AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475950 MtrunA17_Chr3g0145051 83.036 224 21 7 1 222 1 209 1.16e-77 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475950 AT1G76180.1 46.948 213 76 6 1 209 1 180 3.77e-22 89.7
Msa0475950 AT1G76180.2 46.948 213 76 6 1 209 1 180 3.77e-22 89.7
Msa0475950 AT1G20450.1 39.015 264 95 11 1 209 1 253 9.49e-21 87.8
Msa0475950 AT1G20440.1 40.000 255 93 11 1 201 1 249 5.41e-20 85.9
Msa0475950 AT1G20450.2 39.163 263 95 11 1 209 1 252 6.49e-20 85.5

Find 55 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAGAAGAAAGGTATTT+TGG 0.202968 3_3:+79663046 Msa0475950:CDS
TGGTGTATCAAAAGAAATTA+TGG 0.246947 3_3:+79663383 Msa0475950:three_prime_UTR
TCATGTTCAGTAGCAGTCTT+AGG 0.274530 3_3:-79663101 None:intergenic
CACAGAAAAGAAAAGTTGTT+TGG 0.284218 3_3:+79663320 Msa0475950:three_prime_UTR
AGGTTTCCTGGACAAAATTA+AGG 0.300059 3_3:+79662911 Msa0475950:CDS
AAAATTAAGGAGAAGCTTCC+AGG 0.351108 3_3:+79662924 Msa0475950:CDS
TGAAGAGAAGAAAGGTTTCC+TGG 0.355767 3_3:+79662899 Msa0475950:CDS
TCTTCTACTTTGGTCTCTGA+TGG 0.368786 3_3:-79662487 None:intergenic
AAAGAAGAAGAAAGAAAAGA+AGG 0.380764 3_3:+79662809 Msa0475950:CDS
GAAAGAAAAGAAGGAGAAGA+AGG 0.381297 3_3:+79662818 Msa0475950:CDS
TCGAGTGAGGAGGAAGTTGA+TGG 0.382576 3_3:+79662774 Msa0475950:CDS
ACAGAAAAGAAAAGTTGTTT+GGG 0.387488 3_3:+79663321 Msa0475950:three_prime_UTR
GAGAAAGTTGATGTTGTTGA+TGG 0.398275 3_3:+79662861 Msa0475950:CDS
TTTAATTGATTTCAATATCA+AGG 0.403210 3_3:+79663213 Msa0475950:three_prime_UTR
TTTGATCTCTGTTTCAGAGT+TGG 0.421884 3_3:-79662350 None:intergenic
AATATTAATGCTTATGTAGC+TGG 0.437192 3_3:-79662237 None:intergenic
AACAAGATTAATCAAGCAAA+TGG 0.444116 3_3:-79662260 None:intergenic
GTCTCAGCAGATGGCACAGC+AGG 0.446448 3_3:-79662996 None:intergenic
AAGATCAAAGAGAAGATTCC+TGG 0.454599 3_3:+79663071 Msa0475950:CDS
ACAGCAGGAGCAACAACAAC+AGG 0.468581 3_3:-79662981 None:intergenic
ATGATGAAAATCAAAGGAGA+TGG 0.470512 3_3:-79662159 None:intergenic
AAAGAAACACACCAGCCTCT+TGG 0.485431 3_3:+79662525 Msa0475950:CDS
AGGAGGAAGTTGATGGAGAG+AGG 0.487866 3_3:+79662781 Msa0475950:CDS
CATGTTCAGTAGCAGTCTTA+GGG 0.495120 3_3:-79663100 None:intergenic
GTTGTTGTTGTCTCAGCAGA+TGG 0.500792 3_3:-79663005 None:intergenic
GCTTAGTAATCAATTCATCA+TGG 0.502627 3_3:+79662288 Msa0475950:exon
CTCTGTTTCAGAGTTGGTTG+CGG 0.507900 3_3:-79662344 None:intergenic
ACAACATCAACTTTCTCTAC+TGG 0.509084 3_3:-79662855 None:intergenic
TGATGAAAATCAAAGGAGAT+GGG 0.516533 3_3:-79662158 None:intergenic
TGAGATGATTATGATGATAG+TGG 0.519804 3_3:-79662195 None:intergenic
GTTGCAACAGCATCCTCTTG+AGG 0.534346 3_3:-79662430 None:intergenic
AGAAAAGAAGGAGAAGAAGG+AGG 0.540684 3_3:+79662821 Msa0475950:CDS
GTGAAGTTTCTCCAAGAGGC+TGG 0.546170 3_3:-79662536 None:intergenic
GCAAGCACTGAAGAGAAGAA+AGG 0.548209 3_3:+79662891 Msa0475950:CDS
CATGATCAAGGAGAGAAGAA+AGG 0.558513 3_3:+79663038 Msa0475950:CDS
TAATCAATTCATCATGGCTG+AGG 0.573271 3_3:+79662294 Msa0475950:exon
ACAACAGCTAGTCATGATCA+AGG 0.576125 3_3:+79663026 Msa0475950:CDS
CTGAAACAGAGATCAAAGAC+AGG 0.576169 3_3:+79662356 Msa0475950:CDS
GTTTCGATGATGAAAATCAA+AGG 0.582073 3_3:-79662165 None:intergenic
TGTTTCAGAGTTGGTTGCGG+TGG 0.586483 3_3:-79662341 None:intergenic
AGGAAGTTGATGGAGAGAGG+AGG 0.587456 3_3:+79662784 Msa0475950:CDS
GGAGCAACAACAACAGGTGG+TGG 0.591480 3_3:-79662975 None:intergenic
GCAGTCTTAGGGTGATAACC+AGG 0.611315 3_3:-79663089 None:intergenic
AGAACATATTAAGCCTCAAG+AGG 0.614539 3_3:+79662417 Msa0475950:CDS
ATCGGTGAAGTTTCTCCAAG+AGG 0.645229 3_3:-79662540 None:intergenic
TGAAACAGAGATCAAAGACA+GGG 0.654650 3_3:+79662357 Msa0475950:CDS
GATGAAAATCAAAGGAGATG+GGG 0.656892 3_3:-79662157 None:intergenic
GCAGGAGCAACAACAACAGG+TGG 0.666368 3_3:-79662978 None:intergenic
TATGCATGTATAGTCGAGTG+AGG 0.673354 3_3:+79662761 Msa0475950:intron
GCATGTATAGTCGAGTGAGG+AGG 0.675953 3_3:+79662764 Msa0475950:intron
AAAGCCACAAAACAACACAA+TGG 0.687803 3_3:-79663178 None:intergenic
AGCTTGAAGAGCTATCAGAT+CGG 0.690728 3_3:-79662558 None:intergenic
AGACAACAAAGATCATCACA+AGG 0.715357 3_3:+79663124 Msa0475950:CDS
GGAGAATCAGAACAAGTACG+AGG 0.738041 3_3:+79662315 Msa0475950:CDS
GAAACAGAGATCAAAGACAG+GGG 0.744878 3_3:+79662358 Msa0475950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTGATTTCAATATCA+AGG + chr3_3:79663213-79663232 Msa0475950:three_prime_UTR 15.0%
!! GATTGTCAAAAAAAAAATAT+TGG + chr3_3:79663363-79663382 Msa0475950:three_prime_UTR 15.0%
!!! TTTAATTGATTTCAATATCA+AGG + chr3_3:79663213-79663232 Msa0475950:three_prime_UTR 15.0%
!! GATTGTCAAAAAAAAAATAT+TGG + chr3_3:79663363-79663382 Msa0475950:three_prime_UTR 15.0%
! AATATTAATGCTTATGTAGC+TGG - chr3_3:79662240-79662259 None:intergenic 25.0%
! AACAAGATTAATCAAGCAAA+TGG - chr3_3:79662263-79662282 None:intergenic 25.0%
!! TTCTTCTTTTTCTTCTACTT+TGG - chr3_3:79662500-79662519 None:intergenic 25.0%
! AAAGTAGAAGAAAAAGAAGA+AGG + chr3_3:79662499-79662518 Msa0475950:CDS 25.0%
! AAAGAAGAAGAAAGAAAAGA+AGG + chr3_3:79662809-79662828 Msa0475950:CDS 25.0%
! ACAGAAAAGAAAAGTTGTTT+GGG + chr3_3:79663321-79663340 Msa0475950:three_prime_UTR 25.0%
! TGGTGTATCAAAAGAAATTA+TGG + chr3_3:79663383-79663402 Msa0475950:three_prime_UTR 25.0%
! AATATTAATGCTTATGTAGC+TGG - chr3_3:79662240-79662259 None:intergenic 25.0%
! AACAAGATTAATCAAGCAAA+TGG - chr3_3:79662263-79662282 None:intergenic 25.0%
!! TTCTTCTTTTTCTTCTACTT+TGG - chr3_3:79662500-79662519 None:intergenic 25.0%
! AAAGTAGAAGAAAAAGAAGA+AGG + chr3_3:79662499-79662518 Msa0475950:CDS 25.0%
! AAAGAAGAAGAAAGAAAAGA+AGG + chr3_3:79662809-79662828 Msa0475950:CDS 25.0%
! ACAGAAAAGAAAAGTTGTTT+GGG + chr3_3:79663321-79663340 Msa0475950:three_prime_UTR 25.0%
! TGGTGTATCAAAAGAAATTA+TGG + chr3_3:79663383-79663402 Msa0475950:three_prime_UTR 25.0%
TGATGAAAATCAAAGGAGAT+GGG - chr3_3:79662161-79662180 None:intergenic 30.0%
ATGATGAAAATCAAAGGAGA+TGG - chr3_3:79662162-79662181 None:intergenic 30.0%
GTTTCGATGATGAAAATCAA+AGG - chr3_3:79662168-79662187 None:intergenic 30.0%
TGAGATGATTATGATGATAG+TGG - chr3_3:79662198-79662217 None:intergenic 30.0%
GCTTAGTAATCAATTCATCA+TGG + chr3_3:79662288-79662307 Msa0475950:exon 30.0%
! TTTTCTAGGTGGTAAGAAAA+AGG + chr3_3:79662390-79662409 Msa0475950:CDS 30.0%
CACAGAAAAGAAAAGTTGTT+TGG + chr3_3:79663320-79663339 Msa0475950:three_prime_UTR 30.0%
TGATGAAAATCAAAGGAGAT+GGG - chr3_3:79662161-79662180 None:intergenic 30.0%
ATGATGAAAATCAAAGGAGA+TGG - chr3_3:79662162-79662181 None:intergenic 30.0%
GTTTCGATGATGAAAATCAA+AGG - chr3_3:79662168-79662187 None:intergenic 30.0%
TGAGATGATTATGATGATAG+TGG - chr3_3:79662198-79662217 None:intergenic 30.0%
GCTTAGTAATCAATTCATCA+TGG + chr3_3:79662288-79662307 Msa0475950:exon 30.0%
! TTTTCTAGGTGGTAAGAAAA+AGG + chr3_3:79662390-79662409 Msa0475950:CDS 30.0%
CACAGAAAAGAAAAGTTGTT+TGG + chr3_3:79663320-79663339 Msa0475950:three_prime_UTR 30.0%
GATGAAAATCAAAGGAGATG+GGG - chr3_3:79662160-79662179 None:intergenic 35.0%
TAATCAATTCATCATGGCTG+AGG + chr3_3:79662294-79662313 Msa0475950:exon 35.0%
TTTGATCTCTGTTTCAGAGT+TGG - chr3_3:79662353-79662372 None:intergenic 35.0%
TGAAACAGAGATCAAAGACA+GGG + chr3_3:79662357-79662376 Msa0475950:CDS 35.0%
!!! AGGGGTGTTTTTGATTTTCT+AGG + chr3_3:79662376-79662395 Msa0475950:CDS 35.0%
!!! GGTGTTTTTGATTTTCTAGG+TGG + chr3_3:79662379-79662398 Msa0475950:CDS 35.0%
AGAACATATTAAGCCTCAAG+AGG + chr3_3:79662417-79662436 Msa0475950:CDS 35.0%
!! TGCAACTGATTTTAGTCACA+AGG + chr3_3:79662447-79662466 Msa0475950:CDS 35.0%
TGTATTGAATACGTGTCAAG+TGG + chr3_3:79662637-79662656 Msa0475950:intron 35.0%
GAAAGAAAAGAAGGAGAAGA+AGG + chr3_3:79662818-79662837 Msa0475950:CDS 35.0%
ACAACATCAACTTTCTCTAC+TGG - chr3_3:79662858-79662877 None:intergenic 35.0%
!! GAGAAAGTTGATGTTGTTGA+TGG + chr3_3:79662861-79662880 Msa0475950:CDS 35.0%
AGGTTTCCTGGACAAAATTA+AGG + chr3_3:79662911-79662930 Msa0475950:CDS 35.0%
AAAATTAAGGAGAAGCTTCC+AGG + chr3_3:79662924-79662943 Msa0475950:CDS 35.0%
!!! AGGAGAGAAGAAAGGTATTT+TGG + chr3_3:79663046-79663065 Msa0475950:CDS 35.0%
AAGATCAAAGAGAAGATTCC+TGG + chr3_3:79663071-79663090 Msa0475950:CDS 35.0%
AGACAACAAAGATCATCACA+AGG + chr3_3:79663124-79663143 Msa0475950:CDS 35.0%
AAAGCCACAAAACAACACAA+TGG - chr3_3:79663181-79663200 None:intergenic 35.0%
!!! ATTGTGTTGTTTTGTGGCTT+TGG + chr3_3:79663180-79663199 Msa0475950:three_prime_UTR 35.0%
!!! TTGTGTTGTTTTGTGGCTTT+GGG + chr3_3:79663181-79663200 Msa0475950:three_prime_UTR 35.0%
GATGAAAATCAAAGGAGATG+GGG - chr3_3:79662160-79662179 None:intergenic 35.0%
TAATCAATTCATCATGGCTG+AGG + chr3_3:79662294-79662313 Msa0475950:exon 35.0%
TTTGATCTCTGTTTCAGAGT+TGG - chr3_3:79662353-79662372 None:intergenic 35.0%
TGAAACAGAGATCAAAGACA+GGG + chr3_3:79662357-79662376 Msa0475950:CDS 35.0%
!!! AGGGGTGTTTTTGATTTTCT+AGG + chr3_3:79662376-79662395 Msa0475950:CDS 35.0%
!!! GGTGTTTTTGATTTTCTAGG+TGG + chr3_3:79662379-79662398 Msa0475950:CDS 35.0%
AGAACATATTAAGCCTCAAG+AGG + chr3_3:79662417-79662436 Msa0475950:CDS 35.0%
!! TGCAACTGATTTTAGTCACA+AGG + chr3_3:79662447-79662466 Msa0475950:CDS 35.0%
TGTATTGAATACGTGTCAAG+TGG + chr3_3:79662637-79662656 Msa0475950:intron 35.0%
GAAAGAAAAGAAGGAGAAGA+AGG + chr3_3:79662818-79662837 Msa0475950:CDS 35.0%
ACAACATCAACTTTCTCTAC+TGG - chr3_3:79662858-79662877 None:intergenic 35.0%
!! GAGAAAGTTGATGTTGTTGA+TGG + chr3_3:79662861-79662880 Msa0475950:CDS 35.0%
AGGTTTCCTGGACAAAATTA+AGG + chr3_3:79662911-79662930 Msa0475950:CDS 35.0%
AAAATTAAGGAGAAGCTTCC+AGG + chr3_3:79662924-79662943 Msa0475950:CDS 35.0%
!!! AGGAGAGAAGAAAGGTATTT+TGG + chr3_3:79663046-79663065 Msa0475950:CDS 35.0%
AAGATCAAAGAGAAGATTCC+TGG + chr3_3:79663071-79663090 Msa0475950:CDS 35.0%
AGACAACAAAGATCATCACA+AGG + chr3_3:79663124-79663143 Msa0475950:CDS 35.0%
AAAGCCACAAAACAACACAA+TGG - chr3_3:79663181-79663200 None:intergenic 35.0%
!!! ATTGTGTTGTTTTGTGGCTT+TGG + chr3_3:79663180-79663199 Msa0475950:three_prime_UTR 35.0%
!!! TTGTGTTGTTTTGTGGCTTT+GGG + chr3_3:79663181-79663200 Msa0475950:three_prime_UTR 35.0%
CTGAAACAGAGATCAAAGAC+AGG + chr3_3:79662356-79662375 Msa0475950:CDS 40.0%
GAAACAGAGATCAAAGACAG+GGG + chr3_3:79662358-79662377 Msa0475950:CDS 40.0%
TCTTCTACTTTGGTCTCTGA+TGG - chr3_3:79662490-79662509 None:intergenic 40.0%
AGCTTGAAGAGCTATCAGAT+CGG - chr3_3:79662561-79662580 None:intergenic 40.0%
GATTGAACGTAGTGTCAACA+AGG - chr3_3:79662671-79662690 None:intergenic 40.0%
TATGCATGTATAGTCGAGTG+AGG + chr3_3:79662761-79662780 Msa0475950:intron 40.0%
AGAAAAGAAGGAGAAGAAGG+AGG + chr3_3:79662821-79662840 Msa0475950:CDS 40.0%
TGAAGAGAAGAAAGGTTTCC+TGG + chr3_3:79662899-79662918 Msa0475950:CDS 40.0%
! GCTTCTCCTTAATTTTGTCC+AGG - chr3_3:79662920-79662939 None:intergenic 40.0%
ACAACAGCTAGTCATGATCA+AGG + chr3_3:79663026-79663045 Msa0475950:CDS 40.0%
CATGATCAAGGAGAGAAGAA+AGG + chr3_3:79663038-79663057 Msa0475950:CDS 40.0%
CATGTTCAGTAGCAGTCTTA+GGG - chr3_3:79663103-79663122 None:intergenic 40.0%
TCATGTTCAGTAGCAGTCTT+AGG - chr3_3:79663104-79663123 None:intergenic 40.0%
!!! CGATCCATTGTGTTGTTTTG+TGG + chr3_3:79663174-79663193 Msa0475950:three_prime_UTR 40.0%
!!! TGTGTTGTTTTGTGGCTTTG+GGG + chr3_3:79663182-79663201 Msa0475950:three_prime_UTR 40.0%
CTGAAACAGAGATCAAAGAC+AGG + chr3_3:79662356-79662375 Msa0475950:CDS 40.0%
GAAACAGAGATCAAAGACAG+GGG + chr3_3:79662358-79662377 Msa0475950:CDS 40.0%
TCTTCTACTTTGGTCTCTGA+TGG - chr3_3:79662490-79662509 None:intergenic 40.0%
AGCTTGAAGAGCTATCAGAT+CGG - chr3_3:79662561-79662580 None:intergenic 40.0%
GATTGAACGTAGTGTCAACA+AGG - chr3_3:79662671-79662690 None:intergenic 40.0%
TATGCATGTATAGTCGAGTG+AGG + chr3_3:79662761-79662780 Msa0475950:intron 40.0%
AGAAAAGAAGGAGAAGAAGG+AGG + chr3_3:79662821-79662840 Msa0475950:CDS 40.0%
TGAAGAGAAGAAAGGTTTCC+TGG + chr3_3:79662899-79662918 Msa0475950:CDS 40.0%
! GCTTCTCCTTAATTTTGTCC+AGG - chr3_3:79662920-79662939 None:intergenic 40.0%
ACAACAGCTAGTCATGATCA+AGG + chr3_3:79663026-79663045 Msa0475950:CDS 40.0%
CATGATCAAGGAGAGAAGAA+AGG + chr3_3:79663038-79663057 Msa0475950:CDS 40.0%
CATGTTCAGTAGCAGTCTTA+GGG - chr3_3:79663103-79663122 None:intergenic 40.0%
TCATGTTCAGTAGCAGTCTT+AGG - chr3_3:79663104-79663123 None:intergenic 40.0%
!!! CGATCCATTGTGTTGTTTTG+TGG + chr3_3:79663174-79663193 Msa0475950:three_prime_UTR 40.0%
!!! TGTGTTGTTTTGTGGCTTTG+GGG + chr3_3:79663182-79663201 Msa0475950:three_prime_UTR 40.0%
GGAGAATCAGAACAAGTACG+AGG + chr3_3:79662315-79662334 Msa0475950:CDS 45.0%
! CTCTGTTTCAGAGTTGGTTG+CGG - chr3_3:79662347-79662366 None:intergenic 45.0%
AAAGAAACACACCAGCCTCT+TGG + chr3_3:79662525-79662544 Msa0475950:CDS 45.0%
ATCGGTGAAGTTTCTCCAAG+AGG - chr3_3:79662543-79662562 None:intergenic 45.0%
!! GCAAGCACTGAAGAGAAGAA+AGG + chr3_3:79662891-79662910 Msa0475950:CDS 45.0%
! TCGTCAGTTTTCTTGTGTCC+TGG - chr3_3:79662945-79662964 None:intergenic 45.0%
! GTTGTTGTTGTCTCAGCAGA+TGG - chr3_3:79663008-79663027 None:intergenic 45.0%
!!! GTGTTGTTTTGTGGCTTTGG+GGG + chr3_3:79663183-79663202 Msa0475950:three_prime_UTR 45.0%
GGAGAATCAGAACAAGTACG+AGG + chr3_3:79662315-79662334 Msa0475950:CDS 45.0%
! CTCTGTTTCAGAGTTGGTTG+CGG - chr3_3:79662347-79662366 None:intergenic 45.0%
AAAGAAACACACCAGCCTCT+TGG + chr3_3:79662525-79662544 Msa0475950:CDS 45.0%
ATCGGTGAAGTTTCTCCAAG+AGG - chr3_3:79662543-79662562 None:intergenic 45.0%
!! GCAAGCACTGAAGAGAAGAA+AGG + chr3_3:79662891-79662910 Msa0475950:CDS 45.0%
! TCGTCAGTTTTCTTGTGTCC+TGG - chr3_3:79662945-79662964 None:intergenic 45.0%
! GTTGTTGTTGTCTCAGCAGA+TGG - chr3_3:79663008-79663027 None:intergenic 45.0%
!!! GTGTTGTTTTGTGGCTTTGG+GGG + chr3_3:79663183-79663202 Msa0475950:three_prime_UTR 45.0%
! TGTTTCAGAGTTGGTTGCGG+TGG - chr3_3:79662344-79662363 None:intergenic 50.0%
GTTGCAACAGCATCCTCTTG+AGG - chr3_3:79662433-79662452 None:intergenic 50.0%
GTGAAGTTTCTCCAAGAGGC+TGG - chr3_3:79662539-79662558 None:intergenic 50.0%
GCATGTATAGTCGAGTGAGG+AGG + chr3_3:79662764-79662783 Msa0475950:intron 50.0%
TCGAGTGAGGAGGAAGTTGA+TGG + chr3_3:79662774-79662793 Msa0475950:CDS 50.0%
!! AGGAGGAAGTTGATGGAGAG+AGG + chr3_3:79662781-79662800 Msa0475950:CDS 50.0%
!! AGGAAGTTGATGGAGAGAGG+AGG + chr3_3:79662784-79662803 Msa0475950:CDS 50.0%
ACAGCAGGAGCAACAACAAC+AGG - chr3_3:79662984-79663003 None:intergenic 50.0%
GCAGTCTTAGGGTGATAACC+AGG - chr3_3:79663092-79663111 None:intergenic 50.0%
! TGTTTCAGAGTTGGTTGCGG+TGG - chr3_3:79662344-79662363 None:intergenic 50.0%
GTTGCAACAGCATCCTCTTG+AGG - chr3_3:79662433-79662452 None:intergenic 50.0%
GTGAAGTTTCTCCAAGAGGC+TGG - chr3_3:79662539-79662558 None:intergenic 50.0%
GCATGTATAGTCGAGTGAGG+AGG + chr3_3:79662764-79662783 Msa0475950:intron 50.0%
TCGAGTGAGGAGGAAGTTGA+TGG + chr3_3:79662774-79662793 Msa0475950:CDS 50.0%
!! AGGAGGAAGTTGATGGAGAG+AGG + chr3_3:79662781-79662800 Msa0475950:CDS 50.0%
!! AGGAAGTTGATGGAGAGAGG+AGG + chr3_3:79662784-79662803 Msa0475950:CDS 50.0%
ACAGCAGGAGCAACAACAAC+AGG - chr3_3:79662984-79663003 None:intergenic 50.0%
GCAGTCTTAGGGTGATAACC+AGG - chr3_3:79663092-79663111 None:intergenic 50.0%
GGAGCAACAACAACAGGTGG+TGG - chr3_3:79662978-79662997 None:intergenic 55.0%
GCAGGAGCAACAACAACAGG+TGG - chr3_3:79662981-79663000 None:intergenic 55.0%
GGAGCAACAACAACAGGTGG+TGG - chr3_3:79662978-79662997 None:intergenic 55.0%
GCAGGAGCAACAACAACAGG+TGG - chr3_3:79662981-79663000 None:intergenic 55.0%
GTCTCAGCAGATGGCACAGC+AGG - chr3_3:79662999-79663018 None:intergenic 60.0%
GTCTCAGCAGATGGCACAGC+AGG - chr3_3:79662999-79663018 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 79662136 79663438 79662136 ID=Msa0475950;Name=Msa0475950
chr3_3 mRNA 79662136 79663438 79662136 ID=Msa0475950-mRNA-1;Parent=Msa0475950;Name=Msa0475950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171|1|1|1|1|1|2|272|222
chr3_3 exon 79662136 79662582 79662136 ID=Msa0475950-mRNA-1:exon:21559;Parent=Msa0475950-mRNA-1
chr3_3 exon 79662774 79663438 79662774 ID=Msa0475950-mRNA-1:exon:21560;Parent=Msa0475950-mRNA-1
chr3_3 five_prime_UTR 79662136 79662306 79662136 ID=Msa0475950-mRNA-1:five_prime_utr;Parent=Msa0475950-mRNA-1
chr3_3 CDS 79662307 79662582 79662307 ID=Msa0475950-mRNA-1:cds;Parent=Msa0475950-mRNA-1
chr3_3 CDS 79662774 79663166 79662774 ID=Msa0475950-mRNA-1:cds;Parent=Msa0475950-mRNA-1
chr3_3 three_prime_UTR 79663167 79663438 79663167 ID=Msa0475950-mRNA-1:three_prime_utr;Parent=Msa0475950-mRNA-1
Gene Sequence

>Msa0475950

ATGGCTGAGGAGAATCAGAACAAGTACGAGGAAACCACCGCAACCAACTCTGAAACAGAGATCAAAGACAGGGGTGTTTTTGATTTTCTAGGTGGTAAGAAAAAGGATGAAGAACATATTAAGCCTCAAGAGGATGCTGTTGCAACTGATTTTAGTCACAAGGTGACTTTGTATGAAGCTCCATCAGAGACCAAAGTAGAAGAAAAAGAAGAAGGTGAAAAGAAACACACCAGCCTCTTGGAGAAACTTCACCGATCTGATAGCTCTTCAAGCTCTTCGAGTGAGGAGGAAGTTGATGGAGAGAGGAGGAAAAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGGAGGACACATCAGTGCCAGTAGAGAAAGTTGATGTTGTTGATGGAACAACAGCAAGCACTGAAGAGAAGAAAGGTTTCCTGGACAAAATTAAGGAGAAGCTTCCAGGACACAAGAAAACTGACGATGTAACAACTCCACCACCTGTTGTTGTTGCTCCTGCTGTGCCATCTGCTGAGACAACAACAACAACAGCTAGTCATGATCAAGGAGAGAAGAAAGGTATTTTGGAAAAGATCAAAGAGAAGATTCCTGGTTATCACCCTAAGACTGCTACTGAACATGAAGACAACAAAGATCATCACAAGGATGAGACTACTTCTCATTGA
Protein sequence

>Msa0475950

MAEENQNKYEETTATNSETEIKDRGVFDFLGGKKKDEEHIKPQEDAVATDFSHKVTLYEAPSETKVEEKEEGEKKHTSLLEKLHRSDSSSSSSSEEEVDGERRKKKKKEKKEKKEDTSVPVEKVDVVDGTTASTEEKKGFLDKIKEKLPGHKKTDDVTTPPPVVVAPAVPSAETTTTTASHDQGEKKGILEKIKEKIPGYHPKTATEHEDNKDHHKDETTSH*