_3:-76779233	Msa0474010:CDS
AACAAGAATTATGTTCCAGT+TGG	0.532863	3_3:-76780423	Msa0474010:CDS
AACAATAAAAGCTATCGTTA+TGG	0.440253	3_3:+76782760	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCATTCTTCAAACTGAAAA+GGG	+	chr3_3:76778140-76778159	None:intergenic	30.0%
ACTCATTCTTCAAACTGAAA+AGG	+	chr3_3:76778141-76778160	None:intergenic	30.0%
AGTTGAAAGAGAGATGAAAT+GGG	+	chr3_3:76778234-76778253	None:intergenic	30.0%
AAGTTGAAAGAGAGATGAAA+TGG	+	chr3_3:76778235-76778254	None:intergenic	30.0%
GATCCATTCAAAAGATTCAA+CGG	+	chr3_3:76778598-76778617	None:intergenic	30.0%
AAGAGTCTGGTAAAACATTA+AGG	-	chr3_3:76778686-76778705	Msa0474010:CDS	30.0%
AGAGTCTGGTAAAACATTAA+GGG	-	chr3_3:76778687-76778706	Msa0474010:CDS	30.0%
CAACATCTCAAAGCAATATA+TGG	+	chr3_3:76778857-76778876	None:intergenic	30.0%
AAAGCCTTCTTAAACACTTT+AGG	-	chr3_3:76778959-76778978	Msa0474010:CDS	30.0%
CCAATTGTTAAGATTAGAAC+AGG	+	chr3_3:76778987-76779006	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	76778018	76783328	76778018	ID=Msa0474010;Name=Msa0474010
chr3_3	mRNA	76778018	76783328	76778018	ID=Msa0474010-mRNA-1;Parent=Msa0474010;Name=Msa0474010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=171\|1\|1\|1\|0.75\|0.6\|5\|425\|631
chr3_3	exon	76778018	76778097	76778018	ID=Msa0474010-mRNA-1:exon:20240;Parent=Msa0474010-mRNA-1
chr3_3	exon	76778187	76779659	76778187	ID=Msa0474010-mRNA-1:exon:20239;Parent=Msa0474010-mRNA-1
chr3_3	exon	76780176	76780577	76780176	ID=Msa0474010-mRNA-1:exon:20238;Parent=Msa0474010-mRNA-1
chr3_3	exon	76782563	76782845	76782563	ID=Msa0474010-mRNA-1:exon:20237;Parent=Msa0474010-mRNA-1
chr3_3	exon	76783075	76783328	76783075	ID=Msa0474010-mRNA-1:exon:20236;Parent=Msa0474010-mRNA-1
chr3_3	five_prime_UTR	76783158	76783328	76783158	ID=Msa0474010-mRNA-1:five_prime_utr;Parent=Msa0474010-mRNA-1
chr3_3	CDS	76783075	76783157	76783075	ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1
chr3_3	CDS	76782563	76782845	76782563	ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1
chr3_3	CDS	76780176	76780577	76780176	ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1
chr3_3	CDS	76778532	76779659	76778532	ID=Msa0474010-mRNA-1:cds;Parent=Msa0474010-mRNA-1
chr3_3	three_prime_UTR	76778187	76778531	76778187	ID=Msa0474010-mRNA-1:three_prime_utr;Parent=Msa0474010-mRNA-1
chr3_3	three_prime_UTR	76778018	76778097	76778018	ID=Msa0474010-mRNA-1:three_prime_utr;Parent=Msa0474010-mRNA-1

Gene Sequence

>Msa0474010

ATGTTCAGTGTTCGAAATCTTCATAAACATTACTCCCTCAAACCCATTTCATCTCTCTTTCAACTTCAATCCAATCTCTTCAGAAATGTTGTGCCTTTAGGACAAGGAATAGAGCAAAGTAAAACTGATGATAAAGTTGAAGAGTACCATAACGATAGCTTTTATTGTTATGTTAAACCGTTGAATCTTTTGAATGGATCCTTGTGTCGGGGAATGTCAACGATGAGAGGAAAGAGTATGCGAAGCAAGGTGGAAAGAAGAATGCAGAAAGAGTCTGGTAAAACATTAAGGGAAATTCGAAAAGCTAAAAAAATTACGAAGAAACTTATGACTGACGAGGAGCGGCTTGTTTACAATCTCAAAAGAGCAAAGAAGAAAATTGCATTGCTACTACAAAAGCTTAAGAAATATGAGCTACCGGAGCTGCCTCCACCACGGCATGATCCAGAGCTCTTTACACCCGAACAGCTTCAGGCGTATAAAAAAATTGGATTCAAGAACAAGAATTATGTTCCAGTTGGTGTTCGTGGAGTATTTGGAGGAGTTGTGCAAAATATGCATCTCCATTGGAAGTTTCATGAGACTGTGCAAGTTTGTTGTGACAACTTCCCCAAGGAAAGAATTAAAGAAATGGCTTCAATGCTTGCAAGACTGAGTGGTGGGATCGTGTTAAACGTTCATAATGTGAAAACAATCATCATGTTCCGTGGTAGAAATTACCGCCAACCCAAAAATTTGATACCTATTAATACCCTTACAAAGAGGAAGGCCCTATTCAAGGCCAGATTTGAGCAAGCTCTTGAATCTCAAAAGTTAAACATAAAGAAAATAGAACAGGACCTGCGGCGGATGGGAGTAAATCCTGAGGATCCAACTGCAATGGCCAGCATCCAAAGAGTGGCTTCCACTTTCTTCAATGCAATTGACAAGAAAGATGGAAGTCCTTATGTTAACCGTGGAGACAAGCCGTCAGTAATAGAACCTAATGATGGTTTGGAGGAATCAGATCCTGCTGAACAGGAAGAGCTAGATCGGTTCATCGCTGATATAGAGGATGCCGCCGATAAAGAATATGAAGCTGAAGAGGCCAAAGAAAAGGAAGAGTTTGGAAGACTTAGATATTGGAACAGAGAAGAGTATGGTGGAAGATTCAGAAGATTGAACGATTCTAGAAATGATGACTATGATGGTGAGGTTAGAGGCTCAAGAGTTCGGCAGAATATACATCCCAAGCATCGGACTGCCGATAGCGACGATGAAGAGAATGCTTATTCTAACGACGACGACGACGATGGTGAGTGGCATCATGGTAATATTGCCGATGACAGTGATGTTGACAGCAATTTTGATGGCTCTGATGAAGCTAGAGGTAGGTTCAAGGAAAGTAGGGGGAGAAGGGAGAGGATAAATAATACAAGTATTGGCAATGGTCAAGTTAATGGTGGTCAGAGCAGACACGGTGAAGCTAAATTTAGGACGAATATGGGTGTACAAGATTTTGAATCAGAAGATATACTTAGCGAAGTTGAAAATGCAATGTGGGAGTCGGATTTGGAGGACAATGACTCGGTACATTTGAGAGGAGTCAATAGCAGTAACTATAAGAGCAGCAGCAGCGATGATGAGGGTCAGATTGATGATTCCGCTCAATATCGTAATAGTTTTAATGCACCAAAGAGTTTGAGAGGCAGGGAAGCAGGAATTATCCGCACTAAATCCGTGTCCATGGATGCCTTTAGCGGTTTGGAAGACTGGATGTCCCAATCAGAAGGTGAGGAGGACTCAAGAGGTGGTGATAAGGACTACCCTACAAGTCAAAATAGTAAGGTGGTCAAAAGTGATATCCATAAGAAGAGATCACCAAAGGAAGCTGATGAAGCTTGGGACAGTGACTAG

Protein sequence

>Msa0474010

MFSVRNLHKHYSLKPISSLFQLQSNLFRNVVPLGQGIEQSKTDDKVEEYHNDSFYCYVKPLNLLNGSLCRGMSTMRGKSMRSKVERRMQKESGKTLREIRKAKKITKKLMTDEERLVYNLKRAKKKIALLLQKLKKYELPELPPPRHDPELFTPEQLQAYKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKERIKEMASMLARLSGGIVLNVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQDLRRMGVNPEDPTAMASIQRVASTFFNAIDKKDGSPYVNRGDKPSVIEPNDGLEESDPAEQEELDRFIADIEDAADKEYEAEEAKEKEEFGRLRYWNREEYGGRFRRLNDSRNDDYDGEVRGSRVRQNIHPKHRTADSDDEENAYSNDDDDDGEWHHGNIADDSDVDSNFDGSDEARGRFKESRGRRERINNTSIGNGQVNGGQSRHGEAKFRTNMGVQDFESEDILSEVENAMWESDLEDNDSVHLRGVNSSNYKSSSSDDEGQIDDSAQYRNSFNAPKSLRGREAGIIRTKSVSMDAFSGLEDWMSQSEGEEDSRGGDKDYPTSQNSKVVKSDIHKKRSPKEADEAWDSD*