Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162630 | A0A072VIP0 | 85.993 | 614 | 32 | 5 | 1 | 572 | 1 | 602 | 0.0 | 1046 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0162630 | 0.830585 | 2.703262e-55 | -8.615850e-47 |
| Msa0008200 | Msa0162630 | 0.822490 | 2.303958e-53 | -8.615850e-47 |
| Msa0010490 | Msa0162630 | 0.822908 | 1.841878e-53 | -8.615850e-47 |
| Msa0010500 | Msa0162630 | 0.814451 | 1.530440e-51 | -8.615850e-47 |
| Msa0023480 | Msa0162630 | 0.968172 | 2.663684e-128 | -8.615850e-47 |
| Msa0032470 | Msa0162630 | 0.831190 | 1.920726e-55 | -8.615850e-47 |
| Msa0036540 | Msa0162630 | 0.826877 | 2.131134e-54 | -8.615850e-47 |
| Msa0059950 | Msa0162630 | 0.802632 | 5.117076e-49 | -8.615850e-47 |
| Msa0071250 | Msa0162630 | 0.817314 | 3.517410e-52 | -8.615850e-47 |
| Msa0072420 | Msa0162630 | 0.810139 | 1.337190e-50 | -8.615850e-47 |
| Msa0076290 | Msa0162630 | 0.812636 | 3.837552e-51 | -8.615850e-47 |
| Msa0095360 | Msa0162630 | 0.816415 | 5.596259e-52 | -8.615850e-47 |
| Msa0095770 | Msa0162630 | 0.819842 | 9.389347e-53 | -8.615850e-47 |
| Msa0106710 | Msa0162630 | 0.812016 | 5.241913e-51 | -8.615850e-47 |
| Msa0127850 | Msa0162630 | 0.800906 | 1.156849e-48 | -8.615850e-47 |
| Msa0136120 | Msa0162630 | 0.822923 | 1.826640e-53 | -8.615850e-47 |
| Msa0150260 | Msa0162630 | 0.800772 | 1.232150e-48 | -8.615850e-47 |
| Msa0152560 | Msa0162630 | 0.800186 | 1.621599e-48 | -8.615850e-47 |
| Msa0160960 | Msa0162630 | 0.815695 | 8.105024e-52 | -8.615850e-47 |
| Msa0162630 | Msa0202410 | 0.805715 | 1.167581e-49 | -8.615850e-47 |
| Msa0162630 | Msa0202490 | 0.806486 | 8.036485e-50 | -8.615850e-47 |
| Msa0162630 | Msa0204960 | 0.826545 | 2.558464e-54 | -8.615850e-47 |
| Msa0162630 | Msa0216850 | -0.800254 | 1.571396e-48 | -8.615850e-47 |
| Msa0162630 | Msa0233370 | 0.807740 | 4.361410e-50 | -8.615850e-47 |
| Msa0162630 | Msa0244980 | 0.844216 | 8.675696e-59 | -8.615850e-47 |
| Msa0162630 | Msa0245430 | 0.822215 | 2.668243e-53 | -8.615850e-47 |
| Msa0162630 | Msa0245580 | 0.822043 | 2.924737e-53 | -8.615850e-47 |
| Msa0162630 | Msa0256140 | 0.808983 | 2.368748e-50 | -8.615850e-47 |
| Msa0162630 | Msa0278580 | 0.817608 | 3.019766e-52 | -8.615850e-47 |
| Msa0162630 | Msa0283420 | 0.841334 | 5.061301e-58 | -8.615850e-47 |
| Msa0162630 | Msa0284180 | 0.801828 | 7.487617e-49 | -8.615850e-47 |
| Msa0162630 | Msa0285330 | 0.808557 | 2.921855e-50 | -8.615850e-47 |
| Msa0162630 | Msa0296790 | 0.828669 | 7.904330e-55 | -8.615850e-47 |
| Msa0162630 | Msa0307960 | 0.893017 | 9.290842e-75 | -8.615850e-47 |
| Msa0162630 | Msa0317960 | 0.817492 | 3.205833e-52 | -8.615850e-47 |
| Msa0162630 | Msa0318680 | 0.812508 | 4.092678e-51 | -8.615850e-47 |
| Msa0162630 | Msa0321690 | 0.832332 | 1.004252e-55 | -8.615850e-47 |
| Msa0162630 | Msa0322240 | 0.837135 | 6.214613e-57 | -8.615850e-47 |
| Msa0162630 | Msa0324240 | 0.800552 | 1.366128e-48 | -8.615850e-47 |
| Msa0162630 | Msa0336450 | 0.809982 | 1.445343e-50 | -8.615850e-47 |
| Msa0162630 | Msa0339910 | 0.833518 | 5.092518e-56 | -8.615850e-47 |
| Msa0162630 | Msa0363060 | 0.801898 | 7.244158e-49 | -8.615850e-47 |
| Msa0162630 | Msa0363640 | 0.806140 | 9.507136e-50 | -8.615850e-47 |
| Msa0162630 | Msa0378970 | 0.802694 | 4.968646e-49 | -8.615850e-47 |
| Msa0162630 | Msa0385500 | 0.842074 | 3.227638e-58 | -8.615850e-47 |
| Msa0162630 | Msa0386940 | 0.815349 | 9.676891e-52 | -8.615850e-47 |
| Msa0162630 | Msa0388730 | 0.800052 | 1.726910e-48 | -8.615850e-47 |
| Msa0162630 | Msa0395980 | 0.802315 | 5.946367e-49 | -8.615850e-47 |
| Msa0162630 | Msa0416960 | 0.814356 | 1.606043e-51 | -8.615850e-47 |
| Msa0162630 | Msa0419720 | 0.800510 | 1.393445e-48 | -8.615850e-47 |
| Msa0162630 | Msa0432500 | 0.856927 | 2.309834e-62 | -8.615850e-47 |
| Msa0162630 | Msa0440510 | 0.807242 | 5.561380e-50 | -8.615850e-47 |
| Msa0162630 | Msa0443430 | 0.802930 | 4.440938e-49 | -8.615850e-47 |
| Msa0162630 | Msa0460740 | 0.821923 | 3.118529e-53 | -8.615850e-47 |
| Msa0162630 | Msa0475950 | 0.806577 | 7.689175e-50 | -8.615850e-47 |
| Msa0162630 | Msa0482040 | 0.802518 | 5.401011e-49 | -8.615850e-47 |
| Msa0162630 | Msa0482940 | 0.846279 | 2.399716e-59 | -8.615850e-47 |
| Msa0162630 | Msa0489660 | 0.810479 | 1.129568e-50 | -8.615850e-47 |
| Msa0162630 | Msa0491000 | 0.813650 | 2.298557e-51 | -8.615850e-47 |
| Msa0162630 | Msa0509120 | 0.802324 | 5.921563e-49 | -8.615850e-47 |
| Msa0162630 | Msa0511770 | 0.821164 | 4.669851e-53 | -8.615850e-47 |
| Msa0162630 | Msa0518170 | 0.806097 | 9.706505e-50 | -8.615850e-47 |
| Msa0162630 | Msa0523870 | 0.842005 | 3.366685e-58 | -8.615850e-47 |
| Msa0162630 | Msa0531250 | 0.814825 | 1.264894e-51 | -8.615850e-47 |
| Msa0162630 | Msa0539410 | 0.809353 | 1.972913e-50 | -8.615850e-47 |
| Msa0162630 | Msa0542560 | 0.843406 | 1.428753e-58 | -8.615850e-47 |
| Msa0162630 | Msa0544840 | 0.803322 | 3.683969e-49 | -8.615850e-47 |
| Msa0162630 | Msa0566350 | 0.811557 | 6.597854e-51 | -8.615850e-47 |
| Msa0162630 | Msa0566750 | 0.812232 | 4.701622e-51 | -8.615850e-47 |
| Msa0162630 | Msa0569780 | 0.806450 | 8.178971e-50 | -8.615850e-47 |
| Msa0162630 | Msa0588090 | 0.814677 | 1.363648e-51 | -8.615850e-47 |
| Msa0162630 | Msa0600080 | 0.825755 | 3.942396e-54 | -8.615850e-47 |
| Msa0162630 | Msa0600450 | 0.816724 | 4.771236e-52 | -8.615850e-47 |
| Msa0162630 | Msa0604290 | 0.809667 | 1.689286e-50 | -8.615850e-47 |
| Msa0162630 | Msa0610250 | 0.829884 | 4.010580e-55 | -8.615850e-47 |
| Msa0162630 | Msa0622790 | 0.833804 | 4.320344e-56 | -8.615850e-47 |
| Msa0162630 | Msa0624060 | 0.807351 | 5.273434e-50 | -8.615850e-47 |
| Msa0162630 | Msa0625700 | 0.853581 | 2.173296e-61 | -8.615850e-47 |
| Msa0162630 | Msa0628420 | 0.813006 | 3.184953e-51 | -8.615850e-47 |
| Msa0162630 | Msa0634890 | 0.822878 | 1.871617e-53 | -8.615850e-47 |
| Msa0162630 | Msa0640940 | 0.813575 | 2.388269e-51 | -8.615850e-47 |
| Msa0162630 | Msa0659790 | 0.827452 | 1.552557e-54 | -8.615850e-47 |
| Msa0162630 | Msa0679360 | 0.822263 | 2.600883e-53 | -8.615850e-47 |
| Msa0162630 | Msa0680480 | 0.812961 | 3.257647e-51 | -8.615850e-47 |
| Msa0162630 | Msa0693210 | 0.813000 | 3.194079e-51 | -8.615850e-47 |
| Msa0162630 | Msa0703440 | 0.810990 | 8.754645e-51 | -8.615850e-47 |
| Msa0162630 | Msa0705390 | 0.801636 | 8.201420e-49 | -8.615850e-47 |
| Msa0162630 | Msa0705990 | 0.805591 | 1.239607e-49 | -8.615850e-47 |
| Msa0162630 | Msa0719180 | 0.807953 | 3.928103e-50 | -8.615850e-47 |
| Msa0162630 | Msa0741440 | 0.842515 | 2.467612e-58 | -8.615850e-47 |
| Msa0162630 | Msa0746170 | 0.828957 | 6.735718e-55 | -8.615850e-47 |
| Msa0162630 | Msa0746210 | 0.826545 | 2.557579e-54 | -8.615850e-47 |
| Msa0162630 | Msa0750850 | 0.802472 | 5.520145e-49 | -8.615850e-47 |
| Msa0162630 | Msa0772280 | 0.807724 | 4.395473e-50 | -8.615850e-47 |
| Msa0162630 | Msa0786750 | 0.840923 | 6.491084e-58 | -8.615850e-47 |
| Msa0162630 | Msa0822500 | 0.836570 | 8.660932e-57 | -8.615850e-47 |
| Msa0162630 | Msa0829220 | 0.852942 | 3.315321e-61 | -8.615850e-47 |
| Msa0162630 | Msa0861570 | 0.801968 | 7.008523e-49 | -8.615850e-47 |
| Msa0162630 | Msa0865030 | 0.820473 | 6.733868e-53 | -8.615850e-47 |
| Msa0162630 | Msa0878220 | 0.809425 | 1.904726e-50 | -8.615850e-47 |
| Msa0162630 | Msa0894710 | 0.800162 | 1.640124e-48 | -8.615850e-47 |
| Msa0162630 | Msa0944200 | 0.827935 | 1.188762e-54 | -8.615850e-47 |
| Msa0162630 | Msa0980540 | 0.861481 | 9.950997e-64 | -8.615850e-47 |
| Msa0162630 | Msa0985180 | 0.823337 | 1.462571e-53 | -8.615850e-47 |
| Msa0162630 | Msa1037520 | 0.821438 | 4.038400e-53 | -8.615850e-47 |
| Msa0162630 | Msa1071320 | 0.803074 | 4.146331e-49 | -8.615850e-47 |
| Msa0162630 | Msa1089320 | 0.800057 | 1.722843e-48 | -8.615850e-47 |
| Msa0162630 | Msa1089460 | 0.810731 | 9.962928e-51 | -8.615850e-47 |
| Msa0162630 | Msa1096070 | 0.814230 | 1.712866e-51 | -8.615850e-47 |
| Msa0162630 | Msa1131490 | 0.815924 | 7.205540e-52 | -8.615850e-47 |
| Msa0162630 | Msa1137780 | 0.808435 | 3.101694e-50 | -8.615850e-47 |
| Msa0162630 | Msa1178580 | 0.833731 | 4.507497e-56 | -8.615850e-47 |
| Msa0162630 | Msa1179630 | 0.805410 | 1.352798e-49 | -8.615850e-47 |
| Msa0162630 | Msa1206650 | 0.815668 | 8.216232e-52 | -8.615850e-47 |
| Msa0162630 | Msa1207310 | 0.828074 | 1.100132e-54 | -8.615850e-47 |
| Msa0162630 | Msa1225600 | 0.806098 | 9.700583e-50 | -8.615850e-47 |
| Msa0162630 | Msa1233850 | 0.834581 | 2.759814e-56 | -8.615850e-47 |
| Msa0162630 | Msa1246360 | 0.801910 | 7.203276e-49 | -8.615850e-47 |
| Msa0162630 | Msa1276150 | 0.836123 | 1.125316e-56 | -8.615850e-47 |
| Msa0162630 | Msa1297530 | 0.803432 | 3.496360e-49 | -8.615850e-47 |
| Msa0162630 | Msa1307140 | 0.818164 | 2.261544e-52 | -8.615850e-47 |
| Msa0162630 | Msa1307180 | 0.869024 | 4.221022e-66 | -8.615850e-47 |
| Msa0162630 | Msa1310450 | 0.805692 | 1.180809e-49 | -8.615850e-47 |
| Msa0162630 | Msa1315750 | 0.812186 | 4.812995e-51 | -8.615850e-47 |
| Msa0162630 | Msa1316360 | 0.855992 | 4.346740e-62 | -8.615850e-47 |
| Msa0162630 | Msa1331350 | 0.804029 | 2.628385e-49 | -8.615850e-47 |
| Msa0162630 | Msa1341060 | 0.827916 | 1.200848e-54 | -8.615850e-47 |
| Msa0162630 | Msa1346840 | 0.854718 | 1.021217e-61 | -8.615850e-47 |
| Msa0162630 | Msa1352890 | 0.804294 | 2.314817e-49 | -8.615850e-47 |
| Msa0162630 | Msa1364210 | 0.801379 | 9.255922e-49 | -8.615850e-47 |
| Msa0162630 | Msa1369920 | -0.806073 | 9.816715e-50 | -8.615850e-47 |
| Msa0162630 | Msa1370590 | 0.852402 | 4.726659e-61 | -8.615850e-47 |
| Msa0162630 | Msa1378410 | 0.807831 | 4.170799e-50 | -8.615850e-47 |
| Msa0162630 | Msa1384100 | 0.849430 | 3.249613e-60 | -8.615850e-47 |
| Msa0162630 | Msa1395730 | 0.814520 | 1.477578e-51 | -8.615850e-47 |
| Msa0162630 | Msa1401990 | 0.824744 | 6.836317e-54 | -8.615850e-47 |
| Msa0162630 | Msa1407190 | 0.839202 | 1.824648e-57 | -8.615850e-47 |
| Msa0162630 | Msa1411950 | 0.811068 | 8.420159e-51 | -8.615850e-47 |
| Msa0162630 | Msa1413380 | 0.814817 | 1.269782e-51 | -8.615850e-47 |
| Msa0162630 | Msa1416260 | 0.807667 | 4.518682e-50 | -8.615850e-47 |
| Msa0162630 | Msa1432130 | 0.832010 | 1.206239e-55 | -8.615850e-47 |
| Msa0162630 | Msa1437730 | 0.821139 | 4.732132e-53 | -8.615850e-47 |
| Msa0162630 | Msa1442790 | 0.812281 | 4.588437e-51 | -8.615850e-47 |
| Msa0162630 | Msa1444120 | 0.845615 | 3.636988e-59 | -8.615850e-47 |
| Msa0162630 | Msa1458290 | 0.807750 | 4.338625e-50 | -8.615850e-47 |
| Msa0162630 | Msa1462470 | 0.813349 | 2.677692e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162630 | MtrunA17_Chr1g0176821 | 85.993 | 614 | 32 | 5 | 1 | 572 | 1 | 602 | 0.0 | 1046 |
| Msa0162630 | MtrunA17_Chr7g0267701 | 54.791 | 407 | 120 | 7 | 1 | 362 | 1 | 388 | 5.21e-135 | 409 |
| Msa0162630 | MtrunA17_Chr7g0267701 | 32.959 | 267 | 138 | 6 | 317 | 572 | 478 | 714 | 4.37e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162630 | AT5G06440.3 | 52.412 | 311 | 108 | 7 | 1 | 275 | 1 | 307 | 2.05e-101 | 315 |
| Msa0162630 | AT5G06440.2 | 52.412 | 311 | 108 | 7 | 1 | 275 | 1 | 307 | 2.05e-101 | 315 |
| Msa0162630 | AT5G06440.4 | 50.629 | 318 | 110 | 7 | 1 | 275 | 1 | 314 | 1.54e-98 | 308 |
| Msa0162630 | AT5G06440.1 | 51.986 | 277 | 94 | 6 | 1 | 241 | 1 | 274 | 1.92e-89 | 278 |
| Msa0162630 | AT3G11720.1 | 37.220 | 446 | 199 | 12 | 1 | 398 | 1 | 413 | 2.03e-88 | 283 |
| Msa0162630 | AT3G11720.2 | 37.220 | 446 | 199 | 12 | 1 | 398 | 1 | 413 | 2.03e-88 | 283 |
| Msa0162630 | AT3G11720.3 | 37.387 | 444 | 197 | 12 | 1 | 396 | 55 | 465 | 1.16e-87 | 283 |
| Msa0162630 | AT5G06440.5 | 54.506 | 233 | 72 | 4 | 73 | 275 | 5 | 233 | 3.04e-80 | 258 |
| Msa0162630 | AT5G06440.6 | 54.505 | 222 | 67 | 4 | 84 | 275 | 1 | 218 | 2.82e-76 | 247 |
| Msa0162630 | AT3G11720.4 | 36.752 | 351 | 151 | 9 | 84 | 396 | 1 | 318 | 2.03e-67 | 226 |
Find 153 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCCAATATATCTTTATT+TGG | 0.153676 | 1_4:+39837300 | None:intergenic |
| CTATCAGAGCAGAGTCTTTC+AGG | 0.156087 | 1_4:-39836955 | Msa0162630:CDS |
| AGCATCATGGGAACCCTTTC+TGG | 0.171527 | 1_4:-39839701 | Msa0162630:CDS |
| CCAGGTTGGTTCATATTCTT+TGG | 0.225748 | 1_4:-39836917 | Msa0162630:CDS |
| TTTGGACAGGGGAGCGATTA+TGG | 0.248683 | 1_4:-39836899 | Msa0162630:CDS |
| CAGTGTTTGGTTGCTTGTTT+TGG | 0.249795 | 1_4:+39836863 | None:intergenic |
| TGGAATAGATCCAAACTTAA+AGG | 0.262726 | 1_4:-39837007 | Msa0162630:CDS |
| TTGTAGGACAATAGCGAATA+TGG | 0.275278 | 1_4:-39839370 | Msa0162630:intron |
| AGCACAATCACCTTAAGTTT+TGG | 0.278051 | 1_4:+39837241 | None:intergenic |
| GGATTTATTTCCTTTAAGTT+TGG | 0.290070 | 1_4:+39836997 | None:intergenic |
| ACAAGGCCATTTCAATGATT+AGG | 0.298122 | 1_4:-39837464 | Msa0162630:CDS |
| GGTGAGGATTTCTTGAATAA+TGG | 0.311152 | 1_4:-39836574 | Msa0162630:three_prime_UTR |
| TTATATCCGCTCAACTTCTT+TGG | 0.315126 | 1_4:+39836745 | None:intergenic |
| ACCAAATGGATAGACGTTAA+TGG | 0.320372 | 1_4:-39836692 | Msa0162630:three_prime_UTR |
| TATGGCGCCTTCAGGTATTC+TGG | 0.320375 | 1_4:-39837027 | Msa0162630:intron |
| CTAACTTTCTTGATATGTTA+AGG | 0.325906 | 1_4:-39841368 | Msa0162630:CDS |
| CAAGGCCATTTCAATGATTA+GGG | 0.327214 | 1_4:-39837463 | Msa0162630:CDS |
| TCATGTTCAAGAAGACAAAA+AGG | 0.331953 | 1_4:+39836331 | None:intergenic |
| AATTGTTGTTCTTACGAATT+CGG | 0.343897 | 1_4:-39839834 | Msa0162630:intron |
| CATGCAAGGGGACTCTTCAT+TGG | 0.347603 | 1_4:+39837401 | None:intergenic |
| TGATCAGACTCCCGGCTAAA+TGG | 0.356760 | 1_4:+39836467 | None:intergenic |
| ACCATTAACGTCTATCCATT+TGG | 0.358990 | 1_4:+39836691 | None:intergenic |
| ATTGCGCCTACTTCCTCGTT+TGG | 0.362914 | 1_4:+39837552 | None:intergenic |
| TCCCTTTCATACAATGTTAG+TGG | 0.371335 | 1_4:-39840889 | Msa0162630:CDS |
| GGTACCAAATAAAGATATAT+TGG | 0.374923 | 1_4:-39837304 | Msa0162630:CDS |
| AGAAGAATTCAGCAAGGCCT+TGG | 0.384310 | 1_4:-39837886 | Msa0162630:CDS |
| ACGAAAGATTGTGCAGTATA+GGG | 0.388133 | 1_4:-39841887 | Msa0162630:CDS |
| AGCAGAGAGTAAAGAAGATA+TGG | 0.390507 | 1_4:-39836666 | Msa0162630:three_prime_UTR |
| AATAGCGAATATGGATATAA+AGG | 0.391283 | 1_4:-39839361 | Msa0162630:CDS |
| CCCATGATGCTCTTCGACTC+AGG | 0.391541 | 1_4:+39839713 | None:intergenic |
| CCTTGATAAACTTTATTTCA+AGG | 0.392531 | 1_4:-39839320 | Msa0162630:CDS |
| CTCACGACATCCTTCACTTC+AGG | 0.396279 | 1_4:+39839659 | None:intergenic |
| CTTCTACCAATAGTTAAAAC+AGG | 0.403760 | 1_4:-39840958 | Msa0162630:intron |
| CAAGCAACCAAACACTGATT+TGG | 0.407320 | 1_4:-39836857 | Msa0162630:CDS |
| AGTACTGTTGCATCCATTGT+TGG | 0.410622 | 1_4:+39837666 | None:intergenic |
| CAAAGAACTCAAATATCTTC+CGG | 0.413162 | 1_4:+39836491 | None:intergenic |
| CTAATACATCACAAAATGAT+TGG | 0.417293 | 1_4:-39841320 | Msa0162630:CDS |
| GGATGTCGTGAGAGTTGATT+TGG | 0.422438 | 1_4:-39839648 | Msa0162630:CDS |
| AACGAAAGATTGTGCAGTAT+AGG | 0.423682 | 1_4:-39841888 | Msa0162630:CDS |
| GTAGGCGCAATTGCACAAAA+AGG | 0.427817 | 1_4:-39837540 | Msa0162630:CDS |
| GAAGAATTCAGCAAGGCCTT+GGG | 0.429545 | 1_4:-39837885 | Msa0162630:CDS |
| ATATTCCCTAATCATTGAAA+TGG | 0.431197 | 1_4:+39837458 | None:intergenic |
| GTAAGGTATCCTTGTGCAAA+AGG | 0.431633 | 1_4:+39836363 | None:intergenic |
| CTAGAAAATAGCAAAGCATT+TGG | 0.431782 | 1_4:-39837645 | Msa0162630:CDS |
| ATCTCAACATTTGTAAGATC+AGG | 0.432552 | 1_4:+39841838 | None:intergenic |
| CATCAGAAAGAAGTTACTTT+CGG | 0.436473 | 1_4:-39839598 | Msa0162630:intron |
| TTGGTTCATATTCTTTGGAC+AGG | 0.438402 | 1_4:-39836912 | Msa0162630:CDS |
| TGTAACTTACAAACATCAAC+AGG | 0.449928 | 1_4:+39840849 | None:intergenic |
| ACTCTGGCATCCAAAACTTA+AGG | 0.454247 | 1_4:-39837251 | Msa0162630:intron |
| TATCCGCTCGGATGTCAAAC+AGG | 0.456615 | 1_4:-39837502 | Msa0162630:CDS |
| CTTTCAACAAGGTATTCAGC+AGG | 0.462678 | 1_4:+39837759 | None:intergenic |
| TTTCGTGGCCTCTGTCTTCG+AGG | 0.463033 | 1_4:-39839904 | Msa0162630:CDS |
| TCTTGGACCAAATCAGTGTT+TGG | 0.463895 | 1_4:+39836850 | None:intergenic |
| TTTATTTCAAGGCAGCTCAT+TGG | 0.469289 | 1_4:-39839309 | Msa0162630:CDS |
| CCTTGAAATAAAGTTTATCA+AGG | 0.469741 | 1_4:+39839320 | None:intergenic |
| TACCTTGTTGAAAGTAAGCC+AGG | 0.477288 | 1_4:-39837750 | Msa0162630:CDS |
| AGGACCTACTGAGGCAAGCC+AGG | 0.483728 | 1_4:-39836935 | Msa0162630:CDS |
| GAGTTCTTTGACCATTTAGC+CGG | 0.486276 | 1_4:-39836478 | Msa0162630:three_prime_UTR |
| TGAGATTGTAGAATTAGATA+AGG | 0.486871 | 1_4:-39837622 | Msa0162630:CDS |
| AATGTTAGTGGAAGGCTTTG+TGG | 0.487941 | 1_4:-39840877 | Msa0162630:CDS |
| GGAAGAGATTATACAAAGTG+TGG | 0.489400 | 1_4:-39837601 | Msa0162630:CDS |
| CCGACATAGTGTGTCAAAAC+CGG | 0.492257 | 1_4:-39836510 | Msa0162630:three_prime_UTR |
| TAAACCTTGTGATATAAATG+AGG | 0.496793 | 1_4:-39837337 | Msa0162630:CDS |
| TGTCATCTGAAGACATGTCT+TGG | 0.497622 | 1_4:+39836833 | None:intergenic |
| TACTAAGCTACAGAGATTTG+TGG | 0.498135 | 1_4:+39836615 | None:intergenic |
| TTCCACTAACATTGTATGAA+AGG | 0.498448 | 1_4:+39840887 | None:intergenic |
| CTATCAATTTCTTCCATGCA+AGG | 0.506110 | 1_4:+39837387 | None:intergenic |
| GAAATAAAGTTTATCAAGGA+TGG | 0.510256 | 1_4:+39839324 | None:intergenic |
| TTTCAGGTTTATGTATCTCA+TGG | 0.519297 | 1_4:-39840728 | Msa0162630:intron |
| AAGGGCGGAGACTTAATCTC+TGG | 0.520143 | 1_4:+39836382 | None:intergenic |
| GTCGTGAGAGTTGATTTGGT+TGG | 0.521559 | 1_4:-39839644 | Msa0162630:CDS |
| TCCACTAACATTGTATGAAA+GGG | 0.522752 | 1_4:+39840888 | None:intergenic |
| CCTGAGTCGAAGAGCATCAT+GGG | 0.525362 | 1_4:-39839713 | Msa0162630:CDS |
| GTGAGAGTTGATTTGGTTGG+AGG | 0.529060 | 1_4:-39839641 | Msa0162630:CDS |
| TTTCATACAATGTTAGTGGA+AGG | 0.533564 | 1_4:-39840885 | Msa0162630:CDS |
| ATTCAAGAAATCCTCACCTA+TGG | 0.533621 | 1_4:+39836579 | None:intergenic |
| CGTCGTCGTTGAAACCAGAA+AGG | 0.534938 | 1_4:+39839687 | None:intergenic |
| AGACTCTGCTCTGATAGAGT+TGG | 0.537627 | 1_4:+39836961 | None:intergenic |
| AGGAGTACTTCAGATGATCA+TGG | 0.539089 | 1_4:-39841348 | Msa0162630:CDS |
| CCATGATGCTCTTCGACTCA+GGG | 0.540019 | 1_4:+39839714 | None:intergenic |
| TCAAGGCAGCTCATTGGCAA+TGG | 0.540578 | 1_4:-39839303 | Msa0162630:CDS |
| ATCAATTTCTTCCATGCAAG+GGG | 0.540811 | 1_4:+39837389 | None:intergenic |
| GTATGAAAGGGAGTTCCCTC+CGG | 0.540998 | 1_4:+39840900 | None:intergenic |
| ACCAAATAAAGATATATTGG+AGG | 0.544818 | 1_4:-39837301 | Msa0162630:CDS |
| TTCGTGGCCTCTGTCTTCGA+GGG | 0.545193 | 1_4:-39839903 | Msa0162630:CDS |
| AAGAAAGGATGAAGGTTTCG+TGG | 0.545994 | 1_4:-39839919 | Msa0162630:intron |
| CCCTGAGTCGAAGAGCATCA+TGG | 0.547608 | 1_4:-39839714 | Msa0162630:CDS |
| TGGAGGCTTTGCTTTGCAGA+AGG | 0.548882 | 1_4:-39839624 | Msa0162630:CDS |
| TATCAATTTCTTCCATGCAA+GGG | 0.550940 | 1_4:+39837388 | None:intergenic |
| TAGCCGGGAGTCTGATCACT+TGG | 0.551391 | 1_4:-39836462 | Msa0162630:three_prime_UTR |
| TAATGACATGTCACCAACAA+TGG | 0.552227 | 1_4:-39837679 | Msa0162630:CDS |
| TTGTAAGATCAGGTGAGGCA+AGG | 0.553784 | 1_4:+39841848 | None:intergenic |
| CCTACTGAGGCAAGCCAGGT+TGG | 0.558302 | 1_4:-39836931 | Msa0162630:CDS |
| TATAAATGAGGTTATTGTTG+AGG | 0.560611 | 1_4:-39837325 | Msa0162630:CDS |
| CCAACCTGGCTTGCCTCAGT+AGG | 0.565505 | 1_4:+39836931 | None:intergenic |
| TAAGGTATCCTTGTGCAAAA+GGG | 0.569231 | 1_4:+39836364 | None:intergenic |
| GAAGCACCTTCGACTAACTC+TGG | 0.570992 | 1_4:-39837267 | Msa0162630:CDS |
| TGTAAGATCAGGTGAGGCAA+GGG | 0.572242 | 1_4:+39841849 | None:intergenic |
| ACACCAAGTGATCAGACTCC+CGG | 0.575331 | 1_4:+39836459 | None:intergenic |
| CACGACTACTAGTGCATCAG+AGG | 0.576208 | 1_4:-39837823 | Msa0162630:CDS |
| AGTTCTTTGACCATTTAGCC+GGG | 0.579921 | 1_4:-39836477 | Msa0162630:three_prime_UTR |
| AAGAACTACAAATTTGTGCA+TGG | 0.581856 | 1_4:-39836213 | Msa0162630:three_prime_UTR |
| GGTTCATATTCTTTGGACAG+GGG | 0.582356 | 1_4:-39836910 | Msa0162630:CDS |
| TGCACAAGGATACCTTACTC+AGG | 0.584534 | 1_4:-39836358 | Msa0162630:three_prime_UTR |
| ATTCGTAGAACATAAAACTT+CGG | 0.587441 | 1_4:-39841397 | Msa0162630:CDS |
| CCAAAGAATATGAACCAACC+TGG | 0.590279 | 1_4:+39836917 | None:intergenic |
| CAATGAAGAGTCCCCTTGCA+TGG | 0.592248 | 1_4:-39837400 | Msa0162630:CDS |
| ATGACAAAGTCAAGTCGAGA+AGG | 0.592249 | 1_4:-39836816 | Msa0162630:CDS |
| ACAAGATAGTATACATTACA+TGG | 0.593321 | 1_4:+39836278 | None:intergenic |
| TGGTTTCAGACTTTATCAGA+AGG | 0.594007 | 1_4:-39839283 | Msa0162630:intron |
| TGTTATGTATCGTGAAGGAC+CGG | 0.595211 | 1_4:-39840919 | Msa0162630:CDS |
| TACCAATAGTTAAAACAGGA+TGG | 0.596682 | 1_4:-39840954 | Msa0162630:intron |
| TGGTTCATATTCTTTGGACA+GGG | 0.596871 | 1_4:-39836911 | Msa0162630:CDS |
| CCAAATAAAGATATATTGGA+GGG | 0.596929 | 1_4:-39837300 | Msa0162630:CDS |
| TTTCAACAAGGTATTCAGCA+GGG | 0.601536 | 1_4:+39837760 | None:intergenic |
| AAGAATTCAGCAAGGCCTTG+GGG | 0.602284 | 1_4:-39837884 | Msa0162630:CDS |
| GAGGGAAATAGTTATCCGCT+CGG | 0.602801 | 1_4:-39837514 | Msa0162630:CDS |
| AAAGCTAGTCGAGGCCATCT+CGG | 0.603504 | 1_4:+39837425 | None:intergenic |
| CGACGCAATTCCTGAAGTGA+AGG | 0.604308 | 1_4:-39839669 | Msa0162630:CDS |
| TGGATGCCAGAGTTAGTCGA+AGG | 0.605948 | 1_4:+39837261 | None:intergenic |
| CACCTGGCTTACTTTCAACA+AGG | 0.612895 | 1_4:+39837748 | None:intergenic |
| GTCGTCGTTGAAACCAGAAA+GGG | 0.613736 | 1_4:+39839688 | None:intergenic |
| GTCATTCCAAACGAGGAAGT+AGG | 0.615918 | 1_4:-39837558 | Msa0162630:CDS |
| TTCCGTGTTATGTATCGTGA+AGG | 0.616474 | 1_4:-39840924 | Msa0162630:CDS |
| AGATTGTGCAGTATAGGGAG+AGG | 0.617001 | 1_4:-39841882 | Msa0162630:CDS |
| AGAGATTATACAAAGTGTGG+AGG | 0.618599 | 1_4:-39837598 | Msa0162630:CDS |
| TTAGTGGAAGGCTTTGTGGA+CGG | 0.620121 | 1_4:-39840873 | Msa0162630:CDS |
| AACATTTGTAAGATCAGGTG+AGG | 0.620685 | 1_4:+39841843 | None:intergenic |
| AGCGAATATGGATATAAAGG+TGG | 0.622613 | 1_4:-39839358 | Msa0162630:CDS |
| TAGTGAAATATACTCATACA+AGG | 0.623972 | 1_4:-39836546 | Msa0162630:three_prime_UTR |
| ATAACCTCATTTATATCACA+AGG | 0.624766 | 1_4:+39837333 | None:intergenic |
| ATAAAGTTTATCAAGGATGG+AGG | 0.627020 | 1_4:+39839327 | None:intergenic |
| GGCGGAGACTTAATCTCTGG+AGG | 0.628667 | 1_4:+39836385 | None:intergenic |
| AATGTACCAAAGAAGTTGAG+CGG | 0.629444 | 1_4:-39836751 | Msa0162630:CDS |
| TTCATTGGCAAAGCTAGTCG+AGG | 0.630398 | 1_4:+39837416 | None:intergenic |
| GCATCAGAGGTTGCAAACAG+TGG | 0.632395 | 1_4:-39837810 | Msa0162630:CDS |
| GTACTTCAGATGATCATGGA+AGG | 0.636905 | 1_4:-39841344 | Msa0162630:CDS |
| ATATCGATTACATTCCGAGA+TGG | 0.639455 | 1_4:-39837439 | Msa0162630:CDS |
| GGTATCCTTGTGCAAAAGGG+CGG | 0.643583 | 1_4:+39836367 | None:intergenic |
| TTGCGAATTCTAGCATACAA+TGG | 0.644701 | 1_4:+39837858 | None:intergenic |
| GGCTATAGAAACATTAGACA+AGG | 0.647239 | 1_4:-39837481 | Msa0162630:CDS |
| TATGTATCGTGAAGGACCGG+AGG | 0.650001 | 1_4:-39840916 | Msa0162630:CDS |
| AGACATACCTCGAGTCACAA+TGG | 0.669331 | 1_4:+39836777 | None:intergenic |
| ATGTATCGTGAAGGACCGGA+GGG | 0.674262 | 1_4:-39840915 | Msa0162630:CDS |
| AGAATTCAGCAAGGCCTTGG+GGG | 0.674619 | 1_4:-39837883 | Msa0162630:CDS |
| ACTAACACCATTGTGACTCG+AGG | 0.681689 | 1_4:-39836784 | Msa0162630:CDS |
| GAGTCTTTCAGGACCTACTG+AGG | 0.685532 | 1_4:-39836944 | Msa0162630:CDS |
| AGTAAGTGTCATTCCAAACG+AGG | 0.687260 | 1_4:-39837565 | Msa0162630:CDS |
| ACAGCTTCCCTCGAAGACAG+AGG | 0.692663 | 1_4:+39839896 | None:intergenic |
| TGATAAAGAAGAATTCAGCA+AGG | 0.714264 | 1_4:-39837892 | Msa0162630:CDS |
| CTTGTTGAAAGTAAGCCAGG+TGG | 0.717879 | 1_4:-39837747 | Msa0162630:CDS |
| GTCCTTCACGATACATAACA+CGG | 0.728304 | 1_4:+39840922 | None:intergenic |
| TAGCCTGTTTGACATCCGAG+CGG | 0.766889 | 1_4:+39837499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATTCTATTATTTATTT+TGG | - | chr1_4:39836324-39836343 | Msa0162630:three_prime_UTR | 10.0% |
| !!! | TCTTTTTTATTTTACTTTTA+TGG | - | chr1_4:39841031-39841050 | Msa0162630:intron | 10.0% |
| !! | TATAAAAAATATATATGCTT+CGG | - | chr1_4:39841349-39841368 | Msa0162630:CDS | 10.0% |
| !!! | TATTTTACTAATTGTATGTT+TGG | - | chr1_4:39836633-39836652 | Msa0162630:three_prime_UTR | 15.0% |
| !! | TACATATATAAGAAACAAAA+CGG | + | chr1_4:39836842-39836861 | None:intergenic | 15.0% |
| !!! | TTCAATAATTGAAATTTTGT+AGG | - | chr1_4:39838690-39838709 | Msa0162630:intron | 15.0% |
| !! | AATAAACACAATTTATGATA+AGG | + | chr1_4:39839169-39839188 | None:intergenic | 15.0% |
| !! | GTTGTAACACATAATATAAA+AGG | - | chr1_4:39837455-39837474 | Msa0162630:CDS | 20.0% |
| !! | TACTTAAACATAATGACATT+AGG | - | chr1_4:39838514-39838533 | Msa0162630:intron | 20.0% |
| !! | ACTTAAACATAATGACATTA+GGG | - | chr1_4:39838515-39838534 | Msa0162630:intron | 20.0% |
| !!! | ATAAAAGTTCATTTTCTTAG+AGG | + | chr1_4:39838658-39838677 | None:intergenic | 20.0% |
| !! | ACAAGAAAAAGAAAAAGTAA+TGG | - | chr1_4:39838907-39838926 | Msa0162630:intron | 20.0% |
| !! | TAGATAATTAAAGAATCCTT+GGG | + | chr1_4:39838975-39838994 | None:intergenic | 20.0% |
| !! | ATAGATAATTAAAGAATCCT+TGG | + | chr1_4:39838976-39838995 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTTGTTTGTTAGA+TGG | - | chr1_4:39839026-39839045 | Msa0162630:intron | 20.0% |
| !! | GAAAGATTACAAAGAAAATA+AGG | - | chr1_4:39839052-39839071 | Msa0162630:intron | 20.0% |
| !! | TCATTGAATAAATCAACAAA+TGG | - | chr1_4:39839085-39839104 | Msa0162630:intron | 20.0% |
| !! | TTTATTCCAAATCTTGTTAA+TGG | - | chr1_4:39839183-39839202 | Msa0162630:intron | 20.0% |
| !!! | TGATAAAATCTTGTTTTAGA+TGG | + | chr1_4:39839328-39839347 | None:intergenic | 20.0% |
| !!! | TTTATCATATTTTCCACAAT+TGG | - | chr1_4:39839341-39839360 | Msa0162630:CDS | 20.0% |
| !! | ATATATAGAAAATGACATGA+AGG | + | chr1_4:39839810-39839829 | None:intergenic | 20.0% |
| !! | GAGTATAAGAAATATAAGTT+TGG | + | chr1_4:39839920-39839939 | None:intergenic | 20.0% |
| !! | TATATGAGCATAATTGAAAT+AGG | + | chr1_4:39840065-39840084 | None:intergenic | 20.0% |
| !!! | ACAAGGTTTAATAATTTTTG+TGG | + | chr1_4:39840729-39840748 | None:intergenic | 20.0% |
| !! | AATATAACTTTGACATTCTT+AGG | + | chr1_4:39840867-39840886 | None:intergenic | 20.0% |
| !! | ACGAAAAATATTTGTCTATA+AGG | + | chr1_4:39840928-39840947 | None:intergenic | 20.0% |
| !! | ATTGATGTTACATATTTAGA+TGG | - | chr1_4:39840999-39841018 | Msa0162630:intron | 20.0% |
| ! | TGTCTTCTGTTAGTAATTTA+TGG | - | chr1_4:39836416-39836435 | Msa0162630:three_prime_UTR | 25.0% |
| !!! | TTTGTAGTTTTGATACATTC+AGG | - | chr1_4:39836545-39836564 | Msa0162630:three_prime_UTR | 25.0% |
| !!! | TTGTAGTTTTGATACATTCA+GGG | - | chr1_4:39836546-39836565 | Msa0162630:three_prime_UTR | 25.0% |
| !!! | TTACAGTTCTGAAATCATTT+AGG | - | chr1_4:39836570-39836589 | Msa0162630:three_prime_UTR | 25.0% |
| ! | ATTCGTAGAACATAAAACTT+CGG | - | chr1_4:39836679-39836698 | Msa0162630:three_prime_UTR | 25.0% |
| ! | CTAACTTTCTTGATATGTTA+AGG | - | chr1_4:39836708-39836727 | Msa0162630:exon | 25.0% |
| ! | CTAATACATCACAAAATGAT+TGG | - | chr1_4:39836756-39836775 | Msa0162630:CDS | 25.0% |
| ! | AATTAGACATACAAAACAGA+TGG | + | chr1_4:39836890-39836909 | None:intergenic | 25.0% |
| ! | TTGCAATTTATGTACAATGT+TGG | - | chr1_4:39836939-39836958 | Msa0162630:CDS | 25.0% |
| !!! | TTTAAACAATAGAGCATTGT+TGG | + | chr1_4:39836985-39837004 | None:intergenic | 25.0% |
| !!! | GAGTTATTTTCATCATTTTC+AGG | - | chr1_4:39837332-39837351 | Msa0162630:CDS | 25.0% |
| ! | AGACTTCTCTTTACAAAAAA+TGG | - | chr1_4:39837372-39837391 | Msa0162630:CDS | 25.0% |
| ! | AATGACGACAAAAATGTTAA+AGG | + | chr1_4:39837415-39837434 | None:intergenic | 25.0% |
| ! | GTCGTCATTATTTATACATA+AGG | - | chr1_4:39837426-39837445 | Msa0162630:CDS | 25.0% |
| ! | CAAGGTATAAAATAACTTTC+AGG | + | chr1_4:39837587-39837606 | None:intergenic | 25.0% |
| !!! | CTGAAAGTTATTTTATACCT+TGG | - | chr1_4:39837585-39837604 | Msa0162630:CDS | 25.0% |
| ! | TAAGTAACTTTATCGCTATA+AGG | - | chr1_4:39837623-39837642 | Msa0162630:CDS | 25.0% |
| !! | AAGTATCAGTTACACTTTTA+GGG | + | chr1_4:39837922-39837941 | None:intergenic | 25.0% |
| ! | CTAAATGAACATTGTTAAAC+AGG | + | chr1_4:39837955-39837974 | None:intergenic | 25.0% |
| ! | CTGTTTAACAATGTTCATTT+AGG | - | chr1_4:39837953-39837972 | Msa0162630:intron | 25.0% |
| ! | TTTAACAATGTTCATTTAGG+TGG | - | chr1_4:39837956-39837975 | Msa0162630:intron | 25.0% |
| !!! | CATGATAAGATTTTGAAAGT+AGG | + | chr1_4:39837997-39838016 | None:intergenic | 25.0% |
| ! | AAAAATGAAAACCTTCAAAG+CGG | + | chr1_4:39838110-39838129 | None:intergenic | 25.0% |
| !!! | TCTGATTTTGTTCTGAATTT+TGG | - | chr1_4:39838134-39838153 | Msa0162630:intron | 25.0% |
| !! | AATTGTTGTTCTTACGAATT+CGG | - | chr1_4:39838242-39838261 | Msa0162630:intron | 25.0% |
| ! | CTTAAACATAATGACATTAG+GGG | - | chr1_4:39838516-39838535 | Msa0162630:intron | 25.0% |
| ! | AATTTACTTGAATTGAGTGA+TGG | - | chr1_4:39838557-39838576 | Msa0162630:intron | 25.0% |
| ! | ACATGCAATGAAAAATGAAA+AGG | - | chr1_4:39838630-39838649 | Msa0162630:intron | 25.0% |
| ! | AATAGCGAATATGGATATAA+AGG | - | chr1_4:39838715-39838734 | Msa0162630:intron | 25.0% |
| ! | GAAATAAAGTTTATCAAGGA+TGG | + | chr1_4:39838755-39838774 | None:intergenic | 25.0% |
| ! | CCTTGAAATAAAGTTTATCA+AGG | + | chr1_4:39838759-39838778 | None:intergenic | 25.0% |
| !! | CCTTGATAAACTTTATTTCA+AGG | - | chr1_4:39838756-39838775 | Msa0162630:intron | 25.0% |
| ! | AGATAATTAAAGAATCCTTG+GGG | + | chr1_4:39838974-39838993 | None:intergenic | 25.0% |
| ! | ATCTCTTAAGTGTAACTATT+AGG | - | chr1_4:39839237-39839256 | Msa0162630:intron | 25.0% |
| ! | AATCTTAAGAATCACTGATA+AGG | + | chr1_4:39839286-39839305 | None:intergenic | 25.0% |
| !!! | AATCTTGTTTTAGATGGTTT+AGG | + | chr1_4:39839322-39839341 | None:intergenic | 25.0% |
| ! | TATTTGTCTTACTTTCTTGT+TGG | - | chr1_4:39839421-39839440 | Msa0162630:intron | 25.0% |
| ! | CAAATATGTGACTAAATGTT+GGG | + | chr1_4:39839457-39839476 | None:intergenic | 25.0% |
| ! | ACAAATATGTGACTAAATGT+TGG | + | chr1_4:39839458-39839477 | None:intergenic | 25.0% |
| ! | TAAATGTTAATCAAGTAGTC+AGG | + | chr1_4:39839641-39839660 | None:intergenic | 25.0% |
| ! | TTTGACATTCAAGCTTAAAT+GGG | + | chr1_4:39839708-39839727 | None:intergenic | 25.0% |
| ! | ATTTGACATTCAAGCTTAAA+TGG | + | chr1_4:39839709-39839728 | None:intergenic | 25.0% |
| ! | TATCATGGTTTAAGTATCTT+AGG | + | chr1_4:39839834-39839853 | None:intergenic | 25.0% |
| ! | TGTAACTTAGAAGTGAAAAT+TGG | + | chr1_4:39839881-39839900 | None:intergenic | 25.0% |
| ! | ATAAGAAATATAAGTTTGGC+AGG | + | chr1_4:39839916-39839935 | None:intergenic | 25.0% |
| ! | ATGAAAGTCATATACTTACT+AGG | - | chr1_4:39839957-39839976 | Msa0162630:intron | 25.0% |
| ! | CACAACCTATAATATTATCA+GGG | + | chr1_4:39840147-39840166 | None:intergenic | 25.0% |
| ! | TGAGATTGTAGAATTAGATA+AGG | - | chr1_4:39840454-39840473 | Msa0162630:intron | 25.0% |
| ! | ATATTCCCTAATCATTGAAA+TGG | + | chr1_4:39840621-39840640 | None:intergenic | 25.0% |
| ! | TAAACCTTGTGATATAAATG+AGG | - | chr1_4:39840739-39840758 | Msa0162630:intron | 25.0% |
| ! | ATAACCTCATTTATATCACA+AGG | + | chr1_4:39840746-39840765 | None:intergenic | 25.0% |
| ! | TATAAATGAGGTTATTGTTG+AGG | - | chr1_4:39840751-39840770 | Msa0162630:intron | 25.0% |
| ! | GGTACCAAATAAAGATATAT+TGG | - | chr1_4:39840772-39840791 | Msa0162630:intron | 25.0% |
| ! | ACCAAATAAAGATATATTGG+AGG | - | chr1_4:39840775-39840794 | Msa0162630:intron | 25.0% |
| ! | CCAAATAAAGATATATTGGA+GGG | - | chr1_4:39840776-39840795 | Msa0162630:intron | 25.0% |
| !! | CAAATATTTTTCGTTCCATA+TGG | - | chr1_4:39840934-39840953 | Msa0162630:CDS | 25.0% |
| !! | GGATTTATTTCCTTTAAGTT+TGG | + | chr1_4:39841082-39841101 | None:intergenic | 25.0% |
| !! | AAAGAAGATATGGTATTTTG+TGG | - | chr1_4:39841420-39841439 | Msa0162630:intron | 25.0% |
| ! | TAGTGAAATATACTCATACA+AGG | - | chr1_4:39841530-39841549 | Msa0162630:intron | 25.0% |
| ! | GTAACGAAGATCTATAAAAA+AGG | + | chr1_4:39841672-39841691 | None:intergenic | 25.0% |
| ! | ATGGTTAGCAGAAAAATAAA+TGG | + | chr1_4:39841782-39841801 | None:intergenic | 25.0% |
| ! | ACAAGATAGTATACATTACA+TGG | + | chr1_4:39841801-39841820 | None:intergenic | 25.0% |
| ATCTCAACATTTGTAAGATC+AGG | + | chr1_4:39836241-39836260 | None:intergenic | 30.0% | |
| TCATCTTCTAATTCTGATGA+TGG | + | chr1_4:39836295-39836314 | None:intergenic | 30.0% | |
| TCATCAGAATTAGAAGATGA+AGG | - | chr1_4:39836295-39836314 | Msa0162630:three_prime_UTR | 30.0% | |
| TCTAACCATATGATTCAGTT+TGG | + | chr1_4:39836443-39836462 | None:intergenic | 30.0% | |
| TGTGACTTTCATAGTTAGTT+TGG | + | chr1_4:39836481-39836500 | None:intergenic | 30.0% | |
| AACTATGAAAGTCACATTCT+AGG | - | chr1_4:39836485-39836504 | Msa0162630:three_prime_UTR | 30.0% | |
| ! | GTGTCTTTTGTTAGTTAACA+TGG | + | chr1_4:39836512-39836531 | None:intergenic | 30.0% |
| !!! | TTGGTTTTGTGCAGAATATA+AGG | - | chr1_4:39836652-39836671 | Msa0162630:three_prime_UTR | 30.0% |
| ATCTTCCATAAGTTTAGATC+CGG | - | chr1_4:39836862-39836881 | Msa0162630:CDS | 30.0% | |
| AAATTCTCTTCAGAGAAATC+AGG | - | chr1_4:39836913-39836932 | Msa0162630:CDS | 30.0% | |
| ! | ATTTATGTACAATGTTGGCT+TGG | - | chr1_4:39836944-39836963 | Msa0162630:CDS | 30.0% |
| ACCTGATTATGTTAAGCTTT+AGG | - | chr1_4:39837040-39837059 | Msa0162630:intron | 30.0% | |
| TCCTAAAGCTTAACATAATC+AGG | + | chr1_4:39837044-39837063 | None:intergenic | 30.0% | |
| ATCAGCTATGACTCAATAAT+TGG | + | chr1_4:39837091-39837110 | None:intergenic | 30.0% | |
| CTTCTACCAATAGTTAAAAC+AGG | - | chr1_4:39837118-39837137 | Msa0162630:intron | 30.0% | |
| TACCAATAGTTAAAACAGGA+TGG | - | chr1_4:39837122-39837141 | Msa0162630:intron | 30.0% | |
| TCCACTAACATTGTATGAAA+GGG | + | chr1_4:39837191-39837210 | None:intergenic | 30.0% | |
| TTCCACTAACATTGTATGAA+AGG | + | chr1_4:39837192-39837211 | None:intergenic | 30.0% | |
| TTTCATACAATGTTAGTGGA+AGG | - | chr1_4:39837191-39837210 | Msa0162630:intron | 30.0% | |
| TGTAACTTACAAACATCAAC+AGG | + | chr1_4:39837230-39837249 | None:intergenic | 30.0% | |
| !! | GCGAGTTGATATCAATAATA+CGG | + | chr1_4:39837302-39837321 | None:intergenic | 30.0% |
| !! | TTTCAGGTTTATGTATCTCA+TGG | - | chr1_4:39837348-39837367 | Msa0162630:CDS | 30.0% |
| !! | TAGATTCAAAAGCATTTCCA+AGG | + | chr1_4:39837605-39837624 | None:intergenic | 30.0% |
| ATTAAACTGTTTATCCGAAG+AGG | + | chr1_4:39837650-39837669 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAGT+AGG | - | chr1_4:39837896-39837915 | Msa0162630:CDS | 30.0% | |
| ! | CAAGTATCAGTTACACTTTT+AGG | + | chr1_4:39837923-39837942 | None:intergenic | 30.0% |
| ATCATGTGAATGTTTACAGA+AGG | - | chr1_4:39838011-39838030 | Msa0162630:intron | 30.0% | |
| !!! | GTGATAATTTTAGTTAACGC+TGG | + | chr1_4:39838078-39838097 | None:intergenic | 30.0% |
| AAAATGAAAACCTTCAAAGC+GGG | + | chr1_4:39838109-39838128 | None:intergenic | 30.0% | |
| !! | TGTTCTGAATTTTGGAAGAA+AGG | - | chr1_4:39838142-39838161 | Msa0162630:intron | 30.0% |
| !! | AATTTTGGAAGAAAGGATGA+AGG | - | chr1_4:39838149-39838168 | Msa0162630:intron | 30.0% |
| ! | CATCAGAAAGAAGTTACTTT+CGG | - | chr1_4:39838478-39838497 | Msa0162630:intron | 30.0% |
| ATAAAGTTTATCAAGGATGG+AGG | + | chr1_4:39838752-39838771 | None:intergenic | 30.0% | |
| TAGGGTAGTAAAAAATGCTT+TGG | + | chr1_4:39839141-39839160 | None:intergenic | 30.0% | |
| ATTTATGATAAGGCAACGTA+GGG | + | chr1_4:39839159-39839178 | None:intergenic | 30.0% | |
| AATTTATGATAAGGCAACGT+AGG | + | chr1_4:39839160-39839179 | None:intergenic | 30.0% | |
| GCTAAACCATTAACAAGATT+TGG | + | chr1_4:39839192-39839211 | None:intergenic | 30.0% | |
| ! | GTTTAGCCTATTGTTTTCTT+TGG | - | chr1_4:39839205-39839224 | Msa0162630:intron | 30.0% |
| TTAAGAATCACTGATAAGGA+AGG | + | chr1_4:39839282-39839301 | None:intergenic | 30.0% | |
| ACATTGAAATGAACCAATTG+TGG | + | chr1_4:39839357-39839376 | None:intergenic | 30.0% | |
| TTGGTTCATTTCAATGTTGT+CGG | - | chr1_4:39839360-39839379 | Msa0162630:CDS | 30.0% | |
| TTTAGTCACATACAACATTG+TGG | - | chr1_4:39839657-39839676 | Msa0162630:CDS | 30.0% | |
| TTAGTCACATACAACATTGT+GGG | - | chr1_4:39839658-39839677 | Msa0162630:CDS | 30.0% | |
| CATACAACTTACAAGTATCA+TGG | + | chr1_4:39839849-39839868 | None:intergenic | 30.0% | |
| CTTCATCATGCTAATTAACA+TGG | - | chr1_4:39839985-39840004 | Msa0162630:intron | 30.0% | |
| ACCAACCCTGATAATATTAT+AGG | - | chr1_4:39840139-39840158 | Msa0162630:intron | 30.0% | |
| ACCTATAATATTATCAGGGT+TGG | + | chr1_4:39840143-39840162 | None:intergenic | 30.0% | |
| CCACAACCTATAATATTATC+AGG | + | chr1_4:39840148-39840167 | None:intergenic | 30.0% | |
| CCTGATAATATTATAGGTTG+TGG | - | chr1_4:39840145-39840164 | Msa0162630:intron | 30.0% | |
| TGATAAAGAAGAATTCAGCA+AGG | - | chr1_4:39840184-39840203 | Msa0162630:intron | 30.0% | |
| ! | CTAGAAAATAGCAAAGCATT+TGG | - | chr1_4:39840431-39840450 | Msa0162630:intron | 30.0% |
| AATTGCACAAAAAGGAAAGA+GGG | - | chr1_4:39840544-39840563 | Msa0162630:intron | 30.0% | |
| TATCAATTTCTTCCATGCAA+GGG | + | chr1_4:39840691-39840710 | None:intergenic | 30.0% | |
| CCCTCCAATATATCTTTATT+TGG | + | chr1_4:39840779-39840798 | None:intergenic | 30.0% | |
| TTATTTCGAAACTAGCCATA+TGG | + | chr1_4:39840952-39840971 | None:intergenic | 30.0% | |
| TGGAATAGATCCAAACTTAA+AGG | - | chr1_4:39841069-39841088 | Msa0162630:intron | 30.0% | |
| ! | AGAGTTGGAATCATTTTGTT+GGG | + | chr1_4:39841103-39841122 | None:intergenic | 30.0% |
| ! | TAGAGTTGGAATCATTTTGT+TGG | + | chr1_4:39841104-39841123 | None:intergenic | 30.0% |
| CAAAGAACTCAAATATCTTC+CGG | + | chr1_4:39841588-39841607 | None:intergenic | 30.0% | |
| AGAAAAACATCTATTGAGAG+CGG | - | chr1_4:39841642-39841661 | Msa0162630:intron | 30.0% | |
| TCATGTTCAAGAAGACAAAA+AGG | + | chr1_4:39841748-39841767 | None:intergenic | 30.0% | |
| AAGAACTACAAATTTGTGCA+TGG | - | chr1_4:39841863-39841882 | Msa0162630:CDS | 30.0% | |
| AACGAAAGATTGTGCAGTAT+AGG | - | chr1_4:39836188-39836207 | Msa0162630:three_prime_UTR | 35.0% | |
| ACGAAAGATTGTGCAGTATA+GGG | - | chr1_4:39836189-39836208 | Msa0162630:three_prime_UTR | 35.0% | |
| AACATTTGTAAGATCAGGTG+AGG | + | chr1_4:39836236-39836255 | None:intergenic | 35.0% | |
| !! | CTTCTAATTCTGATGATGGT+AGG | + | chr1_4:39836291-39836310 | None:intergenic | 35.0% |
| TCAGAATTAGAAGATGAAGG+TGG | - | chr1_4:39836298-39836317 | Msa0162630:three_prime_UTR | 35.0% | |
| !!! | TTTTGGTGCTTAAATGTGTG+AGG | - | chr1_4:39836341-39836360 | Msa0162630:three_prime_UTR | 35.0% |
| ATGGACCAAACTGAATCATA+TGG | - | chr1_4:39836435-39836454 | Msa0162630:three_prime_UTR | 35.0% | |
| ACATACAAAACAGATGGTTC+CGG | + | chr1_4:39836884-39836903 | None:intergenic | 35.0% | |
| !!! | CACCATCCTGTTTTAACTAT+TGG | + | chr1_4:39837127-39837146 | None:intergenic | 35.0% |
| TCCCTTTCATACAATGTTAG+TGG | - | chr1_4:39837187-39837206 | Msa0162630:intron | 35.0% | |
| ! | GGTCTGTAGTTTGCAATAAA+AGG | + | chr1_4:39837281-39837300 | None:intergenic | 35.0% |
| AAAGTAGGAATTGTAGACTG+AGG | + | chr1_4:39837982-39838001 | None:intergenic | 35.0% | |
| TGTTTACAGAAGGTTCAGAT+TGG | - | chr1_4:39838021-39838040 | Msa0162630:intron | 35.0% | |
| GTTTACAGAAGGTTCAGATT+GGG | - | chr1_4:39838022-39838041 | Msa0162630:intron | 35.0% | |
| TTTACAGAAGGTTCAGATTG+GGG | - | chr1_4:39838023-39838042 | Msa0162630:intron | 35.0% | |
| !! | AGTTACTTTCGGTGAGTTTT+AGG | - | chr1_4:39838489-39838508 | Msa0162630:intron | 35.0% |
| TTGTAGGACAATAGCGAATA+TGG | - | chr1_4:39838706-39838725 | Msa0162630:intron | 35.0% | |
| AGCGAATATGGATATAAAGG+TGG | - | chr1_4:39838718-39838737 | Msa0162630:intron | 35.0% | |
| TTTATTTCAAGGCAGCTCAT+TGG | - | chr1_4:39838767-39838786 | Msa0162630:intron | 35.0% | |
| TGGTTTCAGACTTTATCAGA+AGG | - | chr1_4:39838793-39838812 | Msa0162630:intron | 35.0% | |
| TAATTAAAGAATCCTTGGGG+AGG | + | chr1_4:39838971-39838990 | None:intergenic | 35.0% | |
| GAGAGACCAAAGAAAACAAT+AGG | + | chr1_4:39839214-39839233 | None:intergenic | 35.0% | |
| !! | TGTTTTAGATGGTTTAGGCA+TGG | + | chr1_4:39839317-39839336 | None:intergenic | 35.0% |
| AGAATGATACGACAGATGAA+TGG | + | chr1_4:39839387-39839406 | None:intergenic | 35.0% | |
| TCAGACTTAACTTAACCTTC+AGG | + | chr1_4:39839539-39839558 | None:intergenic | 35.0% | |
| GAATGTCAAATTTCAACCAC+AGG | - | chr1_4:39839718-39839737 | Msa0162630:CDS | 35.0% | |
| ATGAAATGGACAAATGCTTC+TGG | + | chr1_4:39839749-39839768 | None:intergenic | 35.0% | |
| TTCAGATAGAGTGGATGAAA+TGG | + | chr1_4:39839763-39839782 | None:intergenic | 35.0% | |
| ATCACAAGATTCAGATAGAG+TGG | + | chr1_4:39839772-39839791 | None:intergenic | 35.0% | |
| GAAAATGACATGAAGGTAGA+GGG | + | chr1_4:39839803-39839822 | None:intergenic | 35.0% | |
| AGAAAATGACATGAAGGTAG+AGG | + | chr1_4:39839804-39839823 | None:intergenic | 35.0% | |
| AGAAATATAAGTTTGGCAGG+AGG | + | chr1_4:39839913-39839932 | None:intergenic | 35.0% | |
| CCAGAGTAAATACTCAAAGT+TGG | + | chr1_4:39840028-39840047 | None:intergenic | 35.0% | |
| CCAACTTTGAGTATTTACTC+TGG | - | chr1_4:39840025-39840044 | Msa0162630:intron | 35.0% | |
| TTGCGAATTCTAGCATACAA+TGG | + | chr1_4:39840221-39840240 | None:intergenic | 35.0% | |
| ! | TTTCAACAAGGTATTCAGCA+GGG | + | chr1_4:39840319-39840338 | None:intergenic | 35.0% |
| TAATGACATGTCACCAACAA+TGG | - | chr1_4:39840397-39840416 | Msa0162630:intron | 35.0% | |
| GGAAGAGATTATACAAAGTG+TGG | - | chr1_4:39840475-39840494 | Msa0162630:intron | 35.0% | |
| AGAGATTATACAAAGTGTGG+AGG | - | chr1_4:39840478-39840497 | Msa0162630:intron | 35.0% | |
| CAATTGCACAAAAAGGAAAG+AGG | - | chr1_4:39840543-39840562 | Msa0162630:intron | 35.0% | |
| GGCTATAGAAACATTAGACA+AGG | - | chr1_4:39840595-39840614 | Msa0162630:intron | 35.0% | |
| ACAAGGCCATTTCAATGATT+AGG | - | chr1_4:39840612-39840631 | Msa0162630:intron | 35.0% | |
| CAAGGCCATTTCAATGATTA+GGG | - | chr1_4:39840613-39840632 | Msa0162630:intron | 35.0% | |
| ! | ATATCGATTACATTCCGAGA+TGG | - | chr1_4:39840637-39840656 | Msa0162630:intron | 35.0% |
| ATCAATTTCTTCCATGCAAG+GGG | + | chr1_4:39840690-39840709 | None:intergenic | 35.0% | |
| CTATCAATTTCTTCCATGCA+AGG | + | chr1_4:39840692-39840711 | None:intergenic | 35.0% | |
| ! | AGCACAATCACCTTAAGTTT+TGG | + | chr1_4:39840838-39840857 | None:intergenic | 35.0% |
| ATCTATTCCAGAATACCTGA+AGG | + | chr1_4:39841059-39841078 | None:intergenic | 35.0% | |
| !!! | GCTTGTTTTGGTATGTTGTT+TGG | + | chr1_4:39841204-39841223 | None:intergenic | 35.0% |
| AATGTACCAAAGAAGTTGAG+CGG | - | chr1_4:39841325-39841344 | Msa0162630:CDS | 35.0% | |
| TTATATCCGCTCAACTTCTT+TGG | + | chr1_4:39841334-39841353 | None:intergenic | 35.0% | |
| ! | GGTTTTCTGCATTAACCAAA+TGG | - | chr1_4:39841370-39841389 | Msa0162630:CDS | 35.0% |
| ACCAAATGGATAGACGTTAA+TGG | - | chr1_4:39841384-39841403 | Msa0162630:CDS | 35.0% | |
| ACCATTAACGTCTATCCATT+TGG | + | chr1_4:39841388-39841407 | None:intergenic | 35.0% | |
| AGCAGAGAGTAAAGAAGATA+TGG | - | chr1_4:39841410-39841429 | Msa0162630:CDS | 35.0% | |
| TACTAAGCTACAGAGATTTG+TGG | + | chr1_4:39841464-39841483 | None:intergenic | 35.0% | |
| ! | GTACACGTTTTGTATACCAT+AGG | - | chr1_4:39841481-39841500 | Msa0162630:intron | 35.0% |
| ATTCAAGAAATCCTCACCTA+TGG | + | chr1_4:39841500-39841519 | None:intergenic | 35.0% | |
| GGTGAGGATTTCTTGAATAA+TGG | - | chr1_4:39841502-39841521 | Msa0162630:intron | 35.0% | |
| ! | TAAGGTATCCTTGTGCAAAA+GGG | + | chr1_4:39841715-39841734 | None:intergenic | 35.0% |
| GAATTAGAAGATGAAGGTGG+TGG | - | chr1_4:39836301-39836320 | Msa0162630:three_prime_UTR | 40.0% | |
| ATGGTTAGAAGACACGTTTG+AGG | - | chr1_4:39836454-39836473 | Msa0162630:three_prime_UTR | 40.0% | |
| !! | AGGAGTACTTCAGATGATCA+TGG | - | chr1_4:39836728-39836747 | Msa0162630:CDS | 40.0% |
| GTACTTCAGATGATCATGGA+AGG | - | chr1_4:39836732-39836751 | Msa0162630:CDS | 40.0% | |
| TGGTTCCGGATCTAAACTTA+TGG | + | chr1_4:39836870-39836889 | None:intergenic | 40.0% | |
| TTCCGTGTTATGTATCGTGA+AGG | - | chr1_4:39837152-39837171 | Msa0162630:intron | 40.0% | |
| GTCCTTCACGATACATAACA+CGG | + | chr1_4:39837157-39837176 | None:intergenic | 40.0% | |
| TGTTATGTATCGTGAAGGAC+CGG | - | chr1_4:39837157-39837176 | Msa0162630:intron | 40.0% | |
| AATGTTAGTGGAAGGCTTTG+TGG | - | chr1_4:39837199-39837218 | Msa0162630:intron | 40.0% | |
| TATCGCTATAAGGTCCTCTT+CGG | - | chr1_4:39837633-39837652 | Msa0162630:CDS | 40.0% | |
| !! | CTTATTTTCGCAAGCTCTCA+AGG | + | chr1_4:39837791-39837810 | None:intergenic | 40.0% |
| !!! | TTACACTTTTAGGGCCTACT+TGG | + | chr1_4:39837913-39837932 | None:intergenic | 40.0% |
| GGGAACAAATATCACTAGTG+AGG | - | chr1_4:39838043-39838062 | Msa0162630:intron | 40.0% | |
| ! | ACTTTTCAATCCCGCTTTGA+AGG | - | chr1_4:39838096-39838115 | Msa0162630:intron | 40.0% |
| AAGAAAGGATGAAGGTTTCG+TGG | - | chr1_4:39838157-39838176 | Msa0162630:intron | 40.0% | |
| TCTGTGCTTGATTTACTCTC+AGG | - | chr1_4:39838338-39838357 | Msa0162630:intron | 40.0% | |
| TTAGATGGTTTAGGCATGGA+TGG | + | chr1_4:39839313-39839332 | None:intergenic | 40.0% | |
| TTAACCTTCAGGATGAACTC+CGG | + | chr1_4:39839528-39839547 | None:intergenic | 40.0% | |
| TTCCAGCCAAGATTCCAAAT+CGG | - | chr1_4:39839569-39839588 | Msa0162630:intron | 40.0% | |
| !! | AATGCTTCTGGAATAACCTG+TGG | + | chr1_4:39839737-39839756 | None:intergenic | 40.0% |
| ! | CTTTCAACAAGGTATTCAGC+AGG | + | chr1_4:39840320-39840339 | None:intergenic | 40.0% |
| TACCTTGTTGAAAGTAAGCC+AGG | - | chr1_4:39840326-39840345 | Msa0162630:intron | 40.0% | |
| AGAAAAAGATGCGTCTGAAG+AGG | - | chr1_4:39840352-39840371 | Msa0162630:intron | 40.0% | |
| AGTACTGTTGCATCCATTGT+TGG | + | chr1_4:39840413-39840432 | None:intergenic | 40.0% | |
| ! | AGTAAGTGTCATTCCAAACG+AGG | - | chr1_4:39840511-39840530 | Msa0162630:intron | 40.0% |
| ACTCTGGCATCCAAAACTTA+AGG | - | chr1_4:39840825-39840844 | Msa0162630:intron | 40.0% | |
| !! | ATTTTGAACTCTGCCACTTG+AGG | - | chr1_4:39840892-39840911 | Msa0162630:CDS | 40.0% |
| !! | TTTACTTTTATGGCGCCTTC+AGG | - | chr1_4:39841041-39841060 | Msa0162630:intron | 40.0% |
| ! | CAGTGTTTGGTTGCTTGTTT+TGG | + | chr1_4:39841216-39841235 | None:intergenic | 40.0% |
| ! | CAAGCAACCAAACACTGATT+TGG | - | chr1_4:39841219-39841238 | Msa0162630:intron | 40.0% |
| TCTTGGACCAAATCAGTGTT+TGG | + | chr1_4:39841229-39841248 | None:intergenic | 40.0% | |
| TGTCATCTGAAGACATGTCT+TGG | + | chr1_4:39841246-39841265 | None:intergenic | 40.0% | |
| ATGACAAAGTCAAGTCGAGA+AGG | - | chr1_4:39841260-39841279 | Msa0162630:intron | 40.0% | |
| ! | CGTTTTGTATACCATAGGTG+AGG | - | chr1_4:39841486-39841505 | Msa0162630:intron | 40.0% |
| GAGTTCTTTGACCATTTAGC+CGG | - | chr1_4:39841598-39841617 | Msa0162630:intron | 40.0% | |
| AGTTCTTTGACCATTTAGCC+GGG | - | chr1_4:39841599-39841618 | Msa0162630:intron | 40.0% | |
| ! | GTAAGGTATCCTTGTGCAAA+AGG | + | chr1_4:39841716-39841735 | None:intergenic | 40.0% |
| AGATTGTGCAGTATAGGGAG+AGG | - | chr1_4:39836194-39836213 | Msa0162630:three_prime_UTR | 45.0% | |
| TGTAAGATCAGGTGAGGCAA+GGG | + | chr1_4:39836230-39836249 | None:intergenic | 45.0% | |
| TTGTAAGATCAGGTGAGGCA+AGG | + | chr1_4:39836231-39836250 | None:intergenic | 45.0% | |
| ! | TTAGTGGAAGGCTTTGTGGA+CGG | - | chr1_4:39837203-39837222 | Msa0162630:intron | 45.0% |
| GAGAGCTTGCGAAAATAAGC+TGG | - | chr1_4:39837792-39837811 | Msa0162630:CDS | 45.0% | |
| GTCGTCGTTGAAACCAGAAA+GGG | + | chr1_4:39838391-39838410 | None:intergenic | 45.0% | |
| ! | GGATGTCGTGAGAGTTGATT+TGG | - | chr1_4:39838428-39838447 | Msa0162630:intron | 45.0% |
| !! | GTCGTGAGAGTTGATTTGGT+TGG | - | chr1_4:39838432-39838451 | Msa0162630:intron | 45.0% |
| !! | GTGAGAGTTGATTTGGTTGG+AGG | - | chr1_4:39838435-39838454 | Msa0162630:intron | 45.0% |
| TCAAATCATCTACCTCCCCA+AGG | - | chr1_4:39838956-39838975 | Msa0162630:intron | 45.0% | |
| ATCTTAACCCTCCAGTTCCT+AGG | - | chr1_4:39839482-39839501 | Msa0162630:intron | 45.0% | |
| TCTTAACCCTCCAGTTCCTA+GGG | - | chr1_4:39839483-39839502 | Msa0162630:intron | 45.0% | |
| TAATCCGGAGTTCATCCTGA+AGG | - | chr1_4:39839521-39839540 | Msa0162630:intron | 45.0% | |
| ATCTTGGCTGGAACAATGCT+TGG | + | chr1_4:39839562-39839581 | None:intergenic | 45.0% | |
| !! | ATCCGATTTGGAATCTTGGC+TGG | + | chr1_4:39839574-39839593 | None:intergenic | 45.0% |
| !! | CAGCATCCGATTTGGAATCT+TGG | + | chr1_4:39839578-39839597 | None:intergenic | 45.0% |
| TCAAGTAGTCAGGCTCATGT+GGG | + | chr1_4:39839631-39839650 | None:intergenic | 45.0% | |
| ATCAAGTAGTCAGGCTCATG+TGG | + | chr1_4:39839632-39839651 | None:intergenic | 45.0% | |
| AGAAGAATTCAGCAAGGCCT+TGG | - | chr1_4:39840190-39840209 | Msa0162630:intron | 45.0% | |
| GAAGAATTCAGCAAGGCCTT+GGG | - | chr1_4:39840191-39840210 | Msa0162630:intron | 45.0% | |
| AAGAATTCAGCAAGGCCTTG+GGG | - | chr1_4:39840192-39840211 | Msa0162630:intron | 45.0% | |
| CACCTGGCTTACTTTCAACA+AGG | + | chr1_4:39840331-39840350 | None:intergenic | 45.0% | |
| CTTGTTGAAAGTAAGCCAGG+TGG | - | chr1_4:39840329-39840348 | Msa0162630:intron | 45.0% | |
| GTCATTCCAAACGAGGAAGT+AGG | - | chr1_4:39840518-39840537 | Msa0162630:intron | 45.0% | |
| GTAGGCGCAATTGCACAAAA+AGG | - | chr1_4:39840536-39840555 | Msa0162630:intron | 45.0% | |
| GAGGGAAATAGTTATCCGCT+CGG | - | chr1_4:39840562-39840581 | Msa0162630:intron | 45.0% | |
| TTCATTGGCAAAGCTAGTCG+AGG | + | chr1_4:39840663-39840682 | None:intergenic | 45.0% | |
| AGGTGTAGTTACACCTCAAG+TGG | + | chr1_4:39840908-39840927 | None:intergenic | 45.0% | |
| AGACTCTGCTCTGATAGAGT+TGG | + | chr1_4:39841118-39841137 | None:intergenic | 45.0% | |
| CTATCAGAGCAGAGTCTTTC+AGG | - | chr1_4:39841121-39841140 | Msa0162630:intron | 45.0% | |
| ACTAACACCATTGTGACTCG+AGG | - | chr1_4:39841292-39841311 | Msa0162630:intron | 45.0% | |
| AGACATACCTCGAGTCACAA+TGG | + | chr1_4:39841302-39841321 | None:intergenic | 45.0% | |
| !! | CCGGTTTTGACACACTATGT+CGG | + | chr1_4:39841569-39841588 | None:intergenic | 45.0% |
| CCGACATAGTGTGTCAAAAC+CGG | - | chr1_4:39841566-39841585 | Msa0162630:intron | 45.0% | |
| TGCACAAGGATACCTTACTC+AGG | - | chr1_4:39841718-39841737 | Msa0162630:intron | 45.0% | |
| CAAAAAGGAGAGCCTGAGTA+AGG | + | chr1_4:39841733-39841752 | None:intergenic | 45.0% | |
| !!! | ATTTTTTATTTATAAATTTC+TGG | - | chr1_4:39838855-39838874 | Msa0162630:intron | 5.0% |
| !! | TTCATTAAAATAAATTAAAA+CGG | + | chr1_4:39839942-39839961 | None:intergenic | 5.0% |
| TATGTATCGTGAAGGACCGG+AGG | - | chr1_4:39837160-39837179 | Msa0162630:intron | 50.0% | |
| ATGTATCGTGAAGGACCGGA+GGG | - | chr1_4:39837161-39837180 | Msa0162630:intron | 50.0% | |
| GTATGAAAGGGAGTTCCCTC+CGG | + | chr1_4:39837179-39837198 | None:intergenic | 50.0% | |
| CCATGATGCTCTTCGACTCA+GGG | + | chr1_4:39838365-39838384 | None:intergenic | 50.0% | |
| !! | CCTGAGTCGAAGAGCATCAT+GGG | - | chr1_4:39838363-39838382 | Msa0162630:intron | 50.0% |
| AGCATCATGGGAACCCTTTC+TGG | - | chr1_4:39838375-39838394 | Msa0162630:intron | 50.0% | |
| CGTCGTCGTTGAAACCAGAA+AGG | + | chr1_4:39838392-39838411 | None:intergenic | 50.0% | |
| CGACGCAATTCCTGAAGTGA+AGG | - | chr1_4:39838407-39838426 | Msa0162630:intron | 50.0% | |
| CTCACGACATCCTTCACTTC+AGG | + | chr1_4:39838420-39838439 | None:intergenic | 50.0% | |
| TGGAGGCTTTGCTTTGCAGA+AGG | - | chr1_4:39838452-39838471 | Msa0162630:intron | 50.0% | |
| TCAAGGCAGCTCATTGGCAA+TGG | - | chr1_4:39838773-39838792 | Msa0162630:intron | 50.0% | |
| CTTAACCCTCCAGTTCCTAG+GGG | - | chr1_4:39839484-39839503 | Msa0162630:intron | 50.0% | |
| ! | CTTTTCCCCTAGGAACTGGA+GGG | + | chr1_4:39839492-39839511 | None:intergenic | 50.0% |
| CTCCAGTTCCTAGGGGAAAA+GGG | - | chr1_4:39839491-39839510 | Msa0162630:intron | 50.0% | |
| GATGAACTCCGGATTACCTG+GGG | + | chr1_4:39839517-39839536 | None:intergenic | 50.0% | |
| GGATGAACTCCGGATTACCT+GGG | + | chr1_4:39839518-39839537 | None:intergenic | 50.0% | |
| AGGATGAACTCCGGATTACC+TGG | + | chr1_4:39839519-39839538 | None:intergenic | 50.0% | |
| CAGATCGACAGCATCCGATT+TGG | + | chr1_4:39839586-39839605 | None:intergenic | 50.0% | |
| AGAATTCAGCAAGGCCTTGG+GGG | - | chr1_4:39840193-39840212 | Msa0162630:intron | 50.0% | |
| AGCATACAATGGATCCCCCA+AGG | + | chr1_4:39840210-39840229 | None:intergenic | 50.0% | |
| CACGACTACTAGTGCATCAG+AGG | - | chr1_4:39840253-39840272 | Msa0162630:intron | 50.0% | |
| GCATCAGAGGTTGCAAACAG+TGG | - | chr1_4:39840266-39840285 | Msa0162630:intron | 50.0% | |
| ! | GACGCATCTTTTTCTCCACC+TGG | + | chr1_4:39840347-39840366 | None:intergenic | 50.0% |
| ATTGCGCCTACTTCCTCGTT+TGG | + | chr1_4:39840527-39840546 | None:intergenic | 50.0% | |
| TATCCGCTCGGATGTCAAAC+AGG | - | chr1_4:39840574-39840593 | Msa0162630:intron | 50.0% | |
| TAGCCTGTTTGACATCCGAG+CGG | + | chr1_4:39840580-39840599 | None:intergenic | 50.0% | |
| AAAGCTAGTCGAGGCCATCT+CGG | + | chr1_4:39840654-39840673 | None:intergenic | 50.0% | |
| CATGCAAGGGGACTCTTCAT+TGG | + | chr1_4:39840678-39840697 | None:intergenic | 50.0% | |
| CAATGAAGAGTCCCCTTGCA+TGG | - | chr1_4:39840676-39840695 | Msa0162630:intron | 50.0% | |
| ! | GAAGCACCTTCGACTAACTC+TGG | - | chr1_4:39840809-39840828 | Msa0162630:intron | 50.0% |
| TGGATGCCAGAGTTAGTCGA+AGG | + | chr1_4:39840818-39840837 | None:intergenic | 50.0% | |
| TATGGCGCCTTCAGGTATTC+TGG | - | chr1_4:39841049-39841068 | Msa0162630:intron | 50.0% | |
| GAGTCTTTCAGGACCTACTG+AGG | - | chr1_4:39841132-39841151 | Msa0162630:intron | 50.0% | |
| TGATCAGACTCCCGGCTAAA+TGG | + | chr1_4:39841612-39841631 | None:intergenic | 50.0% | |
| ACACCAAGTGATCAGACTCC+CGG | + | chr1_4:39841620-39841639 | None:intergenic | 50.0% | |
| AAGGGCGGAGACTTAATCTC+TGG | + | chr1_4:39841697-39841716 | None:intergenic | 50.0% | |
| GGTATCCTTGTGCAAAAGGG+CGG | + | chr1_4:39841712-39841731 | None:intergenic | 50.0% | |
| TTTCGTGGCCTCTGTCTTCG+AGG | - | chr1_4:39838172-39838191 | Msa0162630:intron | 55.0% | |
| TTCGTGGCCTCTGTCTTCGA+GGG | - | chr1_4:39838173-39838192 | Msa0162630:intron | 55.0% | |
| ACAGCTTCCCTCGAAGACAG+AGG | + | chr1_4:39838183-39838202 | None:intergenic | 55.0% | |
| !! | CCCTGAGTCGAAGAGCATCA+TGG | - | chr1_4:39838362-39838381 | Msa0162630:intron | 55.0% |
| CCCATGATGCTCTTCGACTC+AGG | + | chr1_4:39838366-39838385 | None:intergenic | 55.0% | |
| ! | CCTTTTCCCCTAGGAACTGG+AGG | + | chr1_4:39839493-39839512 | None:intergenic | 55.0% |
| CCTCCAGTTCCTAGGGGAAA+AGG | - | chr1_4:39839490-39839509 | Msa0162630:intron | 55.0% | |
| GAAAAGGGCCCCAGGTAATC+CGG | - | chr1_4:39839506-39839525 | Msa0162630:intron | 55.0% | |
| TAGCCGGGAGTCTGATCACT+TGG | - | chr1_4:39841614-39841633 | Msa0162630:intron | 55.0% | |
| GGCGGAGACTTAATCTCTGG+AGG | + | chr1_4:39841694-39841713 | None:intergenic | 55.0% | |
| ! | AGTCTCCGCCCTTTTGCACA+AGG | - | chr1_4:39841704-39841723 | Msa0162630:intron | 55.0% |
| ! | GGCCCTTTTCCCCTAGGAAC+TGG | + | chr1_4:39839496-39839515 | None:intergenic | 60.0% |
| AGGACCTACTGAGGCAAGCC+AGG | - | chr1_4:39841141-39841160 | Msa0162630:intron | 60.0% | |
| ! | CCAACCTGGCTTGCCTCAGT+AGG | + | chr1_4:39841148-39841167 | None:intergenic | 60.0% |
| CCTACTGAGGCAAGCCAGGT+TGG | - | chr1_4:39841145-39841164 | Msa0162630:intron | 60.0% | |
| TCCTAGGGGAAAAGGGCCCC+AGG | - | chr1_4:39839498-39839517 | Msa0162630:intron | 65.0% | |
| ! | ACCTGGGGCCCTTTTCCCCT+AGG | + | chr1_4:39839502-39839521 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39836178 | 39841920 | 39836178 | ID=Msa0162630;Name=Msa0162630 |
| chr1_4 | mRNA | 39836178 | 39841920 | 39836178 | ID=Msa0162630-mRNA-1;Parent=Msa0162630;Name=Msa0162630-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.88|1|0.62|0.88|9|536|572 |
| chr1_4 | exon | 39836178 | 39837035 | 39836178 | ID=Msa0162630-mRNA-1:exon:11524;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39837252 | 39837937 | 39837252 | ID=Msa0162630-mRNA-1:exon:11523;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39839284 | 39839386 | 39839284 | ID=Msa0162630-mRNA-1:exon:11522;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39839599 | 39839738 | 39839599 | ID=Msa0162630-mRNA-1:exon:11521;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39839835 | 39839934 | 39839835 | ID=Msa0162630-mRNA-1:exon:11520;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39840705 | 39840744 | 39840705 | ID=Msa0162630-mRNA-1:exon:11519;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39840859 | 39840967 | 39840859 | ID=Msa0162630-mRNA-1:exon:11518;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39841317 | 39841432 | 39841317 | ID=Msa0162630-mRNA-1:exon:11517;Parent=Msa0162630-mRNA-1 |
| chr1_4 | exon | 39841818 | 39841920 | 39841818 | ID=Msa0162630-mRNA-1:exon:11516;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39841818 | 39841920 | 39841818 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39841317 | 39841432 | 39841317 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39840859 | 39840967 | 39840859 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39840705 | 39840744 | 39840705 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39839835 | 39839934 | 39839835 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39839599 | 39839738 | 39839599 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39839284 | 39839386 | 39839284 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39837252 | 39837937 | 39837252 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | CDS | 39836714 | 39837035 | 39836714 | ID=Msa0162630-mRNA-1:cds;Parent=Msa0162630-mRNA-1 |
| chr1_4 | three_prime_UTR | 39836178 | 39836713 | 39836178 | ID=Msa0162630-mRNA-1:three_prime_utr;Parent=Msa0162630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
